ID ALBA_NITMS Reviewed; 95 AA. AC A9A323; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE RecName: Full=DNA/RNA-binding protein Alba {ECO:0000255|HAMAP-Rule:MF_01122}; GN Name=albA {ECO:0000255|HAMAP-Rule:MF_01122}; GN OrderedLocusNames=Nmar_0255; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds double-stranded DNA tightly but without sequence CC specificity. It is distributed uniformly and abundantly on the CC chromosome, suggesting a role in chromatin architecture. However, CC it does not significantly compact DNA. Binds rRNA and mRNA in CC vivo. May play a role in maintaining the structural and functional CC stability of RNA, and, perhaps, ribosomes. {ECO:0000255|HAMAP- CC Rule:MF_01122}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_01122}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01122}. CC Chromosome {ECO:0000255|HAMAP-Rule:MF_01122}. CC -!- PTM: Acetylated. Deacetylation by the SIR2-homolog deacetylase may CC regulate its activity. {ECO:0000255|HAMAP-Rule:MF_01122}. CC -!- SIMILARITY: Belongs to the histone-like Alba family. CC {ECO:0000255|HAMAP-Rule:MF_01122}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12151.1; -; Genomic_DNA. DR ProteinModelPortal; A9A323; -. DR STRING; 436308.Nmar_0255; -. DR EnsemblBacteria; ABX12151; ABX12151; Nmar_0255. DR KEGG; nmr:Nmar_0255; -. DR eggNOG; arCOG01753; Archaea. DR eggNOG; COG1581; LUCA. DR HOGENOM; HOG000105803; -. DR KO; K03622; -. DR OMA; EARDTIF; -. DR BioCyc; NMAR436308:GI3J-263-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:UniProtKB-SubCell. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003690; F:double-stranded DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.110.20; -; 1. DR HAMAP; MF_01122; AlbA; 1. DR InterPro; IPR013795; DNA/RNA-bd_Alba. DR InterPro; IPR002775; DNA/RNA-bd_Alba-like. DR Pfam; PF01918; Alba; 1. DR PIRSF; PIRSF028732; Alba; 1. DR SUPFAM; SSF82704; SSF82704; 1. PE 3: Inferred from homology; KW Acetylation; Chromosome; Complete proteome; Cytoplasm; DNA-binding; KW Reference proteome; RNA-binding. FT CHAIN 1 95 DNA/RNA-binding protein Alba. FT /FTId=PRO_1000137256. FT MOD_RES 14 14 N6-acetyllysine. {ECO:0000255|HAMAP- FT Rule:MF_01122}. SQ SEQUENCE 95 AA; 10305 MW; 65C761B8DF9E6C19 CRC64; MSTEARDTIF IGKKPLMAYV TSTLIQLANI PSVNIKARGL SIGRAVDVAQ IIARKTENAG YSIGEIKIGS ESLESQDGRT RNVSTIEIEV KRNQA // ID ARGB_NITMS Reviewed; 267 AA. AC A9A1K7; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 59. DE RecName: Full=Acetylglutamate/acetylaminoadipate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; DE EC=2.7.2.- {ECO:0000255|HAMAP-Rule:MF_00082}; DE EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082}; DE AltName: Full=N-acetyl-L-glutamate/N-acetyl-L-aminoadipate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; DE AltName: Full=NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; DE Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082}; GN Name=argB {ECO:0000255|HAMAP-Rule:MF_00082}; GN Synonyms=lysZ {ECO:0000255|HAMAP-Rule:MF_00082}; GN OrderedLocusNames=Nmar_1290; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in both the arginine and lysine biosynthetic CC pathways. {ECO:0000255|HAMAP-Rule:MF_00082}. CC -!- CATALYTIC ACTIVITY: ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L- CC glutamate 5-phosphate. {ECO:0000255|HAMAP-Rule:MF_00082}. CC -!- CATALYTIC ACTIVITY: ATP + N-acetyl-L-aminoadipate = ADP + N- CC acetyl-L-aminoadipate 5-phosphate. {ECO:0000255|HAMAP- CC Rule:MF_00082}. CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)- CC acetyl-L-ornithine from L-glutamate: step 2/4. {ECO:0000255|HAMAP- CC Rule:MF_00082}. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via AAA CC pathway; L-lysine from L-alpha-aminoadipate (Thermus route): step CC 2/5. {ECO:0000255|HAMAP-Rule:MF_00082}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00082}. CC -!- SIMILARITY: Belongs to the acetylglutamate kinase family. CC {ECO:0000255|HAMAP-Rule:MF_00082}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13186.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K7; -. DR STRING; 436308.Nmar_1290; -. DR EnsemblBacteria; ABX13186; ABX13186; Nmar_1290. DR KEGG; nmr:Nmar_1290; -. DR eggNOG; arCOG00862; Archaea. DR eggNOG; COG0548; LUCA. DR HOGENOM; HOG000233259; -. DR KO; K05828; -. DR OMA; AEGFMTK; -. DR BioCyc; NMAR436308:GI3J-1323-MONOMER; -. DR UniPathway; UPA00033; UER00036. DR UniPathway; UPA00068; UER00107. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003991; F:acetylglutamate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0019878; P:lysine biosynthetic process via aminoadipic acid; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.1160.10; -; 1. DR HAMAP; MF_00082_A; ArgB_A; 1. DR InterPro; IPR004662; AcgluKinase. DR InterPro; IPR001048; Asp/Glu/Uridylate_kinase. DR Pfam; PF00696; AA_kinase; 1. DR PIRSF; PIRSF000728; NAGK; 1. DR SUPFAM; SSF53633; SSF53633; 1. DR TIGRFAMs; TIGR00761; argB; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Arginine biosynthesis; ATP-binding; KW Complete proteome; Cytoplasm; Kinase; Lysine biosynthesis; KW Nucleotide-binding; Reference proteome; Transferase. FT CHAIN 1 267 Acetylglutamate/acetylaminoadipate FT kinase. FT /FTId=PRO_1000092867. FT REGION 37 38 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00082}. FT BINDING 64 64 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00082}. FT BINDING 169 169 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00082}. FT SITE 5 5 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_00082}. FT SITE 226 226 Transition state stabilizer. FT {ECO:0000255|HAMAP-Rule:MF_00082}. SQ SEQUENCE 267 AA; 28551 MW; F9906DC32EB91ECC CRC64; MITIKIGGSV VDDLHPSTIA DIKKIAESEG VILVHGGGKE VTKVCEQLGK EPKFVTSPSG IKSRYTDKET AEIFTMVMSG RINKTIVQML QKNGINAIGL SGVDAKVIEA DRKKKLLIVN EKGRKQAIDG GYTGKIREVN ASFIKSLLDQ GLTPVISPIA ISEESEFLNV DGDRAAAYVA GKVGSDKVLF ITNVDGLLMD DKVVPKLTLA EAKEIRPKIG PGMEKKILAS TEALDMGVTT ALIANGQKEN PISSAISHDN CTVIEHE // ID AROA_NITMS Reviewed; 422 AA. AC A9A231; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 57. DE RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; DE EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210}; DE AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; DE Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210}; DE Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210}; GN Name=aroA {ECO:0000255|HAMAP-Rule:MF_00210}; GN OrderedLocusNames=Nmar_0548; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the transfer of the enolpyruvyl moiety of CC phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- CC phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and CC inorganic phosphate. {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- CATALYTIC ACTIVITY: Phosphoenolpyruvate + 3-phosphoshikimate = CC phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. CC {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis. {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00210}. CC -!- SIMILARITY: Belongs to the EPSP synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00210}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12444.1; -; Genomic_DNA. DR ProteinModelPortal; A9A231; -. DR STRING; 436308.Nmar_0548; -. DR EnsemblBacteria; ABX12444; ABX12444; Nmar_0548. DR KEGG; nmr:Nmar_0548; -. DR eggNOG; arCOG04134; Archaea. DR eggNOG; COG0128; LUCA. DR HOGENOM; HOG000247372; -. DR KO; K00800; -. DR OMA; CPDLAQT; -. DR BioCyc; NMAR436308:GI3J-570-MONOMER; -. DR UniPathway; UPA00053; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003866; F:3-phosphoshikimate 1-carboxyvinyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.65.10.10; -; 2. DR HAMAP; MF_00210; EPSP_synth; 1. DR InterPro; IPR001986; Enolpyruvate_Tfrase_dom. DR InterPro; IPR006264; EPSP_synthase. DR InterPro; IPR013792; RNA3'P_cycl/enolpyr_Trfase_a/b. DR Pfam; PF00275; EPSP_synthase; 1. DR PIRSF; PIRSF000505; EPSPS; 1. DR SUPFAM; SSF55205; SSF55205; 1. DR TIGRFAMs; TIGR01356; aroA; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Cytoplasm; Reference proteome; Transferase. FT CHAIN 1 422 3-phosphoshikimate 1- FT carboxyvinyltransferase. FT /FTId=PRO_1000099733. FT REGION 20 21 Shikimate-3-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT REGION 88 91 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT REGION 161 163 Shikimate-3-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT ACT_SITE 305 305 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT ACT_SITE 333 333 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT BINDING 25 25 Shikimate-3-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT BINDING 118 118 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT BINDING 189 189 Shikimate-3-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT BINDING 332 332 Shikimate-3-phosphate. FT {ECO:0000255|HAMAP-Rule:MF_00210}. FT BINDING 336 336 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. FT BINDING 378 378 Phosphoenolpyruvate. {ECO:0000255|HAMAP- FT Rule:MF_00210}. SQ SEQUENCE 422 AA; 45612 MW; 210BA605070D7586 CRC64; MKCKVEKSKI SGQIVCPSNK SYTHRAIFLA SLAGNGSKVE NVLLSADTMA TVEACKKFGA SIEIENSSII VKNPIKFDKI VPEINTENSG TTIRIASGIA SLFSEEITLT GDESLQKRPM QPLLDALSSI GAQCQSTDGK PPIKITGKIS GGDVTIPGNF SSQFISALLI SAPLTEKGIN LSIKDNLVSK PYLDATIATM RKFGVSVQTL IPYKRYNISP QVYNAATFTV PIDFSSLALL LSAAVLNGDE TVIKGNIGNL PQGDEVFIDI LEQLGVTVNI GEDEIKIKSP EKLKGGRFDL SNSPDLLPPL TILALNSENP IEIVNVKHAR LKETDRIAIT SRELVKLGIK VQENEDGLIL ESTENLTGAE LNSENDHRLF MAFCIAGMYV GNCVVTDPES VQVSYPDFVE EMNRIGARIQ PE // ID ARLY_NITMS Reviewed; 485 AA. AC A9A331; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 50. DE RecName: Full=Argininosuccinate lyase {ECO:0000255|HAMAP-Rule:MF_00006}; DE Short=ASAL {ECO:0000255|HAMAP-Rule:MF_00006}; DE EC=4.3.2.1 {ECO:0000255|HAMAP-Rule:MF_00006}; DE AltName: Full=Arginosuccinase {ECO:0000255|HAMAP-Rule:MF_00006}; GN Name=argH {ECO:0000255|HAMAP-Rule:MF_00006}; GN OrderedLocusNames=Nmar_0263; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: 2-(N(omega)-L-arginino)succinate = fumarate + CC L-arginine. {ECO:0000255|HAMAP-Rule:MF_00006}. CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; L- CC arginine from L-ornithine and carbamoyl phosphate: step 3/3. CC {ECO:0000255|HAMAP-Rule:MF_00006}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00006}. CC -!- SIMILARITY: Belongs to the lyase 1 family. Argininosuccinate lyase CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00006}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12159.1; -; Genomic_DNA. DR ProteinModelPortal; A9A331; -. DR STRING; 436308.Nmar_0263; -. DR EnsemblBacteria; ABX12159; ABX12159; Nmar_0263. DR KEGG; nmr:Nmar_0263; -. DR eggNOG; arCOG01748; Archaea. DR eggNOG; COG0165; LUCA. DR HOGENOM; HOG000242744; -. DR KO; K01755; -. DR OMA; GRGKMER; -. DR BioCyc; NMAR436308:GI3J-271-MONOMER; -. DR UniPathway; UPA00068; UER00114. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004056; F:argininosuccinate lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0042450; P:arginine biosynthetic process via ornithine; IEA:InterPro. DR Gene3D; 1.10.275.10; -; 1. DR HAMAP; MF_00006; Arg_succ_lyase; 1. DR InterPro; IPR029419; Arg_succ_lyase_C. DR InterPro; IPR009049; Argininosuccinate_lyase. DR InterPro; IPR024083; Fumarase/histidase_N. DR InterPro; IPR000362; Fumarate_lyase_fam. DR InterPro; IPR022761; Fumarate_lyase_N. DR InterPro; IPR008948; L-Aspartase-like. DR PANTHER; PTHR11444; PTHR11444; 1. DR PANTHER; PTHR11444:SF3; PTHR11444:SF3; 1. DR Pfam; PF14698; ASL_C2; 1. DR Pfam; PF00206; Lyase_1; 1. DR PRINTS; PR00149; FUMRATELYASE. DR SUPFAM; SSF48557; SSF48557; 1. DR TIGRFAMs; TIGR00838; argH; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Arginine biosynthesis; Complete proteome; KW Cytoplasm; Lyase; Reference proteome. FT CHAIN 1 485 Argininosuccinate lyase. FT /FTId=PRO_1000089098. SQ SEQUENCE 485 AA; 53923 MW; CA196362C310B921 CRC64; MYRSRLGNDL SDITLDYVSS IDDDAAITFY DIVGSQAHVL MLYQQKIITK SDAKKILSSL ESLKDETFDS SSGAEDIHEL IEALVIKRAG MSSGGKMHTA RSRNDQVVLD IRMKIRDDIN IICNCLLDTI EALVSVAKNH QKTIMPLYTH LQQAQAGLFS HYLLAHADVL SRDFQRLYGT FERINQSPLG AGPVGGTSIS IDRRSTAKML GFDDVVENSI DATSTRDFVA EYVSMVSILM TNLSKIAEDF VIWSTSEFSF IELSDEFTSP SSVMPQKKNP DILELTRGKT SEVIGNLTAI LTTVKGLASG YGRDLQQIKS SIWSTSKISI SALLIFKSML LTLKVNEKQM KKVTESSNLI ALDIAEKLVQ EGIPFRVTHK IAGSLTQLAH LSKKPISKLT PSDIKKSVAD TKVDPKLVLE IISSITVVSS LKERKSYGSS GYDEQKRMIS DRLKKINDFR TDLTHRENKI NSSLEDLKKQ IDEII // ID APT_NITMS Reviewed; 170 AA. AC A9A3N4; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 54. DE RecName: Full=Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; DE Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004}; DE EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004}; GN Name=apt {ECO:0000255|HAMAP-Rule:MF_00004}; GN OrderedLocusNames=Nmar_1400; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes a salvage reaction resulting in the formation CC of AMP, that is energically less costly than de novo synthesis. CC {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- CATALYTIC ACTIVITY: AMP + diphosphate = adenine + 5-phospho-alpha- CC D-ribose 1-diphosphate. {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- PATHWAY: Purine metabolism; AMP biosynthesis via salvage pathway; CC AMP from adenine: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00004}. CC -!- SIMILARITY: Belongs to the purine/pyrimidine CC phosphoribosyltransferase family. {ECO:0000255|HAMAP- CC Rule:MF_00004}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13296.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3N4; -. DR STRING; 436308.Nmar_1400; -. DR EnsemblBacteria; ABX13296; ABX13296; Nmar_1400. DR KEGG; nmr:Nmar_1400; -. DR eggNOG; arCOG00030; Archaea. DR eggNOG; COG0503; LUCA. DR HOGENOM; HOG000036776; -. DR KO; K00759; -. DR OMA; ATVEIHA; -. DR BioCyc; NMAR436308:GI3J-1435-MONOMER; -. DR UniPathway; UPA00588; UER00646. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003999; F:adenine phosphoribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006168; P:adenine salvage; IEA:UniProtKB-HAMAP. DR GO; GO:0044209; P:AMP salvage; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.2020; -; 1. DR HAMAP; MF_00004; Aden_phosphoribosyltr; 1. DR InterPro; IPR005764; Ade_phspho_trans. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR Pfam; PF00156; Pribosyltran; 1. DR SUPFAM; SSF53271; SSF53271; 1. DR TIGRFAMs; TIGR01090; apt; 1. DR PROSITE; PS00103; PUR_PYR_PR_TRANSFER; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Glycosyltransferase; Purine salvage; KW Reference proteome; Transferase. FT CHAIN 1 170 Adenine phosphoribosyltransferase. FT /FTId=PRO_1000088987. SQ SEQUENCE 170 AA; 18956 MW; 2292EEB62677922B CRC64; MNLRDKIAEY PNFPKKGILF RDFSPILKDP SAMESIADEF SKYFHPKNID IFAGIESRGF ILACILATRY NKGMMMIRKA GKLPGKTTKI SYTIEYGKDT IEIQKDIIEE GQRVLICDDL LATGGTAKAA AKLIEKVGGK IVGFAFIIEL TDLNGMKGIS KYDCKSLVKY // ID ARGC_NITMS Reviewed; 348 AA. AC A9A1K6; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 67. DE RecName: Full=N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl-phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00150}; DE Short=AGPR {ECO:0000255|HAMAP-Rule:MF_00150}; DE EC=1.2.1.- {ECO:0000255|HAMAP-Rule:MF_00150}; DE EC=1.2.1.38 {ECO:0000255|HAMAP-Rule:MF_00150}; DE AltName: Full=N-acetyl-glutamate semialdehyde/N-acetyl-aminoadipate semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00150}; DE Short=NAGSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00150}; GN Name=argC {ECO:0000255|HAMAP-Rule:MF_00150}; GN Synonyms=lysY {ECO:0000255|HAMAP-Rule:MF_00150}; GN OrderedLocusNames=Nmar_1289; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in both the arginine and lysine biosynthetic CC pathways. {ECO:0000255|HAMAP-Rule:MF_00150}. CC -!- CATALYTIC ACTIVITY: N-acetyl-L-glutamate 5-semialdehyde + NADP(+) CC + phosphate = N-acetyl-5-glutamyl phosphate + NADPH. CC {ECO:0000255|HAMAP-Rule:MF_00150}. CC -!- CATALYTIC ACTIVITY: N(2)-acetyl-L-aminoadipate-semialdehyde + CC NADP(+) + phosphate = N(2)-acetyl-L-gamma-aminoadipyl phosphate + CC NADPH. {ECO:0000255|HAMAP-Rule:MF_00150}. CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)- CC acetyl-L-ornithine from L-glutamate: step 3/4. {ECO:0000255|HAMAP- CC Rule:MF_00150}. CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via AAA CC pathway; L-lysine from L-alpha-aminoadipate (Thermus route): step CC 3/5. {ECO:0000255|HAMAP-Rule:MF_00150}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00150}. CC -!- SIMILARITY: Belongs to the NAGSA dehydrogenase family. Type 1 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00150}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13185.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K6; -. DR STRING; 436308.Nmar_1289; -. DR EnsemblBacteria; ABX13185; ABX13185; Nmar_1289. DR KEGG; nmr:Nmar_1289; -. DR eggNOG; arCOG00495; Archaea. DR eggNOG; COG0002; LUCA. DR HOGENOM; HOG000254904; -. DR KO; K05829; -. DR OMA; TFVPHLT; -. DR BioCyc; NMAR436308:GI3J-1322-MONOMER; -. DR UniPathway; UPA00033; UER00037. DR UniPathway; UPA00068; UER00108. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003942; F:N-acetyl-gamma-glutamyl-phosphate reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0019878; P:lysine biosynthetic process via aminoadipic acid; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00150; ArgC_type1; 1. DR InterPro; IPR000706; AGPR_type-1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000534; Semialdehyde_DH_NAD-bd. DR InterPro; IPR012280; Semialdhyde_DH_dimer_dom. DR Pfam; PF01118; Semialdhyde_dh; 1. DR Pfam; PF02774; Semialdhyde_dhC; 1. DR SMART; SM00859; Semialdhyde_dh; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01850; argC; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Arginine biosynthesis; Complete proteome; KW Cytoplasm; Lysine biosynthesis; NADP; Oxidoreductase; KW Reference proteome. FT CHAIN 1 348 N-acetyl-gamma-glutamyl-phosphate/N- FT acetyl-gamma-aminoadipyl-phosphate FT reductase. FT /FTId=PRO_1000096733. FT ACT_SITE 149 149 {ECO:0000255|HAMAP-Rule:MF_00150}. SQ SEQUENCE 348 AA; 38795 MW; FA9498B737304BB2 CRC64; MKVGVVGASG YVGGETLRLL VNHPNVEITM VTSRQHVGEY LHRVQPSLKG FTDLTFSELD YDKLTDKCDL VFTAVPHGTA TEIVKALYDR GIKIIDLSAD YRLHDQDAYD KWYGWEHPHP DYLNKSVFGV PELHREEIKK AQLVSCPGCM AVTSMLALAP LIRNNIIDTD HIVVDSKIGS SGAGSGSGTA HAMRAGVIRP YKPAKHRHTG EIEQELSEIA GKKIHVSMSP HAVDVVRGIL CTNHTFMQKD MEEKELWKLY RQTYGEEKFV RLIRDKKGLY KFPDPKFLVG SNFCDIGFDL DEDNNRLIAL SASDNLMKGA AGSAIQNMNV MCGFDEMDGL RYTPLTPV // ID AROE_NITMS Reviewed; 273 AA. AC A9A233; DT 22-SEP-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 62. DE RecName: Full=Shikimate dehydrogenase (NADP(+)) {ECO:0000255|HAMAP-Rule:MF_00222}; DE Short=SDH {ECO:0000255|HAMAP-Rule:MF_00222}; DE EC=1.1.1.25 {ECO:0000255|HAMAP-Rule:MF_00222}; GN Name=aroE {ECO:0000255|HAMAP-Rule:MF_00222}; GN OrderedLocusNames=Nmar_0550; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the biosynthesis of the chorismate, which CC leads to the biosynthesis of aromatic amino acids. Catalyzes the CC reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to CC yield shikimate (SA). {ECO:0000255|HAMAP-Rule:MF_00222}. CC -!- CATALYTIC ACTIVITY: Shikimate + NADP(+) = 3-dehydroshikimate + CC NADPH. {ECO:0000255|HAMAP-Rule:MF_00222}. CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 4/7. {ECO:0000255|HAMAP-Rule:MF_00222}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00222}. CC -!- SIMILARITY: Belongs to the shikimate dehydrogenase family. CC {ECO:0000255|HAMAP-Rule:MF_00222}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12446.1; -; Genomic_DNA. DR ProteinModelPortal; A9A233; -. DR STRING; 436308.Nmar_0550; -. DR EnsemblBacteria; ABX12446; ABX12446; Nmar_0550. DR KEGG; nmr:Nmar_0550; -. DR eggNOG; arCOG01033; Archaea. DR eggNOG; COG0169; LUCA. DR HOGENOM; HOG000237875; -. DR KO; K00014; -. DR OMA; PFIHNSA; -. DR BioCyc; NMAR436308:GI3J-572-MONOMER; -. DR UniPathway; UPA00053; UER00087. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0004764; F:shikimate 3-dehydrogenase (NADP+) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0019632; P:shikimate metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00222; Shikimate_DH_AroE; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR011342; Shikimate_DH. DR InterPro; IPR013708; Shikimate_DH-bd_N. DR InterPro; IPR022893; Shikimate_DH_fam. DR InterPro; IPR006151; Shikm_DH/Glu-tRNA_Rdtase. DR Pfam; PF01488; Shikimate_DH; 1. DR Pfam; PF08501; Shikimate_dh_N; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR00507; aroE; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; NADP; Oxidoreductase; Reference proteome. FT CHAIN 1 273 Shikimate dehydrogenase (NADP(+)). FT /FTId=PRO_1000204269. FT NP_BIND 126 130 NADP. {ECO:0000255|HAMAP-Rule:MF_00222}. FT NP_BIND 150 155 NADP. {ECO:0000255|HAMAP-Rule:MF_00222}. FT REGION 15 17 Shikimate binding. {ECO:0000255|HAMAP- FT Rule:MF_00222}. FT ACT_SITE 66 66 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00222}. FT BINDING 62 62 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222}. FT BINDING 78 78 NADP. {ECO:0000255|HAMAP-Rule:MF_00222}. FT BINDING 87 87 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222}. FT BINDING 102 102 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222}. FT BINDING 217 217 NADP; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00222}. FT BINDING 219 219 Shikimate. {ECO:0000255|HAMAP- FT Rule:MF_00222}. FT BINDING 240 240 NADP; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00222}. SQ SEQUENCE 273 AA; 29824 MW; E84ADDC8CE2D76F6 CRC64; MGKTFAVIGD PIDHSLSPNI HSAAFRELNL DCSYIAYRIP KDELGEGIEG LKKIQIAGFN VTIPHKIEMM KYLDKIDESC SLIGAVNTVV SNDGVLKGYN TDMDGFLEPL KKRNIEIENS NVLLLGAGGA ARAIVAGFAK EKAKSITIAN RTIEKANNLV EFAKKISLDA NAITIDQVGE SAKDYNIIVN ATSIGLQNES SPISFEGVNE KTVVYDIVYL PMNTDFLKKA KEKNATIIFG YEMLLGQAVR AFEIWHGMEA PYNAMKKALL GGF // ID ASPD_NITMS Reviewed; 272 AA. AC A9A1F7; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Probable L-aspartate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01265}; DE EC=1.4.1.21 {ECO:0000255|HAMAP-Rule:MF_01265}; GN Name=nadX {ECO:0000255|HAMAP-Rule:MF_01265}; GN OrderedLocusNames=Nmar_1240; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Specifically catalyzes the NAD or NADP-dependent CC dehydrogenation of L-aspartate to iminoaspartate. CC {ECO:0000255|HAMAP-Rule:MF_01265}. CC -!- CATALYTIC ACTIVITY: L-aspartate + H(2)O + NAD(P)(+) = oxaloacetate CC + NH(3) + NAD(P)H. {ECO:0000255|HAMAP-Rule:MF_01265}. CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; CC iminoaspartate from L-aspartate (dehydrogenase route): step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_01265}. CC -!- MISCELLANEOUS: The iminoaspartate product is unstable in aqueous CC solution and can decompose to oxaloacetate and ammonia. CC {ECO:0000255|HAMAP-Rule:MF_01265}. CC -!- SIMILARITY: Belongs to the L-aspartate dehydrogenase family. CC {ECO:0000255|HAMAP-Rule:MF_01265}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13136.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1F7; -. DR STRING; 436308.Nmar_1240; -. DR EnsemblBacteria; ABX13136; ABX13136; Nmar_1240. DR KEGG; nmr:Nmar_1240; -. DR eggNOG; arCOG00254; Archaea. DR eggNOG; COG1712; LUCA. DR HOGENOM; HOG000206326; -. DR KO; K06989; -. DR OMA; MIMSVGA; -. DR BioCyc; NMAR436308:GI3J-1273-MONOMER; -. DR UniPathway; UPA00253; UER00456. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033735; F:aspartate dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0051287; F:NAD binding; IEA:UniProtKB-HAMAP. DR GO; GO:0050661; F:NADP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016639; F:oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; IEA:UniProtKB-HAMAP. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006742; P:NADP catabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_01265; NadX; 1. DR InterPro; IPR005106; Asp/hSer_DH_NAD-bd. DR InterPro; IPR002811; Asp_DH. DR InterPro; IPR022487; Asp_DH_arc. DR InterPro; IPR020626; Asp_DH_prok. DR InterPro; IPR011182; L-Asp_DH. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF01958; DUF108; 1. DR Pfam; PF03447; NAD_binding_3; 1. DR PIRSF; PIRSF005227; Asp_dh_NAD_syn; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR03855; NAD_NadX; 1. PE 3: Inferred from homology; KW Complete proteome; NAD; NADP; Oxidoreductase; KW Pyridine nucleotide biosynthesis; Reference proteome. FT CHAIN 1 272 Probable L-aspartate dehydrogenase. FT /FTId=PRO_1000140088. FT ACT_SITE 222 222 {ECO:0000255|HAMAP-Rule:MF_01265}. FT BINDING 125 125 NAD; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01265}. FT BINDING 192 192 NAD. {ECO:0000255|HAMAP-Rule:MF_01265}. SQ SEQUENCE 272 AA; 29185 MW; 66E9C99CAF4E57D9 CRC64; MKRIALLGCG SMGTQIALAI DSENFPATLT HVYDESKDAS FSLTQKLKNK PEIVENSHLL SSQPIDIVVE AASQNAVKDV ALSVIQNKKD LMIMSVGALL DESIYDILSD ACNDFKKTIY LPSGAIAGLD GLKSVKDELE SISITTTKHP RSLKGAKFFE TSDINLDEIT SSTVVYKGTA KEAVTLFPAN INVAALLSLT GIGSEKTSVT IVADPNTDKN THHIEASGKF GTMTFTIENV PDSNNPKTSR LAILSAIETL KKYCSDDIQI GT // ID BIOB_NITMS Reviewed; 326 AA. AC A9A5K6; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 56. DE RecName: Full=Biotin synthase {ECO:0000255|HAMAP-Rule:MF_01694}; DE EC=2.8.1.6 {ECO:0000255|HAMAP-Rule:MF_01694}; GN Name=bioB {ECO:0000255|HAMAP-Rule:MF_01694}; GN OrderedLocusNames=Nmar_0821; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of dethiobiotin (DTB) to biotin CC by the insertion of a sulfur atom into dethiobiotin via a radical- CC based mechanism. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- CATALYTIC ACTIVITY: Dethiobiotin + sulfur-(sulfur carrier) + 2 S- CC adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + CC (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 CC oxidized [2Fe-2S] ferredoxin. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01694}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|HAMAP-Rule:MF_01694}; CC -!- COFACTOR: CC Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:49601; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01694}; CC Note=Binds 1 [2Fe-2S] cluster. The cluster is coordinated with 3 CC cysteines and 1 arginine. {ECO:0000255|HAMAP-Rule:MF_01694}; CC -!- PATHWAY: Cofactor biosynthesis; biotin biosynthesis; biotin from CC 7,8-diaminononanoate: step 2/2. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01694}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. Biotin CC synthase family. {ECO:0000255|HAMAP-Rule:MF_01694}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12717.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5K6; -. DR STRING; 436308.Nmar_0821; -. DR EnsemblBacteria; ABX12717; ABX12717; Nmar_0821. DR KEGG; nmr:Nmar_0821; -. DR eggNOG; arCOG00658; Archaea. DR eggNOG; COG0502; LUCA. DR HOGENOM; HOG000239958; -. DR KO; K01012; -. DR OMA; NCRFCAQ; -. DR BioCyc; NMAR436308:GI3J-848-MONOMER; -. DR UniPathway; UPA00078; UER00162. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0004076; F:biotin synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009102; P:biotin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01694; BioB; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR010722; BATS_dom. DR InterPro; IPR002684; Biotin_synth/BioAB. DR InterPro; IPR024177; Biotin_synthase. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR007197; rSAM. DR Pfam; PF06968; BATS; 1. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF001619; Biotin_synth; 1. DR SMART; SM00876; BATS; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR00433; bioB; 1. PE 3: Inferred from homology; KW 2Fe-2S; 4Fe-4S; Biotin biosynthesis; Complete proteome; Iron; KW Iron-sulfur; Metal-binding; Reference proteome; KW S-adenosyl-L-methionine; Transferase. FT CHAIN 1 326 Biotin synthase. FT /FTId=PRO_0000381503. FT METAL 68 68 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 72 72 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 75 75 Iron-sulfur 1 (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 112 112 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 145 145 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 204 204 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. FT METAL 274 274 Iron-sulfur 2 (2Fe-2S). FT {ECO:0000255|HAMAP-Rule:MF_01694}. SQ SEQUENCE 326 AA; 36271 MW; 81B17EEB1B67D9ED CRC64; MSTLEFIKEC QEKVFSGNHI TAEDAEKLLN IPEENLKDLA RCANEITRDF NGEKVDVEQL NNIKKNACSE DCTFCGQSAF FDTGIETYQL PSPEEVVSKA QKAKEEGAES YCLVAAWREP SRTDFEKVCK IITEINDKVG ISVECSLGFL TQEQAKKLKD LKVKRYNHNL ETAKSKFPEI CTTHTYEDRL ETLGIARDAG LELCTGGIIG LGETREQRLE LTLELARLYP EEVTINILVP VPGTPLELQT DLPNSEIVRM FSVIRFLLPE SVIKISGGRE TNLEDSGEEL LQSGANGIIT SGYLTMGGNE AQKDHAMIEK IGLKSQ // ID BIOD_NITMS Reviewed; 228 AA. AC A9A5K8; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 60. DE RecName: Full=ATP-dependent dethiobiotin synthetase BioD {ECO:0000255|HAMAP-Rule:MF_00336}; DE EC=6.3.3.3 {ECO:0000255|HAMAP-Rule:MF_00336}; DE AltName: Full=DTB synthetase {ECO:0000255|HAMAP-Rule:MF_00336}; DE Short=DTBS {ECO:0000255|HAMAP-Rule:MF_00336}; DE AltName: Full=Dethiobiotin synthase {ECO:0000255|HAMAP-Rule:MF_00336}; GN Name=bioD {ECO:0000255|HAMAP-Rule:MF_00336}; GN OrderedLocusNames=Nmar_0823; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes a mechanistically unusual reaction, the ATP- CC dependent insertion of CO2 between the N7 and N8 nitrogen atoms of CC 7,8-diaminopelargonic acid (DAPA) to form an ureido ring. CC {ECO:0000255|HAMAP-Rule:MF_00336}. CC -!- CATALYTIC ACTIVITY: ATP + 7,8-diaminononanoate + CO(2) = ADP + CC phosphate + dethiobiotin. {ECO:0000255|HAMAP-Rule:MF_00336}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00336}; CC -!- PATHWAY: Cofactor biosynthesis; biotin biosynthesis; biotin from CC 7,8-diaminononanoate: step 1/2. {ECO:0000255|HAMAP-Rule:MF_00336}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00336}. CC -!- SIMILARITY: Belongs to the dethiobiotin synthetase family. CC {ECO:0000255|HAMAP-Rule:MF_00336}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12719.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5K8; -. DR STRING; 436308.Nmar_0823; -. DR EnsemblBacteria; ABX12719; ABX12719; Nmar_0823. DR KEGG; nmr:Nmar_0823; -. DR eggNOG; arCOG00100; Archaea. DR eggNOG; COG0132; LUCA. DR HOGENOM; HOG000275033; -. DR KO; K01935; -. DR OMA; CINHAVL; -. DR BioCyc; NMAR436308:GI3J-850-MONOMER; -. DR UniPathway; UPA00078; UER00161. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004141; F:dethiobiotin synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009102; P:biotin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00336; BioD; 1. DR InterPro; IPR004472; DTB_synth_BioD. DR InterPro; IPR027417; P-loop_NTPase. DR PIRSF; PIRSF006755; DTB_synth; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00347; bioD; 1. PE 3: Inferred from homology; KW ATP-binding; Biotin biosynthesis; Complete proteome; Cytoplasm; KW Ligase; Magnesium; Metal-binding; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 228 ATP-dependent dethiobiotin synthetase FT BioD. FT /FTId=PRO_1000133217. FT NP_BIND 114 117 ATP. {ECO:0000255|HAMAP-Rule:MF_00336}. FT NP_BIND 174 175 ATP. {ECO:0000255|HAMAP-Rule:MF_00336}. FT NP_BIND 203 205 ATP. {ECO:0000255|HAMAP-Rule:MF_00336}. FT METAL 12 12 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00336}. FT METAL 16 16 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00336}. FT METAL 53 53 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00336}. FT METAL 114 114 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00336}. FT BINDING 53 53 ATP. {ECO:0000255|HAMAP-Rule:MF_00336}. FT BINDING 210 210 ATP. {ECO:0000255|HAMAP-Rule:MF_00336}. SQ SEQUENCE 228 AA; 25223 MW; 55F21E7CC96EEEF6 CRC64; MKSIFVAGTD TDVGKTYITA GLAVALRKMN VDVGVMKPFA AGTAQKKGFK SEDVEILAKA AQVADPENLI NPQFFPIPAS PYTAWKNLKT KPKVSTILSS FKKLSKLHEM ILVEGMGGIM TPILKDYYIT NLIKEMKIPS VIVTRSKVGT VNHTIMTIQM CQKYKIPIKG IIINDFDDDG YPIKNLKRDL ESLTGVKVLG SIPFIKDMSN ASLNRIFKKN IDLKSLLK // ID CRCB_NITMS Reviewed; 126 AA. AC A9A506; DT 22-SEP-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 54. DE RecName: Full=Putative fluoride ion transporter CrcB {ECO:0000255|HAMAP-Rule:MF_00454}; GN Name=crcB {ECO:0000255|HAMAP-Rule:MF_00454}; GN OrderedLocusNames=Nmar_0015; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Important for reducing fluoride concentration in the CC cell, thus reducing its toxicity. {ECO:0000255|HAMAP- CC Rule:MF_00454}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000255|HAMAP- CC Rule:MF_00454}; Multi-pass membrane protein {ECO:0000255|HAMAP- CC Rule:MF_00454}. CC -!- SIMILARITY: Belongs to the CrcB (TC 9.B.71) family. CC {ECO:0000255|HAMAP-Rule:MF_00454}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11915.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0015; -. DR EnsemblBacteria; ABX11915; ABX11915; Nmar_0015. DR KEGG; nmr:Nmar_0015; -. DR eggNOG; arCOG04701; Archaea. DR eggNOG; COG0239; LUCA. DR HOGENOM; HOG000052573; -. DR KO; K06199; -. DR OMA; NILVINM; -. DR BioCyc; NMAR436308:GI3J-15-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0015103; F:inorganic anion transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00454; CrcB; 1. DR InterPro; IPR003691; CrcB. DR Pfam; PF02537; CRCB; 1. DR TIGRFAMs; TIGR00494; crcB; 1. PE 3: Inferred from homology; KW Cell membrane; Complete proteome; Membrane; Reference proteome; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1 126 Putative fluoride ion transporter CrcB. FT /FTId=PRO_1000206255. FT TRANSMEM 33 53 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00454}. FT TRANSMEM 64 84 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00454}. FT TRANSMEM 96 116 Helical. {ECO:0000255|HAMAP- FT Rule:MF_00454}. SQ SEQUENCE 126 AA; 13337 MW; 8BBB3D2FE600093A CRC64; MKGLEFVFLA AGSVLGAFLR YKITESPLIF NTLPLNVLIV NVIGAFILGV FIVLSQQWNL DGRYSLFAAI GFCGSLTTMS SFALDSSNLL ENNQYGALAA NIIVNVGLSI GALIGGKSLM STIISN // ID DHQS_NITMS Reviewed; 353 AA. AC A9A235; DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 43. DE RecName: Full=3-dehydroquinate synthase {ECO:0000255|HAMAP-Rule:MF_01244}; DE Short=DHQ synthase {ECO:0000255|HAMAP-Rule:MF_01244}; DE EC=1.4.1.24 {ECO:0000255|HAMAP-Rule:MF_01244}; DE AltName: Full=3-dehydroquinate synthase II {ECO:0000255|HAMAP-Rule:MF_01244}; GN Name=aroB' {ECO:0000255|HAMAP-Rule:MF_01244}; GN OrderedLocusNames=Nmar_0552; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the oxidative deamination and cyclization of CC 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3- CC dehydroquinate (DHQ), which is fed into the canonical shikimic CC pathway of aromatic amino acid biosynthesis. {ECO:0000255|HAMAP- CC Rule:MF_01244}. CC -!- CATALYTIC ACTIVITY: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate + CC H(2)O + NAD(+) = 3-dehydroquinate + NH(3) + NADH. CC {ECO:0000255|HAMAP-Rule:MF_01244}. CC -!- SIMILARITY: Belongs to the archaeal-type DHQ synthase family. CC {ECO:0000255|HAMAP-Rule:MF_01244}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12448.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0552; -. DR EnsemblBacteria; ABX12448; ABX12448; Nmar_0552. DR KEGG; nmr:Nmar_0552; -. DR eggNOG; arCOG04353; Archaea. DR eggNOG; COG1465; LUCA. DR HOGENOM; HOG000015603; -. DR KO; K11646; -. DR OMA; GDRVCID; -. DR BioCyc; NMAR436308:GI3J-574-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003856; F:3-dehydroquinate synthase activity; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016639; F:oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01244; Arch_DHQ_synthase; 1. DR InterPro; IPR002812; DHQ_synth. DR Pfam; PF01959; DHQS; 1. DR PIRSF; PIRSF006655; DHQ_synth; 1. DR ProDom; PD017907; DHQ_synth_pro-type; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; NAD; Oxidoreductase; Reference proteome. FT CHAIN 1 353 3-dehydroquinate synthase. FT /FTId=PRO_0000372056. SQ SEQUENCE 353 AA; 39049 MW; 833E2D9F54A31FC3 CRC64; MSKSRELIIA PKGSQAQLSK LLPQLEDEGI KMIYLDPKKL GKKKTKLQTV YPSNNANYVV LEKENATKPK GKKVGRKFEV LSNTDIENIL TIAKKGLDFV VVEVKDWKII PLENIIAKLH KIHTKIFAVA RTPEEVRKMF SILEVGVDGV IFNTSSINEV REAMVYLGTR SFDMKPAKII DIKEVGDGER VCVDTASMLH KGEGMLIGSR SNFLFLVHNE SVGSSFTSPR PFRVNAGAVH CYTLSPDGTT NYLSEVETGS EVLILNSKGK ARRATVGRSK IERRPMLMIK AKAGGEIGGI IAQDAETIRF VKPNGQLVSV THLKKGDTVM VHSKPATGRH FGMEVSDEYI LEK // ID DNLI_NITMS Reviewed; 588 AA. AC A9A3K1; DT 03-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 65. DE RecName: Full=DNA ligase {ECO:0000255|HAMAP-Rule:MF_00407}; DE EC=6.5.1.1 {ECO:0000255|HAMAP-Rule:MF_00407}; DE AltName: Full=Polydeoxyribonucleotide synthase [ATP] {ECO:0000255|HAMAP-Rule:MF_00407}; GN Name=lig {ECO:0000255|HAMAP-Rule:MF_00407}; GN OrderedLocusNames=Nmar_1037; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: DNA ligase that seals nicks in double-stranded DNA CC during DNA replication, DNA recombination and DNA repair. CC {ECO:0000255|HAMAP-Rule:MF_00407}. CC -!- CATALYTIC ACTIVITY: ATP + (deoxyribonucleotide)(n) + CC (deoxyribonucleotide)(m) = AMP + diphosphate + CC (deoxyribonucleotide)(n+m). {ECO:0000255|HAMAP-Rule:MF_00407}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00407}; CC -!- SIMILARITY: Belongs to the ATP-dependent DNA ligase family. CC {ECO:0000255|HAMAP-Rule:MF_00407}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12933.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3K1; -. DR STRING; 436308.Nmar_1037; -. DR EnsemblBacteria; ABX12933; ABX12933; Nmar_1037. DR KEGG; nmr:Nmar_1037; -. DR eggNOG; arCOG01347; Archaea. DR eggNOG; COG1793; LUCA. DR HOGENOM; HOG000036008; -. DR KO; K10747; -. DR OMA; SQCPNYD; -. DR BioCyc; NMAR436308:GI3J-1068-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0071897; P:DNA biosynthetic process; IEA:InterPro. DR GO; GO:0051103; P:DNA ligation involved in DNA repair; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.3260.10; -; 1. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00407; DNA_ligase; 1. DR InterPro; IPR022865; DNA_ligae_ATP-dep_bac/arc. DR InterPro; IPR000977; DNA_ligase_ATP-dep. DR InterPro; IPR012309; DNA_ligase_ATP-dep_C. DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent. DR InterPro; IPR016059; DNA_ligase_ATP-dep_CS. DR InterPro; IPR012308; DNA_ligase_ATP-dep_N. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF04679; DNA_ligase_A_C; 1. DR Pfam; PF01068; DNA_ligase_A_M; 1. DR Pfam; PF04675; DNA_ligase_A_N; 1. DR SUPFAM; SSF117018; SSF117018; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00574; dnl1; 1. DR PROSITE; PS00697; DNA_LIGASE_A1; 1. DR PROSITE; PS00333; DNA_LIGASE_A2; 1. DR PROSITE; PS50160; DNA_LIGASE_A3; 1. PE 3: Inferred from homology; KW ATP-binding; Cell cycle; Cell division; Complete proteome; DNA damage; KW DNA recombination; DNA repair; DNA replication; Ligase; Magnesium; KW Metal-binding; Nucleotide-binding; Reference proteome. FT CHAIN 1 588 DNA ligase. FT /FTId=PRO_0000365263. FT ACT_SITE 252 252 N6-AMP-lysine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_00407}. FT BINDING 250 250 ATP. {ECO:0000255|HAMAP-Rule:MF_00407}. FT BINDING 257 257 ATP. {ECO:0000255|HAMAP-Rule:MF_00407}. FT BINDING 272 272 ATP. {ECO:0000255|HAMAP-Rule:MF_00407}. FT BINDING 302 302 ATP. {ECO:0000255|HAMAP-Rule:MF_00407}. FT BINDING 342 342 ATP. {ECO:0000255|HAMAP-Rule:MF_00407}. FT BINDING 417 417 ATP. {ECO:0000255|HAMAP-Rule:MF_00407}. FT BINDING 423 423 ATP. {ECO:0000255|HAMAP-Rule:MF_00407}. SQ SEQUENCE 588 AA; 66661 MW; 60A94750BF81C85B CRC64; MEFSILADSF NKMESTRKRL ELTQYLVELF KKTPQEVISK IVYLLQGKLR PDFEGVELGV AEKLAIRAIS KSSGIPIKKI EEEYRKGGDL GHAATTILEQ KTQTTFLVED ITVERVYETL FKIAKLEGNR SQDMKMKYIS SLLNDASPLE ASFILKILLG TLRLGIAENT VMDALALAFS GNKENRKILE HAYNVSSDLG KVAEVLATEG LAEVEKFKII LFNPIRPMLA DRVKSEQEAI EKMGNEFAAE YKLDGERVQL HIEGDKVVLF SRSLENISSY YPDIIEKIPK TIQAENIVLE AEAVAINENT GEFLPFQELM HRRRKYKIEK AVTQYPITVN LFDILYCNGK SCLELDYKER REKMEKVVKE DDFVKHIPMA IVKNENDIED FFENSINAGS EGLMLKTLVS PYQAGSRGSH WLKLKREYQN ELGDSLDLVV IGGFFGKGRR TGNYGTLLLA TYEEDEDTFT SICKVGTGFS DEDLDQLYQI LNPKVTIKKN PRINSEMEAD VWFEPELVIE VVASEITLSP IHKAARDKIR KGAGLALRFP KFTGKMRVEK MAEDASTNEE VITLYQGQKK VAHDKSLM // ID DNAK_NITMS Reviewed; 636 AA. AC A9A135; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 57. DE RecName: Full=Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; DE AltName: Full=HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; DE AltName: Full=Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; DE AltName: Full=Heat shock protein 70 {ECO:0000255|HAMAP-Rule:MF_00332}; GN Name=dnaK {ECO:0000255|HAMAP-Rule:MF_00332}; GN OrderedLocusNames=Nmar_0096; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Acts as a chaperone. {ECO:0000255|HAMAP-Rule:MF_00332}. CC -!- SIMILARITY: Belongs to the heat shock protein 70 family. CC {ECO:0000255|HAMAP-Rule:MF_00332}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11996.1; -; Genomic_DNA. DR ProteinModelPortal; A9A135; -. DR SMR; A9A135; 1-513. DR STRING; 436308.Nmar_0096; -. DR PRIDE; A9A135; -. DR EnsemblBacteria; ABX11996; ABX11996; Nmar_0096. DR KEGG; nmr:Nmar_0096; -. DR eggNOG; arCOG03060; Archaea. DR eggNOG; COG0443; LUCA. DR HOGENOM; HOG000228135; -. DR KO; K04043; -. DR OMA; EMMYKDA; -. DR BioCyc; NMAR436308:GI3J-98-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 1.20.1270.10; -; 1. DR Gene3D; 2.60.34.10; -; 1. DR HAMAP; MF_00332; DnaK; 1. DR InterPro; IPR012725; Chaperone_DnaK. DR InterPro; IPR018181; Heat_shock_70_CS. DR InterPro; IPR029048; HSP70_C. DR InterPro; IPR029047; HSP70_peptide-bd. DR InterPro; IPR013126; Hsp_70_fam. DR Pfam; PF00012; HSP70; 2. DR PRINTS; PR00301; HEATSHOCK70. DR SUPFAM; SSF100920; SSF100920; 1. DR SUPFAM; SSF100934; SSF100934; 1. DR TIGRFAMs; TIGR02350; prok_dnaK; 1. DR PROSITE; PS00297; HSP70_1; 1. DR PROSITE; PS00329; HSP70_2; 1. DR PROSITE; PS01036; HSP70_3; 1. PE 3: Inferred from homology; KW ATP-binding; Chaperone; Complete proteome; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 636 Chaperone protein DnaK. FT /FTId=PRO_1000119735. SQ SEQUENCE 636 AA; 68165 MW; 32ED580704782935 CRC64; MGKVIGIDLG TSNSAAAVMM GGKPTIIPAA EGQTAAGKAF PSVVAFSKEG ELLVGEPARR QAVTNPDNTI IAAKRKMGSD YTFKIQDKEY KPQQISSFIL QKIKKDAEAF VGETVEKAVI TVPAYFDDNQ RQATKDAGTI AGLDVVRIIN EPTAASLAFG LDKAKEDMKI LVFDFGGGTL DVTIMEMGGG VFEVMSTSGD TQLGGTDMDK VLIDYIVDEF KKKEGVDLSQ DTTAMTRIRE AAEKAKIELS TVMETDVNLP FIAHDPSSGA KNLELRLTRS KLDELIGPIV DRCKPSIQKA LEDAKLSNSD INKIVMIGGP TRIPLVKKFV SEVIGKEVES GVDPMEAVAM GAAIQAGIIA GDVTSDIVLL DVTPLTLGIE TLGGVREPLI ERNTTIPTSK GKVFTTAADN QTAVTIHVVQ GERPMATDNV SLGSFNLTDL PPAPRGVPQI EVKFDIDANG IINVTAKDLG TQKEAKITIE TKTKLSEEEI EKLKEDAEKF SEEDKKKKEK IDLKNEAESY IYTTEKLVNH DLKDKISQEQ GIKITDAVKE VKEVLDKEPE ELKPKLEALQ SIVNEVTTEL YKNAAPPPGA DGQQGADGQQ GADGQQGADG QQGADGQQGA DGQTTESSSN DETKTN // ID DPO4_NITMS Reviewed; 364 AA. AC A9A3A9; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=DNA polymerase IV {ECO:0000255|HAMAP-Rule:MF_01113}; DE Short=Pol IV {ECO:0000255|HAMAP-Rule:MF_01113}; DE EC=2.7.7.7 {ECO:0000255|HAMAP-Rule:MF_01113}; GN Name=dbh {ECO:0000255|HAMAP-Rule:MF_01113}; GN OrderedLocusNames=Nmar_0642; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Poorly processive, error-prone DNA polymerase involved CC in untargeted mutagenesis. Copies undamaged DNA at stalled CC replication forks, which arise in vivo from mismatched or CC misaligned primer ends. These misaligned primers can be extended CC by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. CC May be involved in translesional synthesis. {ECO:0000255|HAMAP- CC Rule:MF_01113}. CC -!- CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = CC diphosphate + DNA(n+1). {ECO:0000255|HAMAP-Rule:MF_01113}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01113}; CC Note=Binds 2 magnesium ions per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01113}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_01113}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01113}. CC -!- SIMILARITY: Belongs to the DNA polymerase type-Y family. CC {ECO:0000255|HAMAP-Rule:MF_01113}. CC -!- SIMILARITY: Contains 1 umuC domain. {ECO:0000255|HAMAP- CC Rule:MF_01113}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12538.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3A9; -. DR STRING; 436308.Nmar_0642; -. DR EnsemblBacteria; ABX12538; ABX12538; Nmar_0642. DR KEGG; nmr:Nmar_0642; -. DR eggNOG; arCOG04582; Archaea. DR eggNOG; COG0389; LUCA. DR HOGENOM; HOG000082707; -. DR KO; K04479; -. DR OMA; VYSGRTK; -. DR BioCyc; NMAR436308:GI3J-667-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR GO; GO:0006261; P:DNA-dependent DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1490.100; -; 1. DR HAMAP; MF_01113; DNApol_IV; 1. DR InterPro; IPR017961; DNA_pol_Y-fam_little_finger. DR InterPro; IPR022880; DNApol_IV. DR InterPro; IPR024728; PolY_HhH_motif. DR InterPro; IPR001126; UmuC. DR Pfam; PF00817; IMS; 1. DR Pfam; PF11799; IMS_C; 1. DR Pfam; PF11798; IMS_HHH; 1. DR SUPFAM; SSF100879; SSF100879; 1. DR PROSITE; PS50173; UMUC; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; DNA damage; DNA repair; DNA replication; KW DNA-binding; DNA-directed DNA polymerase; Magnesium; Metal-binding; KW Mutator protein; Nucleotidyltransferase; Reference proteome; KW Transferase. FT CHAIN 1 364 DNA polymerase IV. FT /FTId=PRO_1000137144. FT DOMAIN 6 194 UmuC. {ECO:0000255|HAMAP-Rule:MF_01113}. FT ACT_SITE 112 112 {ECO:0000255|HAMAP-Rule:MF_01113}. FT METAL 10 10 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01113}. FT METAL 111 111 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01113}. FT SITE 15 15 Substrate discrimination. FT {ECO:0000255|HAMAP-Rule:MF_01113}. SQ SEQUENCE 364 AA; 41636 MW; 1C75A957DD22A6D9 CRC64; METRIVFHID FDYFYAQCEE IRSPELKSKP VCVCVFSDRG GDSGAIATAN YTARKYGAKS GIPIVFAKKR LEERKDAVFL PVDFDYYSEM SEKAMKIMEE FSDVFEYVGR DEAYLDVTKR TEGDFHKASH LAQQIKNSIR EKTKLSCSIG ISPNKLISKI ASDFQKPDGL TIVSPEKVEG FLESLKIRDI PGIGKKTEQR FTEMNLETIG DVKRLDVFTL NKEFGRKSGT YIYNAVRGID DELVKEREPS IQHGKIVTLK KDSKDYEFLL ENTLELCKEV HEIIQKKNQM FKSVGISFVQ SDLSNKTKSK MLRNPTMSLE ELEKTVEQLL REALENQTAT IRRLGVKVSE LSESQGQRDI TSYF // ID EF1B_NITMS Reviewed; 93 AA. AC A9A5W3; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 48. DE RecName: Full=Elongation factor 1-beta {ECO:0000255|HAMAP-Rule:MF_00043}; DE Short=EF-1-beta {ECO:0000255|HAMAP-Rule:MF_00043}; DE AltName: Full=aEF-1beta {ECO:0000255|HAMAP-Rule:MF_00043}; GN Name=ef1b {ECO:0000255|HAMAP-Rule:MF_00043}; GN OrderedLocusNames=Nmar_1222; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, CC thus allowing the regeneration of EF-1-alpha/GTP that could then CC be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. CC {ECO:0000255|HAMAP-Rule:MF_00043}. CC -!- SIMILARITY: Belongs to the EF-1-beta/EF-1-delta family. CC {ECO:0000255|HAMAP-Rule:MF_00043}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13118.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5W3; -. DR STRING; 436308.Nmar_1222; -. DR PRIDE; A9A5W3; -. DR EnsemblBacteria; ABX13118; ABX13118; Nmar_1222. DR KEGG; nmr:Nmar_1222; -. DR eggNOG; arCOG01988; Archaea. DR eggNOG; COG2092; LUCA. DR HOGENOM; HOG000015480; -. DR KO; K03232; -. DR OMA; LNMSRMS; -. DR BioCyc; NMAR436308:GI3J-1255-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.60; -; 1. DR HAMAP; MF_00043; EF1_beta; 1. DR InterPro; IPR014717; Transl_elong_EF1B/ribosomal_S6. DR InterPro; IPR004542; Transl_elong_EF1B_B_arc. DR InterPro; IPR014038; Transl_elong_fac_EF1B_bsu/dsu. DR Pfam; PF00736; EF1_GNE; 1. DR PIRSF; PIRSF006521; Transl_elong_EF1B_B_arc; 1. DR SMART; SM00888; EF1_GNE; 1. DR SUPFAM; SSF54984; SSF54984; 1. DR TIGRFAMs; TIGR00489; aEF-1_beta; 1. PE 3: Inferred from homology; KW Complete proteome; Elongation factor; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 93 Elongation factor 1-beta. FT /FTId=PRO_0000366439. SQ SEQUENCE 93 AA; 10400 MW; 44689E2393C62EBE CRC64; MAQLLFITKI LPEGTDVDLD KLAETLKSTL PEGIQMKRHA KEPLAFGLEF LKAEFVLEDK EGQSDALENA VKNTEGVSEF EVLNMSRMSV DMK // ID END4_NITMS Reviewed; 279 AA. AC A9A555; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 55. DE RecName: Full=Probable endonuclease 4 {ECO:0000255|HAMAP-Rule:MF_00152}; DE EC=3.1.21.2 {ECO:0000255|HAMAP-Rule:MF_00152}; DE AltName: Full=Endodeoxyribonuclease IV {ECO:0000255|HAMAP-Rule:MF_00152}; DE AltName: Full=Endonuclease IV {ECO:0000255|HAMAP-Rule:MF_00152}; GN Name=nfo {ECO:0000255|HAMAP-Rule:MF_00152}; GN OrderedLocusNames=Nmar_0064; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Endonuclease IV plays a role in DNA repair. It cleaves CC phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) CC to produce new 5'-ends that are base-free deoxyribose 5-phosphate CC residues. It preferentially attacks modified AP sites created by CC bleomycin and neocarzinostatin. {ECO:0000255|HAMAP-Rule:MF_00152}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage to 5'- CC phosphooligonucleotide end-products. {ECO:0000255|HAMAP- CC Rule:MF_00152}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00152}; CC Note=Binds 3 Zn(2+) ions. {ECO:0000255|HAMAP-Rule:MF_00152}; CC -!- SIMILARITY: Belongs to the AP endonuclease 2 family. CC {ECO:0000255|HAMAP-Rule:MF_00152}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11964.1; -; Genomic_DNA. DR ProteinModelPortal; A9A555; -. DR STRING; 436308.Nmar_0064; -. DR EnsemblBacteria; ABX11964; ABX11964; Nmar_0064. DR KEGG; nmr:Nmar_0064; -. DR eggNOG; arCOG01894; Archaea. DR eggNOG; COG0648; LUCA. DR HOGENOM; HOG000224893; -. DR KO; K01151; -. DR OMA; MKYVGAH; -. DR BioCyc; NMAR436308:GI3J-64-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008833; F:deoxyribonuclease IV (phage-T4-induced) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.150; -; 1. DR HAMAP; MF_00152; Nfo; 1. DR InterPro; IPR001719; AP_endonuc_2. DR InterPro; IPR018246; AP_endonuc_F2_Zn_BS. DR InterPro; IPR013022; Xyl_isomerase-like_TIM-brl. DR PANTHER; PTHR21445; PTHR21445; 1. DR Pfam; PF01261; AP_endonuc_2; 1. DR SMART; SM00518; AP2Ec; 1. DR SUPFAM; SSF51658; SSF51658; 1. DR TIGRFAMs; TIGR00587; nfo; 1. DR PROSITE; PS00730; AP_NUCLEASE_F2_2; 1. DR PROSITE; PS00731; AP_NUCLEASE_F2_3; 1. DR PROSITE; PS51432; AP_NUCLEASE_F2_4; 1. PE 3: Inferred from homology; KW Complete proteome; DNA damage; DNA repair; Endonuclease; Hydrolase; KW Metal-binding; Nuclease; Reference proteome; Zinc. FT CHAIN 1 279 Probable endonuclease 4. FT /FTId=PRO_1000096894. FT METAL 68 68 Zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 108 108 Zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 143 143 Zinc 1. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 143 143 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 177 177 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 180 180 Zinc 3. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 214 214 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 227 227 Zinc 3. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 229 229 Zinc 3. {ECO:0000255|HAMAP- FT Rule:MF_00152}. FT METAL 259 259 Zinc 2. {ECO:0000255|HAMAP- FT Rule:MF_00152}. SQ SEQUENCE 279 AA; 30994 MW; 7CB2E7F0C36A78D8 CRC64; MQIGCHVSIS GSIDKSVDNA VERECSAFQI FTRNPRGWHA KTLTKDDITN FKSKLKESKI DRFATCAHMP YLPNLATPKE DGFEKSVKTL VDEVERCAQL GIPYLVTHLG SHLGTGEEAG IKKLVKGLTE AGKTKNDVMI LLENTAGQKN SVGSDFKQLG EIFKQLKPAK KFGVCLDTCH AFVFGYDLRT EAKVKETFSE FDKYVGIDNL KILHLNDAKG DLGCNLDRHY HLGMGGIGEK GISAIVKFAN KKKIPIILET PIDDDRDDFE NIRKAKEFA // ID FEN_NITMS Reviewed; 340 AA. AC A9A4B0; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_00614}; DE Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_00614}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00614}; DE AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_00614}; GN Name=fen {ECO:0000255|HAMAP-Rule:MF_00614}; GN OrderedLocusNames=Nmar_0703; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Structure-specific nuclease with 5'-flap endonuclease CC and 5'-3' exonuclease activities involved in DNA replication and CC repair. During DNA replication, cleaves the 5'-overhanging flap CC structure that is generated by displacement synthesis when DNA CC polymerase encounters the 5'-end of a downstream Okazaki fragment. CC Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' CC cleavage specificity. Cleaves one nucleotide into the double- CC stranded DNA from the junction in flap DNA, leaving a nick for CC ligation. Also involved in the base excision repair (BER) pathway. CC Acts as a genome stabilization factor that prevents flaps from CC equilibrating into structures that lead to duplications and CC deletions. Also possesses 5'-3' exonuclease activity on nicked or CC gapped double-stranded DNA (By similarity). {ECO:0000250}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00614}; CC Note=Binds 2 magnesium ions per subunit. They probably participate CC in the reaction catalyzed by the enzyme. May bind an additional CC third magnesium ion after substrate binding. {ECO:0000255|HAMAP- CC Rule:MF_00614}; CC -!- SUBUNIT: Interacts with PCNA. PCNA stimulates the nuclease CC activity without altering cleavage specificity. CC {ECO:0000255|HAMAP-Rule:MF_00614}. CC -!- SIMILARITY: Belongs to the XPG/RAD2 endonuclease family. FEN1 CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00614}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12599.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4B0; -. DR STRING; 436308.Nmar_0703; -. DR EnsemblBacteria; ABX12599; ABX12599; Nmar_0703. DR KEGG; nmr:Nmar_0703; -. DR eggNOG; arCOG04050; Archaea. DR eggNOG; COG0258; LUCA. DR HOGENOM; HOG000193852; -. DR KO; K04799; -. DR OMA; GSQDYDS; -. DR BioCyc; NMAR436308:GI3J-728-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008409; F:5'-3' exonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0017108; F:5'-flap endonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR GO; GO:0043137; P:DNA replication, removal of RNA primer; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1010; -; 1. DR HAMAP; MF_00614; Fen; 1. DR InterPro; IPR020045; 5-3_exonuclease_C. DR InterPro; IPR023426; Flap_endonuc. DR InterPro; IPR019973; Flap_structure-sp_endonuc_arc. DR InterPro; IPR008918; HhH2. DR InterPro; IPR029060; PIN_domain-like. DR InterPro; IPR006086; XPG-I_dom. DR InterPro; IPR006084; XPG/Rad2. DR InterPro; IPR019974; XPG_CS. DR InterPro; IPR006085; XPG_DNA_repair_N. DR PANTHER; PTHR11081; PTHR11081; 1. DR Pfam; PF00867; XPG_I; 1. DR Pfam; PF00752; XPG_N; 1. DR PRINTS; PR00853; XPGRADSUPER. DR SMART; SM00279; HhH2; 1. DR SMART; SM00484; XPGI; 1. DR SMART; SM00485; XPGN; 1. DR SUPFAM; SSF47807; SSF47807; 1. DR SUPFAM; SSF88723; SSF88723; 1. DR TIGRFAMs; TIGR03674; fen_arch; 1. DR PROSITE; PS00841; XPG_1; 1. PE 3: Inferred from homology; KW Complete proteome; DNA damage; DNA repair; DNA replication; KW Endonuclease; Exonuclease; Hydrolase; Magnesium; Metal-binding; KW Nuclease; Reference proteome. FT CHAIN 1 340 Flap endonuclease 1. FT /FTId=PRO_1000130404. FT REGION 1 98 N-domain. FT REGION 116 258 I-domain. FT METAL 27 27 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00614}. FT METAL 80 80 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00614}. FT METAL 152 152 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00614}. FT METAL 154 154 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00614}. FT METAL 173 173 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00614}. FT METAL 175 175 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00614}. FT METAL 236 236 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00614}. SQ SEQUENCE 340 AA; 38589 MW; C18CA60FAD0C7F2D CRC64; MGLNLKDLVV REKTTLEAFS NKVIAIDAYN AIYQFLASIR GPDGLQLSDS EGRITSHLSG LLYRNVNFLS LGIKPVYVFD GKPPSLKTAE IERRKQIKMD ATIKYEKAIA DGNMEDARKY AQQTTSMKDG MVKESKQLLT YFGIPYIEAP SEGEATAAHL TNTGQAYASA SQDFDSILCG AKRLVRNFTN SGRRKIPNKN TYIDIVPEII ETQKTLDSLE LTREELIDVG ILIGTDFNPN GFERVGPKTA LKMIKQHSKL EEIPQIQEQL EEIDYQEIRK IFLNPEVADV KEIVFENVNY EGMSNYLVRE RSFSEDRVNS TLNRLKKALE KKSQNLDQWF // ID FOLD_NITMS Reviewed; 287 AA. AC A9A4N5; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=Bifunctional protein FolD {ECO:0000255|HAMAP-Rule:MF_01576}; DE Includes: DE RecName: Full=Methylenetetrahydrofolate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01576}; DE EC=1.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01576}; DE Includes: DE RecName: Full=Methenyltetrahydrofolate cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01576}; DE EC=3.5.4.9 {ECO:0000255|HAMAP-Rule:MF_01576}; GN Name=folD {ECO:0000255|HAMAP-Rule:MF_01576}; GN OrderedLocusNames=Nmar_1117; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the oxidation of 5,10- CC methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and CC then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- CC formyltetrahydrofolate. {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- CATALYTIC ACTIVITY: 5,10-methylenetetrahydrofolate + NADP(+) = CC 5,10-methenyltetrahydrofolate + NADPH. {ECO:0000255|HAMAP- CC Rule:MF_01576}. CC -!- CATALYTIC ACTIVITY: 5,10-methenyltetrahydrofolate + H(2)O = 10- CC formyltetrahydrofolate. {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- PATHWAY: One-carbon metabolism; tetrahydrofolate interconversion. CC {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01576}. CC -!- SIMILARITY: Belongs to the tetrahydrofolate CC dehydrogenase/cyclohydrolase family. {ECO:0000255|HAMAP- CC Rule:MF_01576}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13013.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N5; -. DR STRING; 436308.Nmar_1117; -. DR EnsemblBacteria; ABX13013; ABX13013; Nmar_1117. DR KEGG; nmr:Nmar_1117; -. DR eggNOG; arCOG04538; Archaea. DR eggNOG; COG0190; LUCA. DR HOGENOM; HOG000218242; -. DR KO; K01491; -. DR OMA; LMFNTIK; -. DR BioCyc; NMAR436308:GI3J-1148-MONOMER; -. DR UniPathway; UPA00193; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004477; F:methenyltetrahydrofolate cyclohydrolase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004488; F:methylenetetrahydrofolate dehydrogenase (NADP+) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009396; P:folic acid-containing compound biosynthetic process; IEA:InterPro. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009086; P:methionine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0006164; P:purine nucleotide biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0035999; P:tetrahydrofolate interconversion; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_01576; THF_DHG_CYH; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000672; THF_DH/CycHdrlase. DR InterPro; IPR020630; THF_DH/CycHdrlase_cat_dom. DR InterPro; IPR020867; THF_DH/CycHdrlase_CS. DR InterPro; IPR020631; THF_DH/CycHdrlase_NAD-bd_dom. DR Pfam; PF00763; THF_DHG_CYH; 1. DR Pfam; PF02882; THF_DHG_CYH_C; 1. DR PRINTS; PR00085; THFDHDRGNASE. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00767; THF_DHG_CYH_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Histidine biosynthesis; KW Hydrolase; Methionine biosynthesis; Multifunctional enzyme; NADP; KW One-carbon metabolism; Oxidoreductase; Purine biosynthesis; KW Reference proteome. FT CHAIN 1 287 Bifunctional protein FolD. FT /FTId=PRO_1000147500. FT NP_BIND 165 167 NADP. {ECO:0000255|HAMAP-Rule:MF_01576}. FT BINDING 190 190 NADP. {ECO:0000255|HAMAP-Rule:MF_01576}. FT BINDING 233 233 NADP; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01576}. SQ SEQUENCE 287 AA; 30956 MW; A2EC1E980BF7A433 CRC64; MTGTKIDGKV ISQSVKDRVK KAVEELKNQG INPCLATVLV GDNPASATYV RNKHRACEEV GITTKDHKLD ASTTQAQLNE IIENLNNDNS VHGILVQLPL PEQLDEFTTT SRISPLKDVD GLTPHNAGLL AMKKAALVAC TPSGVMEMFD YHGIELEGKN IVLINRSNLV GKPLYHLLLD KNATVITCHS RTKNLVELCQ SADIIITAVG DRNKFTLTSD MIKEGAIVID VAISRFQEKL VGDADYEDII QKASFATPVP GGVGPMTVAM LLKNTITAAS LSSQIGK // ID G1PDH_NITMS Reviewed; 354 AA. AC A9A2U8; DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 56. DE RecName: Full=Glycerol-1-phosphate dehydrogenase [NAD(P)+] {ECO:0000255|HAMAP-Rule:MF_00497}; DE Short=G1P dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00497}; DE Short=G1PDH {ECO:0000255|HAMAP-Rule:MF_00497}; DE EC=1.1.1.261 {ECO:0000255|HAMAP-Rule:MF_00497}; DE AltName: Full=Enantiomeric glycerophosphate synthase {ECO:0000255|HAMAP-Rule:MF_00497}; DE AltName: Full=sn-glycerol-1-phosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00497}; GN Name=egsA {ECO:0000255|HAMAP-Rule:MF_00497}; GN OrderedLocusNames=Nmar_1729; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the NAD(P)H-dependent reduction of CC dihydroxyacetonephosphate (DHAP or glycerone phosphate) to CC glycerol 1-phosphate (G1P). The G1P thus generated is used as the CC glycerophosphate backbone of phospholipids in the cellular CC membranes of Archaea. {ECO:0000255|HAMAP-Rule:MF_00497}. CC -!- CATALYTIC ACTIVITY: sn-glycerol 1-phosphate + NAD(P)(+) = CC glycerone phosphate + NAD(P)H. {ECO:0000255|HAMAP-Rule:MF_00497}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00497}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00497}; CC -!- PATHWAY: Membrane lipid metabolism; glycerophospholipid CC metabolism. {ECO:0000255|HAMAP-Rule:MF_00497}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00497}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00497}. CC -!- SIMILARITY: Belongs to the glycerol-1-phosphate dehydrogenase CC family. {ECO:0000255|HAMAP-Rule:MF_00497}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13625.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U8; -. DR STRING; 436308.Nmar_1729; -. DR EnsemblBacteria; ABX13625; ABX13625; Nmar_1729. DR KEGG; nmr:Nmar_1729; -. DR eggNOG; arCOG00982; Archaea. DR eggNOG; COG0371; LUCA. DR HOGENOM; HOG000228570; -. DR KO; K00096; -. DR OMA; YSEYAAH; -. DR BioCyc; NMAR436308:GI3J-1774-MONOMER; -. DR UniPathway; UPA00940; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0050492; F:glycerol-1-phosphate dehydrogenase [NAD(P)+] activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006650; P:glycerophospholipid metabolic process; IEA:UniProtKB-UniPathway. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00497_A; G1P_dehydrogenase_A; 1. DR InterPro; IPR023002; G1P_dehydrogenase_arc. DR InterPro; IPR032837; G1PDH. DR Pfam; PF13685; Fe-ADH_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Lipid biosynthesis; Lipid metabolism; KW Metal-binding; NAD; NADP; Oxidoreductase; Phospholipid biosynthesis; KW Phospholipid metabolism; Reference proteome; Zinc. FT CHAIN 1 354 Glycerol-1-phosphate dehydrogenase FT [NAD(P)+]. FT /FTId=PRO_0000350660. FT NP_BIND 103 107 NAD. {ECO:0000255|HAMAP-Rule:MF_00497}. FT NP_BIND 125 128 NAD. {ECO:0000255|HAMAP-Rule:MF_00497}. FT METAL 176 176 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00497}. FT METAL 255 255 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00497}. FT METAL 271 271 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00497}. FT BINDING 130 130 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00497}. FT BINDING 134 134 NAD. {ECO:0000255|HAMAP-Rule:MF_00497}. FT BINDING 176 176 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00497}. FT BINDING 259 259 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00497}. SQ SEQUENCE 354 AA; 38594 MW; 38EE02914BB39305 CRC64; MTKNQDRMKS HTMELPRQIV VGEKNINEFG EFLHNLTKPK KVSLISGIHV KKVLRQRIEK SLKTKRIKFV WHTSKDNQIS TLNRIEKEVK KDRSDMIAGI GGGRSVDTAK LISFNLDIPF VSVPTAASHD GVSSPFVSVK SDKPHSIVAT APLGVFVDID IIKKAPSRLL ASGCGDLVAN IIAVKDWQLG HQKTGEYYGT YSAELAMMSA MMVLDNSSKY AKNGLDARVI VEALISAGVA SCIAGSSRPC SGAEHLFSHA LDKIAPGKGL HGEKCGIGSI MIAKLQGQDW KKIVKTLKDV GAPTTAKQIG LTEDQIIDAL IIAQDLRPER YTILKEVEMT DRKAKSLAKS TKVI // ID GGGPS_NITMS Reviewed; 250 AA. AC A9A3Z1; DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 54. DE RecName: Full=Geranylgeranylglyceryl phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00112}; DE Short=GGGP synthase {ECO:0000255|HAMAP-Rule:MF_00112}; DE Short=GGGPS {ECO:0000255|HAMAP-Rule:MF_00112}; DE EC=2.5.1.41 {ECO:0000255|HAMAP-Rule:MF_00112}; DE AltName: Full=(S)-3-O-geranylgeranylglyceryl phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00112}; DE AltName: Full=Phosphoglycerol geranylgeranyltransferase {ECO:0000255|HAMAP-Rule:MF_00112}; GN OrderedLocusNames=Nmar_1795; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Prenyltransferase that catalyzes the transfer of the CC geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the CC C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the CC first ether-bond-formation step in the biosynthesis of archaeal CC membrane lipids. {ECO:0000255|HAMAP-Rule:MF_00112}. CC -!- CATALYTIC ACTIVITY: Geranylgeranyl diphosphate + sn-glycerol 1- CC phosphate = diphosphate + sn-3-O-(geranylgeranyl)glycerol 1- CC phosphate. {ECO:0000255|HAMAP-Rule:MF_00112}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00112}; CC -!- PATHWAY: Membrane lipid metabolism; glycerophospholipid CC metabolism. {ECO:0000255|HAMAP-Rule:MF_00112}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00112}. CC -!- SIMILARITY: Belongs to the GGGP/HepGP synthase family. CC {ECO:0000255|HAMAP-Rule:MF_00112}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13691.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Z1; -. DR STRING; 436308.Nmar_1795; -. DR EnsemblBacteria; ABX13691; ABX13691; Nmar_1795. DR KEGG; nmr:Nmar_1795; -. DR eggNOG; arCOG01085; Archaea. DR eggNOG; COG1646; LUCA. DR HOGENOM; HOG000034117; -. DR KO; K17104; -. DR OMA; EPIPMAY; -. DR BioCyc; NMAR436308:GI3J-1843-MONOMER; -. DR UniPathway; UPA00940; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0047294; F:phosphoglycerol geranylgeranyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046474; P:glycerophospholipid biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.390; -; 1. DR HAMAP; MF_00112; GGGP_HepGP_synthase; 1. DR InterPro; IPR008205; GGGP_HepGP_synthase. DR InterPro; IPR010946; GGGP_synth. DR Pfam; PF01884; PcrB; 1. DR TIGRFAMs; TIGR01769; GGGP; 1. DR TIGRFAMs; TIGR01768; GGGP-family; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Lipid biosynthesis; Lipid metabolism; KW Magnesium; Metal-binding; Phospholipid biosynthesis; KW Phospholipid metabolism; Reference proteome; Transferase. FT CHAIN 1 250 Geranylgeranylglyceryl phosphate FT synthase. FT /FTId=PRO_0000350686. FT REGION 174 176 Glycerol-1-phosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00112}. FT METAL 26 26 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00112}. FT METAL 55 55 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00112}. FT BINDING 206 206 Glycerol-1-phosphate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_00112}. SQ SEQUENCE 250 AA; 26319 MW; BCF1D0D8D7857080 CRC64; MAGNKVETFL KSELKKKNAL LFVLIDSEVS NLEASAKLAK DVEKIGASAI LVGGSSATDQ IEMAQVVKGI KKGIKIPIIL FPGNVTGVVP DADAILFSSL MNSENPYFIT QAQALGAPSV LKFGLEPLPT AYLVIGDGTT AWFVGSARGI PFEKPKIAAA YALAAQFLGM RFVYLEAGSG AKSSVTPEMV KTVRQLFNGF LIVGGGIKDV KTAQNLVKAG ADALVIGTFL EKGGSLKKLE EITKAIQRSK // ID GLYA_NITMS Reviewed; 440 AA. AC A9A3Y9; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 58. DE RecName: Full=Serine hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00051}; DE Short=SHMT {ECO:0000255|HAMAP-Rule:MF_00051}; DE Short=Serine methylase {ECO:0000255|HAMAP-Rule:MF_00051}; DE EC=2.1.2.- {ECO:0000255|HAMAP-Rule:MF_00051}; GN Name=glyA {ECO:0000255|HAMAP-Rule:MF_00051}; GN OrderedLocusNames=Nmar_1793; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the reversible interconversion of serine and CC glycine with a modified folate serving as the one-carbon carrier. CC Also exhibits a pteridine-independent aldolase activity toward CC beta-hydroxyamino acids, producing glycine and aldehydes, via a CC retro-aldol mechanism. {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00051}; CC -!- PATHWAY: Amino-acid biosynthesis; glycine biosynthesis; glycine CC from L-serine: step 1/1. {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00051}. CC -!- SIMILARITY: Belongs to the SHMT family. {ECO:0000255|HAMAP- CC Rule:MF_00051}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13689.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Y9; -. DR STRING; 436308.Nmar_1793; -. DR EnsemblBacteria; ABX13689; ABX13689; Nmar_1793. DR KEGG; nmr:Nmar_1793; -. DR eggNOG; arCOG00070; Archaea. DR eggNOG; COG0112; LUCA. DR HOGENOM; HOG000239403; -. DR KO; K00600; -. DR OMA; FDTQSPM; -. DR BioCyc; NMAR436308:GI3J-1841-MONOMER; -. DR UniPathway; UPA00288; UER01023. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004372; F:glycine hydroxymethyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019264; P:glycine biosynthetic process from serine; IEA:UniProtKB-HAMAP. DR GO; GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR HAMAP; MF_00051; SHMT; 1. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR InterPro; IPR001085; Ser_HO-MeTrfase. DR PANTHER; PTHR11680; PTHR11680; 1. DR Pfam; PF00464; SHMT; 1. DR PIRSF; PIRSF000412; SHMT; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW One-carbon metabolism; Pyridoxal phosphate; Reference proteome; KW Transferase. FT CHAIN 1 440 Serine hydroxymethyltransferase. FT /FTId=PRO_0000369972. FT REGION 123 125 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 33 33 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 53 53 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 55 55 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 63 63 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 183 183 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 211 211 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 237 237 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT BINDING 373 373 Pyridoxal phosphate. {ECO:0000255|HAMAP- FT Rule:MF_00051}. FT MOD_RES 238 238 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_00051}. SQ SEQUENCE 440 AA; 48723 MW; 6B8814341B861776 CRC64; MAKSQNKESY NKIFAKLKEH HKWFENSIPL IASENIPSPA VREAVISDFG NRYAEGWPGE RVYAGCIYID DVEFECMKLA KKLYKAKFAD VRPISGVVAN LAVYSAYSNP GDVMLAPSIP AGGHISHGKK EHSGTAGLVH GLEIEFYPFD AEEMTIDVDK TKQKVKELKK NNRLPKIAMF GGSLFLFPHP VKELSDFLKS YDMHINYDAA HVAGLIAGGK FQDPLKEGAD TMTMSTHKTL FGPQGGLVLG SEKHEEPIKK ATFPGLTSSH HINNMAGKAV AFAEALEFGK DYAAQVIKNA KSFAEALSDA GFKVLGESRG FTQSHQIAVN VLDYSDGGKV EADLEKANII VNRQLIPGDI KAGRNYFHPG GIRLGVSEIT RLGMKKNEMQ EIASFIKQVV IEKKDPKKLL SKVKSFRKNY QKVKFCFDNK LGAYEYVKLR // ID GSA_NITMS Reviewed; 424 AA. AC A9A1A0; DT 01-SEP-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 57. DE RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000255|HAMAP-Rule:MF_00375}; DE Short=GSA {ECO:0000255|HAMAP-Rule:MF_00375}; DE EC=5.4.3.8 {ECO:0000255|HAMAP-Rule:MF_00375}; DE AltName: Full=Glutamate-1-semialdehyde aminotransferase {ECO:0000255|HAMAP-Rule:MF_00375}; DE Short=GSA-AT {ECO:0000255|HAMAP-Rule:MF_00375}; GN Name=hemL {ECO:0000255|HAMAP-Rule:MF_00375}; GN OrderedLocusNames=Nmar_0490; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: (S)-4-amino-5-oxopentanoate = 5- CC aminolevulinate. {ECO:0000255|HAMAP-Rule:MF_00375}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00375}; CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step CC 2/2. {ECO:0000255|HAMAP-Rule:MF_00375}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00375}. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. HemL subfamily. {ECO:0000255|HAMAP- CC Rule:MF_00375}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12386.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1A0; -. DR STRING; 436308.Nmar_0490; -. DR EnsemblBacteria; ABX12386; ABX12386; Nmar_0490. DR KEGG; nmr:Nmar_0490; -. DR eggNOG; arCOG00918; Archaea. DR eggNOG; COG0001; LUCA. DR HOGENOM; HOG000020210; -. DR KO; K01845; -. DR OMA; EFAELIC; -. DR BioCyc; NMAR436308:GI3J-510-MONOMER; -. DR UniPathway; UPA00251; UER00317. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0042286; F:glutamate-1-semialdehyde 2,1-aminomutase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:InterPro. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR HAMAP; MF_00375; HemL_aminotrans_3; 1. DR InterPro; IPR004639; 4pyrrol_synth_GluAld_NH2Trfase. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR00713; hemL; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Isomerase; Porphyrin biosynthesis; KW Pyridoxal phosphate; Reference proteome. FT CHAIN 1 424 Glutamate-1-semialdehyde 2,1-aminomutase. FT /FTId=PRO_0000382410. FT MOD_RES 260 260 N6-(pyridoxal phosphate)lysine. FT {ECO:0000255|HAMAP-Rule:MF_00375}. SQ SEQUENCE 424 AA; 46604 MW; 40046333B8AFB473 CRC64; MSNSKLFSDA KKVIPSGVNS PVRYFEPYPF FTKKANGAYI WDVDNRKLID FCNGYGALLL GHRRKEIINS VSKQLTKGTL YCTPTEGETE LAKLIIGNFP SIDKVRLMNT GGEATMTAIR LARGFTKKKK IIKFEGCYHG AHDSVLVKAG SGSAHNGISV SDGGLDEVSK NTLVVQYNNI EDLQKTIQKN KDIAGVIVEP ILANMGLILP EKNFLSDLRK ITKENNIPLI FDEVVTGFRV APGGAQEHFG IKPDITTMAK ALSNGFAISA VGGKKEIMDL LSPGGKVYQA STFAGNPISV SAAIASIKTI NKLKNKLYSK LERFNLLFST ALDDMATDMG IPHQINFTAS MFQIFFTNKP VTNYETSKKA NAKKFQKLFR TLLKKGIFIA PSQFEVVFLS DAHTENDLNK TLDAYHLALK SVKN // ID HEM3_NITMS Reviewed; 311 AA. AC A9A1A1; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=Probable porphobilinogen deaminase {ECO:0000255|HAMAP-Rule:MF_00260}; DE Short=PBG {ECO:0000255|HAMAP-Rule:MF_00260}; DE EC=2.5.1.61 {ECO:0000255|HAMAP-Rule:MF_00260}; DE AltName: Full=Hydroxymethylbilane synthase {ECO:0000255|HAMAP-Rule:MF_00260}; DE Short=HMBS {ECO:0000255|HAMAP-Rule:MF_00260}; DE AltName: Full=Pre-uroporphyrinogen synthase {ECO:0000255|HAMAP-Rule:MF_00260}; GN Name=hemC {ECO:0000255|HAMAP-Rule:MF_00260}; GN OrderedLocusNames=Nmar_0491; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Tetrapolymerization of the monopyrrole PBG into the CC hydroxymethylbilane pre-uroporphyrinogen in several discrete CC steps. {ECO:0000255|HAMAP-Rule:MF_00260}. CC -!- CATALYTIC ACTIVITY: 4 porphobilinogen + H(2)O = CC hydroxymethylbilane + 4 NH(3). {ECO:0000255|HAMAP-Rule:MF_00260}. CC -!- COFACTOR: CC Name=dipyrromethane; Xref=ChEBI:CHEBI:60342; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00260}; CC Note=Binds 1 dipyrromethane group covalently. {ECO:0000255|HAMAP- CC Rule:MF_00260}; CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: CC step 2/4. {ECO:0000255|HAMAP-Rule:MF_00260}. CC -!- MISCELLANEOUS: The porphobilinogen subunits are added to the CC dipyrromethane group. {ECO:0000255|HAMAP-Rule:MF_00260}. CC -!- SIMILARITY: Belongs to the HMBS family. {ECO:0000255|HAMAP- CC Rule:MF_00260}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12387.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1A1; -. DR STRING; 436308.Nmar_0491; -. DR EnsemblBacteria; ABX12387; ABX12387; Nmar_0491. DR KEGG; nmr:Nmar_0491; -. DR eggNOG; arCOG04299; Archaea. DR eggNOG; COG0181; LUCA. DR HOGENOM; HOG000228587; -. DR KO; K01749; -. DR OMA; GAICIES; -. DR BioCyc; NMAR436308:GI3J-511-MONOMER; -. DR UniPathway; UPA00251; UER00319. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004418; F:hydroxymethylbilane synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.30.160.40; -; 1. DR HAMAP; MF_00260; Porphobil_deam; 1. DR InterPro; IPR000860; HemC. DR InterPro; IPR022417; Porphobilin_deaminase_N. DR InterPro; IPR022418; Porphobilinogen_deaminase_C. DR PANTHER; PTHR11557; PTHR11557; 1. DR Pfam; PF01379; Porphobil_deam; 1. DR Pfam; PF03900; Porphobil_deamC; 1. DR PIRSF; PIRSF001438; 4pyrrol_synth_OHMeBilane_synth; 1. DR PRINTS; PR00151; PORPHBDMNASE. DR SUPFAM; SSF54782; SSF54782; 1. DR TIGRFAMs; TIGR00212; hemC; 1. PE 3: Inferred from homology; KW Complete proteome; Porphyrin biosynthesis; Reference proteome; KW Transferase. FT CHAIN 1 311 Probable porphobilinogen deaminase. FT /FTId=PRO_1000114166. FT MOD_RES 237 237 S-(dipyrrolylmethanemethyl)cysteine. FT {ECO:0000255|HAMAP-Rule:MF_00260}. SQ SEQUENCE 311 AA; 34011 MW; 0C4072B4CEF6BC51 CRC64; MKYIVGARGS QLSVAQTNLV IAELKKAHPD TEYEIKTITT KGDTDSRPLF TIDQKGIFEK EIDRAVAQKE VDFAVHSLKD VPSELDDNLV LACIPKRETV NDVFISPDGS TLDSIKPGSV IGTSSLRRAV QVSRKRPDVT VKPIRGNIET RIKKASGENY DAIVLAKAGI SRLGVDVKYT ELSTDDFSPS PGQGAIAIVA RADDSKTIEM LKKIEDPDSR LEIEAERALS DFVDSGCRFP VGAYAKSNGS EMTLTVTAFS VDGKQFLHVS KTGDKNNPKS LGQSAGEELR EKGVNDLALN WREKVEEWNK T // ID HIS6_NITMS Reviewed; 266 AA. AC A9A5X0; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 55. DE RecName: Full=Imidazole glycerol phosphate synthase subunit HisF {ECO:0000255|HAMAP-Rule:MF_01013}; DE EC=4.1.3.- {ECO:0000255|HAMAP-Rule:MF_01013}; DE AltName: Full=IGP synthase cyclase subunit {ECO:0000255|HAMAP-Rule:MF_01013}; DE AltName: Full=IGP synthase subunit HisF {ECO:0000255|HAMAP-Rule:MF_01013}; DE AltName: Full=ImGP synthase subunit HisF {ECO:0000255|HAMAP-Rule:MF_01013}; DE Short=IGPS subunit HisF {ECO:0000255|HAMAP-Rule:MF_01013}; GN Name=hisF {ECO:0000255|HAMAP-Rule:MF_01013}; GN OrderedLocusNames=Nmar_1552; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: IGPS catalyzes the conversion of PRFAR and glutamine to CC IGP, AICAR and glutamate. The HisF subunit catalyzes the CC cyclization activity that produces IGP and AICAR from PRFAR using CC the ammonia provided by the HisH subunit. {ECO:0000255|HAMAP- CC Rule:MF_01013}. CC -!- CATALYTIC ACTIVITY: 5-[(5-phospho-1-deoxyribulos-1- CC ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4- CC carboxamide + L-glutamine = imidazole-glycerol phosphate + 5- CC aminoimidazol-4-carboxamide ribonucleotide + L-glutamate + H(2)O. CC {ECO:0000255|HAMAP-Rule:MF_01013}. CC -!- PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L- CC histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9. CC {ECO:0000255|HAMAP-Rule:MF_01013}. CC -!- SUBUNIT: Heterodimer of HisH and HisF. {ECO:0000255|HAMAP- CC Rule:MF_01013}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01013}. CC -!- SIMILARITY: Belongs to the HisA/HisF family. {ECO:0000255|HAMAP- CC Rule:MF_01013}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13448.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X0; -. DR SMR; A9A5X0; 1-266. DR STRING; 436308.Nmar_1552; -. DR EnsemblBacteria; ABX13448; ABX13448; Nmar_1552. DR KEGG; nmr:Nmar_1552; -. DR eggNOG; arCOG00617; Archaea. DR eggNOG; COG0107; LUCA. DR HOGENOM; HOG000224612; -. DR KO; K02500; -. DR OMA; KGTNFVN; -. DR BioCyc; NMAR436308:GI3J-1595-MONOMER; -. DR UniPathway; UPA00031; UER00010. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000107; F:imidazoleglycerol-phosphate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01013; HisF; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR006062; His_biosynth. DR InterPro; IPR004651; HisF. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF00977; His_biosynth; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR TIGRFAMs; TIGR00735; hisF; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW Histidine biosynthesis; Lyase; Reference proteome. FT CHAIN 1 266 Imidazole glycerol phosphate synthase FT subunit HisF. FT /FTId=PRO_1000190607. FT ACT_SITE 11 11 {ECO:0000255|HAMAP-Rule:MF_01013}. FT ACT_SITE 130 130 {ECO:0000255|HAMAP-Rule:MF_01013}. SQ SEQUENCE 266 AA; 28928 MW; C6204270E0864786 CRC64; MLTKRIIPCL DVDNGRVVKG LNFESIKDAG DPVELAAKYS KDGADELVFL DITASQEKRK TIKELVSNVA KVIDIPFTVG GGVNSMDDAR NILLSGADKV GVNTGAVKNP ELLTELMTIF GKQCVVVAID AKRNYSEDST KTMFEENGKK FWFEVFIYGG KQETGLDAIQ WAKKATELGA GEVLLTSIDK DGTKDGYDIL LTKKIVDTVS VPVIASGGCG KPEDMSEIFV KSDVDAALAA SIFHYENQSV NQVKKILRDK NISVRL // ID HFLX_NITMS Reviewed; 371 AA. AC A9A623; DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 59. DE RecName: Full=GTPase HflX {ECO:0000255|HAMAP-Rule:MF_00900}; DE AltName: Full=GTP-binding protein HflX {ECO:0000255|HAMAP-Rule:MF_00900}; GN Name=hflX {ECO:0000255|HAMAP-Rule:MF_00900}; GN OrderedLocusNames=Nmar_1605; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: GTPase that associates with the 50S ribosomal subunit CC and may have a role during protein synthesis or ribosome CC biogenesis. {ECO:0000255|HAMAP-Rule:MF_00900}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00900}; CC -!- SUBUNIT: Monomer. Associates with the 50S ribosomal subunit. CC {ECO:0000255|HAMAP-Rule:MF_00900}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00900}. CC Note=May associate with membranes. {ECO:0000255|HAMAP- CC Rule:MF_00900}. CC -!- SIMILARITY: Belongs to the TRAFAC class OBG-HflX-like GTPase CC superfamily. HflX GTPase family. {ECO:0000255|HAMAP- CC Rule:MF_00900}. CC -!- SIMILARITY: Contains 1 Hflx-type G (guanine nucleotide-binding) CC domain. {ECO:0000255|HAMAP-Rule:MF_00900}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13501.1; -; Genomic_DNA. DR ProteinModelPortal; A9A623; -. DR STRING; 436308.Nmar_1605; -. DR EnsemblBacteria; ABX13501; ABX13501; Nmar_1605. DR KEGG; nmr:Nmar_1605; -. DR eggNOG; arCOG00353; Archaea. DR eggNOG; COG2262; LUCA. DR HOGENOM; HOG000260368; -. DR KO; K03665; -. DR OMA; KWQLVLE; -. DR BioCyc; NMAR436308:GI3J-1649-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00900; GTPase_HflX; 1. DR InterPro; IPR030394; G_HFLX_dom. DR InterPro; IPR032305; GTP-bd_M. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR016496; GTPase_HflX. DR InterPro; IPR025121; GTPase_HflX_N. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR10229; PTHR10229; 1. DR Pfam; PF16360; GTP-bdg_M; 1. DR Pfam; PF13167; GTP-bdg_N; 1. DR Pfam; PF01926; MMR_HSR1; 1. DR PIRSF; PIRSF006809; GTP-binding_hflX_prd; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR03156; GTP_HflX; 1. DR PROSITE; PS51705; G_HFLX; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; GTP-binding; Magnesium; Metal-binding; KW Nucleotide-binding; Reference proteome. FT CHAIN 1 371 GTPase HflX. FT /FTId=PRO_0000412666. FT DOMAIN 184 355 Hflx-type G. {ECO:0000255|HAMAP- FT Rule:MF_00900}. FT NP_BIND 190 197 GTP. {ECO:0000255|HAMAP-Rule:MF_00900}. FT NP_BIND 215 219 GTP. {ECO:0000255|HAMAP-Rule:MF_00900}. FT NP_BIND 236 239 GTP. {ECO:0000255|HAMAP-Rule:MF_00900}. FT NP_BIND 304 307 GTP. {ECO:0000255|HAMAP-Rule:MF_00900}. FT NP_BIND 333 335 GTP. {ECO:0000255|HAMAP-Rule:MF_00900}. FT METAL 197 197 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00900}. FT METAL 217 217 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00900}. SQ SEQUENCE 371 AA; 42035 MW; 6C9508383DD22C5D CRC64; MKSAILITYD KEDVINEAKG LCDAAGFQVV HTIKQKFLKR PKYGISGGIL ERLEEISEKI RPDVIVFDEV LKPSQNYNLA AALHREILDR EALILEIFES RASSAESKLQ VKLAQLRYEM ARAKEKVRLS SMGEQPGFMG IGKFEVDVYY NDIKHRMNTV RSKLEKAGKQ RELHRQGRKR MGFKTISLAG YTSAGKTTLF NMMTGETRDQ SSELFTTLST TTRRVSINQE PFLISDTVGF ISKLPAYMID AFKSTLEELG HTDIIIVVID IGDSIFELKK KFSSCMRTLS ELGVEKDRMV YALNKSDLLE HSEIEEKIET LNLVDNKKWI PVSAKTGKNV KQLKELIGDI LESHNSHKFG KKIGVEETFG N // ID HIS3_NITMS Reviewed; 108 AA. AC A9A5W9; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=Phosphoribosyl-AMP cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01021}; DE Short=PRA-CH {ECO:0000255|HAMAP-Rule:MF_01021}; DE EC=3.5.4.19 {ECO:0000255|HAMAP-Rule:MF_01021}; GN Name=hisI {ECO:0000255|HAMAP-Rule:MF_01021}; GN OrderedLocusNames=Nmar_1551; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the hydrolysis of the adenine ring of CC phosphoribosyl-AMP. {ECO:0000255|HAMAP-Rule:MF_01021}. CC -!- CATALYTIC ACTIVITY: 1-(5-phospho-beta-D-ribosyl)-AMP + H(2)O = 1- CC (5-phospho-beta-D-ribosyl)-5-((5-phospho-beta-D- CC ribosylamino)methylideneamino)imidazole-4-carboxamide. CC {ECO:0000255|HAMAP-Rule:MF_01021}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01021}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01021}; CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01021}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01021}; CC -!- PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L- CC histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9. CC {ECO:0000255|HAMAP-Rule:MF_01021}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01021}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01021}. CC -!- SIMILARITY: Belongs to the PRA-CH family. {ECO:0000255|HAMAP- CC Rule:MF_01021}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13447.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5W9; -. DR STRING; 436308.Nmar_1551; -. DR EnsemblBacteria; ABX13447; ABX13447; Nmar_1551. DR KEGG; nmr:Nmar_1551; -. DR eggNOG; arCOG02676; Archaea. DR eggNOG; COG0139; LUCA. DR HOGENOM; HOG000277504; -. DR OMA; GPACHTN; -. DR BioCyc; NMAR436308:GI3J-1594-MONOMER; -. DR UniPathway; UPA00031; UER00008. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004635; F:phosphoribosyl-AMP cyclohydrolase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01021; HisI; 1. DR InterPro; IPR026660; PRA-CH. DR InterPro; IPR002496; PRib_AMP_CycHydrolase_dom. DR Pfam; PF01502; PRA-CH; 1. DR ProDom; PD002610; PRA_CycHdrlase; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW Histidine biosynthesis; Hydrolase; Magnesium; Metal-binding; KW Reference proteome; Zinc. FT CHAIN 1 108 Phosphoribosyl-AMP cyclohydrolase. FT /FTId=PRO_1000135357. FT METAL 78 78 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01021}. FT METAL 79 79 Zinc; shared with dimeric partner. FT {ECO:0000255|HAMAP-Rule:MF_01021}. FT METAL 80 80 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01021}. FT METAL 82 82 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01021}. FT METAL 95 95 Zinc; shared with dimeric partner. FT {ECO:0000255|HAMAP-Rule:MF_01021}. FT METAL 102 102 Zinc; shared with dimeric partner. FT {ECO:0000255|HAMAP-Rule:MF_01021}. SQ SEQUENCE 108 AA; 12282 MW; D123F8F694B40B31 CRC64; MDKTIDDIDF EKSGGLVPVI VQDANTKEVL TLAYSNRESL ELAKKTRKSW FYSRSRNKLW MKGEESGNTQ EIKEILVDCD SDAIIYLVEP SGPACHTGER VCFHNELK // ID HIS4_NITMS Reviewed; 236 AA. AC A9A5X1; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 53. DE RecName: Full=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000255|HAMAP-Rule:MF_01014}; DE EC=5.3.1.16 {ECO:0000255|HAMAP-Rule:MF_01014}; DE AltName: Full=Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000255|HAMAP-Rule:MF_01014}; GN Name=hisA {ECO:0000255|HAMAP-Rule:MF_01014}; GN OrderedLocusNames=Nmar_1553; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: 1-(5-phospho-beta-D-ribosyl)-5-((5-phospho- CC beta-D-ribosylamino)methylideneamino)imidazole-4-carboxamide = 5- CC ((5-phospho-1-deoxy-D-ribulos-1-ylamino)methylideneamino)-1-(5- CC phospho-beta-D-ribosyl)imidazole-4-carboxamide. CC {ECO:0000255|HAMAP-Rule:MF_01014}. CC -!- PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L- CC histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 4/9. CC {ECO:0000255|HAMAP-Rule:MF_01014}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01014}. CC -!- SIMILARITY: Belongs to the HisA/HisF family. {ECO:0000255|HAMAP- CC Rule:MF_01014}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13449.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X1; -. DR STRING; 436308.Nmar_1553; -. DR EnsemblBacteria; ABX13449; ABX13449; Nmar_1553. DR KEGG; nmr:Nmar_1553; -. DR eggNOG; arCOG00618; Archaea. DR eggNOG; COG0106; LUCA. DR HOGENOM; HOG000224614; -. DR KO; K01814; -. DR OMA; EWLHLVD; -. DR BioCyc; NMAR436308:GI3J-1596-MONOMER; -. DR UniPathway; UPA00031; UER00009. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003949; F:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01014; HisA; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR006062; His_biosynth. DR InterPro; IPR006063; HisA. DR InterPro; IPR023016; Isoase_HisA. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF00977; His_biosynth; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR TIGRFAMs; TIGR00007; TIGR00007; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; KW Histidine biosynthesis; Isomerase; Reference proteome. FT CHAIN 1 236 1-(5-phosphoribosyl)-5-[(5- FT phosphoribosylamino)methylideneamino] FT imidazole-4-carboxamide isomerase. FT /FTId=PRO_1000135133. FT ACT_SITE 8 8 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01014}. FT ACT_SITE 128 128 Proton donor. {ECO:0000255|HAMAP- FT Rule:MF_01014}. SQ SEQUENCE 236 AA; 25960 MW; EEAC72DBB0D0274A CRC64; MKIIPAIDLM DGQVVRLYKG DPKQKTVYSD DPVSVAKKWQ KAGADMLHIV DLDATIGTGS NLDLIEKISK ELSIPVEVAG GLRNEEIIDR AISFSNRVVI GTMAFKDKEM LQRIAKKYDF SKIVISVDHI DGFIVTHGWQ ESTKTPLLDA INEFVSMGFT EFLLTNVSKD GTLEGPDLEY LEKACAVQNA NVIASGGISN IDDVSDVQRK NAFAVILGKA LYENKISIEE AKQLVN // ID IF6_NITMS Reviewed; 221 AA. AC A9A305; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 46. DE RecName: Full=Translation initiation factor 6 {ECO:0000255|HAMAP-Rule:MF_00032}; DE Short=aIF-6 {ECO:0000255|HAMAP-Rule:MF_00032}; GN Name=eif6 {ECO:0000255|HAMAP-Rule:MF_00032}; GN OrderedLocusNames=Nmar_0237; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to the 50S ribosomal subunit and prevents its CC association with the 30S ribosomal subunit to form the 70S CC initiation complex. {ECO:0000255|HAMAP-Rule:MF_00032}. CC -!- SIMILARITY: Belongs to the eIF-6 family. {ECO:0000255|HAMAP- CC Rule:MF_00032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12133.1; -; Genomic_DNA. DR ProteinModelPortal; A9A305; -. DR STRING; 436308.Nmar_0237; -. DR EnsemblBacteria; ABX12133; ABX12133; Nmar_0237. DR KEGG; nmr:Nmar_0237; -. DR eggNOG; arCOG04176; Archaea. DR eggNOG; COG1976; LUCA. DR HOGENOM; HOG000230604; -. DR KO; K03264; -. DR OMA; ANDYGAI; -. DR BioCyc; NMAR436308:GI3J-243-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043022; F:ribosome binding; IEA:InterPro. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR GO; GO:0042256; P:mature ribosome assembly; IEA:InterPro. DR HAMAP; MF_00032; eIF_6; 1. DR InterPro; IPR002769; eIF6. DR PANTHER; PTHR10784; PTHR10784; 1. DR Pfam; PF01912; eIF-6; 1. DR PIRSF; PIRSF006413; IF-6; 1. DR SMART; SM00654; eIF6; 1. DR TIGRFAMs; TIGR00323; eIF-6; 1. PE 3: Inferred from homology; KW Complete proteome; Initiation factor; Protein biosynthesis; KW Reference proteome. FT CHAIN 1 221 Translation initiation factor 6. FT /FTId=PRO_1000090395. SQ SEQUENCE 221 AA; 23912 MW; 55F4725E0D802D88 CRC64; MDIIKFDVYR GPNIGVYISV NDNTILLPMG FAKTKAEKLA KYLGVNYLFT SIANTRLIGA LCIMNNKGIL LPKTAYQNEF DFLKKELDLE VGVLDSKLTA LGNVICANDK GAVVSPWLSK EDCQTISDVL GVETIQKKIA GFNQTGVVMV ANNSGAAIHP EADEEDMKTF SNLLGVKIEQ SSINNGIPYV SSGILANNNC IIVGSLTTGP EIMMLTRAFL N // ID ILVC_NITMS Reviewed; 332 AA. AC A9A2E4; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 58. DE RecName: Full=Ketol-acid reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00435}; DE EC=1.1.1.86 {ECO:0000255|HAMAP-Rule:MF_00435}; DE AltName: Full=Acetohydroxy-acid isomeroreductase {ECO:0000255|HAMAP-Rule:MF_00435}; DE AltName: Full=Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00435}; GN Name=ilvC {ECO:0000255|HAMAP-Rule:MF_00435}; GN OrderedLocusNames=Nmar_0959; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: (2R)-2,3-dihydroxy-3-methylbutanoate + NADP(+) CC = (2S)-2-hydroxy-2-methyl-3-oxobutanoate + NADPH. CC {ECO:0000255|HAMAP-Rule:MF_00435}. CC -!- CATALYTIC ACTIVITY: (2R,3R)-2,3-dihydroxy-3-methylpentanoate + CC NADP(+) = (S)-2-hydroxy-2-ethyl-3-oxobutanoate + NADPH. CC {ECO:0000255|HAMAP-Rule:MF_00435}. CC -!- PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L- CC isoleucine from 2-oxobutanoate: step 2/4. {ECO:0000255|HAMAP- CC Rule:MF_00435}. CC -!- PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine CC from pyruvate: step 2/4. {ECO:0000255|HAMAP-Rule:MF_00435}. CC -!- SIMILARITY: Belongs to the ketol-acid reductoisomerase family. CC {ECO:0000255|HAMAP-Rule:MF_00435}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12855.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E4; -. DR STRING; 436308.Nmar_0959; -. DR EnsemblBacteria; ABX12855; ABX12855; Nmar_0959. DR KEGG; nmr:Nmar_0959; -. DR eggNOG; arCOG04465; Archaea. DR eggNOG; COG0059; LUCA. DR HOGENOM; HOG000016230; -. DR KO; K00053; -. DR OMA; FETCHEL; -. DR BioCyc; NMAR436308:GI3J-987-MONOMER; -. DR UniPathway; UPA00047; UER00056. DR UniPathway; UPA00049; UER00060. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004455; F:ketol-acid reductoisomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009099; P:valine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1040.10; -; 1. DR HAMAP; MF_00435; IlvC; 1. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR013328; 6PGD_dom_2. DR InterPro; IPR000506; AcH_isomrdctse_C. DR InterPro; IPR013116; IlvN. DR InterPro; IPR013023; Ketol-acid_reductoisomrdctse. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR21371; PTHR21371; 1. DR Pfam; PF01450; IlvC; 1. DR Pfam; PF07991; IlvN; 1. DR SUPFAM; SSF48179; SSF48179; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR00465; ilvC; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Branched-chain amino acid biosynthesis; KW Complete proteome; NADP; Oxidoreductase; Reference proteome. FT CHAIN 1 332 Ketol-acid reductoisomerase. FT /FTId=PRO_1000124313. FT ACT_SITE 108 108 {ECO:0000255|HAMAP-Rule:MF_00435}. SQ SEQUENCE 332 AA; 36962 MW; F39D2836C872BBD9 CRC64; MAQTWKDTDI SLDPIKDQTI AVIGYGIQGD AQANNMKDSG LNVIIGLKEG GNSWKKAEAD GHKVMSVADA TKQADIIHIL IPDMIQGQVY KDEIGPNLSE GKALSFSHAA AIYWKWIEAP NNVDLIMIAP KGPGSKVRET YLDNFGTPAI VAVEQDFTGK AWDRTLGIAK AIGSARAGLI KTAFKEEVET DWFGEQADLC GGAASMVTNA FETLVEAGYQ PEIAYFEVLH ELKLIVDMIQ RYGINGMWRR VSETARYGGL TRGPMVMDSA NKENMKKVLT MIQDGTFNNE WISEYQKNGK DAFDKYMKQY DEHQIEKVGK EMRKMMWPDS TE // ID IMDH_NITMS Reviewed; 476 AA. AC A9A5Y7; DT 22-FEB-2012, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 53. DE RecName: Full=Inosine-5'-monophosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01964}; DE Short=IMP dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01964}; DE Short=IMPD {ECO:0000255|HAMAP-Rule:MF_01964}; DE Short=IMPDH {ECO:0000255|HAMAP-Rule:MF_01964}; DE EC=1.1.1.205 {ECO:0000255|HAMAP-Rule:MF_01964}; GN Name=guaB {ECO:0000255|HAMAP-Rule:MF_01964}; GN OrderedLocusNames=Nmar_1569; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of inosine 5'-phosphate (IMP) CC to xanthosine 5'-phosphate (XMP), the first committed and rate- CC limiting step in the de novo synthesis of guanine nucleotides, and CC therefore plays an important role in the regulation of cell CC growth. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- CATALYTIC ACTIVITY: Inosine 5'-phosphate + NAD(+) + H(2)O = CC xanthosine 5'-phosphate + NADH. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- COFACTOR: CC Name=K(+); Xref=ChEBI:CHEBI:29103; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01964}; CC -!- ENZYME REGULATION: Mycophenolic acid (MPA) is a non-competitive CC inhibitor that prevents formation of the closed enzyme CC conformation by binding to the same site as the amobile flap. In CC contrast, mizoribine monophosphate (MZP) is a competitive CC inhibitor that induces the closed conformation. MPA is a potent CC inhibitor of mammalian IMPDHs but a poor inhibitor of the CC bacterial enzymes. MZP is a more potent inhibitor of bacterial CC IMPDH. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- PATHWAY: Purine metabolism; XMP biosynthesis via de novo pathway; CC XMP from IMP: step 1/1. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_01964}. CC -!- SIMILARITY: Belongs to the IMPDH/GMPR family. {ECO:0000255|HAMAP- CC Rule:MF_01964}. CC -!- SIMILARITY: Contains 2 CBS domains. {ECO:0000255|HAMAP- CC Rule:MF_01964}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13465.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y7; -. DR STRING; 436308.Nmar_1569; -. DR EnsemblBacteria; ABX13465; ABX13465; Nmar_1569. DR KEGG; nmr:Nmar_1569; -. DR eggNOG; arCOG00612; Archaea. DR eggNOG; ENOG4102U9W; Archaea. DR eggNOG; COG0516; LUCA. DR eggNOG; COG0517; LUCA. DR HOGENOM; HOG000165755; -. DR KO; K00088; -. DR OMA; SSMGYCG; -. DR BioCyc; NMAR436308:GI3J-1613-MONOMER; -. DR UniPathway; UPA00601; UER00295. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003938; F:IMP dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006177; P:GMP biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01964; IMPDH; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR000644; CBS_dom. DR InterPro; IPR005990; IMP_DH. DR InterPro; IPR015875; IMP_DH/GMP_Rdtase_CS. DR InterPro; IPR001093; IMP_DH_GMPRt. DR PANTHER; PTHR11911:SF6; PTHR11911:SF6; 2. DR Pfam; PF00571; CBS; 2. DR Pfam; PF00478; IMPDH; 1. DR PIRSF; PIRSF000130; IMPDH; 1. DR SMART; SM00116; CBS; 2. DR TIGRFAMs; TIGR01302; IMP_dehydrog; 1. DR PROSITE; PS51371; CBS; 2. DR PROSITE; PS00487; IMP_DH_GMP_RED; 1. PE 3: Inferred from homology; KW CBS domain; Complete proteome; GMP biosynthesis; Metal-binding; NAD; KW Oxidoreductase; Potassium; Purine biosynthesis; Reference proteome; KW Repeat. FT CHAIN 1 476 Inosine-5'-monophosphate dehydrogenase. FT /FTId=PRO_0000415694. FT DOMAIN 92 150 CBS 1. {ECO:0000255|HAMAP-Rule:MF_01964}. FT DOMAIN 151 207 CBS 2. {ECO:0000255|HAMAP-Rule:MF_01964}. FT NP_BIND 294 296 NAD. {ECO:0000255|HAMAP-Rule:MF_01964}. FT REGION 334 336 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_01964}. FT REGION 357 358 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_01964}. FT REGION 381 385 IMP binding. {ECO:0000255|HAMAP- FT Rule:MF_01964}. FT ACT_SITE 301 301 Thioimidate intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 296 296 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 298 298 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 301 301 Potassium; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 467 467 Potassium; via carbonyl oxygen; shared FT with tetrameric partner. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT METAL 468 468 Potassium; via carbonyl oxygen; shared FT with tetrameric partner. FT {ECO:0000255|HAMAP-Rule:MF_01964}. FT BINDING 244 244 NAD. {ECO:0000255|HAMAP-Rule:MF_01964}. FT BINDING 299 299 IMP. {ECO:0000255|HAMAP-Rule:MF_01964}. FT BINDING 413 413 IMP. {ECO:0000255|HAMAP-Rule:MF_01964}. SQ SEQUENCE 476 AA; 50130 MW; 19BE67B0C7883900 CRC64; MEFKEGLTFD DVLLVPKYSD ITSRSQTDLT TKLSRNITIN IPFVSANMDT VTESSMAVAM ARAGGIGIIH RFLTIQEQAN EVLKVKRSGS VMIENPYSIS SDKSIQDALD YAEDKEISGL LVVDSNSKLV GIVTERDLLF AGSNGTIADV MTKDVVTAKP GVSLDEAKDI LHKHRIEKLP IVDDSGIIQG LITSKDITNN TDYPNASKDK KGRPLVGAAV GVKGDFLERS ESLLNAGADV LVVDIAHGHS ENAISTVRNI KKAFPDCELI AGNIATAQGA EDLIKAGVDA VKVGVGSGSI CITRVITGSG VPQLTAVMDC AKIGNDHGIP IISDGGTRTS GDATKALAAG ASSVMVGSML GGTDESPGTV LTKNGKRFKV YRGMASLAAS IGRKSKETGS ISLEDDLNDY VAEGVEAMVP YKGTVTDILK QLAGGVRSGL SYCGAHTIPQ MQQNAEFIKM SRAGFAESQP HDVLLM // ID MDH_NITMS Reviewed; 304 AA. AC A9A450; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE RecName: Full=Malate dehydrogenase {ECO:0000250|UniProtKB:O08349}; DE EC=1.1.1.37 {ECO:0000250|UniProtKB:O08349}; GN Name=mdh; OrderedLocusNames=Nmar_0338; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the reversible oxidation of malate to CC oxaloacetate. {ECO:0000250|UniProtKB:O08349}. CC -!- CATALYTIC ACTIVITY: (S)-malate + NAD(+) = oxaloacetate + NADH. CC {ECO:0000250|UniProtKB:O08349}. CC -!- SIMILARITY: Belongs to the LDH/MDH superfamily. {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12234.1; -; Genomic_DNA. DR ProteinModelPortal; A9A450; -. DR STRING; 436308.Nmar_0338; -. DR EnsemblBacteria; ABX12234; ABX12234; Nmar_0338. DR KEGG; nmr:Nmar_0338; -. DR eggNOG; arCOG00246; Archaea. DR eggNOG; COG0039; LUCA. DR HOGENOM; HOG000213794; -. DR KO; K00024; -. DR OMA; CATNTGF; -. DR BioCyc; NMAR436308:GI3J-353-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030060; F:L-malate dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR GO; GO:0006108; P:malate metabolic process; IEA:InterPro. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.110.10; -; 1. DR InterPro; IPR001557; L-lactate/malate_DH. DR InterPro; IPR022383; Lactate/malate_DH_C. DR InterPro; IPR001236; Lactate/malate_DH_N. DR InterPro; IPR015955; Lactate_DH/Glyco_Ohase_4_C. DR InterPro; IPR011275; Malate_DH_type3. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR11540; PTHR11540; 1. DR Pfam; PF02866; Ldh_1_C; 1. DR Pfam; PF00056; Ldh_1_N; 1. DR PIRSF; PIRSF000102; Lac_mal_DH; 1. DR PRINTS; PR00086; LLDHDRGNASE. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF56327; SSF56327; 1. PE 3: Inferred from homology; KW Complete proteome; NAD; Oxidoreductase; Reference proteome; KW Tricarboxylic acid cycle. FT CHAIN 1 304 Malate dehydrogenase. FT /FTId=PRO_1000126142. FT NP_BIND 6 11 NAD. {ECO:0000250|UniProtKB:O08349}. FT NP_BIND 116 118 NAD. {ECO:0000250|UniProtKB:O08349}. FT ACT_SITE 173 173 Proton acceptor. FT {ECO:0000250|UniProtKB:P61889}. FT BINDING 31 31 NAD. {ECO:0000250|UniProtKB:O08349}. FT BINDING 80 80 Substrate. FT {ECO:0000250|UniProtKB:P61889}. FT BINDING 86 86 Substrate. FT {ECO:0000250|UniProtKB:P61889}. FT BINDING 93 93 NAD. {ECO:0000250|UniProtKB:O08349}. FT BINDING 118 118 Substrate. FT {ECO:0000250|UniProtKB:P61889}. FT BINDING 149 149 Substrate. FT {ECO:0000250|UniProtKB:P61889}. SQ SEQUENCE 304 AA; 32783 MW; CCD4FA954CD3A944 CRC64; MITIIGSGKV GGDAALFSAL KRLDDQILLL DVAEGLPQGE AMDINHMLSE QGIDVEVKGS NNFEDMKGSN IVVVVAGSGR KPGMTRMDLL KINASIVKSV VENVKKYADD SMIIPVTNPL DPMAYITYKV SGFDRSRVFG MGGMLDLSRF RQFIHEATGH SRDSIRALVI GEHGENMLPL PRFSSVSGIP LPSLLPKEKL EELVQNTKQV AAKVIELKGA TVHAPGNAIS AIVEAVVRDR KQVIPVATYL DGEYDHSDVT IGVPAVIGKN GVEKIIELDL NDEEKQVFNK AVENVKGALS GVEI // ID MPNS_NITMS Reviewed; 457 AA. AC A9A1T2; DT 03-APR-2013, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 43. DE RecName: Full=Methylphosphonate synthase; DE EC=1.13.11.73; GN Name=mpnS; OrderedLocusNames=Nmar_0155; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. RN [2] RP FUNCTION, CATALYTIC ACTIVITY, PATHWAY, AND COFACTOR. RC STRAIN=SCM1; RX PubMed=22936780; DOI=10.1126/science.1219875; RA Metcalf W.W., Griffin B.M., Cicchillo R.M., Gao J., Janga S.C., RA Cooke H.A., Circello B.T., Evans B.S., Martens-Habbena W., Stahl D.A., RA van der Donk W.A.; RT "Synthesis of methylphosphonic acid by marine microbes: a source for RT methane in the aerobic ocean."; RL Science 337:1104-1107(2012). CC -!- FUNCTION: Catalyzes the conversion of 2-hydroxyethylphosphonate CC into methylphosphonate in the methylphosphonate biosynthesis CC pathway. {ECO:0000269|PubMed:22936780}. CC -!- CATALYTIC ACTIVITY: 2-hydroxyethylphosphonate + O(2) = CC methylphosphonate + HCO(3)(-). {ECO:0000269|PubMed:22936780}. CC -!- COFACTOR: CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000269|PubMed:22936780}; CC -!- PATHWAY: Phosphorus metabolism; phosphonate biosynthesis. CC {ECO:0000269|PubMed:22936780}. CC -!- MISCELLANEOUS: The existence of the methylphosphonate biosynthesis CC pathway in marine microbes may explain the supersaturation of the CC aerobic ocean with methane. Methane is probably released following CC degradation of methylphosphonate produced by MpnS CC (PubMed:22936780). {ECO:0000305|PubMed:22936780}. CC -!- SIMILARITY: Belongs to the non-heme iron-dependent dioxygenase CC family. {ECO:0000305}. CC -!- SIMILARITY: Contains 2 HTH cro/C1-type DNA-binding domains. CC {ECO:0000255|PROSITE-ProRule:PRU00257}. CC -!- WEB RESOURCE: Name=Protein Spotlight; Note=An unusual chemistry - CC Issue 160 of May 2014; CC URL="http://web.expasy.org/spotlight/back_issues/160/"; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12053.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T2; -. DR STRING; 436308.Nmar_0155; -. DR EnsemblBacteria; ABX12053; ABX12053; Nmar_0155. DR KEGG; nmr:Nmar_0155; -. DR eggNOG; arCOG01865; Archaea. DR eggNOG; COG1396; LUCA. DR KO; K18049; -. DR BioCyc; MetaCyc:MONOMER-17793; -. DR BioCyc; NMAR436308:GI3J-157-MONOMER; -. DR UniPathway; UPA00960; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008198; F:ferrous iron binding; IDA:UniProtKB. DR GO; GO:0016702; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; IDA:UniProtKB. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0032923; P:organic phosphonate biosynthetic process; IDA:UniProtKB. DR GO; GO:0055114; P:oxidation-reduction process; IDA:UniProtKB. DR Gene3D; 1.10.260.40; -; 1. DR InterPro; IPR001387; Cro/C1-type_HTH. DR InterPro; IPR010982; Lambda_DNA-bd_dom. DR InterPro; IPR011051; RmlC_Cupin. DR Pfam; PF01381; HTH_3; 1. DR SMART; SM00530; HTH_XRE; 2. DR SUPFAM; SSF47413; SSF47413; 1. DR SUPFAM; SSF51182; SSF51182; 2. DR PROSITE; PS50943; HTH_CROC1; 1. PE 1: Evidence at protein level; KW Complete proteome; Dioxygenase; DNA-binding; Iron; Metal-binding; KW Oxidoreductase; Reference proteome; Repeat. FT CHAIN 1 457 Methylphosphonate synthase. FT /FTId=PRO_0000422033. FT DOMAIN 23 74 HTH cro/C1-type 1. {ECO:0000255|PROSITE- FT ProRule:PRU00257}. FT DOMAIN 247 301 HTH cro/C1-type 2. {ECO:0000255|PROSITE- FT ProRule:PRU00257}. FT DNA_BIND 32 50 H-T-H motif. {ECO:0000255|PROSITE- FT ProRule:PRU00257}. FT DNA_BIND 258 277 H-T-H motif. {ECO:0000255|PROSITE- FT ProRule:PRU00257}. FT METAL 148 148 Iron; via tele nitrogen. {ECO:0000250}. FT METAL 190 190 Iron; via tele nitrogen. {ECO:0000250}. SQ SEQUENCE 457 AA; 52054 MW; B302C62CA53AAA84 CRC64; MEKKIDFKPD SYLIRSGNNF LGILNDIKRR PEDAANELGV SIEEINSIIS GKQKISPSLI EKAVNIWPVN ERDFYIVSDD CSSGILIMTS QDSIKSSRIM ERAGKPYYEY RDTAMSKTAP FRPEWILELC KVENNDPENP KAQWNNGHFM HQFTYFIGEV NFYYKDPEGK KHVAIMNTGD SMYITPFTPH TFTTRDGASQ NGLILALTYG SKLTGDIQQE LSSLSLDCGS QYALDFTNHE NASLSLLEYY FELSNLTKEK FAKRTNFSME TLADFFTKKK LPTFDELKII AKALNVNSRD LMPNDLTESK VIVKTHDQCD HWKYPESGNY EFYELASTTA LPHSKAFEID VSSSEDLNLD LKVGLHQYVY NIGDSALTIN WNYENKTYQK SLNPGDSAYI KPFVPHNFRG NGKILILRIG GKISGDSQRE LSFVGRENTQ RAISETMQWF DPKGSNS // ID MTAP_NITMS Reviewed; 263 AA. AC A9A3N5; DT 25-JAN-2012, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 49. DE RecName: Full=S-methyl-5'-thioadenosine phosphorylase {ECO:0000255|HAMAP-Rule:MF_01963}; DE EC=2.4.2.28 {ECO:0000255|HAMAP-Rule:MF_01963}; DE AltName: Full=5'-methylthioadenosine phosphorylase {ECO:0000255|HAMAP-Rule:MF_01963}; DE Short=MTA phosphorylase {ECO:0000255|HAMAP-Rule:MF_01963}; DE Short=MTAP {ECO:0000255|HAMAP-Rule:MF_01963}; GN Name=mtnP {ECO:0000255|HAMAP-Rule:MF_01963}; GN OrderedLocusNames=Nmar_1401; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the reversible phosphorylation of S-methyl-5'- CC thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. CC Involved in the breakdown of MTA, a major by-product of polyamine CC biosynthesis. Responsible for the first step in the methionine CC salvage pathway after MTA has been generated from S- CC adenosylmethionine. Has broad substrate specificity with 6- CC aminopurine nucleosides as preferred substrates. CC {ECO:0000255|HAMAP-Rule:MF_01963}. CC -!- CATALYTIC ACTIVITY: S-methyl-5'-thioadenosine + phosphate = CC adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate. CC {ECO:0000255|HAMAP-Rule:MF_01963}. CC -!- PATHWAY: Amino-acid biosynthesis; L-methionine biosynthesis via CC salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from CC S-methyl-5'-thioadenosine (phosphorylase route): step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_01963}. CC -!- SUBUNIT: Homohexamer. Dimer of a homotrimer. {ECO:0000255|HAMAP- CC Rule:MF_01963}. CC -!- SIMILARITY: Belongs to the PNP/MTAP phosphorylase family. MTAP CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01963}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13297.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3N5; -. DR SMR; A9A3N5; 3-261. DR STRING; 436308.Nmar_1401; -. DR EnsemblBacteria; ABX13297; ABX13297; Nmar_1401. DR KEGG; nmr:Nmar_1401; -. DR eggNOG; arCOG01327; Archaea. DR eggNOG; COG0005; LUCA. DR HOGENOM; HOG000228986; -. DR KO; K00772; -. DR OMA; CVAHVSM; -. DR BioCyc; NMAR436308:GI3J-1436-MONOMER; -. DR UniPathway; UPA00904; UER00873. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0017061; F:S-methyl-5-thioadenosine phosphorylase activity; IEA:UniProtKB-EC. DR GO; GO:0019509; P:L-methionine biosynthetic process from methylthioadenosine; IEA:UniProtKB-UniPathway. DR GO; GO:0006166; P:purine ribonucleoside salvage; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1580; -; 1. DR HAMAP; MF_01963; MTAP; 1. DR InterPro; IPR010044; MTAP. DR InterPro; IPR000845; Nucleoside_phosphorylase_d. DR InterPro; IPR001369; PNP/MTAP. DR InterPro; IPR018099; Purine_phosphorylase-2_CS. DR PANTHER; PTHR11904; PTHR11904; 1. DR Pfam; PF01048; PNP_UDP_1; 1. DR SUPFAM; SSF53167; SSF53167; 1. DR TIGRFAMs; TIGR01694; MTAP; 1. DR PROSITE; PS01240; PNP_MTAP_2; 1. PE 3: Inferred from homology; KW Complete proteome; Glycosyltransferase; Purine salvage; KW Reference proteome; Transferase. FT CHAIN 1 263 S-methyl-5'-thioadenosine phosphorylase. FT /FTId=PRO_0000415105. FT REGION 55 56 Phosphate binding. {ECO:0000255|HAMAP- FT Rule:MF_01963}. FT REGION 88 89 Phosphate binding. {ECO:0000255|HAMAP- FT Rule:MF_01963}. FT REGION 210 212 Substrate binding. {ECO:0000255|HAMAP- FT Rule:MF_01963}. FT BINDING 13 13 Phosphate. {ECO:0000255|HAMAP- FT Rule:MF_01963}. FT BINDING 186 186 Substrate; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01963}. FT BINDING 187 187 Phosphate. {ECO:0000255|HAMAP- FT Rule:MF_01963}. FT SITE 168 168 Important for substrate specificity. FT {ECO:0000255|HAMAP-Rule:MF_01963}. FT SITE 221 221 Important for substrate specificity. FT {ECO:0000255|HAMAP-Rule:MF_01963}. SQ SEQUENCE 263 AA; 29043 MW; F42286B331B3BFF9 CRC64; MEKDVEIGIF GGTGIYDSGL LEDAKEVDID TPYGKPSDTI TVGTFKGRKI AFLPRHGKKH TIPPHMINFK ANIWAFKELG VTRIIAPSAV GSLKEELAPG HFVLPTQFLD FTKSRDGSFS EDGRVIHISV ADPFCPELQS SITEVTDSLD MNIHKDCTYV CIEGPRFSTK AESKFYRTTG ADIIGMTLVP ECQLAREAQI CYASISTVTD YDVWAEKPVT AKEVLETLSK NVEGTKKILT ELIEKIPKDR SCSCAKALEE AEF // ID NOP10_NITMS Reviewed; 51 AA. AC A9A115; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 47. DE RecName: Full=Ribosome biogenesis protein Nop10 {ECO:0000255|HAMAP-Rule:MF_00803}; GN Name=nop10 {ECO:0000255|HAMAP-Rule:MF_00803}; GN OrderedLocusNames=Nmar_0076; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in ribosome biogenesis; more specifically in CC 18S rRNA pseudouridylation and in cleavage of pre-rRNA. CC {ECO:0000255|HAMAP-Rule:MF_00803}. CC -!- SIMILARITY: Belongs to the NOP10 family. {ECO:0000255|HAMAP- CC Rule:MF_00803}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11976.1; -; Genomic_DNA. DR ProteinModelPortal; A9A115; -. DR SMR; A9A115; 3-45. DR STRING; 436308.Nmar_0076; -. DR EnsemblBacteria; ABX11976; ABX11976; Nmar_0076. DR KEGG; nmr:Nmar_0076; -. DR eggNOG; arCOG00906; Archaea. DR eggNOG; COG2260; LUCA. DR HOGENOM; HOG000224954; -. DR KO; K11130; -. DR OMA; EQTISAH; -. DR BioCyc; NMAR436308:GI3J-77-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030529; C:intracellular ribonucleoprotein complex; IEA:UniProtKB-KW. DR GO; GO:0030515; F:snoRNA binding; IEA:InterPro. DR GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00803; Nop10; 1. DR InterPro; IPR007264; H/ACA_rnp_Nop10. DR InterPro; IPR023532; Nop10_arc-typ. DR PANTHER; PTHR13305; PTHR13305; 1. DR Pfam; PF04135; Nop10p; 1. DR SUPFAM; SSF144210; SSF144210; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosome biogenesis; rRNA processing. FT CHAIN 1 51 Ribosome biogenesis protein Nop10. FT /FTId=PRO_1000148552. SQ SEQUENCE 51 AA; 6252 MW; 9D975F596F4FD0D7 CRC64; MRFQLRKCSK CFQYTLKEIC PKCKEQTISA HPAKFSPDDK YMRYRLAERY N // ID NNRD_NITMS Reviewed; 287 AA. AC A9A498; DT 21-MAR-2012, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 42. DE RecName: Full=ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000255|HAMAP-Rule:MF_01965}; DE EC=4.2.1.136 {ECO:0000255|HAMAP-Rule:MF_01965}; DE AltName: Full=ADP-dependent NAD(P)HX dehydratase {ECO:0000255|HAMAP-Rule:MF_01965}; GN Name=nnrD {ECO:0000255|HAMAP-Rule:MF_01965}; GN OrderedLocusNames=Nmar_0691; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the dehydration of the S-form of NAD(P)HX at CC the expense of ADP, which is converted to AMP. Together with CC NAD(P)HX epimerase, which catalyzes the epimerization of the S- CC and R-forms, the enzyme allows the repair of both epimers of CC NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic CC or heat-dependent hydration. {ECO:0000255|HAMAP-Rule:MF_01965}. CC -!- CATALYTIC ACTIVITY: ADP + (6S)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide adenine-dinucleotide = AMP + phosphate + CC NADH. {ECO:0000255|HAMAP-Rule:MF_01965}. CC -!- CATALYTIC ACTIVITY: ADP + (6S)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide adenine-dinucleotide phosphate = AMP + CC phosphate + NADPH. {ECO:0000255|HAMAP-Rule:MF_01965}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01965}; CC -!- SUBUNIT: Homotetramer. {ECO:0000255|HAMAP-Rule:MF_01965}. CC -!- SIMILARITY: Belongs to the NnrD/CARKD family. {ECO:0000255|HAMAP- CC Rule:MF_01965}. CC -!- SIMILARITY: Contains 1 YjeF C-terminal domain. {ECO:0000255|HAMAP- CC Rule:MF_01965}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12587.1; -; Genomic_DNA. DR ProteinModelPortal; A9A498; -. DR STRING; 436308.Nmar_0691; -. DR EnsemblBacteria; ABX12587; ABX12587; Nmar_0691. DR KEGG; nmr:Nmar_0691; -. DR eggNOG; arCOG00018; Archaea. DR eggNOG; COG0063; LUCA. DR HOGENOM; HOG000105660; -. DR KO; K17758; -. DR KO; K17759; -. DR OMA; FTPHQME; -. DR BioCyc; NMAR436308:GI3J-716-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0052855; F:ADP-dependent NAD(P)H-hydrate dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046496; P:nicotinamide nucleotide metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1190.20; -; 1. DR HAMAP; MF_01965; NADHX_dehydratase; 1. DR InterPro; IPR017953; Carbohydrate_kinase_pred_CS. DR InterPro; IPR000631; CARKD. DR InterPro; IPR029056; Ribokinase-like. DR Pfam; PF01256; Carb_kinase; 1. DR SUPFAM; SSF53613; SSF53613; 1. DR TIGRFAMs; TIGR00196; yjeF_cterm; 1. DR PROSITE; PS01050; YJEF_C_2; 1. DR PROSITE; PS51383; YJEF_C_3; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Lyase; NAD; NADP; Nucleotide-binding; KW Reference proteome. FT CHAIN 1 287 ADP-dependent (S)-NAD(P)H-hydrate FT dehydratase. FT /FTId=PRO_0000416155. FT DOMAIN 7 283 YjeF C-terminal. {ECO:0000255|HAMAP- FT Rule:MF_01965}. FT NP_BIND 196 200 ADP. {ECO:0000255|HAMAP-Rule:MF_01965}. FT NP_BIND 215 224 ADP. {ECO:0000255|HAMAP-Rule:MF_01965}. FT REGION 159 165 NAD(P)HX. {ECO:0000255|HAMAP- FT Rule:MF_01965}. FT BINDING 111 111 NAD(P)HX; via amide nitrogen. FT {ECO:0000255|HAMAP-Rule:MF_01965}. FT BINDING 225 225 NAD(P)HX. {ECO:0000255|HAMAP- FT Rule:MF_01965}. SQ SEQUENCE 287 AA; 30627 MW; 5A81A7370047C228 CRC64; MARKTLTTAL VKKFIPSRKS KSRKGENGIV LVVGGSYIYH GAPILSSIAA LRSGTDLVYT SVPKINVAST RSVSPNLIVI PLVDQKLTRG AVNKLLGALP RKLDSATIGM GLAIQEKNAL LHLVKSLLDR DVRLSLDASA LIPEVLPLLA NKNVVVTPHA GEFKRLFGQV PSNSKNERIK LVEEKAKEFG ITVLLKGSTD IISNGSTTYL YEKKIPAMTV GGTGDVLSGL VAGLLSKNRK PLESAAAAAF INGLAGKVVQ KKLGLHMTSM DLLPEISTVM KPFDKIM // ID NNRE_NITMS Reviewed; 215 AA. AC A9A432; DT 21-MAR-2012, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE RecName: Full=NAD(P)H-hydrate epimerase {ECO:0000255|HAMAP-Rule:MF_01966}; DE EC=5.1.99.6 {ECO:0000255|HAMAP-Rule:MF_01966}; DE AltName: Full=NAD(P)HX epimerase {ECO:0000255|HAMAP-Rule:MF_01966}; GN Name=nnrE {ECO:0000255|HAMAP-Rule:MF_01966}; GN OrderedLocusNames=Nmar_0320; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the epimerization of the S- and R-forms of CC NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic CC or heat-dependent hydration. This is a prerequisite for the S- CC specific NAD(P)H-hydrate dehydratase to allow the repair of both CC epimers of NAD(P)HX. {ECO:0000255|HAMAP-Rule:MF_01966}. CC -!- CATALYTIC ACTIVITY: (6R)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide-adenine dinucleotide = (6S)-6-beta-hydroxy- CC 1,4,5,6-tetrahydronicotinamide-adenine dinucleotide. CC {ECO:0000255|HAMAP-Rule:MF_01966}. CC -!- CATALYTIC ACTIVITY: (6R)-6-beta-hydroxy-1,4,5,6- CC tetrahydronicotinamide-adenine dinucleotide phosphate = (6S)-6- CC beta-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide CC phosphate. {ECO:0000255|HAMAP-Rule:MF_01966}. CC -!- COFACTOR: CC Name=K(+); Xref=ChEBI:CHEBI:29103; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01966}; CC Note=Binds 1 potassium ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_01966}; CC -!- SIMILARITY: Belongs to the NnrE/AIBP family. {ECO:0000255|HAMAP- CC Rule:MF_01966}. CC -!- SIMILARITY: Contains 1 YjeF N-terminal domain. {ECO:0000255|HAMAP- CC Rule:MF_01966}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12216.1; -; Genomic_DNA. DR ProteinModelPortal; A9A432; -. DR STRING; 436308.Nmar_0320; -. DR EnsemblBacteria; ABX12216; ABX12216; Nmar_0320. DR KEGG; nmr:Nmar_0320; -. DR eggNOG; ENOG4102U5H; Archaea. DR eggNOG; COG0062; LUCA. DR HOGENOM; HOG000109480; -. DR KO; K17759; -. DR OMA; ICAARHL; -. DR BioCyc; NMAR436308:GI3J-335-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0052856; F:NADHX epimerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.10260; -; 1. DR HAMAP; MF_01966; NADHX_epimerase; 1. DR InterPro; IPR004443; YjeF_N_dom. DR Pfam; PF03853; YjeF_N; 1. DR SUPFAM; SSF64153; SSF64153; 1. DR TIGRFAMs; TIGR00197; yjeF_nterm; 1. DR PROSITE; PS51385; YJEF_N; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Metal-binding; NAD; NADP; KW Nucleotide-binding; Potassium; Reference proteome. FT CHAIN 1 215 NAD(P)H-hydrate epimerase. FT /FTId=PRO_0000416382. FT DOMAIN 8 212 YjeF N-terminal. {ECO:0000255|HAMAP- FT Rule:MF_01966}. FT REGION 57 61 NAD(P)HX. {ECO:0000255|HAMAP- FT Rule:MF_01966}. FT REGION 128 134 NAD(P)HX. {ECO:0000255|HAMAP- FT Rule:MF_01966}. FT METAL 58 58 Potassium. {ECO:0000255|HAMAP- FT Rule:MF_01966}. FT METAL 124 124 Potassium. {ECO:0000255|HAMAP- FT Rule:MF_01966}. FT METAL 160 160 Potassium. {ECO:0000255|HAMAP- FT Rule:MF_01966}. FT BINDING 139 139 NAD(P)HX. {ECO:0000255|HAMAP- FT Rule:MF_01966}. FT BINDING 157 157 NAD(P)HX. {ECO:0000255|HAMAP- FT Rule:MF_01966}. SQ SEQUENCE 215 AA; 23584 MW; AEA2589344DEBF4F CRC64; MEITVDQMYN IENKGHDMGF LKKFMMENAG AAAVKRLVEK LGNVDSKNIL IFVGMGNNGG DGLVMARHLA GYNAKVTVML LGNPENIKTE ESNWNWSILE KMPSVKLMTG GTTNFDFKPD VIVDGILGTG ISGEIREPYA SAINYINQTD CYKFAVDVPS GLDPQTGETA NIFTKCDMTV TFHKMKQGIP KRKDLTGELF AEKIGIPPEA EEGIL // ID PANB_NITMS Reviewed; 279 AA. AC A9A2T9; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 61. DE RecName: Full=3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; DE EC=2.1.2.11 {ECO:0000255|HAMAP-Rule:MF_00156}; DE AltName: Full=Ketopantoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; DE Short=KPHMT {ECO:0000255|HAMAP-Rule:MF_00156}; GN Name=panB {ECO:0000255|HAMAP-Rule:MF_00156}; GN OrderedLocusNames=Nmar_1720; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the reversible reaction in which hydroxymethyl CC group from 5,10-methylenetetrahydrofolate is tranferred onto CC alpha-ketoisovalerate to form ketopantoate. {ECO:0000255|HAMAP- CC Rule:MF_00156}. CC -!- CATALYTIC ACTIVITY: 5,10-methylenetetrahydrofolate + 3-methyl-2- CC oxobutanoate + H(2)O = tetrahydrofolate + 2-dehydropantoate. CC {ECO:0000255|HAMAP-Rule:MF_00156}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00156}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00156}; CC -!- PATHWAY: Cofactor biosynthesis; (R)-pantothenate biosynthesis; CC (R)-pantoate from 3-methyl-2-oxobutanoate: step 1/2. CC {ECO:0000255|HAMAP-Rule:MF_00156}. CC -!- SUBUNIT: Homodecamer; pentamer of dimers. {ECO:0000255|HAMAP- CC Rule:MF_00156}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00156}. CC -!- SIMILARITY: Belongs to the PanB family. {ECO:0000255|HAMAP- CC Rule:MF_00156}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13616.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2T9; -. DR STRING; 436308.Nmar_1720; -. DR EnsemblBacteria; ABX13616; ABX13616; Nmar_1720. DR KEGG; nmr:Nmar_1720; -. DR eggNOG; arCOG00584; Archaea. DR eggNOG; COG0413; LUCA. DR HOGENOM; HOG000078427; -. DR KO; K00606; -. DR OMA; RPQGKNI; -. DR BioCyc; NMAR436308:GI3J-1765-MONOMER; -. DR UniPathway; UPA00028; UER00003. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003864; F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0015940; P:pantothenate biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.60; -; 1. DR HAMAP; MF_00156; PanB; 1. DR InterPro; IPR003700; Pantoate_hydroxy_MeTrfase. DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. DR PANTHER; PTHR20881; PTHR20881; 1. DR Pfam; PF02548; Pantoate_transf; 1. DR PIRSF; PIRSF000388; Pantoate_hydroxy_MeTrfase; 1. DR SUPFAM; SSF51621; SSF51621; 1. DR TIGRFAMs; TIGR00222; panB; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Magnesium; Metal-binding; KW Pantothenate biosynthesis; Reference proteome; Transferase. FT CHAIN 1 279 3-methyl-2-oxobutanoate FT hydroxymethyltransferase. FT /FTId=PRO_1000123387. FT REGION 44 45 Alpha-ketoisovalerate binding. FT {ECO:0000255|HAMAP-Rule:MF_00156}. FT ACT_SITE 181 181 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT METAL 44 44 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT METAL 83 83 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT METAL 114 114 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_00156}. FT BINDING 83 83 Alpha-ketoisovalerate. FT {ECO:0000255|HAMAP-Rule:MF_00156}. FT BINDING 112 112 Alpha-ketoisovalerate. FT {ECO:0000255|HAMAP-Rule:MF_00156}. SQ SEQUENCE 279 AA; 30315 MW; 36BC2D175EBB8F79 CRC64; MHKSVQDIVN MKKGKKKVSV ITGYDYTLAS LCDKAGIDVL LVGDSAGMVM LGYENTIPVT MDQMCMFTEA VSRARNNALL VADLPFMSYQ ASIEDAINNS GKLIKAGADA VKLEGGSIMA ETISAIVDVG IPVMGHIGLQ PQTTMLSQGY KVQGRTKDSA MQLIQDAKEL EEAGVFSIAL EMVSHEVAQI ISETVSAPTI GIGSGVNCDG QVLVVQDLLG MYDKIKPKFA KRYMNLSEDI VKSLEDYKND VESNTFPAEE NWFSMDPEEL KKLREQIGS // ID PELO_NITMS Reviewed; 349 AA. AC A9A148; DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE RecName: Full=Protein pelota homolog {ECO:0000255|HAMAP-Rule:MF_01853}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01853}; GN Name=pelA {ECO:0000255|HAMAP-Rule:MF_01853}; GN OrderedLocusNames=Nmar_0109; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: May function in recognizing stalled ribosomes, interact CC with stem-loop structures in stalled mRNA molecules, and effect CC endonucleolytic cleavage of the mRNA. May play a role in the CC release non-functional ribosomes and degradation of damaged mRNAs. CC Has endoribonuclease activity. {ECO:0000255|HAMAP-Rule:MF_01853}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01853}; CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_01853}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01853}. CC -!- DOMAIN: The N-terminal domain has the RNA-binding Sm fold. It CC harbors the endoribonuclease activity. {ECO:0000255|HAMAP- CC Rule:MF_01853}. CC -!- SIMILARITY: Belongs to the eukaryotic release factor 1 family. CC Pelota subfamily. {ECO:0000255|HAMAP-Rule:MF_01853}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12009.1; -; Genomic_DNA. DR ProteinModelPortal; A9A148; -. DR STRING; 436308.Nmar_0109; -. DR EnsemblBacteria; ABX12009; ABX12009; Nmar_0109. DR KEGG; nmr:Nmar_0109; -. DR eggNOG; arCOG01741; Archaea. DR eggNOG; COG1537; LUCA. DR HOGENOM; HOG000115493; -. DR KO; K06965; -. DR OMA; KGSHHTI; -. DR BioCyc; NMAR436308:GI3J-112-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070966; P:nuclear-transcribed mRNA catabolic process, no-go decay; IEA:InterPro. DR GO; GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; IEA:InterPro. DR GO; GO:0071025; P:RNA surveillance; IEA:InterPro. DR HAMAP; MF_01853; PelO; 1. DR InterPro; IPR005140; eRF1_1_Pelota. DR InterPro; IPR005142; eRF1_3. DR InterPro; IPR029064; L30e-like. DR InterPro; IPR023521; Pelota_arc. DR InterPro; IPR004405; Transl-rel_pelota. DR PANTHER; PTHR10853; PTHR10853; 1. DR Pfam; PF03463; eRF1_1; 1. DR Pfam; PF03465; eRF1_3; 1. DR SMART; SM01194; eRF1_1; 1. DR SUPFAM; SSF55315; SSF55315; 1. DR TIGRFAMs; TIGR00111; pelota; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Metal-binding; KW Nuclease; Reference proteome. FT CHAIN 1 349 Protein pelota homolog. FT /FTId=PRO_0000361811. SQ SEQUENCE 349 AA; 39131 MW; 55C803C31E2DA058 CRC64; MITKNIDENL ISVIPEDSDD LLNLRRIIKE NDKIIGDTTR VLKQDKDYSR PDKGERIKVR IALTVEKISL DDVLDRLRIR GTISESSNES VPHGTHHSFI LKINDGITIS KKKWLPFEKN LLESSNNQVG FVLVAIDTGD SGIARLRGTH LEFMPNIYSG SGGKRYKTNF NIEKFFEQVQ QAISTILKEG DSIVIFGPGE TKKRFANFIQ KSQNLQKFKV QVVEGIDSGG EDGIYTFTKS NTMKEIMSDS KLAKVSSIID EVMLLANKKS TKFTMGFDET FNANQMGAVE SMVFSDKAIQ DDEQKMIDFL NDMENKGVKM YSVDSSTDIG LRVTGLGGIV SLLRYSIES // ID PCNA_NITMS Reviewed; 248 AA. AC A9A2X4; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 53. DE RecName: Full=DNA polymerase sliding clamp {ECO:0000255|HAMAP-Rule:MF_00317}; DE AltName: Full=Proliferating cell nuclear antigen homolog {ECO:0000255|HAMAP-Rule:MF_00317}; DE Short=PCNA {ECO:0000255|HAMAP-Rule:MF_00317}; GN Name=pcn {ECO:0000255|HAMAP-Rule:MF_00317}; GN OrderedLocusNames=Nmar_1755; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Sliding clamp subunit that acts as a moving platform for CC DNA processing. Responsible for tethering the catalytic subunit of CC DNA polymerase and other proteins to DNA during high-speed CC replication. {ECO:0000255|HAMAP-Rule:MF_00317}. CC -!- SUBUNIT: Homotrimer. The subunits circularize to form a toroid; CC DNA passes through its center. Replication factor C (RFC) is CC required to load the toroid on the DNA. {ECO:0000255|HAMAP- CC Rule:MF_00317}. CC -!- SIMILARITY: Belongs to the PCNA family. {ECO:0000255|HAMAP- CC Rule:MF_00317}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13651.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2X4; -. DR STRING; 436308.Nmar_1755; -. DR EnsemblBacteria; ABX13651; ABX13651; Nmar_1755. DR KEGG; nmr:Nmar_1755; -. DR eggNOG; arCOG00488; Archaea. DR eggNOG; COG0592; LUCA. DR HOGENOM; HOG000115474; -. DR KO; K04802; -. DR OMA; SDGFDKY; -. DR BioCyc; NMAR436308:GI3J-1802-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030337; F:DNA polymerase processivity factor activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR GO; GO:0006275; P:regulation of DNA replication; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00317; DNApol_clamp_arch; 1. DR InterPro; IPR000730; Pr_cel_nuc_antig. DR InterPro; IPR022649; Pr_cel_nuc_antig_C. DR InterPro; IPR022648; Pr_cel_nuc_antig_N. DR PANTHER; PTHR11352; PTHR11352; 1. DR Pfam; PF02747; PCNA_C; 1. DR Pfam; PF00705; PCNA_N; 1. DR PRINTS; PR00339; PCNACYCLIN. DR TIGRFAMs; TIGR00590; pcna; 1. PE 3: Inferred from homology; KW Complete proteome; DNA replication; DNA-binding; Reference proteome. FT CHAIN 1 248 DNA polymerase sliding clamp. FT /FTId=PRO_1000115816. SQ SEQUENCE 248 AA; 27175 MW; 5822C2A226B2A5D6 CRC64; MTFGAKTSGS DDLKAIISAI STLVEEATFV ATAEGISFRG MDPSHVALID ISWPNSAFEK YECDSDIKFG VRIDEFSKLI KRADKKDSIE ISISEQNMLL VTVGKNKKYK MRLIESSATD TPLPKIPYDS KIILSSSKFD KILGDVQVVS DYLTIHTSDS KGDFSGKGDS GEVVIDLDKD DEGIEEISSK EDSVGTYSLE YLNPVVKAVG TTAGFITCEF SSAKPLRIEF KVANIGRIHF YLAPRVES // ID PDAD_NITMS Reviewed; 183 AA. AC A9A5S1; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 48. DE RecName: Full=Pyruvoyl-dependent arginine decarboxylase {ECO:0000255|HAMAP-Rule:MF_01404}; DE Short=PvlArgDC {ECO:0000255|HAMAP-Rule:MF_01404}; DE EC=4.1.1.19 {ECO:0000255|HAMAP-Rule:MF_01404}; DE Contains: DE RecName: Full=Pyruvoyl-dependent arginine decarboxylase subunit beta {ECO:0000255|HAMAP-Rule:MF_01404}; DE Contains: DE RecName: Full=Pyruvoyl-dependent arginine decarboxylase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01404}; GN Name=pdaD {ECO:0000255|HAMAP-Rule:MF_01404}; GN OrderedLocusNames=Nmar_1180; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: L-arginine = agmatine + CO(2). CC {ECO:0000255|HAMAP-Rule:MF_01404}. CC -!- COFACTOR: CC Name=pyruvate; Xref=ChEBI:CHEBI:15361; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01404}; CC Note=Binds 1 pyruvoyl group covalently per subunit. CC {ECO:0000255|HAMAP-Rule:MF_01404}; CC -!- SIMILARITY: Belongs to the PdaD family. {ECO:0000255|HAMAP- CC Rule:MF_01404}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13076.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5S1; -. DR STRING; 436308.Nmar_1180; -. DR EnsemblBacteria; ABX13076; ABX13076; Nmar_1180. DR KEGG; nmr:Nmar_1180; -. DR eggNOG; arCOG04490; Archaea. DR eggNOG; COG1945; LUCA. DR HOGENOM; HOG000012204; -. DR KO; K02626; -. DR OMA; SEHHSFG; -. DR BioCyc; NMAR436308:GI3J-1212-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008792; F:arginine decarboxylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006527; P:arginine catabolic process; IEA:InterPro. DR Gene3D; 3.50.20.10; -; 1. DR HAMAP; MF_01404; PvlArgDC; 1. DR InterPro; IPR016104; Pyr-dep_his/arg-deCO2ase. DR InterPro; IPR016105; Pyr-dep_his/arg-deCO2ase_sand. DR InterPro; IPR002724; Pyruvoyl-dep_arg_deCO2ase. DR Pfam; PF01862; PvlArgDC; 1. DR PIRSF; PIRSF005216; Pyruvoyl-dep_arg_deCO2ase; 1. DR ProDom; PD010449; Pyruvoyl-dep_arg_deCO2ase; 1. DR SUPFAM; SSF56271; SSF56271; 1. DR TIGRFAMs; TIGR00286; TIGR00286; 1. PE 3: Inferred from homology; KW Complete proteome; Decarboxylase; Lyase; Pyruvate; Reference proteome. FT CHAIN 1 43 Pyruvoyl-dependent arginine decarboxylase FT subunit beta. {ECO:0000255|HAMAP- FT Rule:MF_01404}. FT /FTId=PRO_1000145472. FT CHAIN 44 183 Pyruvoyl-dependent arginine decarboxylase FT subunit alpha. {ECO:0000255|HAMAP- FT Rule:MF_01404}. FT /FTId=PRO_1000145473. FT SITE 43 44 Cleavage (non-hydrolytic). FT {ECO:0000255|HAMAP-Rule:MF_01404}. FT MOD_RES 44 44 Pyruvic acid (Ser). {ECO:0000255|HAMAP- FT Rule:MF_01404}. SQ SEQUENCE 183 AA; 20507 MW; 0E5D71CB24A68451 CRC64; MLDLVAKKLF LTRGKGIHED RLTSFEYALR DAGIAGTNLV LISSIFPPKA KLISRKEGLQ QIKPGQILFT IYSKNQTNEP HRMCSASVGI AQPKDKDRYG YLSEYEAFGQ TETQAGDYAE DIAAQMLASS LGIPFDVDKN WDEKRQQWKI SGEIYKTQNI TQQTRGDKDG KWTTVFAAAV LLV // ID PFDA_NITMS Reviewed; 145 AA. AC A9A592; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=Prefoldin subunit alpha {ECO:0000255|HAMAP-Rule:MF_00308}; DE AltName: Full=GimC subunit alpha {ECO:0000255|HAMAP-Rule:MF_00308}; GN Name=pfdA {ECO:0000255|HAMAP-Rule:MF_00308}; GN OrderedLocusNames=Nmar_0395; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Molecular chaperone capable of stabilizing a range of CC proteins. Seems to fulfill an ATP-independent, HSP70-like function CC in archaeal de novo protein folding. {ECO:0000255|HAMAP- CC Rule:MF_00308}. CC -!- SUBUNIT: Heterohexamer of two alpha and four beta subunits. CC {ECO:0000255|HAMAP-Rule:MF_00308}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00308}. CC -!- SIMILARITY: Belongs to the prefoldin alpha subunit family. CC {ECO:0000255|HAMAP-Rule:MF_00308}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12291.1; -; Genomic_DNA. DR ProteinModelPortal; A9A592; -. DR STRING; 436308.Nmar_0395; -. DR EnsemblBacteria; ABX12291; ABX12291; Nmar_0395. DR KEGG; nmr:Nmar_0395; -. DR eggNOG; arCOG01341; Archaea. DR eggNOG; COG1730; LUCA. DR HOGENOM; HOG000115515; -. DR KO; K04797; -. DR OMA; QRINEMV; -. DR BioCyc; NMAR436308:GI3J-412-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016272; C:prefoldin complex; IEA:UniProtKB-HAMAP. DR GO; GO:0006457; P:protein folding; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.370; -; 1. DR HAMAP; MF_00308; PfdA; 1. DR InterPro; IPR011599; PFD_alpha_archaea. DR InterPro; IPR009053; Prefoldin. DR InterPro; IPR004127; Prefoldin_subunit_alpha. DR Pfam; PF02996; Prefoldin; 1. DR SUPFAM; SSF46579; SSF46579; 1. DR TIGRFAMs; TIGR00293; TIGR00293; 1. PE 3: Inferred from homology; KW Chaperone; Complete proteome; Cytoplasm; Reference proteome. FT CHAIN 1 145 Prefoldin subunit alpha. FT /FTId=PRO_1000115628. SQ SEQUENCE 145 AA; 15963 MW; 440DE0C2F3ED58E7 CRC64; MSQEQAEQLM QQMQMLETYF ADLSQRENTF LGVFREATAA IESIKSLSKN PESDTLVPIG LGTYVPTKIS SDSKIILNIG AGVAVEKDFP SAINYLEERI KEIEIAIQDT AAKKQDAAQR LEQGKAQVNQ LMQAMQQSGQ PPKSG // ID PDXT_NITMS Reviewed; 205 AA. AC A9A4S0; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 49. DE RecName: Full=Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000255|HAMAP-Rule:MF_01615}; DE EC=4.3.3.6 {ECO:0000255|HAMAP-Rule:MF_01615}; DE AltName: Full=Pdx2 {ECO:0000255|HAMAP-Rule:MF_01615}; DE AltName: Full=Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000255|HAMAP-Rule:MF_01615}; DE EC=3.5.1.2 {ECO:0000255|HAMAP-Rule:MF_01615}; GN Name=pdxT {ECO:0000255|HAMAP-Rule:MF_01615}; GN OrderedLocusNames=Nmar_1478; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the hydrolysis of glutamine to glutamate and CC ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The CC resulting ammonia molecule is channeled to the active site of CC PdxS. {ECO:0000255|HAMAP-Rule:MF_01615}. CC -!- CATALYTIC ACTIVITY: D-ribose 5-phosphate + D-glyceraldehyde 3- CC phosphate + L-glutamine = pyridoxal 5'-phosphate + L-glutamate + 3 CC H(2)O + phosphate. {ECO:0000255|HAMAP-Rule:MF_01615}. CC -!- CATALYTIC ACTIVITY: L-glutamine + H(2)O = L-glutamate + NH(3). CC {ECO:0000255|HAMAP-Rule:MF_01615}. CC -!- PATHWAY: Cofactor biosynthesis; pyridoxal 5'-phosphate CC biosynthesis. {ECO:0000255|HAMAP-Rule:MF_01615}. CC -!- SUBUNIT: In the presence of PdxS, forms a dodecamer of CC heterodimers. Only shows activity in the heterodimer. CC {ECO:0000255|HAMAP-Rule:MF_01615}. CC -!- SIMILARITY: Belongs to the glutaminase PdxT/SNO family. CC {ECO:0000255|HAMAP-Rule:MF_01615}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13374.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4S0; -. DR STRING; 436308.Nmar_1478; -. DR EnsemblBacteria; ABX13374; ABX13374; Nmar_1478. DR KEGG; nmr:Nmar_1478; -. DR eggNOG; arCOG00034; Archaea. DR eggNOG; COG0311; LUCA. DR HOGENOM; HOG000039949; -. DR KO; K08681; -. DR OMA; VYGTCAG; -. DR BioCyc; NMAR436308:GI3J-1515-MONOMER; -. DR UniPathway; UPA00245; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004359; F:glutaminase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0036381; F:pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006543; P:glutamine catabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0042823; P:pyridoxal phosphate biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0042819; P:vitamin B6 biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_01615; PdxT; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR002161; PdxT/SNO. DR InterPro; IPR021196; PdxT/SNO_CS. DR Pfam; PF01174; SNO; 1. DR PIRSF; PIRSF005639; Glut_amidoT_SNO; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR03800; PLP_synth_Pdx2; 1. DR PROSITE; PS01236; PDXT_SNO_1; 1. DR PROSITE; PS51130; PDXT_SNO_2; 1. PE 3: Inferred from homology; KW Complete proteome; Glutamine amidotransferase; Hydrolase; Lyase; KW Pyridoxal phosphate; Reference proteome. FT CHAIN 1 205 Pyridoxal 5'-phosphate synthase subunit FT PdxT. FT /FTId=PRO_1000185897. FT REGION 54 56 L-glutamine binding. {ECO:0000255|HAMAP- FT Rule:MF_01615}. FT REGION 147 148 L-glutamine binding. {ECO:0000255|HAMAP- FT Rule:MF_01615}. FT ACT_SITE 86 86 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_01615}. FT ACT_SITE 183 183 Charge relay system. {ECO:0000255|HAMAP- FT Rule:MF_01615}. FT ACT_SITE 185 185 Charge relay system. {ECO:0000255|HAMAP- FT Rule:MF_01615}. FT BINDING 118 118 L-glutamine. {ECO:0000255|HAMAP- FT Rule:MF_01615}. SQ SEQUENCE 205 AA; 21915 MW; 085DF362E940CA20 CRC64; MSAKIGILAI QGDVAENVSS LVASIADLNQ DATVHVVKTP EEISAMDGLV IPGGESTTIG QLSLVNGSQK VIKQKVESGM PVLGICAGMV LLASNATDRV VGKTEQPLFD FLDIELERNS FGRQRESFEA NVSMDSIGIS NYNGVFIRAP AISSTSDDIE VLAKLNEKIV AIKKGNIIGT SFHPELTDDL AVHKYFVNLV KETKQ // ID PGP_NITMS Reviewed; 231 AA. AC A9A492; DT 22-SEP-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 55. DE RecName: Full=Phosphoglycolate phosphatase {ECO:0000255|HAMAP-Rule:MF_01419}; DE Short=PGP {ECO:0000255|HAMAP-Rule:MF_01419}; DE Short=PGPase {ECO:0000255|HAMAP-Rule:MF_01419}; DE EC=3.1.3.18 {ECO:0000255|HAMAP-Rule:MF_01419}; GN OrderedLocusNames=Nmar_0685; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the dephosphorylation of 2-phosphoglycolate. CC {ECO:0000255|HAMAP-Rule:MF_01419}. CC -!- CATALYTIC ACTIVITY: 2-phosphoglycolate + H(2)O = glycolate + CC phosphate. {ECO:0000255|HAMAP-Rule:MF_01419}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01419}; CC -!- SIMILARITY: Belongs to the archaeal SPP-like hydrolase family. CC {ECO:0000255|HAMAP-Rule:MF_01419}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12581.1; -; Genomic_DNA. DR ProteinModelPortal; A9A492; -. DR STRING; 436308.Nmar_0685; -. DR EnsemblBacteria; ABX12581; ABX12581; Nmar_0685. DR KEGG; nmr:Nmar_0685; -. DR eggNOG; arCOG01213; Archaea. DR eggNOG; COG0561; LUCA. DR HOGENOM; HOG000184780; -. DR KO; K07024; -. DR OMA; KWRETEI; -. DR BioCyc; NMAR436308:GI3J-710-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0008967; F:phosphoglycolate phosphatase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1000; -; 2. DR HAMAP; MF_01419; GPH_hydrolase_arch; 1. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006379; HAD-SF_hydro_IIB. DR InterPro; IPR006382; PGPase. DR Pfam; PF08282; Hydrolase_3; 2. DR SUPFAM; SSF56784; SSF56784; 1. DR TIGRFAMs; TIGR01484; HAD-SF-IIB; 1. PE 3: Inferred from homology; KW Carbohydrate metabolism; Complete proteome; Hydrolase; Magnesium; KW Metal-binding; Reference proteome. FT CHAIN 1 231 Phosphoglycolate phosphatase. FT /FTId=PRO_1000215252. FT ACT_SITE 9 9 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_01419}. FT METAL 9 9 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01419}. FT METAL 11 11 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01419}. FT METAL 177 177 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01419}. FT METAL 181 181 Magnesium. {ECO:0000255|HAMAP- FT Rule:MF_01419}. FT BINDING 154 154 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01419}. SQ SEQUENCE 231 AA; 24991 MW; 32B41688547C40B5 CRC64; MKKRTFAVDI DGTITENGGG RIHLDALESL RRLVNMGHDV IFVTGRSSVE GFLLSVFGGT TKVSVGENGG CITLDSNDHI LLGNLEECKN ALNILKNNME NVEEKYVFPR MTEVVLQRTF DLDQARKILS ENNIDVVLSD SQYAYHINSP GIDKGTGFTE IMKKFSISRD DVIAIGDSAT DVPLFKVAKT SVALGNASDD VKSEATMTVS AHAGDGVLEA LDKLAPILSE I // ID PRIS_NITMS Reviewed; 373 AA. AC A9A557; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=DNA primase small subunit PriS {ECO:0000255|HAMAP-Rule:MF_00700}; DE EC=2.7.7.- {ECO:0000255|HAMAP-Rule:MF_00700}; GN Name=priS {ECO:0000255|HAMAP-Rule:MF_00700}; Synonyms=priA; GN OrderedLocusNames=Nmar_0066; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalytic subunit of DNA primase, an RNA polymerase that CC catalyzes the synthesis of short RNA molecules used as primers for CC DNA polymerase during DNA replication. The small subunit contains CC the primase catalytic core and has DNA synthesis activity on its CC own. Binding to the large subunit stabilizes and modulates the CC activity, increasing the rate of DNA synthesis while decreasing CC the length of the DNA fragments, and conferring RNA synthesis CC capability. The DNA polymerase activity may enable DNA primase to CC also catalyze primer extension after primer synthesis. May also CC play a role in DNA repair. {ECO:0000255|HAMAP-Rule:MF_00700}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00700}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00700}; CC -!- SUBUNIT: Heterodimer of a small subunit (PriS) and a large subunit CC (PriL). {ECO:0000255|HAMAP-Rule:MF_00700}. CC -!- SIMILARITY: Belongs to the eukaryotic-type primase small subunit CC family. {ECO:0000255|HAMAP-Rule:MF_00700}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11966.1; -; Genomic_DNA. DR ProteinModelPortal; A9A557; -. DR STRING; 436308.Nmar_0066; -. DR EnsemblBacteria; ABX11966; ABX11966; Nmar_0066. DR KEGG; nmr:Nmar_0066; -. DR eggNOG; arCOG04110; Archaea. DR eggNOG; COG1467; LUCA. DR HOGENOM; HOG000110665; -. DR KO; K02683; -. DR OMA; HIHITSE; -. DR BioCyc; NMAR436308:GI3J-66-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:1990077; C:primosome complex; IEA:UniProtKB-KW. DR GO; GO:0003896; F:DNA primase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR HAMAP; MF_00700; DNA_primase_sml_arc; 1. DR InterPro; IPR002755; DNA_primase_S. DR InterPro; IPR014052; DNA_primase_ssu_euk/arc. DR InterPro; IPR023639; DNA_primase_ssu_PriS. DR PANTHER; PTHR10536; PTHR10536; 2. DR Pfam; PF01896; DNA_primase_S; 1. PE 3: Inferred from homology; KW Complete proteome; DNA replication; DNA-directed RNA polymerase; KW Magnesium; Manganese; Metal-binding; Nucleotidyltransferase; KW Primosome; Reference proteome; Transcription; Transferase. FT CHAIN 1 373 DNA primase small subunit PriS. FT /FTId=PRO_1000192553. FT ACT_SITE 95 95 {ECO:0000255|HAMAP-Rule:MF_00700}. FT ACT_SITE 97 97 {ECO:0000255|HAMAP-Rule:MF_00700}. FT ACT_SITE 281 281 {ECO:0000255|HAMAP-Rule:MF_00700}. SQ SEQUENCE 373 AA; 42863 MW; 55522054A50DB8DB CRC64; MNETDIKFLE SAFKKYYFEQ FELIRVPERT SEREFGYQKF NSGMTRHISV KDDKELHLLL MQNVPSDVYC SNAYYSFPNL PMNEKDWKEA DLIFDIDAKD LNLSCRGNHT LSICNECHEI SNNSEKCSKC NSTKLEKKSL PCKNCIDSSK IEVKKLSEIL TNDLSVNKDD IQVYFSGNEG FHIYVYNSQF QQNGSRERSE LVDYIMFNGA IPEKFGMKKF KPNRNSFPDF DEAGWKGRFS KYVYGSKSKR SKIVSELLSN GYSSFQKTLD DVSENIGTKI DPNVTMDIHR IFRLPGSINS KSGLTKIHCK DLVKFDAYVD SSFLSDDSVE VLANCPIEFK LKNKKFGPYH NEKVSVPTFA AVYMVCKKLA TIA // ID PSB1_NITMS Reviewed; 198 AA. AC A9A4A1; DT 10-AUG-2010, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=Proteasome subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_02113}; DE EC=3.4.25.1 {ECO:0000255|HAMAP-Rule:MF_02113}; DE AltName: Full=20S proteasome beta subunit 1 {ECO:0000255|HAMAP-Rule:MF_02113}; DE AltName: Full=Proteasome core protein PsmB 1 {ECO:0000255|HAMAP-Rule:MF_02113}; DE Flags: Precursor; GN Name=psmB1 {ECO:0000255|HAMAP-Rule:MF_02113}; GN OrderedLocusNames=Nmar_0694; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Component of the proteasome core, a large protease CC complex with broad specificity involved in protein degradation. CC {ECO:0000255|HAMAP-Rule:MF_02113}. CC -!- CATALYTIC ACTIVITY: Cleavage of peptide bonds with very broad CC specificity. {ECO:0000255|HAMAP-Rule:MF_02113}. CC -!- ENZYME REGULATION: The formation of the proteasomal ATPase PAN-20S CC proteasome complex, via the docking of the C-termini of PAN into CC the intersubunit pockets in the alpha-rings, triggers opening of CC the gate for substrate entry. Interconversion between the open- CC gate and close-gate conformations leads to a dynamic regulation of CC the 20S proteasome proteolysis activity. {ECO:0000255|HAMAP- CC Rule:MF_02113}. CC -!- SUBUNIT: The 20S proteasome core is composed of 14 alpha and 14 CC beta subunits that assemble into four stacked heptameric rings, CC resulting in a barrel-shaped structure. The two inner rings, each CC composed of seven catalytic beta subunits, are sandwiched by two CC outer rings, each composed of seven alpha subunits. The catalytic CC chamber with the active sites is on the inside of the barrel. Has CC a gated structure, the ends of the cylinder being occluded by the CC N-termini of the alpha-subunits. Is capped at one or both ends by CC the proteasome regulatory ATPase, PAN. {ECO:0000255|HAMAP- CC Rule:MF_02113}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02113}. CC -!- SIMILARITY: Belongs to the peptidase T1B family. CC {ECO:0000255|HAMAP-Rule:MF_02113}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12590.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4A1; -. DR STRING; 436308.Nmar_0694; -. DR MEROPS; T01.002; -. DR EnsemblBacteria; ABX12590; ABX12590; Nmar_0694. DR KEGG; nmr:Nmar_0694; -. DR eggNOG; arCOG00970; Archaea. DR eggNOG; COG0638; LUCA. DR HOGENOM; HOG000091083; -. DR KO; K03433; -. DR OMA; YSYKLAP; -. DR BioCyc; NMAR436308:GI3J-719-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0019774; C:proteasome core complex, beta-subunit complex; IEA:UniProtKB-HAMAP. DR GO; GO:0004298; F:threonine-type endopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0010498; P:proteasomal protein catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.60.20.10; -; 1. DR HAMAP; MF_02113_A; Proteasome_B_A; 1. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR019983; Pept_T1A_Psome_bsu_arc. DR InterPro; IPR000243; Pept_T1A_subB. DR InterPro; IPR016050; Proteasome_bsu_CS. DR InterPro; IPR001353; Proteasome_sua/b. DR InterPro; IPR023333; Proteasome_suB-type. DR Pfam; PF00227; Proteasome; 1. DR PRINTS; PR00141; PROTEASOME. DR SUPFAM; SSF56235; SSF56235; 1. DR PROSITE; PS00854; PROTEASOME_BETA_1; 1. DR PROSITE; PS51476; PROTEASOME_BETA_2; 1. PE 3: Inferred from homology; KW Autocatalytic cleavage; Complete proteome; Cytoplasm; Hydrolase; KW Protease; Proteasome; Reference proteome; Threonine protease; Zymogen. FT PROPEP 1 8 Removed in mature form; by autocatalysis. FT {ECO:0000255|HAMAP-Rule:MF_02113}. FT /FTId=PRO_0000397388. FT CHAIN 9 198 Proteasome subunit beta 1. FT /FTId=PRO_0000397389. FT ACT_SITE 9 9 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_02113}. SQ SEQUENCE 198 AA; 21330 MW; 26D6CEB86D6B4D32 CRC64; MSMYMPGATA VGITFDGGVV FASEKRIAFG NFLVSKTTKK TFPITPKVGA TCAGLVADMQ ILSLQIAALA KIRKMELKRD VPPNTVAKMM SNMMYERRYF PLLTQVIVGG VVDKPIMYTL DPLGSVLPDE YAAVGTGAEM ALGVLDPQFK PNMTKDEAID LAKRAVRAAS LRDSASGDGV DVLVITKDGT EEFTEEIK // ID PSB2_NITMS Reviewed; 210 AA. AC A9A2U7; DT 10-AUG-2010, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=Proteasome subunit beta 2 {ECO:0000255|HAMAP-Rule:MF_02113}; DE EC=3.4.25.1 {ECO:0000255|HAMAP-Rule:MF_02113}; DE AltName: Full=20S proteasome beta subunit 2 {ECO:0000255|HAMAP-Rule:MF_02113}; DE AltName: Full=Proteasome core protein PsmB 2 {ECO:0000255|HAMAP-Rule:MF_02113}; DE Flags: Precursor; GN Name=psmB2 {ECO:0000255|HAMAP-Rule:MF_02113}; GN OrderedLocusNames=Nmar_1728; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Component of the proteasome core, a large protease CC complex with broad specificity involved in protein degradation. CC {ECO:0000255|HAMAP-Rule:MF_02113}. CC -!- CATALYTIC ACTIVITY: Cleavage of peptide bonds with very broad CC specificity. {ECO:0000255|HAMAP-Rule:MF_02113}. CC -!- ENZYME REGULATION: The formation of the proteasomal ATPase PAN-20S CC proteasome complex, via the docking of the C-termini of PAN into CC the intersubunit pockets in the alpha-rings, triggers opening of CC the gate for substrate entry. Interconversion between the open- CC gate and close-gate conformations leads to a dynamic regulation of CC the 20S proteasome proteolysis activity. {ECO:0000255|HAMAP- CC Rule:MF_02113}. CC -!- SUBUNIT: The 20S proteasome core is composed of 14 alpha and 14 CC beta subunits that assemble into four stacked heptameric rings, CC resulting in a barrel-shaped structure. The two inner rings, each CC composed of seven catalytic beta subunits, are sandwiched by two CC outer rings, each composed of seven alpha subunits. The catalytic CC chamber with the active sites is on the inside of the barrel. Has CC a gated structure, the ends of the cylinder being occluded by the CC N-termini of the alpha-subunits. Is capped at one or both ends by CC the proteasome regulatory ATPase, PAN. {ECO:0000255|HAMAP- CC Rule:MF_02113}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02113}. CC -!- SIMILARITY: Belongs to the peptidase T1B family. CC {ECO:0000255|HAMAP-Rule:MF_02113}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13624.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U7; -. DR STRING; 436308.Nmar_1728; -. DR MEROPS; T01.002; -. DR EnsemblBacteria; ABX13624; ABX13624; Nmar_1728. DR KEGG; nmr:Nmar_1728; -. DR eggNOG; arCOG00970; Archaea. DR eggNOG; COG0638; LUCA. DR HOGENOM; HOG000091083; -. DR KO; K03433; -. DR OMA; AIMAPPF; -. DR BioCyc; NMAR436308:GI3J-1773-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0019774; C:proteasome core complex, beta-subunit complex; IEA:UniProtKB-HAMAP. DR GO; GO:0004298; F:threonine-type endopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0010498; P:proteasomal protein catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.60.20.10; -; 1. DR HAMAP; MF_02113_A; Proteasome_B_A; 1. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR019983; Pept_T1A_Psome_bsu_arc. DR InterPro; IPR000243; Pept_T1A_subB. DR InterPro; IPR016050; Proteasome_bsu_CS. DR InterPro; IPR001353; Proteasome_sua/b. DR InterPro; IPR023333; Proteasome_suB-type. DR Pfam; PF00227; Proteasome; 1. DR PRINTS; PR00141; PROTEASOME. DR SUPFAM; SSF56235; SSF56235; 1. DR TIGRFAMs; TIGR03634; arc_protsome_B; 1. DR PROSITE; PS00854; PROTEASOME_BETA_1; 1. DR PROSITE; PS51476; PROTEASOME_BETA_2; 1. PE 3: Inferred from homology; KW Autocatalytic cleavage; Complete proteome; Cytoplasm; Hydrolase; KW Protease; Proteasome; Reference proteome; Threonine protease; Zymogen. FT PROPEP 1 12 Removed in mature form; by autocatalysis. FT {ECO:0000255|HAMAP-Rule:MF_02113}. FT /FTId=PRO_0000397386. FT CHAIN 13 210 Proteasome subunit beta 2. FT /FTId=PRO_0000397387. FT ACT_SITE 13 13 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_02113}. SQ SEQUENCE 210 AA; 22830 MW; 3869A9B674CF1D48 CRC64; MSNNVEEKIL HGTTTVGIKA KDGVVLCADM RASAGYFIAN NNTMKIQKID DHAGLTLAGG VADAQNIVDI LRYHSNLHRV EKHGPISIHS LARLCSLIFH QNRGYPFMAD ILVGGYDAEG PALFNIDMFG SVEKKAYVTT GSGSPVAYGL LEEEYREDLT VEEAKKIALR AVKAAIVRNI GTGDGINIAI MDKDGFRLLT EEQKKAVIEL // ID PYRI_NITMS Reviewed; 153 AA. AC A9A2Q6; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=Aspartate carbamoyltransferase regulatory chain {ECO:0000255|HAMAP-Rule:MF_00002}; GN Name=pyrI {ECO:0000255|HAMAP-Rule:MF_00002}; GN OrderedLocusNames=Nmar_1687; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in allosteric regulation of aspartate CC carbamoyltransferase. {ECO:0000255|HAMAP-Rule:MF_00002}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00002}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00002}; CC -!- SUBUNIT: Contains catalytic and regulatory chains. CC {ECO:0000255|HAMAP-Rule:MF_00002}. CC -!- SIMILARITY: Belongs to the PyrI family. {ECO:0000255|HAMAP- CC Rule:MF_00002}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13583.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Q6; -. DR STRING; 436308.Nmar_1687; -. DR EnsemblBacteria; ABX13583; ABX13583; Nmar_1687. DR KEGG; nmr:Nmar_1687; -. DR eggNOG; arCOG04229; Archaea. DR eggNOG; COG1781; LUCA. DR HOGENOM; HOG000113530; -. DR KO; K00610; -. DR OMA; MNVPSDR; -. DR BioCyc; NMAR436308:GI3J-1732-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009347; C:aspartate carbamoyltransferase complex; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0006221; P:pyrimidine nucleotide biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.20; -; 1. DR Gene3D; 3.30.70.140; -; 1. DR HAMAP; MF_00002; Asp_carb_tr_reg; 1. DR InterPro; IPR020545; Asp_carbamoyltransf_reg_N. DR InterPro; IPR002801; Asp_carbamoylTrfase_reg. DR InterPro; IPR020542; Asp_carbamoyltrfase_reg_C. DR Pfam; PF01948; PyrI; 1. DR Pfam; PF02748; PyrI_C; 1. DR ProDom; PD006194; Asp_carbamoylTrfase_reg; 1. DR SUPFAM; SSF54893; SSF54893; 1. DR SUPFAM; SSF57825; SSF57825; 1. DR TIGRFAMs; TIGR00240; ATCase_reg; 1. PE 3: Inferred from homology; KW Complete proteome; Metal-binding; Pyrimidine biosynthesis; KW Reference proteome; Zinc. FT CHAIN 1 153 Aspartate carbamoyltransferase regulatory FT chain. FT /FTId=PRO_1000088830. FT METAL 109 109 Zinc. {ECO:0000255|HAMAP-Rule:MF_00002}. FT METAL 114 114 Zinc. {ECO:0000255|HAMAP-Rule:MF_00002}. FT METAL 138 138 Zinc. {ECO:0000255|HAMAP-Rule:MF_00002}. FT METAL 141 141 Zinc. {ECO:0000255|HAMAP-Rule:MF_00002}. SQ SEQUENCE 153 AA; 17433 MW; 9883E4A184F449B5 CRC64; MEQSELMVRR IKEGTVIDHI DEGKGIQVLN ALRIDGSDGS LITIALNVPS GKFKKKDIIK VENKFLKDDD TNKLAVIAPK ATINMIKDYK LVEKRRVSLP NEIDRIFRCS NPDCVTNSTE HIESIMDVID KEGRVLKCRY CSRVLDVNQL KYN // ID PUR7_NITMS Reviewed; 274 AA. AC A9A5G9; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 57. DE RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000255|HAMAP-Rule:MF_00137}; DE EC=6.3.2.6 {ECO:0000255|HAMAP-Rule:MF_00137}; DE AltName: Full=SAICAR synthetase {ECO:0000255|HAMAP-Rule:MF_00137}; GN Name=purC {ECO:0000255|HAMAP-Rule:MF_00137}; GN OrderedLocusNames=Nmar_0784; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + 5-amino-1-(5-phospho-D- CC ribosyl)imidazole-4-carboxylate + L-aspartate = ADP + phosphate + CC (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- CC carboxamido)succinate. {ECO:0000255|HAMAP-Rule:MF_00137}. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5- CC amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 1/2. CC {ECO:0000255|HAMAP-Rule:MF_00137}. CC -!- SIMILARITY: Belongs to the SAICAR synthetase family. CC {ECO:0000255|HAMAP-Rule:MF_00137}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12680.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5G9; -. DR STRING; 436308.Nmar_0784; -. DR EnsemblBacteria; ABX12680; ABX12680; Nmar_0784. DR KEGG; nmr:Nmar_0784; -. DR eggNOG; arCOG04421; Archaea. DR eggNOG; COG0152; LUCA. DR HOGENOM; HOG000230360; -. DR KO; K01923; -. DR OMA; SLFEFGQ; -. DR BioCyc; NMAR436308:GI3J-810-MONOMER; -. DR UniPathway; UPA00074; UER00131. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004639; F:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.470.20; -; 1. DR HAMAP; MF_00137; SAICAR_synth; 1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR028923; SAICAR_synt/ADE2_N. DR InterPro; IPR001636; SAICAR_synth. DR InterPro; IPR018236; SAICAR_synthetase_CS. DR Pfam; PF01259; SAICAR_synt; 1. DR TIGRFAMs; TIGR00081; purC; 1. DR PROSITE; PS01057; SAICAR_SYNTHETASE_1; 1. DR PROSITE; PS01058; SAICAR_SYNTHETASE_2; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Ligase; Nucleotide-binding; KW Purine biosynthesis; Reference proteome. FT CHAIN 1 274 Phosphoribosylaminoimidazole- FT succinocarboxamide synthase. FT /FTId=PRO_1000095997. SQ SEQUENCE 274 AA; 31706 MW; 17802D1514235973 CRC64; MEFLTSGKVK DLYDVDESTL LFKFSDRVSA YDVKFKQDIP RKGEVLCKFA EFWFNELDVP NHFIKRESEN EILVKKMKML PIECVVRGYF YGSLVSRWKK GEVQVPEGTN TTLAAQLPEP IFDPTTKSEH DIPIDKNKAI EMNLVSEEQY NWLEKTSIEI YKKMAKITDD VGFILADLKL EFGILDDQIT LGDSIGPDEY RLWPKDSFEV GKIQEAYDKQ LLRDWLTANG YQKQFDDARD NGQEPIPPNI PSEIISKMTE RYVTAYEKIS GKSL // ID PURP_NITMS Reviewed; 341 AA. AC A9A1D3; DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 46. DE RecName: Full=5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase {ECO:0000255|HAMAP-Rule:MF_01163}; DE EC=6.3.4.23 {ECO:0000255|HAMAP-Rule:MF_01163}; DE AltName: Full=5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate--formate ligase {ECO:0000255|HAMAP-Rule:MF_01163}; GN Name=purP {ECO:0000255|HAMAP-Rule:MF_01163}; GN OrderedLocusNames=Nmar_0872; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the ATP- and formate-dependent formylation of CC 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'- CC monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1- CC beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of CC folates. {ECO:0000255|HAMAP-Rule:MF_01163}. CC -!- CATALYTIC ACTIVITY: ATP + formate + 5-amino-1-(5-phospho-D- CC ribosyl)imidazole-4-carboxamide = ADP + phosphate + 5-formamido-1- CC (5-phospho-D-ribosyl)imidazole-4-carboxamide. {ECO:0000255|HAMAP- CC Rule:MF_01163}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250}; CC Note=Binds 1 Mg(2+) or Mn(2+) ion per subunit. {ECO:0000250}; CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5- CC amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide (formate CC route): step 1/1. {ECO:0000255|HAMAP-Rule:MF_01163}. CC -!- SIMILARITY: Belongs to the phosphohexose mutase family. CC {ECO:0000255|HAMAP-Rule:MF_01163}. CC -!- SIMILARITY: Contains 1 ATP-grasp domain. {ECO:0000255|HAMAP- CC Rule:MF_01163}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12768.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1D3; -. DR STRING; 436308.Nmar_0872; -. DR EnsemblBacteria; ABX12768; ABX12768; Nmar_0872. DR KEGG; nmr:Nmar_0872; -. DR eggNOG; arCOG04346; Archaea. DR eggNOG; COG1759; LUCA. DR HOGENOM; HOG000228474; -. DR KO; K06863; -. DR OMA; KGGRGYF; -. DR BioCyc; NMAR436308:GI3J-900-MONOMER; -. DR UniPathway; UPA00074; UER00134. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016879; F:ligase activity, forming carbon-nitrogen bonds; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 2. DR Gene3D; 3.40.50.20; -; 1. DR HAMAP; MF_01163; IMP_biosynth_PurP; 1. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR023656; IMP_biosynth_PurP. DR InterPro; IPR009720; IMP_biosynth_PurP_C. DR InterPro; IPR010672; IMP_biosynth_PurP_N. DR InterPro; IPR016185; PreATP-grasp_dom. DR Pfam; PF06849; DUF1246; 1. DR Pfam; PF06973; DUF1297; 1. DR PIRSF; PIRSF004602; ATPgrasp_PurP; 1. DR SUPFAM; SSF52440; SSF52440; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Ligase; Magnesium; Manganese; KW Metal-binding; Nucleotide-binding; Purine biosynthesis; KW Reference proteome. FT CHAIN 1 341 5-formaminoimidazole-4-carboxamide-1- FT (beta)-D-ribofuranosyl 5'-monophosphate FT synthetase. FT /FTId=PRO_0000348630. FT DOMAIN 106 317 ATP-grasp. {ECO:0000255|HAMAP- FT Rule:MF_01163}. FT NP_BIND 132 188 ATP. {ECO:0000255|HAMAP-Rule:MF_01163}. FT METAL 277 277 Magnesium or manganese. FT {ECO:0000255|HAMAP-Rule:MF_01163}. FT METAL 290 290 Magnesium or manganese. FT {ECO:0000255|HAMAP-Rule:MF_01163}. FT BINDING 10 10 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01163}. FT BINDING 77 77 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01163}. FT BINDING 210 210 ATP. {ECO:0000255|HAMAP-Rule:MF_01163}. FT BINDING 238 238 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_01163}. SQ SEQUENCE 341 AA; 38509 MW; BF49E21C202A0D33 CRC64; MASIATLGSH CSLQVLKGAK DEGLKTILVC EKKREKLYRR FPFIDELIIV DKFREVLDEK VQSTLEQNDA VLIPHGTLIA QMSSDEIESI KTPIFGNKWI LRWESDREMK EKLMREATLP MPKPVTNPSE IEKLSIVKRQ GAAGGKGYFM AANEDDYNTK RNQLISEGVI SEDETLYIQE YAAGVLAYLT FFYSPLKEEL EFYGVDQRHE SDIEGLGRIP AEQQMKSNKV PSFNVIGNSP LVLRESLLDE VYTMGENFVE ASKRIVAPGM NGPFCIEGVY DENAQFTSFE FSARIVAGSN IYMDGSPYYN LLFNETMSMG KRIAREVKTA AETNQLDKVT T // ID PUS10_NITMS Reviewed; 381 AA. AC A9A215; DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE RecName: Full=tRNA pseudouridine synthase Pus10 {ECO:0000255|HAMAP-Rule:MF_01893}; DE EC=5.4.99.- {ECO:0000255|HAMAP-Rule:MF_01893}; DE AltName: Full=tRNA pseudouridine 54/55 synthase {ECO:0000255|HAMAP-Rule:MF_01893}; DE Short=Psi54/55 synthase {ECO:0000255|HAMAP-Rule:MF_01893}; GN Name=pus10 {ECO:0000255|HAMAP-Rule:MF_01893}; GN OrderedLocusNames=Nmar_0532; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Responsible for synthesis of pseudouridine from uracil- CC 54 and uracil-55 in the psi GC loop of transfer RNAs. CC {ECO:0000255|HAMAP-Rule:MF_01893}. CC -!- CATALYTIC ACTIVITY: tRNA uridine = tRNA pseudouridine. CC {ECO:0000255|HAMAP-Rule:MF_01893}. CC -!- SIMILARITY: Belongs to the pseudouridine synthase Pus10 family. CC {ECO:0000255|HAMAP-Rule:MF_01893}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12428.1; -; Genomic_DNA. DR ProteinModelPortal; A9A215; -. DR STRING; 436308.Nmar_0532; -. DR EnsemblBacteria; ABX12428; ABX12428; Nmar_0532. DR KEGG; nmr:Nmar_0532; -. DR eggNOG; arCOG01015; Archaea. DR eggNOG; COG1258; LUCA. DR KO; K07583; -. DR OMA; RPFVLQI; -. DR BioCyc; NMAR436308:GI3J-554-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR GO; GO:0031119; P:tRNA pseudouridine synthesis; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01893; Pus10_arch; 1. DR InterPro; IPR005912; Pus10. DR InterPro; IPR004114; THUMP_dom. DR Pfam; PF02926; THUMP; 1. PE 3: Inferred from homology; KW Complete proteome; Isomerase; Reference proteome; RNA-binding; KW tRNA processing. FT CHAIN 1 381 tRNA pseudouridine synthase Pus10. FT /FTId=PRO_0000407393. FT ACT_SITE 226 226 Nucleophile. {ECO:0000255|HAMAP- FT Rule:MF_01893}. SQ SEQUENCE 381 AA; 43236 MW; 0B6351987CC26473 CRC64; MTTYQKIIPI ANQILKKYDL CDHCLGRLFT KQLYLSSNKL LGKKLKKNSK SSQRCYICKN LFDNLNYFLN MMIDSASHYS YSSFSVGATI KPSIIDRDDV IRSKYKLKGI DGIKTDVTKE LGKLFSKKTK KSFDSLDPEI VFTVNLKDEF CDIRSKSLTL SGRYVKPVRG FLQKQKSCSN CSGKGCRICD FHGIKEFDSV EGEISQFLFK KLGGTTAKFT WIGGEDKSSL ILGTGRPFFV KIQNPHKRKL RAKSANLEHI KVSNFKIVAD SPKKPLKFNS SVEARISTSS IIDAKLLRKL KNLTKKPIAV YEKSGKRSEK RILSIKYKKS DETSFTLFFK FEGGLPVKRF VTGDDVSPGI SQILDMSCKC LEFDFHDVEV K // ID PYRB_NITMS Reviewed; 309 AA. AC A9A2Q5; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 57. DE RecName: Full=Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; DE EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001}; DE AltName: Full=Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; DE Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001}; GN Name=pyrB {ECO:0000255|HAMAP-Rule:MF_00001}; GN OrderedLocusNames=Nmar_1686; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: Carbamoyl phosphate + L-aspartate = phosphate CC + N-carbamoyl-L-aspartate. {ECO:0000255|HAMAP-Rule:MF_00001}. CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; (S)-dihydroorotate from bicarbonate: step 2/3. CC {ECO:0000255|HAMAP-Rule:MF_00001}. CC -!- SUBUNIT: Heterooligomer of catalytic and regulatory chains. CC {ECO:0000255|HAMAP-Rule:MF_00001}. CC -!- SIMILARITY: Belongs to the ATCase/OTCase family. CC {ECO:0000255|HAMAP-Rule:MF_00001}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13582.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Q5; -. DR SMR; A9A2Q5; 3-305. DR STRING; 436308.Nmar_1686; -. DR EnsemblBacteria; ABX13582; ABX13582; Nmar_1686. DR KEGG; nmr:Nmar_1686; -. DR eggNOG; arCOG00911; Archaea. DR eggNOG; COG0540; LUCA. DR HOGENOM; HOG000022685; -. DR KO; K00609; -. DR OMA; KQSFYGV; -. DR BioCyc; NMAR436308:GI3J-1731-MONOMER; -. DR UniPathway; UPA00070; UER00116. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004070; F:aspartate carbamoyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.1370; -; 2. DR HAMAP; MF_00001; Asp_carb_tr; 1. DR InterPro; IPR006132; Asp/Orn_carbamoyltranf_P-bd. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR002082; Asp_carbamoyltransf. DR InterPro; IPR006131; Asp_carbamoyltransf_Asp/Orn-bd. DR Pfam; PF00185; OTCace; 1. DR Pfam; PF02729; OTCace_N; 1. DR PRINTS; PR00100; AOTCASE. DR PRINTS; PR00101; ATCASE. DR SUPFAM; SSF53671; SSF53671; 1. DR TIGRFAMs; TIGR00670; asp_carb_tr; 1. DR PROSITE; PS00097; CARBAMOYLTRANSFERASE; 1. PE 3: Inferred from homology; KW Complete proteome; Pyrimidine biosynthesis; Reference proteome; KW Transferase. FT CHAIN 1 309 Aspartate carbamoyltransferase. FT /FTId=PRO_1000088782. SQ SEQUENCE 309 AA; 35032 MW; 7AEFD3B19964A9BE CRC64; MNEFYQKDII SIKDFSKDQL EQIFQSTDKI ISLDPIDRRE ICKGKTLGYL FYEPSTRTRL SFEAAMASIG GNSLGISDIT SSSTQKGESL ADTVRIISIY SDAMVLRHPL DGSSRFAAEV SDKPVINAGS GTEEHPTQAI QDLYTIKKEK KKIDRLKIGI VGDLKYGRTV YSLLHGLGNY DVDVRLISPE SLRIRSDSTY EIKQKLDYTE STNIEDHIDE LDVLYVTRIQ KERFPDEEEY LKVKGSYVVG LDLLKQMKDD SIILHPLPRI DEISTDVDKT KNAKYFEQAE YGKYTRAALL GLTLNENGF // ID RL14_NITMS Reviewed; 140 AA. AC A9A5I5; DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE RecName: Full=50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; GN Name=rpl14 {ECO:0000255|HAMAP-Rule:MF_01367}; GN OrderedLocusNames=Nmar_0800; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to 23S rRNA. Forms part of two intersubunit CC bridges in the 70S ribosome. {ECO:0000255|HAMAP-Rule:MF_01367}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with CC proteins L3 and L24e, part of which may contact the 16S rRNA in 2 CC intersubunit bridges. {ECO:0000255|HAMAP-Rule:MF_01367}. CC -!- SIMILARITY: Belongs to the ribosomal protein L14P family. CC {ECO:0000255|HAMAP-Rule:MF_01367}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12696.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I5; -. DR STRING; 436308.Nmar_0800; -. DR EnsemblBacteria; ABX12696; ABX12696; Nmar_0800. DR KEGG; nmr:Nmar_0800; -. DR eggNOG; arCOG04095; Archaea. DR eggNOG; COG0093; LUCA. DR HOGENOM; HOG000183703; -. DR KO; K02874; -. DR OMA; ELRKKTM; -. DR BioCyc; NMAR436308:GI3J-827-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.150.20; -; 1. DR HAMAP; MF_01367; Ribosomal_L14; 1. DR InterPro; IPR000218; Ribosomal_L14P. DR InterPro; IPR019972; Ribosomal_L14P_CS. DR PANTHER; PTHR11761; PTHR11761; 1. DR Pfam; PF00238; Ribosomal_L14; 1. DR SMART; SM01374; Ribosomal_L14; 1. DR SUPFAM; SSF50193; SSF50193; 1. DR PROSITE; PS00049; RIBOSOMAL_L14; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 140 50S ribosomal protein L14. FT /FTId=PRO_0000355851. SQ SEQUENCE 140 AA; 15111 MW; 63B091FB333BF962 CRC64; MAKQAGKGVE EFRPYVTKVI PVGANIVCAD NSGAKILEVI NVPRHRTRAS RLPSASVGDF CNVVVKKGPA ELRKQVYGAV IIRQKYPVRR LNGVRVCFED NAAVLITPEG ETKGTDIKGP VAAEASEKWP RVANLASMVV // ID RL11_NITMS Reviewed; 159 AA. AC A9A582; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 59. DE RecName: Full=50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; GN Name=rpl11 {ECO:0000255|HAMAP-Rule:MF_00736}; GN OrderedLocusNames=Nmar_0385; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Forms part of the ribosomal stalk which helps the CC ribosome interact with GTP-bound translation factors. CC {ECO:0000255|HAMAP-Rule:MF_00736}. CC -!- SUBUNIT: Part of the ribosomal stalk of the 50S ribosomal subunit. CC Interacts with L10 and the large rRNA to form the base of the CC stalk. L10 forms an elongated spine to which L12 dimers bind in a CC sequential fashion forming a multimeric L10(L12)X complex. CC {ECO:0000255|HAMAP-Rule:MF_00736}. CC -!- SIMILARITY: Belongs to the ribosomal protein L11P family. CC {ECO:0000255|HAMAP-Rule:MF_00736}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12281.1; -; Genomic_DNA. DR ProteinModelPortal; A9A582; -. DR STRING; 436308.Nmar_0385; -. DR EnsemblBacteria; ABX12281; ABX12281; Nmar_0385. DR KEGG; nmr:Nmar_0385; -. DR eggNOG; arCOG04372; Archaea. DR eggNOG; COG0080; LUCA. DR HOGENOM; HOG000082124; -. DR KO; K02867; -. DR OMA; STCKAMG; -. DR BioCyc; NMAR436308:GI3J-401-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0070180; F:large ribosomal subunit rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.250; -; 1. DR Gene3D; 3.30.1550.10; -; 1. DR HAMAP; MF_00736; Ribosomal_L11; 1. DR InterPro; IPR000911; Ribosomal_L11/L12. DR InterPro; IPR020783; Ribosomal_L11_C. DR InterPro; IPR020784; Ribosomal_L11_N. DR PANTHER; PTHR11661; PTHR11661; 1. DR Pfam; PF00298; Ribosomal_L11; 1. DR Pfam; PF03946; Ribosomal_L11_N; 1. DR SMART; SM00649; RL11; 1. DR SUPFAM; SSF46906; SSF46906; 1. DR SUPFAM; SSF54747; SSF54747; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 159 50S ribosomal protein L11. FT /FTId=PRO_1000195758. SQ SEQUENCE 159 AA; 16450 MW; CBDC514580B5BC16 CRC64; MGEQKISSLV TGGGASAGPP LGPALGPLGV NIMEVINAIN DKTKDFEGMK VPVTVIVDSD TKKYEIEIGI PSAAALIMKE AGIQKGSGAS GTEWAGDVTM DAVVKVANTK LENSYASSLK SVAKTIVGTC LALGVKVEGK TPKEITAEIN EGKWDEKFQ // ID RL24_NITMS Reviewed; 168 AA. AC A9A5I4; DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=50S ribosomal protein L24P {ECO:0000255|HAMAP-Rule:MF_01326}; GN Name=rpl24p {ECO:0000255|HAMAP-Rule:MF_01326}; GN OrderedLocusNames=Nmar_0799; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: One of two assembly initiator proteins, it binds CC directly to the 5'-end of the 23S rRNA, where it nucleates CC assembly of the 50S subunit. {ECO:0000255|HAMAP-Rule:MF_01326}. CC -!- FUNCTION: Located at the polypeptide exit tunnel on the outside of CC the subunit. {ECO:0000255|HAMAP-Rule:MF_01326}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01326}. CC -!- SIMILARITY: Belongs to the ribosomal protein L24P family. CC {ECO:0000255|HAMAP-Rule:MF_01326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12695.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I4; -. DR STRING; 436308.Nmar_0799; -. DR EnsemblBacteria; ABX12695; ABX12695; Nmar_0799. DR KEGG; nmr:Nmar_0799; -. DR eggNOG; arCOG04094; Archaea. DR eggNOG; COG0198; LUCA. DR HOGENOM; HOG000216571; -. DR KO; K02895; -. DR OMA; MADINPK; -. DR BioCyc; NMAR436308:GI3J-826-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.30; -; 1. DR HAMAP; MF_01326_A; Ribosomal_L24_A; 1. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR005825; Ribosomal_L24/26_CS. DR InterPro; IPR005756; Ribosomal_L26/L24P_euk/arc. DR InterPro; IPR008991; Translation_prot_SH3-like. DR PANTHER; PTHR11143; PTHR11143; 1. DR Pfam; PF16906; Ribosomal_L26; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR TIGRFAMs; TIGR01080; rplX_A_E; 1. DR PROSITE; PS01108; RIBOSOMAL_L24; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 168 50S ribosomal protein L24P. FT /FTId=PRO_0000355737. SQ SEQUENCE 168 AA; 18948 MW; 5FB0DA322AC381E2 CRC64; MKPTKMRNKM IYRASYQTKS KQLGSALSKD LQKKYGKRSV RVNEGDSVTI LRGEFKGVDG KVAEVSTAKS SVAIEGVKKE KTKGDKFDVF IHTSNLLVTS LNTEDKWRIA KLEGKDPRKQ PKEAPKAAEK PAKEEPKKET PKAEEKPAKE EPKETKVEKK SEEKEDEN // ID RL30_NITMS Reviewed; 155 AA. AC A9A597; DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=50S ribosomal protein L30P {ECO:0000255|HAMAP-Rule:MF_01371}; GN Name=rpl30p {ECO:0000255|HAMAP-Rule:MF_01371}; GN OrderedLocusNames=Nmar_0400; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01371}. CC -!- SIMILARITY: Belongs to the ribosomal protein L30P family. CC {ECO:0000255|HAMAP-Rule:MF_01371}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12296.1; -; Genomic_DNA. DR ProteinModelPortal; A9A597; -. DR STRING; 436308.Nmar_0400; -. DR EnsemblBacteria; ABX12296; ABX12296; Nmar_0400. DR KEGG; nmr:Nmar_0400; -. DR eggNOG; arCOG04086; Archaea. DR eggNOG; COG1841; LUCA. DR HOGENOM; HOG000170918; -. DR KO; K02907; -. DR OMA; IKPWFAL; -. DR BioCyc; NMAR436308:GI3J-417-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.15.30; -; 1. DR Gene3D; 3.30.1390.20; -; 2. DR HAMAP; MF_01371_A; Ribosomal_L30_A; 1. DR InterPro; IPR005997; Ribosomal_L30_arc. DR InterPro; IPR023106; Ribosomal_L30_central_dom_arc. DR InterPro; IPR016082; Ribosomal_L30_ferredoxin-like. DR Pfam; PF00327; Ribosomal_L30; 1. DR SUPFAM; SSF55129; SSF55129; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 155 50S ribosomal protein L30P. FT /FTId=PRO_0000347170. SQ SEQUENCE 155 AA; 17454 MW; 90A1843D43986B6C CRC64; MANAVLVVRI KGQADCPYWA STTMDLLKLE RKYRAVILPA KDNLLGMLKK VQHYVAWVDL DTELAQELID KKARKSGYKK VTPEDLKELG YASSAELAAA LTEGKTMLSK LKPLKPWFAL APPRHGFKRS TKRLYGQKGI LGRNKELATI VRNMI // ID RL22_NITMS Reviewed; 152 AA. AC A9A5J0; DT 25-NOV-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=50S ribosomal protein L22 {ECO:0000255|HAMAP-Rule:MF_01331}; GN Name=rpl22 {ECO:0000255|HAMAP-Rule:MF_01331}; GN OrderedLocusNames=Nmar_0805; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: This protein binds specifically to 23S rRNA. It makes CC multiple contacts with different domains of the 23S rRNA in the CC assembled 50S subunit and ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01331}. CC -!- FUNCTION: The globular domain of the protein is located near the CC polypeptide exit tunnel on the outside of the subunit, while an CC extended beta-hairpin is found that lines the wall of the exit CC tunnel in the center of the 70S ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01331}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01331}. CC -!- SIMILARITY: Belongs to the ribosomal protein L22P family. CC {ECO:0000255|HAMAP-Rule:MF_01331}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12701.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5J0; -. DR STRING; 436308.Nmar_0805; -. DR EnsemblBacteria; ABX12701; ABX12701; Nmar_0805. DR KEGG; nmr:Nmar_0805; -. DR eggNOG; arCOG04098; Archaea. DR eggNOG; COG0091; LUCA. DR HOGENOM; HOG000205045; -. DR KO; K02890; -. DR OMA; PFNEQTT; -. DR BioCyc; NMAR436308:GI3J-832-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.470.10; -; 1. DR HAMAP; MF_01331_A; Ribosomal_L22_A; 1. DR InterPro; IPR001063; Ribosomal_L22. DR InterPro; IPR005721; Ribosomal_L22/L17_euk/arc. DR PANTHER; PTHR11593; PTHR11593; 1. DR Pfam; PF00237; Ribosomal_L22; 1. DR SUPFAM; SSF54843; SSF54843; 1. DR TIGRFAMs; TIGR01038; uL22_arch_euk; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 152 50S ribosomal protein L22. FT /FTId=PRO_0000354545. SQ SEQUENCE 152 AA; 17338 MW; 4D4FD3138B318FC2 CRC64; MGRFGYAFQN YDATRHVRSS VREKDMSHKH AREVAVAIKG LSIEKARDYL QAVVNKDRAV AFRRYKNQVG HKADPGMMSG RYPQKTAREF IKVLDNLESN AEYKGMDLDR LKIVNATVHK GVIVKRFIPR AMGRATPKNN VLTHVELVAQ EI // ID RL2_NITMS Reviewed; 244 AA. AC A9A141; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE RecName: Full=50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320}; GN Name=rpl2 {ECO:0000255|HAMAP-Rule:MF_01320}; GN OrderedLocusNames=Nmar_0102; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: One of the primary rRNA binding proteins. Required for CC association of the 30S and 50S subunits to form the 70S ribosome, CC for tRNA binding and peptide bond formation. It has been suggested CC to have peptidyltransferase activity; this is somewhat CC controversial. Makes several contacts with the 16S rRNA in the 70S CC ribosome. {ECO:0000255|HAMAP-Rule:MF_01320}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a bridge to the CC 30S subunit in the 70S ribosome. {ECO:0000255|HAMAP- CC Rule:MF_01320}. CC -!- SIMILARITY: Belongs to the ribosomal protein L2P family. CC {ECO:0000255|HAMAP-Rule:MF_01320}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12002.1; -; Genomic_DNA. DR ProteinModelPortal; A9A141; -. DR STRING; 436308.Nmar_0102; -. DR EnsemblBacteria; ABX12002; ABX12002; Nmar_0102. DR KEGG; nmr:Nmar_0102; -. DR eggNOG; arCOG04067; Archaea. DR eggNOG; COG0090; LUCA. DR HOGENOM; HOG000232983; -. DR KO; K02886; -. DR OMA; HFRDPYK; -. DR BioCyc; NMAR436308:GI3J-105-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.30; -; 1. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 4.10.950.10; -; 1. DR HAMAP; MF_01320_A; Ribosomal_L2_A; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR022666; Rbsml_prot_L2_RNA-bd_dom. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR002171; Ribosomal_L2. DR InterPro; IPR023672; Ribosomal_L2_arc. DR InterPro; IPR022669; Ribosomal_L2_C. DR InterPro; IPR014726; Ribosomal_L2_dom3. DR InterPro; IPR008991; Translation_prot_SH3-like. DR PANTHER; PTHR13691; PTHR13691; 1. DR Pfam; PF00181; Ribosomal_L2; 1. DR Pfam; PF03947; Ribosomal_L2_C; 1. DR PIRSF; PIRSF002158; Ribosomal_L2; 1. DR SMART; SM01383; Ribosomal_L2; 1. DR SMART; SM01382; Ribosomal_L2_C; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR SUPFAM; SSF50249; SSF50249; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 244 50S ribosomal protein L2. FT /FTId=PRO_1000141587. SQ SEQUENCE 244 AA; 26000 MW; 829AACE1A6B8922B CRC64; MGKRPLVRRR GRGGNQFRST STGKVGTKAN YPRFPLSEQH EGEIIDLVHE RGREAPLAKV RFEDGSVSFV PAVLGAKVGE TLQFGLKSKI EKGNVISIQN IPDGTIVCNI EKHFGDGGAI VKSAGTDATV FSHGDEGVTV KLPSGKFTTL NPKNRAMIGT LAGGGASERP FMSAGGKWRN FKAKGKKYPI VRGVAQAAYV HPHGGGRHQH VGQSSTVSRD TPPGAKVGSI AARKTGRARI KERK // ID RLME_NITMS Reviewed; 197 AA. AC A9A3M9; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 48. DE RecName: Full=Ribosomal RNA large subunit methyltransferase E {ECO:0000255|HAMAP-Rule:MF_01547}; DE EC=2.1.1.166 {ECO:0000255|HAMAP-Rule:MF_01547}; DE AltName: Full=23S rRNA Um2552 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; DE AltName: Full=rRNA (uridine-2'-O-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01547}; GN Name=rlmE {ECO:0000255|HAMAP-Rule:MF_01547}; GN Synonyms=rrmJ {ECO:0000255|HAMAP-Rule:MF_01547}; GN OrderedLocusNames=Nmar_1395; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Specifically methylates the uridine in position 2552 of CC 23S rRNA at the 2'-O position of the ribose in the fully assembled CC 50S ribosomal subunit. {ECO:0000255|HAMAP-Rule:MF_01547}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + uridine(2552) in 23S CC rRNA = S-adenosyl-L-homocysteine + 2'-O-methyluridine(2552) in 23S CC rRNA. {ECO:0000255|HAMAP-Rule:MF_01547}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01547}. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. RNA methyltransferase RlmE family. CC {ECO:0000255|HAMAP-Rule:MF_01547}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13291.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M9; -. DR STRING; 436308.Nmar_1395; -. DR EnsemblBacteria; ABX13291; ABX13291; Nmar_1395. DR KEGG; nmr:Nmar_1395; -. DR eggNOG; arCOG00079; Archaea. DR eggNOG; COG0293; LUCA. DR HOGENOM; HOG000162366; -. DR KO; K02427; -. DR OMA; DKRWVLQ; -. DR BioCyc; NMAR436308:GI3J-1430-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008650; F:rRNA (uridine-2'-O-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_01547; RNA_methyltr_E; 1. DR InterPro; IPR015507; rRNA-MeTfrase_E. DR InterPro; IPR002877; rRNA_MeTrfase_FtsJ_dom. DR InterPro; IPR029063; SAM-dependent_MTases. DR PANTHER; PTHR10920; PTHR10920; 1. DR Pfam; PF01728; FtsJ; 1. DR PIRSF; PIRSF005461; 23S_rRNA_mtase; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 197 Ribosomal RNA large subunit FT methyltransferase E. FT /FTId=PRO_1000195036. FT ACT_SITE 152 152 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01547}. FT BINDING 52 52 S-adenosyl-L-methionine; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_01547}. FT BINDING 54 54 S-adenosyl-L-methionine; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_01547}. FT BINDING 72 72 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01547}. FT BINDING 88 88 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01547}. FT BINDING 112 112 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01547}. SQ SEQUENCE 197 AA; 22374 MW; CB4F32C3381EEB52 CRC64; MKLLDARKDH YRKLAHEQGF RSRAAYKLKE LNQSYRIIGP GFYVLDLGCA PGGWTQMAIK LAGNQGKVMG IDLSYVEEIP GAEILRGDIE DENVVDDVMN YFERKVNAVI CDLSPKVSGN WSVDHAKQIS LNYDCTKIMD KVLAHKGNAV FKVFDGEYSM EFRDYVKKKF ARINLTKPKA SRKQSSELYY VCLGFIG // ID RL37_NITMS Reviewed; 55 AA. AC A9A2Y8; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=50S ribosomal protein L37e; GN Name=rpl37e; OrderedLocusNames=Nmar_0220; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000250}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000250}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000250}; CC -!- SIMILARITY: Belongs to the ribosomal protein L37e family. CC {ECO:0000305}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12116.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Y8; -. DR STRING; 436308.Nmar_0220; -. DR EnsemblBacteria; ABX12116; ABX12116; Nmar_0220. DR KEGG; nmr:Nmar_0220; -. DR eggNOG; arCOG04126; Archaea. DR eggNOG; COG2126; LUCA. DR HOGENOM; HOG000111075; -. DR KO; K02922; -. DR OMA; RTKRCSH; -. DR BioCyc; NMAR436308:GI3J-225-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 2.20.25.30; -; 1. DR InterPro; IPR011331; Ribosomal_L37ae/L37e. DR InterPro; IPR001569; Ribosomal_L37e. DR InterPro; IPR011332; Ribosomal_zn-bd. DR Pfam; PF01907; Ribosomal_L37e; 1. DR ProDom; PD005132; Ribosomal_L37e; 1. DR SUPFAM; SSF57829; SSF57829; 1. PE 3: Inferred from homology; KW Complete proteome; Metal-binding; Reference proteome; KW Ribonucleoprotein; Ribosomal protein; RNA-binding; rRNA-binding; Zinc; KW Zinc-finger. FT CHAIN 1 55 50S ribosomal protein L37e. FT /FTId=PRO_1000146608. FT ZN_FING 20 38 C4-type. {ECO:0000255}. FT METAL 20 20 Zinc. {ECO:0000250}. FT METAL 23 23 Zinc. {ECO:0000250}. FT METAL 35 35 Zinc. {ECO:0000250}. FT METAL 38 38 Zinc. {ECO:0000250}. SQ SEQUENCE 55 AA; 6512 MW; 3089F13E230FBB3E CRC64; MVKGTTSMGG FTKKKVHIRC RRCGKNSLHK RHHQCASCGF PEAKRRKYSW IKWYT // ID RL7A_NITMS Reviewed; 128 AA. AC A9A2Z3; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE RecName: Full=50S ribosomal protein L7Ae {ECO:0000255|HAMAP-Rule:MF_00326}; DE AltName: Full=Ribosomal protein L8e {ECO:0000255|HAMAP-Rule:MF_00326}; GN Name=rpl7ae {ECO:0000255|HAMAP-Rule:MF_00326}; GN OrderedLocusNames=Nmar_0225; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Multifunctional RNA-binding protein that recognizes the CC K-turn motif in ribosomal RNA, the RNA component of RNase P, box CC H/ACA, box C/D and box C'/D' sRNAs. {ECO:0000255|HAMAP- CC Rule:MF_00326}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Probably part of the CC RNase P complex. {ECO:0000255|HAMAP-Rule:MF_00326}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00326}. CC -!- SIMILARITY: Belongs to the ribosomal protein L7Ae family. CC {ECO:0000255|HAMAP-Rule:MF_00326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12121.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z3; -. DR STRING; 436308.Nmar_0225; -. DR EnsemblBacteria; ABX12121; ABX12121; Nmar_0225. DR KEGG; nmr:Nmar_0225; -. DR eggNOG; arCOG01751; Archaea. DR eggNOG; COG1358; LUCA. DR HOGENOM; HOG000055225; -. DR KO; K02936; -. DR OMA; FIETQDD; -. DR BioCyc; NMAR436308:GI3J-231-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0004526; F:ribonuclease P activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR GO; GO:0001682; P:tRNA 5'-leader removal; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1330.30; -; 1. DR HAMAP; MF_00326; Ribosomal_L7Ae_Arch; 1. DR InterPro; IPR029064; L30e-like. DR InterPro; IPR004038; Ribosomal_L7Ae/L30e/S12e/Gad45. DR InterPro; IPR018492; Ribosomal_L7Ae/L8/Nhp2. DR InterPro; IPR022481; Ribosomal_L7Ae_arc. DR InterPro; IPR000948; Ribosomal_L7Ae_prok. DR Pfam; PF01248; Ribosomal_L7Ae; 1. DR PRINTS; PR00881; L7ARS6FAMILY. DR PRINTS; PR00884; RIBOSOMALHS6. DR SUPFAM; SSF55315; SSF55315; 1. DR TIGRFAMs; TIGR03677; eL8_ribo; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding; tRNA processing. FT CHAIN 1 128 50S ribosomal protein L7Ae. FT /FTId=PRO_1000194099. SQ SEQUENCE 128 AA; 13444 MW; 5A0D0EF55E6545EF CRC64; MGKAYYVKFE TPEDLVNPIL EAVRVASTSG KVKKGTNEAT KAIERGTSKL IVIAEDVEPP EVVAHLPILC EEQGAAFAFV PSKQELGKSL GIDITSAAAA ILDAGDAQHI VDQVVSSIAK IKGGKTDQ // ID RLMN_NITMS Reviewed; 351 AA. AC A9A3L9; DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE RecName: Full=Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; DE EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_01849}; DE AltName: Full=23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; DE AltName: Full=23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; GN Name=rlmN {ECO:0000255|HAMAP-Rule:MF_01849}; GN OrderedLocusNames=Nmar_1385; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Specifically methylates position 2 of adenine 2503 in CC 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- CATALYTIC ACTIVITY: 2 S-adenosyl-L-methionine + adenine(2503) in CC 23S rRNA + 2 reduced [2Fe-2S] ferredoxin = S-adenosyl-L- CC homocysteine + L-methionine + 5'-deoxyadenosine + 2- CC methyladenine(2503) in 23S rRNA + 2 oxidized [2Fe-2S] ferredoxin. CC {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01849}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|HAMAP-Rule:MF_01849}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- MISCELLANEOUS: Reaction proceeds by a ping-pong mechanism CC involving intermediate methylation of a conserved cysteine CC residue. {ECO:0000255|HAMAP-Rule:MF_01849}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. RlmN family. CC {ECO:0000255|HAMAP-Rule:MF_01849}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13281.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3L9; -. DR STRING; 436308.Nmar_1385; -. DR EnsemblBacteria; ABX13281; ABX13281; Nmar_1385. DR KEGG; nmr:Nmar_1385; -. DR eggNOG; ENOG4102U0Z; Archaea. DR eggNOG; COG0820; LUCA. DR HOGENOM; HOG000217991; -. DR KO; K06941; -. DR OMA; VNNRWSV; -. DR BioCyc; NMAR436308:GI3J-1420-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0070040; F:rRNA (adenine-C2-)-methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070475; P:rRNA base methylation; IEA:UniProtKB-HAMAP. DR GO; GO:0030488; P:tRNA methylation; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01849; RNA_methyltr_RlmN; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR027492; RNA_MTrfase_RlmN. DR InterPro; IPR004383; rRNA_lsu_MTrfase_RlmN/Cfr. DR InterPro; IPR007197; rSAM. DR PANTHER; PTHR30544; PTHR30544; 1. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF006004; CHP00048; 1. DR TIGRFAMs; TIGR00048; rRNA_mod_RlmN; 1. PE 3: Inferred from homology; KW 4Fe-4S; Complete proteome; Cytoplasm; Disulfide bond; Iron; KW Iron-sulfur; Metal-binding; Methyltransferase; Reference proteome; KW rRNA processing; S-adenosyl-L-methionine; Transferase. FT CHAIN 1 351 Ribosomal RNA large subunit FT methyltransferase N. FT /FTId=PRO_0000350548. FT REGION 169 170 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT REGION 224 226 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT ACT_SITE 92 92 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01849}. FT ACT_SITE 342 342 S-methylcysteine intermediate. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT METAL 119 119 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT METAL 123 123 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT METAL 126 126 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT BINDING 201 201 S-adenosyl-L-methionine. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT BINDING 300 300 S-adenosyl-L-methionine; via amide FT nitrogen and carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_01849}. FT DISULFID 112 342 (transient). {ECO:0000255|HAMAP- FT Rule:MF_01849}. SQ SEQUENCE 351 AA; 39021 MW; 50015721647CCA7C CRC64; MTDLYRLLPE EMEKLVIDMG YDRYRADQIL LPLYYKFPKD INDIPQLPKK LREEFTEAGY TIGSAKEIHR VVSDDGDTTK LLLELSDGSS VETVLMQYEP TKIGGHPRST ICVSTQIGCA MGCVFCATGQ MGFETNLKAE HIVSQVIHFA ELLEQRGEHV TNLVFMGMGE PMANYDEMIR AVKILTHDRG FGLGQRHITI STIGITSGIE KLAEENLQIG LAISLHAPNN ELRKKLVPTA GPNSVEDIIK SGRDYFKKTG RRVTFEYALM EGVNDSPEIA HELARLLRGN GSHVNIIPIN PTAGDFKRPS EKNVLEFEQI LRKSGVNCTV RVEKGTEISA ACGQLRTDIV G // ID RL5_NITMS Reviewed; 173 AA. AC A9A5I2; DT 03-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=50S ribosomal protein L5 {ECO:0000255|HAMAP-Rule:MF_01333}; GN Name=rpl5 {ECO:0000255|HAMAP-Rule:MF_01333}; GN OrderedLocusNames=Nmar_0797; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: This is 1 of the proteins that binds and probably CC mediates the attachment of the 5S RNA into the large ribosomal CC subunit, where it forms part of the central protuberance. In the CC 70S ribosome it contacts protein S13 of the 30S subunit (bridge CC B1b), connecting the 2 subunits; this bridge is implicated in CC subunit movement. May contact the P site tRNA; the 5S rRNA and CC some of its associated proteins might help stabilize positioning CC of ribosome-bound tRNAs. {ECO:0000255|HAMAP-Rule:MF_01333}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit; contacts the 5S rRNA CC and probably tRNA. Forms a bridge to the 30S subunit in the 70S CC ribosome. {ECO:0000255|HAMAP-Rule:MF_01333}. CC -!- SIMILARITY: Belongs to the ribosomal protein L5P family. CC {ECO:0000255|HAMAP-Rule:MF_01333}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12693.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I2; -. DR STRING; 436308.Nmar_0797; -. DR EnsemblBacteria; ABX12693; ABX12693; Nmar_0797. DR KEGG; nmr:Nmar_0797; -. DR eggNOG; arCOG04092; Archaea. DR eggNOG; COG0094; LUCA. DR HOGENOM; HOG000231312; -. DR KO; K02931; -. DR OMA; EDTMAWF; -. DR BioCyc; NMAR436308:GI3J-824-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1440.10; -; 1. DR HAMAP; MF_01333_A; Ribosomal_L5_A; 1. DR InterPro; IPR002132; Ribosomal_L5. DR InterPro; IPR022804; Ribosomal_L5_arc. DR InterPro; IPR031309; Ribosomal_L5_C. DR InterPro; IPR022803; Ribosomal_L5_domain. DR InterPro; IPR031310; Ribosomal_L5_N. DR Pfam; PF00281; Ribosomal_L5; 1. DR Pfam; PF00673; Ribosomal_L5_C; 1. DR PIRSF; PIRSF002161; Ribosomal_L5; 1. DR SUPFAM; SSF55282; SSF55282; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding; tRNA-binding. FT CHAIN 1 173 50S ribosomal protein L5. FT /FTId=PRO_0000365646. SQ SEQUENCE 173 AA; 18708 MW; 3B1503253FFA0649 CRC64; MSQTTESPMK KISLEKVVLN MGVGKSGDVI EIASRALEQI SGKKPSARNA KETQRDWGVR KGEPIGVAVT IRGDDAKALL KRLLEAKGNT VNGRAFDNFG NYSFGIREHI DIPGVKYEPS IGILGLGISV TLTRPGYGIR TRSKHKASVG KSHIITSQEA KDYLVKEFGV TVA // ID RNP1_NITMS Reviewed; 88 AA. AC A9A5I7; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE RecName: Full=Ribonuclease P protein component 1 {ECO:0000255|HAMAP-Rule:MF_00754}; DE Short=RNase P component 1 {ECO:0000255|HAMAP-Rule:MF_00754}; DE EC=3.1.26.5 {ECO:0000255|HAMAP-Rule:MF_00754}; DE AltName: Full=Rpp29 {ECO:0000255|HAMAP-Rule:MF_00754}; GN Name=rnp1 {ECO:0000255|HAMAP-Rule:MF_00754}; GN OrderedLocusNames=Nmar_0802; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of ribonuclease P, a protein complex that generates CC mature tRNA molecules by cleaving their 5'-ends. CC {ECO:0000255|HAMAP-Rule:MF_00754}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage of RNA, removing 5'- CC extranucleotides from tRNA precursor. {ECO:0000255|HAMAP- CC Rule:MF_00754}. CC -!- SUBUNIT: Consists of a catalytic RNA component and at least 4-5 CC protein subunits. {ECO:0000255|HAMAP-Rule:MF_00754}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00754}. CC -!- SIMILARITY: Belongs to the eukaryotic/archaeal RNase P protein CC component 1 family. {ECO:0000255|HAMAP-Rule:MF_00754}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12698.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I7; -. DR STRING; 436308.Nmar_0802; -. DR EnsemblBacteria; ABX12698; ABX12698; Nmar_0802. DR KEGG; nmr:Nmar_0802; -. DR eggNOG; arCOG00784; Archaea. DR eggNOG; COG1588; LUCA. DR HOGENOM; HOG000231353; -. DR KO; K03538; -. DR BioCyc; NMAR436308:GI3J-829-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000172; C:ribonuclease MRP complex; IEA:InterPro. DR GO; GO:0030677; C:ribonuclease P complex; IEA:UniProtKB-HAMAP. DR GO; GO:0004526; F:ribonuclease P activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0006379; P:mRNA cleavage; IEA:InterPro. DR GO; GO:0006364; P:rRNA processing; IEA:InterPro. DR GO; GO:0001682; P:tRNA 5'-leader removal; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.210; -; 1. DR HAMAP; MF_00754; RNase_P_1; 1. DR InterPro; IPR002730; RNase_P/MRP_p29. DR InterPro; IPR023538; RNP1. DR InterPro; IPR023534; Rof/RNase_P-like. DR Pfam; PF01868; UPF0086; 1. DR SMART; SM00538; POP4; 1. DR SUPFAM; SSF101744; SSF101744; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Nuclease; KW Reference proteome; tRNA processing. FT CHAIN 1 88 Ribonuclease P protein component 1. FT /FTId=PRO_1000148363. SQ SEQUENCE 88 AA; 9687 MW; 7E301F07E4633906 CRC64; MITADNITSH EFIGLNTEIV QSTNPQVIGL NGRIENETKS MFTINTENGM KSIAKSTSNW KFSIDSNDVI VEGSRIAKRP FDRIGGKA // ID RPOH_NITMS Reviewed; 83 AA. AC A9A458; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 48. DE RecName: Full=DNA-directed RNA polymerase subunit H {ECO:0000255|HAMAP-Rule:MF_00025}; DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00025}; GN Name=rpoH {ECO:0000255|HAMAP-Rule:MF_00025}; GN OrderedLocusNames=Nmar_0346; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription CC of DNA into RNA using the four ribonucleoside triphosphates as CC substrates. {ECO:0000255|HAMAP-Rule:MF_00025}. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). {ECO:0000255|HAMAP-Rule:MF_00025}. CC -!- SIMILARITY: Belongs to the archaeal RpoH/eukaryotic RPB5 RNA CC polymerase subunit family. {ECO:0000255|HAMAP-Rule:MF_00025}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12242.1; -; Genomic_DNA. DR ProteinModelPortal; A9A458; -. DR STRING; 436308.Nmar_0346; -. DR EnsemblBacteria; ABX12242; ABX12242; Nmar_0346. DR KEGG; nmr:Nmar_0346; -. DR eggNOG; arCOG04258; Archaea. DR eggNOG; COG2012; LUCA. DR HOGENOM; HOG000109413; -. DR KO; K03053; -. DR OMA; EHELVPK; -. DR BioCyc; NMAR436308:GI3J-361-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.940.20; -; 1. DR HAMAP; MF_00025; RNApol_RpoH_RPB5; 1. DR InterPro; IPR000783; RNA_pol_subH/Rpb5_C. DR InterPro; IPR020609; RpoH/RPB5. DR Pfam; PF01191; RNA_pol_Rpb5_C; 1. DR ProDom; PD005155; RNA_pol_subH/Rpb5_C; 1. DR SUPFAM; SSF55287; SSF55287; 1. PE 3: Inferred from homology; KW Complete proteome; DNA-directed RNA polymerase; KW Nucleotidyltransferase; Reference proteome; Transcription; KW Transferase. FT CHAIN 1 83 DNA-directed RNA polymerase subunit H. FT /FTId=PRO_1000090210. SQ SEQUENCE 83 AA; 9354 MW; D440291B1B3CAB0D CRC64; MATKKNQILV PDHIYVPKHE IISKTEAEEV LKKYNCKPTE LPLIFVNDPA ILGLGVKPGD MIKITRKSPT AGEGLYYRYV VEV // ID RNZ_NITMS Reviewed; 299 AA. AC A9A3X2; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 56. DE RecName: Full=Ribonuclease Z {ECO:0000255|HAMAP-Rule:MF_01818}; DE Short=RNase Z {ECO:0000255|HAMAP-Rule:MF_01818}; DE EC=3.1.26.11 {ECO:0000255|HAMAP-Rule:MF_01818}; DE AltName: Full=tRNA 3 endonuclease {ECO:0000255|HAMAP-Rule:MF_01818}; DE AltName: Full=tRNase Z {ECO:0000255|HAMAP-Rule:MF_01818}; GN Name=rnz {ECO:0000255|HAMAP-Rule:MF_01818}; GN OrderedLocusNames=Nmar_1776; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Zinc phosphodiesterase, which displays some tRNA 3'- CC processing endonuclease activity. Probably involved in tRNA CC maturation, by removing a 3'-trailer from precursor tRNA. CC {ECO:0000255|HAMAP-Rule:MF_01818}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage of RNA, removing CC extra 3' nucleotides from tRNA precursor, generating 3' termini of CC tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'- CC phosphoryl group is left at the trailer molecule. CC {ECO:0000255|HAMAP-Rule:MF_01818}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01818}; CC Note=Binds 2 Zn(2+) ions. {ECO:0000255|HAMAP-Rule:MF_01818}; CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_01818}. CC -!- SIMILARITY: Belongs to the RNase Z family. {ECO:0000255|HAMAP- CC Rule:MF_01818}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13672.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X2; -. DR STRING; 436308.Nmar_1776; -. DR EnsemblBacteria; ABX13672; ABX13672; Nmar_1776. DR KEGG; nmr:Nmar_1776; -. DR eggNOG; arCOG00501; Archaea. DR eggNOG; COG1234; LUCA. DR HOGENOM; HOG000272419; -. DR KO; K00784; -. DR OMA; SYAFCSD; -. DR BioCyc; NMAR436308:GI3J-1823-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0042781; F:3'-tRNA processing endoribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.60.15.10; -; 1. DR HAMAP; MF_01818; RNase_Z_BN; 1. DR InterPro; IPR001279; Metallo-B-lactamas. DR InterPro; IPR013471; RNase_Z/BN. DR Pfam; PF00753; Lactamase_B; 1. DR Pfam; PF12706; Lactamase_B_2; 1. DR SUPFAM; SSF56281; SSF56281; 1. DR TIGRFAMs; TIGR02651; RNase_Z; 1. PE 3: Inferred from homology; KW Complete proteome; Endonuclease; Hydrolase; Metal-binding; Nuclease; KW Reference proteome; tRNA processing; Zinc. FT CHAIN 1 299 Ribonuclease Z. FT /FTId=PRO_1000187974. FT ACT_SITE 64 64 Proton acceptor. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 60 60 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 62 62 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 64 64 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 65 65 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 137 137 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 207 207 Zinc 1; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 207 207 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. FT METAL 265 265 Zinc 2; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_01818}. SQ SEQUENCE 299 AA; 33758 MW; 85FA72B3C5DF2E1E CRC64; MKLVFLGTSA AQPTENRGLS CICLEREGEV LMFDAGEAAQ ISYMKSGLGW NKKMKIFVTH LHGDHCVGIL GLLQTMSMQN RTESLEIFGP SGIEEFIAAN IKVLNFGLSF PILINTIKDE KIFEDEKFLI RTCKANHSII AFSYLFEEKD KPGRFNVEKA KELGIPEGEL WNKLQNGNEI TVNEKIIKPE QVLGERRPGK KIGISGDTMP TKELEEFFEE CDYLVFDSTF LEAEKQKAQD TCHSTAKQAA TVAKNAKVKN LVLTHFSARY RDEVEHLREA KEIHDSVITA KDLLEIEIK // ID RS10_NITMS Reviewed; 102 AA. AC A9A3J7; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE RecName: Full=30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; GN Name=rps10 {ECO:0000255|HAMAP-Rule:MF_00508}; GN OrderedLocusNames=Nmar_1033; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the binding of tRNA to the ribosomes. CC {ECO:0000255|HAMAP-Rule:MF_00508}. CC -!- SIMILARITY: Belongs to the ribosomal protein S10P family. CC {ECO:0000255|HAMAP-Rule:MF_00508}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12929.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3J7; -. DR STRING; 436308.Nmar_1033; -. DR EnsemblBacteria; ABX12929; ABX12929; Nmar_1033. DR KEGG; nmr:Nmar_1033; -. DR eggNOG; arCOG01758; Archaea. DR eggNOG; COG0051; LUCA. DR HOGENOM; HOG000270244; -. DR KO; K02946; -. DR OMA; YEKWEMR; -. DR BioCyc; NMAR436308:GI3J-1064-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.600; -; 1. DR HAMAP; MF_00508; Ribosomal_S10; 1. DR InterPro; IPR001848; Ribosomal_S10. DR InterPro; IPR027486; Ribosomal_S10_dom. DR InterPro; IPR005729; Ribosomal_S10_euk/arc. DR PANTHER; PTHR11700; PTHR11700; 1. DR Pfam; PF00338; Ribosomal_S10; 1. DR PRINTS; PR00971; RIBOSOMALS10. DR SMART; SM01403; Ribosomal_S10; 1. DR SUPFAM; SSF54999; SSF54999; 1. DR TIGRFAMs; TIGR01046; uS10_euk_arch; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 102 30S ribosomal protein S10. FT /FTId=PRO_1000127157. SQ SEQUENCE 102 AA; 11419 MW; 431FAA4B6655D1C7 CRC64; MTQTARVKLT STSLPKLDGV CGEIMGIGKK TGVKVKGPTP LPVKRLHVAT RKSPCGNGTE TYEKWEMKMH RRIININADD KAIRQLMRLK IPDDVYIELS LT // ID RRP41_NITMS Reviewed; 244 AA. AC A9A5C9; DT 22-SEP-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=Exosome complex component Rrp41 {ECO:0000255|HAMAP-Rule:MF_00591}; DE EC=3.1.13.- {ECO:0000255|HAMAP-Rule:MF_00591}; GN Name=rrp41 {ECO:0000255|HAMAP-Rule:MF_00591}; GN OrderedLocusNames=Nmar_0432; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalytic component of the exosome, which is a complex CC involved in RNA degradation. Has 3'->5' exoribonuclease activity. CC Can also synthesize heteropolymeric RNA-tails. {ECO:0000255|HAMAP- CC Rule:MF_00591}. CC -!- SUBUNIT: Component of the archaeal exosome complex. Forms a CC hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 CC heterodimers. The hexameric ring associates with a trimer of Rrp4 CC and/or Csl4 subunits. {ECO:0000255|HAMAP-Rule:MF_00591}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00591}. CC -!- SIMILARITY: Belongs to the RNase PH family. Rrp41 subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00591}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12328.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C9; -. DR SMR; A9A5C9; 10-239. DR STRING; 436308.Nmar_0432; -. DR EnsemblBacteria; ABX12328; ABX12328; Nmar_0432. DR KEGG; nmr:Nmar_0432; -. DR eggNOG; arCOG01575; Archaea. DR eggNOG; COG0689; LUCA. DR HOGENOM; HOG000229515; -. DR KO; K11600; -. DR OMA; DPMKEED; -. DR BioCyc; NMAR436308:GI3J-450-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW. DR GO; GO:0000175; F:3'-5'-exoribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.70; -; 1. DR HAMAP; MF_00591; Exosome_Rrp41; 1. DR InterPro; IPR001247; ExoRNase_PH_dom1. DR InterPro; IPR015847; ExoRNase_PH_dom2. DR InterPro; IPR027408; PNPase/RNase_PH_dom. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR011807; Rrp41. DR Pfam; PF01138; RNase_PH; 1. DR Pfam; PF03725; RNase_PH_C; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55666; SSF55666; 1. DR TIGRFAMs; TIGR02065; ECX1; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Exonuclease; Exosome; Hydrolase; KW Nuclease; Reference proteome. FT CHAIN 1 244 Exosome complex component Rrp41. FT /FTId=PRO_1000212171. SQ SEQUENCE 244 AA; 26612 MW; F291FA399C8BB0E2 CRC64; MGGREATMVL MDENGKRCDG RTVDEPRRIM IKAGGLKNAD GSSYIEFGDN KILVGVFGPR DVHPKHMSDT DTGILRVRYH MEPFSVGERK NPAPSRREIE ISKVIKEALE PAVMLEKFPR TAVDVFIEVL QADGGTRCAA LTAASVALAD AGIPMRDMVA AIAAGKVADT VILDVNNEED QAGQADMPIG YMPNLEKITL LQLDGVLTPE EYKKCIQVGV DGCKLVYELQ KKALNDKYFG NKGD // ID RRP4_NITMS Reviewed; 226 AA. AC A9A5C8; DT 21-MAR-2012, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE RecName: Full=Exosome complex component Rrp4 {ECO:0000255|HAMAP-Rule:MF_00623}; GN Name=rrp4 {ECO:0000255|HAMAP-Rule:MF_00623}; GN OrderedLocusNames=Nmar_0431; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Non-catalytic component of the exosome, which is a CC complex involved in RNA degradation. Increases the RNA binding and CC the efficiency of RNA degradation. Confers strong poly(A) CC specificity to the exosome. {ECO:0000255|HAMAP-Rule:MF_00623}. CC -!- SUBUNIT: Component of the archaeal exosome complex. Forms a trimer CC of Rrp4 and/or Csl4 subunits. The trimer associates with a CC hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 CC heterodimers. {ECO:0000255|HAMAP-Rule:MF_00623}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00623}. CC -!- SIMILARITY: Belongs to the RRP4 family. {ECO:0000255|HAMAP- CC Rule:MF_00623}. CC -!- SIMILARITY: Contains 1 KH domain. {ECO:0000255|HAMAP- CC Rule:MF_00623}. CC -!- SIMILARITY: Contains 1 S1 motif domain. {ECO:0000255|HAMAP- CC Rule:MF_00623}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12327.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C8; -. DR STRING; 436308.Nmar_0431; -. DR EnsemblBacteria; ABX12327; ABX12327; Nmar_0431. DR KEGG; nmr:Nmar_0431; -. DR eggNOG; arCOG00678; Archaea. DR eggNOG; COG1097; LUCA. DR HOGENOM; HOG000229527; -. DR KO; K03679; -. DR OMA; GPYIPEV; -. DR BioCyc; NMAR436308:GI3J-449-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW. DR GO; GO:0008143; F:poly(A) binding; IEA:InterPro. DR GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1370.10; -; 1. DR HAMAP; MF_00623; Exosome_Rrp4; 1. DR InterPro; IPR026699; Exosome_RNA_bind1/RRP40/RRP4. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR004088; KH_dom_type_1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR023474; Rrp4. DR InterPro; IPR022967; S1_dom. DR InterPro; IPR003029; S1_domain. DR PANTHER; PTHR21321; PTHR21321; 1. DR Pfam; PF00013; KH_1; 1. DR SMART; SM00322; KH; 1. DR SMART; SM00316; S1; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF54791; SSF54791; 1. DR PROSITE; PS50084; KH_TYPE_1; 1. DR PROSITE; PS50126; S1; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Exosome; Reference proteome; KW RNA-binding. FT CHAIN 1 226 Exosome complex component Rrp4. FT /FTId=PRO_0000416234. FT DOMAIN 61 135 S1 motif. {ECO:0000255|HAMAP- FT Rule:MF_00623}. FT DOMAIN 141 200 KH. {ECO:0000255|HAMAP-Rule:MF_00623}. SQ SEQUENCE 226 AA; 24669 MW; 91D1EB0812F0C54A CRC64; MADKRKYVIP GDVVTTGPFR PEQNTVLEGN KIISTTIGIS EIYDDSVRVI PLTGKYIPKI NDLVIGKVNS HTSLSWELDI NSCYVGFLPA QDVFGRDFSA HADELATKLR TGDLVAARIA NFDRTRDPLV SISDRDLGKI DSGVLMEISP SKVPRLIGKK GSMIQMIEEA TDAAVTIGQN GWVVVSCESP EGLLKAKKAI QMVNEQAHVA NLTDQVKEML DKKGES // ID RS15_NITMS Reviewed; 149 AA. AC A9A4V0; DT 25-NOV-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE RecName: Full=30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; GN Name=rps15 {ECO:0000255|HAMAP-Rule:MF_01343}; GN OrderedLocusNames=Nmar_1508; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01343}. CC -!- SIMILARITY: Belongs to the ribosomal protein S15P family. CC {ECO:0000255|HAMAP-Rule:MF_01343}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13404.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1508; -. DR EnsemblBacteria; ABX13404; ABX13404; Nmar_1508. DR KEGG; nmr:Nmar_1508; -. DR eggNOG; arCOG04185; Archaea. DR eggNOG; COG0184; LUCA. DR HOGENOM; HOG000180723; -. DR KO; K02956; -. DR OMA; GWVYKPE; -. DR BioCyc; NMAR436308:GI3J-1550-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01343_A; Ribosomal_S15_A; 1. DR InterPro; IPR012606; Ribosomal_S13/S15_N. DR InterPro; IPR000589; Ribosomal_S15. DR InterPro; IPR023029; Ribosomal_S15P. DR InterPro; IPR009068; S15_NS1_RNA-bd. DR Pfam; PF08069; Ribosomal_S13_N; 1. DR Pfam; PF00312; Ribosomal_S15; 1. DR SMART; SM01386; Ribosomal_S13_N; 1. DR SMART; SM01387; Ribosomal_S15; 1. DR SUPFAM; SSF47060; SSF47060; 1. DR PROSITE; PS00362; RIBOSOMAL_S15; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 149 30S ribosomal protein S15. FT /FTId=PRO_0000354229. SQ SEQUENCE 149 AA; 17100 MW; 943D2993B1908636 CRC64; MGRMHTHRHG KSHSIRPATL RAPSWITQSP AEIEELVIKY SKDGLTPSQI GIKLRDQHSI PLIKPITKKT IGEILEENDL KAEMPEDLEN IVKKAVGLQR HLKENKGDRR NVRSLELIEA KVHRLSVYYK KIGRIPATWK YKSVVAQLE // ID RS17_NITMS Reviewed; 107 AA. AC A9A5I6; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=30S ribosomal protein S17P {ECO:0000255|HAMAP-Rule:MF_01345}; GN Name=rps17p {ECO:0000255|HAMAP-Rule:MF_01345}; GN OrderedLocusNames=Nmar_0801; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC specifically to the 5'-end of 16S ribosomal RNA. CC {ECO:0000255|HAMAP-Rule:MF_01345}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01345}. CC -!- SIMILARITY: Belongs to the ribosomal protein S17P family. CC {ECO:0000255|HAMAP-Rule:MF_01345}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12697.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I6; -. DR STRING; 436308.Nmar_0801; -. DR EnsemblBacteria; ABX12697; ABX12697; Nmar_0801. DR KEGG; nmr:Nmar_0801; -. DR eggNOG; arCOG04096; Archaea. DR eggNOG; COG0186; LUCA. DR HOGENOM; HOG000231341; -. DR KO; K02961; -. DR OMA; CINAKEG; -. DR BioCyc; NMAR436308:GI3J-828-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_01345_A; Ribosomal_S17_A; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR000266; Ribosomal_S17/S11. DR InterPro; IPR028333; Ribosomal_S17_arc-typ. DR InterPro; IPR019978; Ribosomal_S17_archaeal. DR PANTHER; PTHR10744; PTHR10744; 1. DR Pfam; PF00366; Ribosomal_S17; 1. DR PRINTS; PR00973; RIBOSOMALS17. DR ProDom; PD001295; Ribosomal_S17; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR03630; uS17_arch; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 107 30S ribosomal protein S17P. FT /FTId=PRO_1000143277. SQ SEQUENCE 107 AA; 11909 MW; 3BB1EEEAFA6E33C4 CRC64; MTRNIGLKVK EPKRECEDKN CPFHGELAIR GKLFDGKVTG SKAKQTITLQ KDAPVYFNKF KRYARGKSSI HAHVPGCIDV ESGDNVLTAE CRPISKSVSY VVVEVRS // ID RS19_NITMS Reviewed; 131 AA. AC A9A5J1; DT 25-NOV-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE RecName: Full=30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; GN Name=rps19 {ECO:0000255|HAMAP-Rule:MF_00531}; GN OrderedLocusNames=Nmar_0806; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Protein S19 forms a complex with S13 that binds strongly CC to the 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00531}. CC -!- SIMILARITY: Belongs to the ribosomal protein S19P family. CC {ECO:0000255|HAMAP-Rule:MF_00531}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12702.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5J1; -. DR STRING; 436308.Nmar_0806; -. DR EnsemblBacteria; ABX12702; ABX12702; Nmar_0806. DR KEGG; nmr:Nmar_0806; -. DR eggNOG; arCOG04099; Archaea. DR eggNOG; COG0185; LUCA. DR HOGENOM; HOG000111561; -. DR KO; K02965; -. DR OMA; IRTEMIG; -. DR BioCyc; NMAR436308:GI3J-833-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.860.10; -; 1. DR HAMAP; MF_00531; Ribosomal_S19; 1. DR InterPro; IPR002222; Ribosomal_S19. DR InterPro; IPR020934; Ribosomal_S19_CS. DR InterPro; IPR023575; Ribosomal_S19_SF. DR InterPro; IPR005713; Ribosomal_S19A/S15e. DR PANTHER; PTHR11880; PTHR11880; 1. DR Pfam; PF00203; Ribosomal_S19; 1. DR PIRSF; PIRSF002144; Ribosomal_S19; 1. DR PRINTS; PR00975; RIBOSOMALS19. DR SUPFAM; SSF54570; SSF54570; 1. DR TIGRFAMs; TIGR01025; uS19_arch; 1. DR PROSITE; PS00323; RIBOSOMAL_S19; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 131 30S ribosomal protein S19. FT /FTId=PRO_0000354322. SQ SEQUENCE 131 AA; 14887 MW; FB26041048E28DD8 CRC64; MVKEFAYRGI PKEELDNMSL EKLFQLFNAR QRRSLTRGIT DGKRKLIEEI KAAKAGKLKN PIKTHVRDLI ILPYMVDVTV NVFSGKEFRP VTIRTEMIGH YLGEYVITNR KVSHGAPGVG ASRSSLYVPL K // ID RS27A_NITMS Reviewed; 57 AA. AC A9A217; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE RecName: Full=30S ribosomal protein S27ae {ECO:0000255|HAMAP-Rule:MF_00777}; GN Name=rps27ae {ECO:0000255|HAMAP-Rule:MF_00777}; GN OrderedLocusNames=Nmar_0534; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00777}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00777}; CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_00777}. CC -!- SIMILARITY: Belongs to the ribosomal protein S27Ae family. CC {ECO:0000255|HAMAP-Rule:MF_00777}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12430.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0534; -. DR EnsemblBacteria; ABX12430; ABX12430; Nmar_0534. DR KEGG; nmr:Nmar_0534; -. DR eggNOG; arCOG04183; Archaea. DR eggNOG; COG1998; LUCA. DR HOGENOM; HOG000223075; -. DR KO; K02977; -. DR OMA; MADHKDR; -. DR BioCyc; NMAR436308:GI3J-556-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00777; Ribosomal_S27ae; 1. DR InterPro; IPR002906; Ribosomal_S27a. DR InterPro; IPR022845; Ribosomal_S27ae. DR InterPro; IPR011332; Ribosomal_zn-bd. DR Pfam; PF01599; Ribosomal_S27; 1. DR SMART; SM01402; Ribosomal_S27; 1. DR SUPFAM; SSF57829; SSF57829; 1. PE 3: Inferred from homology; KW Complete proteome; Metal-binding; Reference proteome; KW Ribonucleoprotein; Ribosomal protein; Zinc; Zinc-finger. FT CHAIN 1 57 30S ribosomal protein S27ae. FT /FTId=PRO_1000194304. FT ZN_FING 29 50 C4-type. {ECO:0000255|HAMAP- FT Rule:MF_00777}. FT METAL 29 29 Zinc. {ECO:0000255|HAMAP-Rule:MF_00777}. FT METAL 32 32 Zinc. {ECO:0000255|HAMAP-Rule:MF_00777}. FT METAL 47 47 Zinc. {ECO:0000255|HAMAP-Rule:MF_00777}. FT METAL 50 50 Zinc. {ECO:0000255|HAMAP-Rule:MF_00777}. SQ SEQUENCE 57 AA; 6324 MW; 2D250092C23DE603 CRC64; MAGKKGSSPN VYAYFKVDGD KVSRIKKVCS RCGKGTYMSE HKDRNTCGKC GLTEFKQ // ID RS2_NITMS Reviewed; 207 AA. AC A9A428; DT 14-OCT-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 55. DE RecName: Full=30S ribosomal protein S2 {ECO:0000255|HAMAP-Rule:MF_00291}; GN Name=rps2 {ECO:0000255|HAMAP-Rule:MF_00291}; GN OrderedLocusNames=Nmar_0316; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S2P family. CC {ECO:0000255|HAMAP-Rule:MF_00291}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12212.1; -; Genomic_DNA. DR ProteinModelPortal; A9A428; -. DR STRING; 436308.Nmar_0316; -. DR EnsemblBacteria; ABX12212; ABX12212; Nmar_0316. DR KEGG; nmr:Nmar_0316; -. DR eggNOG; arCOG04245; Archaea. DR eggNOG; COG0052; LUCA. DR HOGENOM; HOG000232072; -. DR KO; K02967; -. DR OMA; LDYASEW; -. DR BioCyc; NMAR436308:GI3J-330-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00291_A; Ribosomal_S2_A; 1. DR InterPro; IPR001865; Ribosomal_S2. DR InterPro; IPR023454; Ribosomal_S2_arc. DR InterPro; IPR018130; Ribosomal_S2_CS. DR InterPro; IPR005707; Ribosomal_S2_euk/arc. DR InterPro; IPR023591; Ribosomal_S2_flav_dom. DR PANTHER; PTHR11489; PTHR11489; 1. DR Pfam; PF00318; Ribosomal_S2; 2. DR PRINTS; PR00395; RIBOSOMALS2. DR SUPFAM; SSF52313; SSF52313; 1. DR TIGRFAMs; TIGR01012; uS2_euk_arch; 1. DR PROSITE; PS00963; RIBOSOMAL_S2_2; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 207 30S ribosomal protein S2. FT /FTId=PRO_0000352076. SQ SEQUENCE 207 AA; 23145 MW; 0EA65E7395359CF4 CRC64; MSQQAETTDI KKKILSTGIR VGTQVKTKFM RPFITKASPE GLYMLDLDIT LDKIKTAAKF INRLGVENLI VCSGRQYAET PIEKFCETLG SKKLLGRFMP GTLTNPSLPY YIEPKLVLIS DPQVDEQAIT EATNAGIPVI GIANTDNITS NLDVIIPANN RGRKALATVY WLLVRQILIE KGELKEEDPM NIEIDDFETK ITEEEIE // ID RS8_NITMS Reviewed; 130 AA. AC A9A5I0; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; GN Name=rps8 {ECO:0000255|HAMAP-Rule:MF_01302}; GN OrderedLocusNames=Nmar_0795; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly to 16S rRNA central domain where it helps coordinate CC assembly of the platform of the 30S subunit. {ECO:0000255|HAMAP- CC Rule:MF_01302}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000255|HAMAP- CC Rule:MF_01302}. CC -!- SIMILARITY: Belongs to the ribosomal protein S8P family. CC {ECO:0000255|HAMAP-Rule:MF_01302}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12691.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I0; -. DR STRING; 436308.Nmar_0795; -. DR EnsemblBacteria; ABX12691; ABX12691; Nmar_0795. DR KEGG; nmr:Nmar_0795; -. DR eggNOG; arCOG04091; Archaea. DR eggNOG; COG0096; LUCA. DR HOGENOM; HOG000204097; -. DR KO; K02994; -. DR OMA; SHITNSE; -. DR BioCyc; NMAR436308:GI3J-822-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01302_A; Ribosomal_S8_A; 1. DR InterPro; IPR000630; Ribosomal_S8. DR PANTHER; PTHR11758; PTHR11758; 1. DR Pfam; PF00410; Ribosomal_S8; 1. DR SUPFAM; SSF56047; SSF56047; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 130 30S ribosomal protein S8. FT /FTId=PRO_1000140585. SQ SEQUENCE 130 AA; 14700 MW; 36567483BF5A2457 CRC64; MPATNILANL FVTLYNNETR RKGECTILPT SKLGIEVLKT LQKDGYIGEF EHIDDKRGGK FKIKLLAKIT KCGAISPRFK VKTDEFNNWE QQYLPAYDRG MLLVTTNQGV MSHHEATQKG IGGFLIGYVY // ID RS6E_NITMS Reviewed; 137 AA. AC A9A110; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE RecName: Full=30S ribosomal protein S6e {ECO:0000255|HAMAP-Rule:MF_00512}; GN Name=rps6e {ECO:0000255|HAMAP-Rule:MF_00512}; GN OrderedLocusNames=Nmar_0071; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S6e family. CC {ECO:0000255|HAMAP-Rule:MF_00512}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11971.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0071; -. DR EnsemblBacteria; ABX11971; ABX11971; Nmar_0071. DR KEGG; nmr:Nmar_0071; -. DR eggNOG; arCOG01946; Archaea. DR eggNOG; COG2125; LUCA. DR HOGENOM; HOG000226356; -. DR KO; K02991; -. DR OMA; EQDANRF; -. DR BioCyc; NMAR436308:GI3J-72-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00512; Ribosomal_S6e; 1. DR InterPro; IPR001377; Ribosomal_S6e. DR InterPro; IPR020924; Ribosomal_S6e_arc. DR InterPro; IPR018282; Ribosomal_S6e_CS. DR PANTHER; PTHR11502; PTHR11502; 1. DR Pfam; PF01092; Ribosomal_S6e; 1. DR SMART; SM01405; Ribosomal_S6e; 1. DR PROSITE; PS00578; RIBOSOMAL_S6E; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein. FT CHAIN 1 137 30S ribosomal protein S6e. FT /FTId=PRO_1000146105. SQ SEQUENCE 137 AA; 14809 MW; 7359ADFB9D41492E CRC64; MANFKITISD TKGKSMSKEL KDSDANPLLG LELGQETDAS VVGLNGKLKL TGGSDKSGVP MRNDIHGAAR KYVLLSKGVG LQDAEKGQRV RKLMRGNTVS EEIYQINCKF DGELPVEEAP AEDAPESAEE KSEDKKE // ID RS4_NITMS Reviewed; 201 AA. AC A9A436; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 55. DE RecName: Full=30S ribosomal protein S4 {ECO:0000255|HAMAP-Rule:MF_01306}; GN Name=rps4 {ECO:0000255|HAMAP-Rule:MF_01306}; GN OrderedLocusNames=Nmar_0324; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly to 16S rRNA where it nucleates assembly of the body of CC the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- FUNCTION: With S5 and S12 plays an important role in translational CC accuracy. {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts protein S5. CC The interaction surface between S4 and S5 is involved in control CC of translational fidelity. {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- SIMILARITY: Belongs to the ribosomal protein S4P family. CC {ECO:0000255|HAMAP-Rule:MF_01306}. CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. {ECO:0000255|HAMAP- CC Rule:MF_01306}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12220.1; -; Genomic_DNA. DR ProteinModelPortal; A9A436; -. DR STRING; 436308.Nmar_0324; -. DR EnsemblBacteria; ABX12220; ABX12220; Nmar_0324. DR KEGG; nmr:Nmar_0324; -. DR eggNOG; arCOG04239; Archaea. DR eggNOG; COG0522; LUCA. DR HOGENOM; HOG000194524; -. DR KO; K02986; -. DR OMA; KEDEMHI; -. DR BioCyc; NMAR436308:GI3J-339-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.10.290.10; -; 1. DR HAMAP; MF_01306_A; Ribosomal_S4_A; 1. DR InterPro; IPR022801; Ribosomal_S4/S9. DR InterPro; IPR005710; Ribosomal_S4/S9_euk/arc. DR InterPro; IPR001912; Ribosomal_S4/S9_N. DR InterPro; IPR022802; Ribosomal_S4_arc. DR InterPro; IPR002942; S4_RNA-bd. DR PANTHER; PTHR11831; PTHR11831; 1. DR Pfam; PF01479; S4; 1. DR SMART; SM01390; Ribosomal_S4; 1. DR SMART; SM00363; S4; 1. DR TIGRFAMs; TIGR01018; uS4_arch; 1. DR PROSITE; PS50889; S4; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome; Ribonucleoprotein; KW Ribosomal protein; RNA-binding; rRNA-binding. FT CHAIN 1 201 30S ribosomal protein S4. FT /FTId=PRO_1000165417. FT DOMAIN 103 167 S4 RNA-binding. {ECO:0000255|HAMAP- FT Rule:MF_01306}. SQ SEQUENCE 201 AA; 22905 MW; D94DAB41501EF7ED CRC64; MGDPKYPRRV WRKPKRPLNY ELKMEELKTL GTFGLRTKRE LWKAHTELSR VRHQARSLLA LRQEVRAEKE PILMKSLARI GLVSSDATLD DVLNLTANDL LSRRLQTIVT KKLGFKTPYQ ARQAVIHGHI MIGERKVDIP SYTVTVEEEN SIHFAPESKI PQVLEKTKSE APAEETVEAP AEETVEAPAE EKKEESPSTE S // ID SAT_NITMS Reviewed; 380 AA. AC A9A541; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=Sulfate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00066}; DE EC=2.7.7.4 {ECO:0000255|HAMAP-Rule:MF_00066}; DE AltName: Full=ATP-sulfurylase {ECO:0000255|HAMAP-Rule:MF_00066}; DE AltName: Full=Sulfate adenylate transferase {ECO:0000255|HAMAP-Rule:MF_00066}; DE Short=SAT {ECO:0000255|HAMAP-Rule:MF_00066}; GN Name=sat {ECO:0000255|HAMAP-Rule:MF_00066}; GN OrderedLocusNames=Nmar_0050; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + sulfate = diphosphate + adenylyl CC sulfate. {ECO:0000255|HAMAP-Rule:MF_00066}. CC -!- PATHWAY: Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite CC from sulfate: step 1/3. {ECO:0000255|HAMAP-Rule:MF_00066}. CC -!- SIMILARITY: Belongs to the sulfate adenylyltransferase family. CC {ECO:0000255|HAMAP-Rule:MF_00066}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11950.1; -; Genomic_DNA. DR ProteinModelPortal; A9A541; -. DR STRING; 436308.Nmar_0050; -. DR EnsemblBacteria; ABX11950; ABX11950; Nmar_0050. DR KEGG; nmr:Nmar_0050; -. DR eggNOG; arCOG04191; Archaea. DR eggNOG; COG2046; LUCA. DR HOGENOM; HOG000069044; -. DR KO; K00958; -. DR OMA; LQHMIIR; -. DR BioCyc; NMAR436308:GI3J-50-MONOMER; -. DR UniPathway; UPA00140; UER00204. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004781; F:sulfate adenylyltransferase (ATP) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070814; P:hydrogen sulfide biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0000103; P:sulfate assimilation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00066; Sulf_adenylyltr; 1. DR InterPro; IPR025980; ATP-Sase_PUA-like_dom. DR InterPro; IPR015947; PUA-like_domain. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR020792; SO4_adenylyltransferase_pro. DR InterPro; IPR024951; Sulfurylase_cat_dom. DR InterPro; IPR002650; Sulphate_adenylyltransferase. DR Pfam; PF01747; ATP-sulfurylase; 1. DR Pfam; PF14306; PUA_2; 1. DR SUPFAM; SSF88697; SSF88697; 1. DR TIGRFAMs; TIGR00339; sopT; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Nucleotide-binding; KW Nucleotidyltransferase; Reference proteome; Transferase. FT CHAIN 1 380 Sulfate adenylyltransferase. FT /FTId=PRO_1000092258. SQ SEQUENCE 380 AA; 42482 MW; 9616A3E8C11CF807 CRC64; MSENDSIKPH GGVLVNRITN VDPSGLFSIT ISEDLANDVE NIADGIFSPL EGFLGQQDFE SVISRGRLAN DLAWTIPIVL DVDEETANKM KDAVDVLLQN PDGIGIAVLH VEEVYTFDKE KTAKGVYGTN DTAHPGVAYT MSMKDFLVGG KIDFIQRPND TEIRKNRLTP KQTREAFAQA GWKTICAFQT RNPPHVAHEM LQKTSITTRD GVFVNPVIGK KKSGDFVDEV IVKCYETMIE HYYAENRCKL GTLHTQMKYA GPKEAIHHAI MRQNYGCTHI IIGRDHAGVG KFYDPMAAQE IFSDYPELDI APVFFPAFFY CRKCLTYTTP KACPHDNDDK EQISGTALRE MIQNGQAPSQ FILRPEVAQV ILDHPKPFVD // ID SUI1_NITMS Reviewed; 102 AA. AC A9A389; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE RecName: Full=Protein translation factor SUI1 homolog {ECO:0000255|HAMAP-Rule:MF_00604}; GN OrderedLocusNames=Nmar_0622; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the SUI1 family. {ECO:0000255|HAMAP- CC Rule:MF_00604}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12518.1; -; Genomic_DNA. DR ProteinModelPortal; A9A389; -. DR STRING; 436308.Nmar_0622; -. DR EnsemblBacteria; ABX12518; ABX12518; Nmar_0622. DR KEGG; nmr:Nmar_0622; -. DR eggNOG; arCOG04223; Archaea. DR eggNOG; COG0023; LUCA. DR HOGENOM; HOG000279815; -. DR KO; K03113; -. DR OMA; LCVCEEV; -. DR BioCyc; NMAR436308:GI3J-646-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003743; F:translation initiation factor activity; IEA:InterPro. DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.780.10; -; 1. DR HAMAP; MF_00604; SUI1; 1. DR InterPro; IPR022851; SUI1_arc. DR InterPro; IPR005872; SUI1_arc_bac. DR InterPro; IPR001950; TIF_SUI1. DR Pfam; PF01253; SUI1; 1. DR PIRSF; PIRSF037511; Transl_init_SUI1_pro; 1. DR SUPFAM; SSF55159; SSF55159; 1. DR PROSITE; PS50296; SUI1; 1. PE 3: Inferred from homology; KW Complete proteome; Protein biosynthesis; Reference proteome; KW Translation regulation. FT CHAIN 1 102 Protein translation factor SUI1 homolog. FT /FTId=PRO_1000130116. SQ SEQUENCE 102 AA; 11278 MW; 2B5AA3988D9260F2 CRC64; MAVICNTCGL PEDLCACGEL AKDSTKIIIR LETRRFKKKG TMIEGLDPKL NNLETVAKEL KSKYACGGTA KEGYIFLQGD HRDTIKDTLT DLGFAEESIE LH // ID SYE_NITMS Reviewed; 569 AA. AC A9A423; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 53. DE RecName: Full=Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; DE EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022}; DE AltName: Full=Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; DE Short=GluRS {ECO:0000255|HAMAP-Rule:MF_00022}; GN Name=gltX {ECO:0000255|HAMAP-Rule:MF_00022}; GN OrderedLocusNames=Nmar_0311; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the attachment of glutamate to tRNA(Glu) in a CC two-step reaction: glutamate is first activated by ATP to form CC Glu-AMP and then transferred to the acceptor end of tRNA(Glu). CC {ECO:0000255|HAMAP-Rule:MF_00022}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamate + tRNA(Glu) = AMP + CC diphosphate + L-glutamyl-tRNA(Glu). {ECO:0000255|HAMAP- CC Rule:MF_00022}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00022}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000255|HAMAP-Rule:MF_00022}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12207.1; -; Genomic_DNA. DR ProteinModelPortal; A9A423; -. DR STRING; 436308.Nmar_0311; -. DR EnsemblBacteria; ABX12207; ABX12207; Nmar_0311. DR KEGG; nmr:Nmar_0311; -. DR eggNOG; arCOG04302; Archaea. DR eggNOG; COG0008; LUCA. DR HOGENOM; HOG000073585; -. DR KO; K01885; -. DR OMA; MRFAPNP; -. DR BioCyc; NMAR436308:GI3J-325-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004818; F:glutamate-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006424; P:glutamyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1160.10; -; 1. DR Gene3D; 2.40.240.10; -; 2. DR Gene3D; 3.40.50.620; -; 2. DR HAMAP; MF_00022_A; Glu_tRNA_synth_A; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR004526; Glu-tRNA-synth_arc/euk. DR InterPro; IPR000924; Glu/Gln-tRNA-synth. DR InterPro; IPR020061; Glu/Gln-tRNA-synth_Ib_a-bdl. DR InterPro; IPR020058; Glu/Gln-tRNA-synth_Ib_cat-dom. DR InterPro; IPR020059; Glu/Gln-tRNA-synth_Ib_codon-bd. DR InterPro; IPR022888; Glu_tRNA_synth_arc. DR InterPro; IPR020056; Rbsml_L25/Gln-tRNA_synth_b-brl. DR InterPro; IPR011035; Ribosomal_L25/Gln-tRNA_synth. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00749; tRNA-synt_1c; 1. DR Pfam; PF03950; tRNA-synt_1c_C; 1. DR PRINTS; PR00987; TRNASYNTHGLU. DR SUPFAM; SSF50715; SSF50715; 1. DR TIGRFAMs; TIGR00463; gltX_arch; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 569 Glutamate--tRNA ligase. FT /FTId=PRO_0000367804. FT MOTIF 107 117 "HIGH" region. SQ SEQUENCE 569 AA; 65521 MW; E323770539C1B725 CRC64; MDEEIKHEIR KMALQNAFEH GGQTQDKIIL GKILGTKPEF RTKVKEISGE ISEIVASVNQ LSPEEQQKEM EEKFPEALAP KEKIEEREGL PELKDAIQGK VVTRFPPEPN GYPHIGHAKA AIINSEYAKM YGGKFILRMD DTNPEAERME YHAAIKVGLE WLGIEFDQVK STSDDMEVFY EKGIELINSG KAYVCTCKRE DISQNRRERK ACKCSMEDVG KNNKNWEKMQ NKFKPGEAIV RFRGDMKADN AVMRDPVLLR IIDEKHYTVG DKYRIWPSYD FAVAIEDSID GVTHAFRSKE FELRKELIDA ILDALGMRKP QQGFFSRLEF KGMPISKRII KPLIEEGKVS WYDDPRLPTL EALRRRGIKP EAIRKFIMSL GLTKANTLAP FDALEAFNRK FVDADSMRLF MVKNAKKLKI KNLQSTIVEV PNHPINDLGK RKIEITEDFY ISGDDSEAIK EQSTIRLLGL GNVKITKIGN ELEGEFERDG DSSNILKIQW VPQKTAHEIK MIIPKILFND EEFNEDSLEE LDVYTEPQYL QLKEGEEIQF VRFGYCRKDS QNQAIFTHK // ID SYA_NITMS Reviewed; 889 AA. AC A9A565; DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; DE EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036}; DE AltName: Full=Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; DE Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036}; GN Name=alaS {ECO:0000255|HAMAP-Rule:MF_00036}; GN OrderedLocusNames=Nmar_0368; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a CC two-step reaction: alanine is first activated by ATP to form Ala- CC AMP and then transferred to the acceptor end of tRNA(Ala). Also CC edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its CC editing domain. {ECO:0000255|HAMAP-Rule:MF_00036}. CC -!- CATALYTIC ACTIVITY: ATP + L-alanine + tRNA(Ala) = AMP + CC diphosphate + L-alanyl-tRNA(Ala). {ECO:0000255|HAMAP- CC Rule:MF_00036}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00036}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00036}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00036}. CC -!- DOMAIN: Consists of three domains; the N-terminal catalytic CC domain, the editing domain and the C-terminal C-Ala domain. The CC editing domain removes incorrectly charged amino acids, while the CC C-Ala domain, along with tRNA(Ala), serves as a bridge to CC cooperatively bring together the editing and aminoacylation CC centers thus stimulating deacylation of misacylated tRNAs. CC {ECO:0000255|HAMAP-Rule:MF_00036}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000255|HAMAP-Rule:MF_00036}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12264.1; -; Genomic_DNA. DR ProteinModelPortal; A9A565; -. DR STRING; 436308.Nmar_0368; -. DR EnsemblBacteria; ABX12264; ABX12264; Nmar_0368. DR KEGG; nmr:Nmar_0368; -. DR eggNOG; arCOG01255; Archaea. DR eggNOG; COG0013; LUCA. DR HOGENOM; HOG000015496; -. DR KO; K01872; -. DR OMA; ERFAWIT; -. DR BioCyc; NMAR436308:GI3J-384-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004813; F:alanine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006419; P:alanyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00036_A; Ala_tRNA_synth_A; 1. DR InterPro; IPR002318; Ala-tRNA-lgiase_IIc. DR InterPro; IPR018162; Ala-tRNA-ligase_IIc_anticod-bd. DR InterPro; IPR018165; Ala-tRNA-synth_IIc_core. DR InterPro; IPR018164; Ala-tRNA-synth_IIc_N. DR InterPro; IPR022429; Ala-tRNA_lgiase_arc. DR InterPro; IPR003156; DHHA1_dom. DR InterPro; IPR018163; Thr/Ala-tRNA-synth_IIc_edit. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR012947; tRNA_SAD. DR Pfam; PF02272; DHHA1; 1. DR Pfam; PF01411; tRNA-synt_2c; 1. DR Pfam; PF07973; tRNA_SAD; 1. DR PRINTS; PR00980; TRNASYNTHALA. DR SMART; SM00863; tRNA_SAD; 1. DR SUPFAM; SSF101353; SSF101353; 1. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF55186; SSF55186; 1. DR TIGRFAMs; TIGR03683; A-tRNA_syn_arch; 1. DR TIGRFAMs; TIGR00344; alaS; 1. DR PROSITE; PS50860; AA_TRNA_LIGASE_II_ALA; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; KW Reference proteome; RNA-binding; tRNA-binding; Zinc. FT CHAIN 1 889 Alanine--tRNA ligase. FT /FTId=PRO_0000347889. FT METAL 587 587 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. FT METAL 591 591 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. FT METAL 691 691 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. FT METAL 695 695 Zinc. {ECO:0000255|HAMAP-Rule:MF_00036}. SQ SEQUENCE 889 AA; 99972 MW; EF81BE093D8F32EE CRC64; MDKKEILKEF SADPDKYYNV KLFQEQGFIR KSCAKCGRFF WTLNADRDLC PDDGLDTYSF IGEPPTSKRF DYTQSWKQVE EFFVKNNHTS VSRYPVVCRW RDDLYFTIAS VVDFQRVMGS KVVFEFPANP LVVPQTCLRF KDLENVGVTG RHFSSFCMIG QHSVPDLGGY WKDECVDLDY RLLTEQFGIN KDEVVFVEDV WAGGGSFGPS LEYFVQGLEL GNAVFTEFQG ELGKHTTLDQ RVIDMGAGLE RFAWITMGTP TAYDCCFGPI NEKLFGTIGI DSDSEILRKY FTEIAKEIDH YDDLNQVRRL AVKNAGITDE QMQKMITPLE GMYLIADHLR TLIFAITDGA LPSNVGGGYN LRMMLRRINA TISKLNLKLN IDDLIDLHVD YLKDTYPELD EKRDDVKSIL KLESARYEES KVHMKKKADK IKEKGAPSVD ELITYYESDG ITPEYLKEVD AISEIPSSFY SKLSDLHQSD KKKAIAELPL EGLPETETLF YQDDPMEFSA KVLKVIDDMI VLDRTSFYAR GGGQEPDFGS IAGFKVINVD KHADIIVHQL EGGVPKEGET VSCKVDETRR SNITKNHTST HIINASSRKV LGSWIWQHSA FKDDDHARLD ITHHSSLSND EVQKIEDEAN DMIKKNYPVK INYYDRGTAE QKYGFRIYQG GVVPVKSVRI VSIEDKDIEA CGGTHVKKTG DIELIKITKT KRIQDGVVRL EFVSGPNAFE YEKQQEQESK RKAEEAVAKE QLEKQREENK SKAREKIPVL LEKVLAGEDV ESDGINTKGK LCFTASSDYD DYFHQNFGKK LVGKDSTAAF CGVFEAGPTI RVMVFSGEQS GVNAGEIAKK IASILGGSGG GDAKFAQGGG KDTSKKDEAI SKAKSMILG // ID TAL_NITMS Reviewed; 222 AA. AC A9A413; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 60. DE RecName: Full=Probable transaldolase {ECO:0000255|HAMAP-Rule:MF_00494}; DE EC=2.2.1.2 {ECO:0000255|HAMAP-Rule:MF_00494}; GN Name=tal {ECO:0000255|HAMAP-Rule:MF_00494}; GN OrderedLocusNames=Nmar_0301; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Transaldolase is important for the balance of CC metabolites in the pentose-phosphate pathway. {ECO:0000255|HAMAP- CC Rule:MF_00494}. CC -!- CATALYTIC ACTIVITY: Sedoheptulose 7-phosphate + D-glyceraldehyde CC 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate. CC {ECO:0000255|HAMAP-Rule:MF_00494}. CC -!- PATHWAY: Carbohydrate degradation; pentose phosphate pathway; D- CC glyceraldehyde 3-phosphate and beta-D-fructose 6-phosphate from D- CC ribose 5-phosphate and D-xylulose 5-phosphate (non-oxidative CC stage): step 2/3. {ECO:0000255|HAMAP-Rule:MF_00494}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00494}. CC -!- SIMILARITY: Belongs to the transaldolase family. Type 3B CC subfamily. {ECO:0000255|HAMAP-Rule:MF_00494}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12197.1; -; Genomic_DNA. DR ProteinModelPortal; A9A413; -. DR SMR; A9A413; 1-214. DR STRING; 436308.Nmar_0301; -. DR EnsemblBacteria; ABX12197; ABX12197; Nmar_0301. DR KEGG; nmr:Nmar_0301; -. DR eggNOG; arCOG05061; Archaea. DR eggNOG; COG0176; LUCA. DR HOGENOM; HOG000226073; -. DR KO; K00616; -. DR OMA; GRDFYEV; -. DR BioCyc; NMAR436308:GI3J-314-MONOMER; -. DR UniPathway; UPA00115; UER00414. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004801; F:sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00494; Transaldolase_3b; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR001585; TAL/FSA. DR InterPro; IPR022999; Transaldolase_3B. DR InterPro; IPR004731; Transaldolase_3B/F6P_aldolase. DR InterPro; IPR018225; Transaldolase_AS. DR PANTHER; PTHR10683; PTHR10683; 1. DR Pfam; PF00923; Transaldolase; 1. DR TIGRFAMs; TIGR00875; fsa_talC_mipB; 1. DR PROSITE; PS01054; TRANSALDOLASE_1; 1. DR PROSITE; PS00958; TRANSALDOLASE_2; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Pentose shunt; Reference proteome; KW Schiff base; Transferase. FT CHAIN 1 222 Probable transaldolase. FT /FTId=PRO_1000126333. FT ACT_SITE 83 83 Schiff-base intermediate with substrate. FT {ECO:0000255|HAMAP-Rule:MF_00494}. SQ SEQUENCE 222 AA; 24341 MW; E7E5E7DED90DB353 CRC64; MKIFLDTANL ESIKKFNDMG LLDGITTNPS LMSKEKGNPK DAMEEITKII KGDVSLEVVS TDFSGMVDEG KRLRQYGDNV VVKVPMTPDG LKACKSLSSE GIPVNVTLVF SPNQALLAAK SGAKYVSPFI GRLDDIGQDG MNLIQDIKDI FKNYPHLKTE ILVASVRHPM HVVEAAKIGA DVVTLPPGVL DKMLQHPLTK IGLENFLKDW EKVKAENPDI KI // ID SYT_NITMS Reviewed; 621 AA. AC A9A2B1; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 62. DE RecName: Full=Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; DE EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184}; DE AltName: Full=Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; DE Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184}; GN Name=thrS {ECO:0000255|HAMAP-Rule:MF_00184}; GN OrderedLocusNames=Nmar_0926; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-threonine + tRNA(Thr) = AMP + CC diphosphate + L-threonyl-tRNA(Thr). {ECO:0000255|HAMAP- CC Rule:MF_00184}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00184}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP- CC Rule:MF_00184}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00184}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000255|HAMAP-Rule:MF_00184}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12822.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2B1; -. DR STRING; 436308.Nmar_0926; -. DR EnsemblBacteria; ABX12822; ABX12822; Nmar_0926. DR KEGG; nmr:Nmar_0926; -. DR eggNOG; arCOG00401; Archaea. DR eggNOG; COG0441; LUCA. DR HOGENOM; HOG000073571; -. DR KO; K01868; -. DR OMA; MYELTRY; -. DR BioCyc; NMAR436308:GI3J-954-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004829; F:threonine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006435; P:threonyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.800; -; 1. DR HAMAP; MF_00184; Thr_tRNA_synth; 1. DR InterPro; IPR002314; aa-tRNA-synt_IIb. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004154; Anticodon-bd. DR InterPro; IPR002320; Thr-tRNA-ligase_IIa. DR InterPro; IPR015011; Threonyl-tRNA_syn_edit_dom_arc. DR Pfam; PF03129; HGTP_anticodon; 1. DR Pfam; PF00587; tRNA-synt_2b; 1. DR Pfam; PF08915; tRNA-Thr_ED; 1. DR PRINTS; PR01047; TRNASYNTHTHR. DR ProDom; PD016189; tRNA-Thr_ED_arc; 1. DR SUPFAM; SSF52954; SSF52954; 1. DR TIGRFAMs; TIGR00418; thrS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; KW Reference proteome; Zinc. FT CHAIN 1 621 Threonine--tRNA ligase. FT /FTId=PRO_1000098589. FT REGION 202 501 Catalytic. FT METAL 294 294 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00184}. FT METAL 346 346 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00184}. FT METAL 470 470 Zinc; catalytic. {ECO:0000255|HAMAP- FT Rule:MF_00184}. SQ SEQUENCE 621 AA; 71397 MW; D43DE2452A26E544 CRC64; MRILQLHCDS IEYTPTKKEI KSAEEIENPQ TQRLEEIVVA FVAIEDGDDS SVAKNAISQI KNSMEKIGCK KLLLYPYAHL SSNLAKPSTA MSLLQEMESE ASDLEVSHSP FGWTKSYKVQ VKGHPLAESS KVVTKDSTTK DDDEDTSDAL KGESTIRSYW KIMSPDGTMI NIGDYDFSNH KKLEILAKYE SAKQRQVDEP PPHVALMKKL AIADYEPASD SGNMRFFPNG RLMKSLIERY VTDRVKEYGG YEVETPIMYD SEHPSMVSYF NRFPARQYNI DSEGKKLFLR FAACFGQFLM ANQFQMSYKN LPYKLYELTR YSFRREQSGE LVGLRRLRAF TMPDCHAFCK DIPQAVDEIK VRFDLSQSVL KELGIDESDY DMAIRFTEDF YNENKSAIEE LVKKHGRPVL VEMWKEKFFY FVLKWEFNFI DNLGKASALS TDQIDVENGD RYGIEFVDEN NTAQHPIILH NSPSGAIERI IYALLEKAAD DSKKGKKPQL PLWLAPTQVR IIPLKEEFYD FCNNLCDKIS AQNVRVDVDD RNESIGKRIR EAEKEWIQYI LVIGEKEAGS ENLSIRDRQT GNVREVSFDD FMNEINEQTS GKPYTGLNQS QHLSKRPQLM V // ID SYS_NITMS Reviewed; 421 AA. AC A9A4V3; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 59. DE RecName: Full=Serine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00176}; DE EC=6.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00176}; DE AltName: Full=Seryl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00176}; DE Short=SerRS {ECO:0000255|HAMAP-Rule:MF_00176}; DE AltName: Full=Seryl-tRNA(Ser/Sec) synthetase {ECO:0000255|HAMAP-Rule:MF_00176}; GN Name=serS {ECO:0000255|HAMAP-Rule:MF_00176}; GN OrderedLocusNames=Nmar_1511; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the attachment of serine to tRNA(Ser). Is also CC able to aminoacylate tRNA(Sec) with serine, to form the CC misacylated tRNA L-seryl-tRNA(Sec), which will be further CC converted into selenocysteinyl-tRNA(Sec). {ECO:0000255|HAMAP- CC Rule:MF_00176}. CC -!- CATALYTIC ACTIVITY: ATP + L-serine + tRNA(Ser) = AMP + diphosphate CC + L-seryl-tRNA(Ser). {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- CATALYTIC ACTIVITY: ATP + L-serine + tRNA(Sec) = AMP + diphosphate CC + L-seryl-tRNA(Sec). {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- PATHWAY: Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) CC biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step CC 1/1. {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- SUBUNIT: Homodimer. The tRNA molecule binds across the dimer. CC {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- DOMAIN: Consists of two distinct domains, a catalytic core and a CC N-terminal extension that is involved in tRNA binding. CC {ECO:0000255|HAMAP-Rule:MF_00176}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. Type-1 seryl-tRNA synthetase subfamily. CC {ECO:0000255|HAMAP-Rule:MF_00176}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13407.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4V3; -. DR STRING; 436308.Nmar_1511; -. DR PRIDE; A9A4V3; -. DR EnsemblBacteria; ABX13407; ABX13407; Nmar_1511. DR KEGG; nmr:Nmar_1511; -. DR eggNOG; arCOG00403; Archaea. DR eggNOG; COG0172; LUCA. DR HOGENOM; HOG000035937; -. DR KO; K01875; -. DR OMA; NTVRESI; -. DR BioCyc; NMAR436308:GI3J-1553-MONOMER; -. DR UniPathway; UPA00906; UER00895. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004828; F:serine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016260; P:selenocysteine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0097056; P:selenocysteinyl-tRNA(Sec) biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006434; P:seryl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.40; -; 1. DR HAMAP; MF_00176; Ser_tRNA_synth_type1; 1. DR InterPro; IPR002314; aa-tRNA-synt_IIb. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR002317; Ser-tRNA-ligase_type_1. DR InterPro; IPR015866; Ser-tRNA-synth_1_N. DR InterPro; IPR010978; tRNA-bd_arm. DR PANTHER; PTHR11778; PTHR11778; 1. DR Pfam; PF02403; Seryl_tRNA_N; 1. DR Pfam; PF00587; tRNA-synt_2b; 1. DR PIRSF; PIRSF001529; Ser-tRNA-synth_IIa; 1. DR PRINTS; PR00981; TRNASYNTHSER. DR SUPFAM; SSF46589; SSF46589; 1. DR TIGRFAMs; TIGR00414; serS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; KW Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome. FT CHAIN 1 421 Serine--tRNA ligase. FT /FTId=PRO_1000098101. FT NP_BIND 260 262 ATP. {ECO:0000255|HAMAP-Rule:MF_00176}. FT NP_BIND 347 350 ATP. {ECO:0000255|HAMAP-Rule:MF_00176}. FT REGION 229 231 Serine binding. {ECO:0000255|HAMAP- FT Rule:MF_00176}. FT BINDING 276 276 ATP; via amide nitrogen and carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00176}. FT BINDING 283 283 Serine. {ECO:0000255|HAMAP- FT Rule:MF_00176}. FT BINDING 383 383 Serine. {ECO:0000255|HAMAP- FT Rule:MF_00176}. SQ SEQUENCE 421 AA; 48662 MW; 7A741FA1E50617D9 CRC64; MLDPKLLKEK PQVIRDMLKA RAVDFDLDGL IESDQKRREF IIKTDEFKKR RNEIGNEIAQ KKKAGEDTST ILDEMKNVSA ELAKLESQQE EIESKYAKLA FTVPNLVHES VPVGPDDTAN KEMRKWGEIP QFDFKINDHI DMSENLDLVD LERAAKVAGA RFYYLKNDLV RLNQSLIHFA LDFLAEKEYS LVQPPYMINR SSMEGAVIAD DFEEVIYKVE EEDLYMIGTS EHAMAAMHSK EIIEGKDLPI RYAGVSPCFR KEAGAHGRDQ KGIFRVHQFD KIEQFVYARP EDSWKEHEKM LAVAEEFYQK LEIPHRVMLL STGDMGKISA KTYDIEAWMA GQNSYREIVS CSNCLDYQAR RLKIRFRDKT NEDTQYIHTL NSTLVATTRV LVSIMENFQT KDGHIKIPQV LQSYMGNQKE I // ID THIL_NITMS Reviewed; 310 AA. AC A9A3T2; DT 22-FEB-2012, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE RecName: Full=Thiamine-monophosphate kinase {ECO:0000255|HAMAP-Rule:MF_02128}; DE Short=TMP kinase {ECO:0000255|HAMAP-Rule:MF_02128}; DE Short=Thiamine-phosphate kinase {ECO:0000255|HAMAP-Rule:MF_02128}; DE EC=2.7.4.16 {ECO:0000255|HAMAP-Rule:MF_02128}; GN Name=thiL {ECO:0000255|HAMAP-Rule:MF_02128}; GN OrderedLocusNames=Nmar_1448; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the ATP-dependent phosphorylation of thiamine- CC monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the CC active form of vitamin B1. {ECO:0000255|HAMAP-Rule:MF_02128}. CC -!- CATALYTIC ACTIVITY: ATP + thiamine phosphate = ADP + thiamine CC diphosphate. {ECO:0000255|HAMAP-Rule:MF_02128}. CC -!- PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis; CC thiamine diphosphate from thiamine phosphate: step 1/1. CC {ECO:0000255|HAMAP-Rule:MF_02128}. CC -!- MISCELLANEOUS: Reaction mechanism of ThiL seems to utilize a CC direct, inline transfer of the gamma-phosphate of ATP to TMP CC rather than a phosphorylated enzyme intermediate. CC {ECO:0000255|HAMAP-Rule:MF_02128}. CC -!- SIMILARITY: Belongs to the thiamine-monophosphate kinase family. CC {ECO:0000255|HAMAP-Rule:MF_02128}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13344.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3T2; -. DR STRING; 436308.Nmar_1448; -. DR EnsemblBacteria; ABX13344; ABX13344; Nmar_1448. DR KEGG; nmr:Nmar_1448; -. DR eggNOG; arCOG00638; Archaea. DR eggNOG; COG0611; LUCA. DR HOGENOM; HOG000228430; -. DR KO; K00946; -. DR OMA; IAAMCAK; -. DR BioCyc; NMAR436308:GI3J-1485-MONOMER; -. DR UniPathway; UPA00060; UER00142. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009030; F:thiamine-phosphate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-KW. DR GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1330.10; -; 1. DR Gene3D; 3.90.650.10; -; 1. DR HAMAP; MF_02128; TMP_kinase; 1. DR InterPro; IPR010918; AIR_synth_C_dom. DR InterPro; IPR016188; PurM-like_N. DR InterPro; IPR006283; ThiL. DR PANTHER; PTHR30270; PTHR30270; 1. DR Pfam; PF00586; AIRS; 1. DR PIRSF; PIRSF005303; Thiam_monoph_kin; 1. DR SUPFAM; SSF56042; SSF56042; 1. DR TIGRFAMs; TIGR01379; thiL; 1. PE 3: Inferred from homology; KW ATP-binding; Complete proteome; Kinase; Magnesium; Metal-binding; KW Nucleotide-binding; Reference proteome; Thiamine biosynthesis; KW Transferase. FT CHAIN 1 310 Thiamine-monophosphate kinase. FT /FTId=PRO_0000415642. FT NP_BIND 114 115 ATP. {ECO:0000255|HAMAP-Rule:MF_02128}. FT METAL 24 24 Magnesium 3. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 24 24 Magnesium 4; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_02128}. FT METAL 38 38 Magnesium 1; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_02128}. FT METAL 39 39 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 39 39 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 67 67 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 67 67 Magnesium 3. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 67 67 Magnesium 4. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 115 115 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 203 203 Magnesium 3. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT METAL 206 206 Magnesium 5. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT BINDING 46 46 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT BINDING 138 138 ATP. {ECO:0000255|HAMAP-Rule:MF_02128}. FT BINDING 205 205 ATP. {ECO:0000255|HAMAP-Rule:MF_02128}. FT BINDING 251 251 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02128}. FT BINDING 306 306 Substrate. {ECO:0000255|HAMAP- FT Rule:MF_02128}. SQ SEQUENCE 310 AA; 34329 MW; EC35043D2070BD5D CRC64; MSKLDESEII KIFQRKLGNK NSEDVEIFKL KQNIIAKTDT LVQSTDIPPK MKLGEAARKS VVACVSDFAA KGVKPQYGII SINFPSNISR SKVEEAATGF RKACSEFGIS ILGGDTNAGK EIVFNVCLFG SAEKIVPRNG SESKDLIFAT GPFGYTGAGL SILLYKKKGK REFVAKAIKA VTHPKPRVDF GVKNKRYFTS SMDSSDGLST TLNEMAKQSK KKFVINNSPH KKDLGEFAKS NQDNLVFHGG EEYEFVFTIN PKHKKTILKN AKSLRTPIIE IGYVTTGKGV ILQRDNKDIP LKDKGWKHFR // ID TRPD_NITMS Reviewed; 348 AA. AC A9A298; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 54. DE RecName: Full=Anthranilate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00211}; DE EC=2.4.2.18 {ECO:0000255|HAMAP-Rule:MF_00211}; GN Name=trpD {ECO:0000255|HAMAP-Rule:MF_00211}; GN OrderedLocusNames=Nmar_0913; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the transfer of the phosphoribosyl group of 5- CC phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield CC N-(5'-phosphoribosyl)-anthranilate (PRA). {ECO:0000255|HAMAP- CC Rule:MF_00211}. CC -!- CATALYTIC ACTIVITY: N-(5-phospho-D-ribosyl)-anthranilate + CC diphosphate = anthranilate + 5-phospho-alpha-D-ribose 1- CC diphosphate. {ECO:0000255|HAMAP-Rule:MF_00211}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000255|HAMAP-Rule:MF_00211}; CC Note=Binds 2 magnesium ions per monomer. {ECO:0000255|HAMAP- CC Rule:MF_00211}; CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 2/5. {ECO:0000255|HAMAP- CC Rule:MF_00211}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00211}. CC -!- SIMILARITY: Belongs to the anthranilate phosphoribosyltransferase CC family. {ECO:0000255|HAMAP-Rule:MF_00211}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12809.1; -; Genomic_DNA. DR ProteinModelPortal; A9A298; -. DR STRING; 436308.Nmar_0913; -. DR EnsemblBacteria; ABX12809; ABX12809; Nmar_0913. DR KEGG; nmr:Nmar_0913; -. DR eggNOG; arCOG02012; Archaea. DR eggNOG; COG0547; LUCA. DR HOGENOM; HOG000230451; -. DR KO; K00766; -. DR OMA; MIVLNAG; -. DR BioCyc; NMAR436308:GI3J-941-MONOMER; -. DR UniPathway; UPA00035; UER00041. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004048; F:anthranilate phosphoribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000162; P:tryptophan biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1030.10; -; 2. DR HAMAP; MF_00211; TrpD; 1. DR InterPro; IPR005940; Anthranilate_Pribosyl_Tfrase. DR InterPro; IPR000312; Glycosyl_Trfase_fam3. DR InterPro; IPR017459; Glycosyl_Trfase_fam3_N_dom. DR Pfam; PF02885; Glycos_trans_3N; 1. DR Pfam; PF00591; Glycos_transf_3; 1. DR SUPFAM; SSF47648; SSF47648; 1. DR SUPFAM; SSF52418; SSF52418; 1. DR TIGRFAMs; TIGR01245; trpD; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis; Aromatic amino acid biosynthesis; KW Complete proteome; Glycosyltransferase; Magnesium; Metal-binding; KW Reference proteome; Transferase; Tryptophan biosynthesis. FT CHAIN 1 348 Anthranilate phosphoribosyltransferase. FT /FTId=PRO_1000099825. FT REGION 84 85 Phosphoribosylpyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT REGION 91 94 Phosphoribosylpyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT REGION 109 117 Phosphoribosylpyrophosphate binding. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT METAL 93 93 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT METAL 226 226 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT METAL 227 227 Magnesium 1. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT METAL 227 227 Magnesium 2. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT BINDING 81 81 Anthranilate 1; via carbonyl oxygen. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT BINDING 81 81 Phosphoribosylpyrophosphate; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT BINDING 89 89 Phosphoribosylpyrophosphate. FT {ECO:0000255|HAMAP-Rule:MF_00211}. FT BINDING 112 112 Anthranilate 1. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT BINDING 121 121 Phosphoribosylpyrophosphate; via amide FT nitrogen. {ECO:0000255|HAMAP- FT Rule:MF_00211}. FT BINDING 167 167 Anthranilate 2. {ECO:0000255|HAMAP- FT Rule:MF_00211}. SQ SEQUENCE 348 AA; 37900 MW; 393482ADC359B1B9 CRC64; MISDLISKLQ EKTDLTYDEM NQVMTDVLSG KTTDSENADF LSNLTDKGET DDELLGMLDK MQEFSLKIEP KNTGTIIDMC GTGGDKLQTF NISTTASFVV AAAGGVVAKH GNRSSSGISG SADIFEYFGY DLNLEPPKIA EILEKHNICF MFAQKFHPAM KHVSVARKQL GKRTAFNLLG PLSNPAKVKN QLVGVFSIEY LDRLPLILKR KGAQNIMTVR SDDGMDEFST SSTNRVCVLR DDKVLMNAID PEVVGLHKSS LTDIQIQTKE DAIESFVGVL NNTANQAMIE TTALNAAGGL IVANISNNFE EAVELALNTI KDGKAFSLLE KFVQDTGDIS KLKEIADG // ID TRM56_NITMS Reviewed; 177 AA. AC A9A624; DT 03-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE RecName: Full=tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00077}; DE EC=2.1.1.206 {ECO:0000255|HAMAP-Rule:MF_00077}; DE AltName: Full=tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000255|HAMAP-Rule:MF_00077}; GN OrderedLocusNames=Nmar_1606; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Specifically catalyzes the AdoMet-dependent 2'-O-ribose CC methylation of cytidine at position 56 in tRNAs. CC {ECO:0000255|HAMAP-Rule:MF_00077}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + cytidine(56) in tRNA CC = S-adenosyl-L-homocysteine + 2'-O-methylcytidine(56) in tRNA. CC {ECO:0000255|HAMAP-Rule:MF_00077}. CC -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00077}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00077}. CC -!- SIMILARITY: Belongs to the aTrm56 family. {ECO:0000255|HAMAP- CC Rule:MF_00077}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13502.1; -; Genomic_DNA. DR ProteinModelPortal; A9A624; -. DR STRING; 436308.Nmar_1606; -. DR EnsemblBacteria; ABX13502; ABX13502; Nmar_1606. DR KEGG; nmr:Nmar_1606; -. DR eggNOG; arCOG01857; Archaea. DR eggNOG; COG1303; LUCA. DR HOGENOM; HOG000015482; -. DR KO; K07254; -. DR OMA; LGHRPER; -. DR BioCyc; NMAR436308:GI3J-1650-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0008175; F:tRNA methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0002128; P:tRNA nucleoside ribose methylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1280.10; -; 1. DR HAMAP; MF_00077; tRNA_methyltr_aTrm56; 1. DR InterPro; IPR029028; Alpha/beta_knot_MTases. DR InterPro; IPR029026; tRNA_m1G_MTases_N. DR InterPro; IPR002845; tRNA_mtfrase_aTrm56. DR Pfam; PF01994; Trm56; 1. DR PIRSF; PIRSF016123; UCP016123; 1. DR ProDom; PD016584; DUF127; 1. DR SUPFAM; SSF75217; SSF75217; 1. PE 3: Inferred from homology; KW Complete proteome; Cytoplasm; Methyltransferase; Reference proteome; KW S-adenosyl-L-methionine; Transferase; tRNA processing. FT CHAIN 1 177 tRNA (cytidine(56)-2'-O)- FT methyltransferase. FT /FTId=PRO_0000365318. FT REGION 108 112 S-adenosyl-L-methionine binding. FT {ECO:0000255|HAMAP-Rule:MF_00077}. FT BINDING 83 83 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000255|HAMAP- FT Rule:MF_00077}. SQ SEQUENCE 177 AA; 20187 MW; 8D9DDDBB42900621 CRC64; MVIEVVRIGQ RLVRDDRVTT HVALVSRAFG AERIFMTEIN PEIKDTLGKI NDTWGGNFEI EFIDSWKPIV KKKKEEGFKI VHLSMYGEKI NDAQEEIRKE ENLLIVVGAE KVPREIYELA DFNVGVGSQP HSEISALAIL LDRIQGGQQF EKEFPNAKRK IIPTKTGKNV QVKETRD // ID VATA_NITMS Reviewed; 592 AA. AC A9A2R0; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE RecName: Full=V-type ATP synthase alpha chain {ECO:0000255|HAMAP-Rule:MF_00309}; DE EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_00309}; DE AltName: Full=V-ATPase subunit A {ECO:0000255|HAMAP-Rule:MF_00309}; GN Name=atpA {ECO:0000255|HAMAP-Rule:MF_00309}; GN OrderedLocusNames=Nmar_1691; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. The archaeal alpha chain is a CC catalytic subunit. {ECO:0000255|HAMAP-Rule:MF_00309}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + H(+)(In) = ADP + phosphate + CC H(+)(Out). {ECO:0000255|HAMAP-Rule:MF_00309}. CC -!- SIMILARITY: Belongs to the ATPase alpha/beta chains family. CC {ECO:0000255|HAMAP-Rule:MF_00309}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13587.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2R0; -. DR SMR; A9A2R0; 60-585. DR STRING; 436308.Nmar_1691; -. DR EnsemblBacteria; ABX13587; ABX13587; Nmar_1691. DR KEGG; nmr:Nmar_1691; -. DR eggNOG; arCOG00868; Archaea. DR eggNOG; COG1155; LUCA. DR HOGENOM; HOG000161057; -. DR KO; K02117; -. DR OMA; RDIGIMT; -. DR BioCyc; NMAR436308:GI3J-1736-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1140.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00309; ATP_synth_A_arch; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR031686; ATP-synt_a_Xtn. DR InterPro; IPR020003; ATPase_a/bsu_AS. DR InterPro; IPR000793; ATPase_F1/V1/A1-cplx_a/bsu_C. DR InterPro; IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd. DR InterPro; IPR004100; ATPase_F1_a/bsu_N. DR InterPro; IPR024034; ATPase_F1_bsu/V1_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR022878; V-ATPase_asu. DR Pfam; PF00006; ATP-synt_ab; 1. DR Pfam; PF02874; ATP-synt_ab_N; 1. DR Pfam; PF16886; ATP-synt_ab_Xtn; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF47917; SSF47917; 1. DR SUPFAM; SSF50615; SSF50615; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00152; ATPASE_ALPHA_BETA; 1. PE 3: Inferred from homology; KW ATP synthesis; ATP-binding; Complete proteome; Hydrogen ion transport; KW Hydrolase; Ion transport; Nucleotide-binding; Reference proteome; KW Transport. FT CHAIN 1 592 V-type ATP synthase alpha chain. FT /FTId=PRO_1000115642. FT NP_BIND 234 241 ATP. {ECO:0000255|HAMAP-Rule:MF_00309}. SQ SEQUENCE 592 AA; 65181 MW; EF69FB748296FECC CRC64; MAAQGRIVWV SGPAVRADGM SEAKMYETVT VGDSKLVGEV IRLTGDVAFI QVYESTSGLK PGEPVIGTGN PLSVLLGPGI IGQLYDGIQR PLRALSEASG SFIGRGITTT PVDMAKKYHF VPSVSNGDEV AAGNVIGVVQ ETDLIEHSIM VPPDHKGGKI SNLVSEGDYD LETVLATTEG EGETVELKMY HRWPVRKPRP YKNRYDPTVP LLTGQRVIDT FFPIAKGGTG SIPGAFGTGK TVTLHQIAKW ADSQVVVYIG CGERGNEMTE VLVEFPHLKD PRSGKPLMDR TVLVANTSNM PVAAREASIY TGVTIAEYYR DMGKDVVLVA DSTSRWAEAL REMSGRLEEM PAEEGYPSYL ASRLAEFYER AGRVRAAGSP DRDGSVTLIG AVSPSGGDFT EPVTTHTMRF IKTFWALDAK LAYSRHYPSI NWMNSYSGYL ADIAKWWGEN INEDWLSLRS EVYGVLQRED TLKEIVRLLG PEALPDEEKL ILEVARMVKI GLLQQNSFDD VDTYCSPEKQ YKLMKLLVDF YKKGQQAIKE GTPLADIRAM KSITTLLKAR MDVKDDEMPK LDQLDADMQE EFKSITGVKV SN // ID VATB_NITMS Reviewed; 461 AA. AC A9A2Q9; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 56. DE RecName: Full=V-type ATP synthase beta chain {ECO:0000255|HAMAP-Rule:MF_00310}; DE AltName: Full=V-ATPase subunit B {ECO:0000255|HAMAP-Rule:MF_00310}; GN Name=atpB {ECO:0000255|HAMAP-Rule:MF_00310}; GN OrderedLocusNames=Nmar_1690; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. The archaeal beta chain is a CC regulatory subunit. {ECO:0000255|HAMAP-Rule:MF_00310}. CC -!- SIMILARITY: Belongs to the ATPase alpha/beta chains family. CC {ECO:0000255|HAMAP-Rule:MF_00310}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13586.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Q9; -. DR SMR; A9A2Q9; 17-460. DR STRING; 436308.Nmar_1690; -. DR EnsemblBacteria; ABX13586; ABX13586; Nmar_1690. DR KEGG; nmr:Nmar_1690; -. DR eggNOG; arCOG00865; Archaea. DR eggNOG; COG1156; LUCA. DR HOGENOM; HOG000165320; -. DR KO; K02118; -. DR OMA; WRERRYL; -. DR BioCyc; NMAR436308:GI3J-1735-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00310; ATP_synth_B_arch; 1. DR InterPro; IPR020003; ATPase_a/bsu_AS. DR InterPro; IPR000194; ATPase_F1/V1/A1_a/bsu_nucl-bd. DR InterPro; IPR004100; ATPase_F1_a/bsu_N. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR022879; V-ATPase_su_B/beta. DR Pfam; PF00006; ATP-synt_ab; 1. DR Pfam; PF02874; ATP-synt_ab_N; 1. DR PIRSF; PIRSF039114; V-ATPsynth_beta/V-ATPase_B; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00152; ATPASE_ALPHA_BETA; 1. PE 3: Inferred from homology; KW ATP synthesis; Complete proteome; Hydrogen ion transport; KW Ion transport; Reference proteome; Transport. FT CHAIN 1 461 V-type ATP synthase beta chain. FT /FTId=PRO_1000115662. SQ SEQUENCE 461 AA; 50670 MW; B5960CB21DED9057 CRC64; MTAEGGVQYS KIAEIKGPLV IVDDVENAAF DELVEVETKD GERRLGKVLE VGNGKAIVQV FEGTTGLSIA ATNAKFVGKV MEMPVSREVL GRVFDGLGRP KDGLPDPIAD QFIDINGEPM NPEQREYPKD FIQTGVSVID GMITLVRGQK LPIFSGSGMS HNLLAAQIAR QASVIGTQDD FAVVFAAIGV QYSEAEYFRR SLEESGALKR SVLFLNTADD PAIERIITPR VALTVAEYLA FELGMHVLVI LTDMTNYAEA LREISAAREE VPGRKGYPGY LYTDLSTIYE RAGKLNGKKG SVTQVPILSM PSDDITHPIP DLTGYITEGQ IVLGRDLFRQ GVYPPVNILM SLSRLMKDGI GEGSTRADHG EISNQVYDAY SRAQEVRALA GIVGKAGLTE IDLKYMDVGD VFENEFLSQA TDENRTIEET LGILWKIVSK LPRNEITKIK DKYVDQYYKE E // ID Y1233_NITMS Reviewed; 154 AA. AC A9A1F0; DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE RecName: Full=UPF0218 protein Nmar_1233 {ECO:0000255|HAMAP-Rule:MF_00590}; GN OrderedLocusNames=Nmar_1233; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the UPF0218 family. {ECO:0000255|HAMAP- CC Rule:MF_00590}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13129.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1233; -. DR EnsemblBacteria; ABX13129; ABX13129; Nmar_1233. DR KEGG; nmr:Nmar_1233; -. DR eggNOG; arCOG04076; Archaea. DR eggNOG; COG1909; LUCA. DR HOGENOM; HOG000229337; -. DR KO; K09735; -. DR OMA; HRENSIS; -. DR BioCyc; NMAR436308:GI3J-1266-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR HAMAP; MF_00590; UPF0218; 1. DR InterPro; IPR007164; DUF359. DR Pfam; PF04019; DUF359; 1. DR PIRSF; PIRSF006533; UCP006533; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 154 UPF0218 protein Nmar_1233. FT /FTId=PRO_0000380064. SQ SEQUENCE 154 AA; 17261 MW; 594A981A3C10F445 CRC64; MKIPLGILLS ENQADKENIL KHLEENSYII TVGDRTTEKM IDFDLIPSLQ IVDGIEKREK REPPKLVNTT EITVDNPPAE ITSQSIDVIK KAFSMESPVR ILVTGEEDLL VLPVCIHAPE NSVVMYGQPN EGLVIVKITS EIRNKVQSLL DLME // ID Y215_NITMS Reviewed; 275 AA. AC A9A2Y3; DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=MEMO1 family protein Nmar_0215 {ECO:0000255|HAMAP-Rule:MF_00055}; GN OrderedLocusNames=Nmar_0215; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the MEMO1 family. {ECO:0000255|HAMAP- CC Rule:MF_00055}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12111.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Y3; -. DR STRING; 436308.Nmar_0215; -. DR EnsemblBacteria; ABX12111; ABX12111; Nmar_0215. DR KEGG; nmr:Nmar_0215; -. DR eggNOG; arCOG01728; Archaea. DR eggNOG; COG1355; LUCA. DR HOGENOM; HOG000225261; -. DR KO; K06990; -. DR OMA; ISMCGYG; -. DR BioCyc; NMAR436308:GI3J-220-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008198; F:ferrous iron binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0006725; P:cellular aromatic compound metabolic process; IEA:InterPro. DR HAMAP; MF_00055; MEMO1; 1. DR InterPro; IPR002737; MEMO1_fam. DR InterPro; IPR004183; Xdiol_dOase_suB. DR PANTHER; PTHR11060; PTHR11060; 1. DR Pfam; PF01875; Memo; 1. DR SUPFAM; SSF53213; SSF53213; 1. DR TIGRFAMs; TIGR04336; AmmeMemoSam_B; 1. PE 3: Inferred from homology; KW Complete proteome; Reference proteome. FT CHAIN 1 275 MEMO1 family protein Nmar_0215. FT /FTId=PRO_1000091788. SQ SEQUENCE 275 AA; 30105 MW; 64D2F8BE96714D97 CRC64; MIRKPVVAGQ FYPGTKNELE EMINSCIQHK FGPGNQIQNN EGIYGVISPH AGYVYSGPTA CYSYKAISSK NPELVIILGP NHFGVGKDVA TMVNAQWETP LGLVDVDSEA AKEIANNSKY IEIDEFSHSR DHSLEVQIPM LQSIFSEKFK ILPIILRDQS LEMAKDVGNA VAQIAKSRNT MIVASSDFTH YEENSFAHSQ DKALIEPILE MDVEKFYSVL MEKRVTACGY GAMASVMIAC KNLGAVKGEL LSYTTSGDVM GDTSSVVGYG AIKFI // ID A9A4U4_NITMS Unreviewed; 190 AA. AC A9A4U4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Ammonia monooxygenase/methane monooxygenase, subunit C {ECO:0000313|EMBL:ABX13398.1}; DE SubName: Full=Putative archaeal ammonia monooxygenase subunit C {ECO:0000313|EMBL:ABY89141.1}; GN Name=amoC {ECO:0000313|EMBL:ABY89141.1}; GN OrderedLocusNames=Nmar_1502 {ECO:0000313|EMBL:ABX13398.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13398.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABY89141.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89141.1}; RX PubMed=16177789; DOI=10.1038/nature03911; RA Konneke M., Bernhard A.E., de la Torre J.R., Walker C.B., RA Waterbury J.B., Stahl D.A.; RT "Isolation of an autotrophic ammonia-oxidizing marine archaeon."; RL Nature 437:543-546(2005). RN [2] {ECO:0000313|EMBL:ABY89141.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89141.1}; RA Koenneke M., Bernhard A.E., de la Torre J.R., Walker C.B., RA Waterbury J.B., Stahl D.A.; RL Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:ABX13398.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13398.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:ABY89141.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89141.1}; RA de la Torre J.R., Walker C.B., Ingalls A.E., Konneke M., Stahl D.A.; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EMBL:ABY89141.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89141.1}; RX PubMed=18205821; DOI=10.1111/j.1462-2920.2007.01506.x; RA de la Torre J.R., Walker C.B., Ingalls A.E., Konneke M., Stahl D.A.; RT "Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing RT crenarchaeol."; RL Environ. Microbiol. 10:810-818(2008). RN [6] {ECO:0000313|EMBL:ABX13398.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13398.1}; RX PubMed=20421470; DOI=10.1073/pnas.0913533107; RA Walker C.B., de la Torre J.R., Klotz M.G., Urakawa H., Pinel N., RA Arp D.J., Brochier-Armanet C., Chain P.S., Chan P.P., Gollabgir A., RA Hemp J., Hugler M., Karr E.A., Konneke M., Shin M., Lawton T.J., RA Lowe T., Martens-Habbena W., Sayavedra-Soto L.A., Lang D., RA Sievert S.M., Rosenzweig A.C., Manning G., Stahl D.A.; RT "Nitrosopumilus maritimus genome reveals unique mechanisms for RT nitrification and autotrophy in globally distributed marine RT crenarchaea."; RL Proc. Natl. Acad. Sci. U.S.A. 107:8818-8823(2010). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13398.1; -; Genomic_DNA. DR EMBL; EU239959; ABY89141.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1502; -. DR EnsemblBacteria; ABX13398; ABX13398; Nmar_1502. DR KEGG; nmr:Nmar_1502; -. DR eggNOG; arCOG08699; Archaea. DR eggNOG; ENOG4111XMC; LUCA. DR HOGENOM; HOG000106182; -. DR KO; K10946; -. DR OMA; TIGVNEM; -. DR BioCyc; NMAR436308:GI3J-1544-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW. DR Gene3D; 1.20.1050.50; -; 1. DR InterPro; IPR006980; NH3_CH4_mOase_C. DR InterPro; IPR023349; NH3_CH4_mOase_C_dom. DR Pfam; PF04896; AmoC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Monooxygenase {ECO:0000313|EMBL:ABX13398.1}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13398.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 60 81 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 102 122 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 152 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 190 AA; 21407 MW; 9C2AB93FEACA8FCA CRC64; MITMAQMPAL IPKEVEIQRL KKIWLIVIAM GSTAASVEVD NFVDGSLHQT SIRDSAFTPA HWWLYSHFVA LPLGWGSAAI YDRKVPVLRG PNNSMNTGLK MTILGYLATM FTIGVNEMWH FWFVEEIFAV PNHWMFNMGV VVAFMGALAY VVRVYARLVE LGAETPGENP YVAEMYKMAL EGKLYSRSIP // ID A9A4U3_NITMS Unreviewed; 120 AA. AC A9A4U3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13397.1}; GN OrderedLocusNames=Nmar_1501 {ECO:0000313|EMBL:ABX13397.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13397.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABY89140.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89140.1}; RX PubMed=16177789; DOI=10.1038/nature03911; RA Konneke M., Bernhard A.E., de la Torre J.R., Walker C.B., RA Waterbury J.B., Stahl D.A.; RT "Isolation of an autotrophic ammonia-oxidizing marine archaeon."; RL Nature 437:543-546(2005). RN [2] {ECO:0000313|EMBL:ABY89140.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89140.1}; RA Koenneke M., Bernhard A.E., de la Torre J.R., Walker C.B., RA Waterbury J.B., Stahl D.A.; RL Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases. RN [3] {ECO:0000313|EMBL:ABX13397.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13397.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:ABY89140.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89140.1}; RA de la Torre J.R., Walker C.B., Ingalls A.E., Konneke M., Stahl D.A.; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|EMBL:ABY89140.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABY89140.1}; RX PubMed=18205821; DOI=10.1111/j.1462-2920.2007.01506.x; RA de la Torre J.R., Walker C.B., Ingalls A.E., Konneke M., Stahl D.A.; RT "Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing RT crenarchaeol."; RL Environ. Microbiol. 10:810-818(2008). RN [6] {ECO:0000313|EMBL:ABX13397.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13397.1}; RX PubMed=20421470; DOI=10.1073/pnas.0913533107; RA Walker C.B., de la Torre J.R., Klotz M.G., Urakawa H., Pinel N., RA Arp D.J., Brochier-Armanet C., Chain P.S., Chan P.P., Gollabgir A., RA Hemp J., Hugler M., Karr E.A., Konneke M., Shin M., Lawton T.J., RA Lowe T., Martens-Habbena W., Sayavedra-Soto L.A., Lang D., RA Sievert S.M., Rosenzweig A.C., Manning G., Stahl D.A.; RT "Nitrosopumilus maritimus genome reveals unique mechanisms for RT nitrification and autotrophy in globally distributed marine RT crenarchaea."; RL Proc. Natl. Acad. Sci. U.S.A. 107:8818-8823(2010). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13397.1; -; Genomic_DNA. DR EMBL; EU239959; ABY89140.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1501; -. DR EnsemblBacteria; ABX13397; ABX13397; Nmar_1501. DR KEGG; nmr:Nmar_1501; -. DR eggNOG; arCOG10586; Archaea. DR eggNOG; ENOG41111AG; LUCA. DR BioCyc; NMAR436308:GI3J-1543-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 68 87 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 99 118 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 120 AA; 12569 MW; 22397FB52E5BA7C5 CRC64; MTLPKGFGSG GGGGSSSADV ERMIGRRVEN MTGMITASYW AALIATFAGT AAGYFYYPWA YPTASGHFAF IVLAIIEAIG YIFCVKVMEE GSNKNSNGIV GASIAGTVAF VLFVSLFVGW // ID A9A1K9_NITMS Unreviewed; 139 AA. AC A9A1K9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13188.1}; GN OrderedLocusNames=Nmar_1292 {ECO:0000313|EMBL:ABX13188.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13188.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13188.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13188.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 3 HTH asnC-type DNA-binding domains. CC {ECO:0000256|RuleBase:RU000704}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13188.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K9; -. DR STRING; 436308.Nmar_1292; -. DR EnsemblBacteria; ABX13188; ABX13188; Nmar_1292. DR KEGG; nmr:Nmar_1292; -. DR eggNOG; arCOG01580; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000115326; -. DR OMA; DYELENE; -. DR BioCyc; NMAR436308:GI3J-1325-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR000485; AsnC-type_HTH_dom. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01037; AsnC_trans_reg; 1. DR Pfam; PF13404; HTH_AsnC-type; 1. DR PRINTS; PR00033; HTHASNC. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF54909; SSF54909; 1. DR PROSITE; PS50956; HTH_ASNC_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000704}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000704}; KW Transcription regulation {ECO:0000256|RuleBase:RU000704}. FT DOMAIN 1 66 HTH asnC-type DNA-binding. FT {ECO:0000259|PROSITE:PS50956}. SQ SEQUENCE 139 AA; 15250 MW; 8788B059F083ACFD CRC64; MYKDNVDEKI IGYLKEDSRE SFVDIGKKLK LSESAVRRRV KNLIGNGTIK KFTLELGEEN ATSAIVLVSV DSATDTSKVS LKLAKLEGVK TVYEITGQYD ITTIMSASSI AEINNSIDAL RKIPGVVDTN TVIILRKVV // ID A9A580_NITMS Unreviewed; 145 AA. AC A9A580; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 60. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX12279.1}; GN OrderedLocusNames=Nmar_0383 {ECO:0000313|EMBL:ABX12279.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12279.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12279.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12279.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH asnC-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000704}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12279.1; -; Genomic_DNA. DR ProteinModelPortal; A9A580; -. DR STRING; 436308.Nmar_0383; -. DR EnsemblBacteria; ABX12279; ABX12279; Nmar_0383. DR KEGG; nmr:Nmar_0383; -. DR eggNOG; arCOG01580; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000115326; -. DR KO; K03718; -. DR OMA; GIQNTET; -. DR BioCyc; NMAR436308:GI3J-399-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR000485; AsnC-type_HTH_dom. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF54909; SSF54909; 1. DR PROSITE; PS50956; HTH_ASNC_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000704}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000704}; KW Transcription regulation {ECO:0000256|RuleBase:RU000704}. FT DOMAIN 1 57 HTH asnC-type DNA-binding. FT {ECO:0000259|PROSITE:PS50956}. SQ SEQUENCE 145 AA; 16363 MW; 05B7A852FAC45B3C CRC64; MKLLFELTKD GSISVPVLSK KLGINASVLY SRIKRLVKKK LIKKFTVEID DSLLGIGVKA NVGINRDPKF KEAIHKKFME TPEVVSISEV TGRFDIMIQV YSKNLESLHS VVIEKIGKIE GVQNTETFVE LQKTDKDPVY LNELT // ID A9A4J7_NITMS Unreviewed; 342 AA. AC A9A4J7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 61. DE SubName: Full=Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABX12975.1}; GN OrderedLocusNames=Nmar_1079 {ECO:0000313|EMBL:ABX12975.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12975.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12975.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12975.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|RuleBase:RU361277}; CC -!- SIMILARITY: Belongs to the zinc-containing alcohol dehydrogenase CC family. {ECO:0000256|RuleBase:RU361277}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12975.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4J7; -. DR STRING; 436308.Nmar_1079; -. DR EnsemblBacteria; ABX12975; ABX12975; Nmar_1079. DR KEGG; nmr:Nmar_1079; -. DR eggNOG; arCOG01459; Archaea. DR eggNOG; COG1063; LUCA. DR HOGENOM; HOG000294670; -. DR KO; K00008; -. DR OMA; CQNQTSV; -. DR BioCyc; NMAR436308:GI3J-1110-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.180.10; -; 1. DR InterPro; IPR013149; ADH_C. DR InterPro; IPR013154; ADH_N. DR InterPro; IPR002085; ADH_SF_Zn-type. DR InterPro; IPR002328; ADH_Zn_CS. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020843; PKS_ER. DR PANTHER; PTHR11695; PTHR11695; 1. DR Pfam; PF08240; ADH_N; 1. DR Pfam; PF00107; ADH_zinc_N; 1. DR SMART; SM00829; PKS_ER; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00059; ADH_ZINC; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|RuleBase:RU361277}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|RuleBase:RU361277}. SQ SEQUENCE 342 AA; 37688 MW; A0F50DCDA7ED2F52 CRC64; MKTASVKEPS VISVSETENP SLESGEILVQ MHACGICGSD LEKVFGQYGQ PSMRLGHEPA GIVLDVGSGV TEFKKGDRIF THHHVPCYDC HFCNHGNETM CKKYYETNLS PCGLSEQYVV PAWNVSHGGV LKISDSLSFE EAAMIEPLAC CVRAWTKYHY QEGDSAAIFG VGPTGMMHVM LAQAKKFSKI FCFDVNDFRL DFAKKFNITE SINSMDETKK QKILEHTDNQ GVDVAIVATS SLKALDDAID MVRKGGAIMM FGVPSKGAKM DLDMSKIYSK EITLVTSYAA SDNDTKEALN LIESLQIDVK QLITHTYPID DTQKAFDHAR SGDNAMKIII TK // ID A9A123_NITMS Unreviewed; 289 AA. AC A9A123; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABX11984.1}; GN OrderedLocusNames=Nmar_0084 {ECO:0000313|EMBL:ABX11984.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11984.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11984.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11984.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11984.1; -; Genomic_DNA. DR ProteinModelPortal; A9A123; -. DR STRING; 436308.Nmar_0084; -. DR EnsemblBacteria; ABX11984; ABX11984; Nmar_0084. DR KEGG; nmr:Nmar_0084; -. DR eggNOG; arCOG03015; Archaea. DR eggNOG; COG0702; LUCA. DR KO; K00329; -. DR KO; K00356; -. DR OMA; DYESINV; -. DR BioCyc; NMAR436308:GI3J-85-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0050662; F:coenzyme binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF13460; NAD_binding_10; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 289 AA; 33035 MW; 3BF08A4CDC74EE00 CRC64; MEKPLQIVIT GASGFVAKNL RKYLSEKNIH LISISRKNFK PFKNETKIIS KTYEEQLLLP KIKNSYALIH LVGIGKQSTK TDYESINVQL TQKIVNLSKK AKIKKLVYTS GLGVFADTTM GYFISKFKAE TSIIDSKIDY TIFRPSYIVG KDDLFTKYLK KSIKKNQIII PGSGKYLIQP ISIGDVTKLI FQSIIDKRFK NKTLDLVGPE IISFKKYIQL YLQKKKTKLY HIDIEDAYRL ALTNSEFDYG VDDLNILVGN FVGDHKKLRN LSKMNFQSVK ELLKTGALL // ID A9A4E7_NITMS Unreviewed; 158 AA. AC A9A4E7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=TPR repeat-containing protein {ECO:0000313|EMBL:ABX12636.1}; GN OrderedLocusNames=Nmar_0740 {ECO:0000313|EMBL:ABX12636.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12636.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12636.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12636.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12636.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4E7; -. DR STRING; 436308.Nmar_0740; -. DR EnsemblBacteria; ABX12636; ABX12636; Nmar_0740. DR KEGG; nmr:Nmar_0740; -. DR eggNOG; arCOG03048; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000110152; -. DR OMA; IECYDEV; -. DR BioCyc; NMAR436308:GI3J-766-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR001440; TPR_1. DR InterPro; IPR013105; TPR_2. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF00515; TPR_1; 1. DR Pfam; PF07719; TPR_2; 1. DR Pfam; PF13181; TPR_8; 1. DR SMART; SM00028; TPR; 3. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 4. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 133 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 158 AA; 17491 MW; 7791F13041FD4A32 CRC64; MLAEAYECVE EGDFHDAISL YDLVLKREPS NIGALIDKGV TLQNMGRIKL AVRTYDKALL LSPQNIDALL NKGTALHSAQ KYDEAMECYD AVLKVDKKCA MALAYKGLSL GETGKLQDAL KHFKKALSID KEFDLASISK DIAKDLLKSI NQNKIKTQ // ID A9A590_NITMS Unreviewed; 660 AA. AC A9A590; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE SubName: Full=Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ABX12289.1}; GN OrderedLocusNames=Nmar_0393 {ECO:0000313|EMBL:ABX12289.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12289.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12289.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12289.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the peptidase S8 family. CC {ECO:0000256|RuleBase:RU003355}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12289.1; -; Genomic_DNA. DR ProteinModelPortal; A9A590; -. DR STRING; 436308.Nmar_0393; -. DR EnsemblBacteria; ABX12289; ABX12289; Nmar_0393. DR KEGG; nmr:Nmar_0393; -. DR eggNOG; arCOG00702; Archaea. DR eggNOG; ENOG411069W; LUCA. DR KO; K14647; -. DR OMA; ERDLACE; -. DR BioCyc; NMAR436308:GI3J-410-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro. DR Gene3D; 3.40.50.200; -; 2. DR InterPro; IPR003137; PA_domain. DR InterPro; IPR000209; Peptidase_S8/S53_dom. DR InterPro; IPR023827; Peptidase_S8_Asp-AS. DR InterPro; IPR022398; Peptidase_S8_His-AS. DR InterPro; IPR023828; Peptidase_S8_Ser-AS. DR InterPro; IPR015500; Peptidase_S8_subtilisin-rel. DR PANTHER; PTHR10795; PTHR10795; 2. DR Pfam; PF02225; PA; 1. DR Pfam; PF00082; Peptidase_S8; 1. DR PRINTS; PR00723; SUBTILISIN. DR SUPFAM; SSF52743; SSF52743; 2. DR PROSITE; PS00136; SUBTILASE_ASP; 1. DR PROSITE; PS00137; SUBTILASE_HIS; 1. DR PROSITE; PS00138; SUBTILASE_SER; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|RuleBase:RU004261}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Protease {ECO:0000256|RuleBase:RU004261}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Serine protease {ECO:0000256|RuleBase:RU004261}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 640 657 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 38 425 Peptidase S8. {ECO:0000259|Pfam:PF00082}. FT DOMAIN 231 325 PA (protease associated). FT {ECO:0000259|Pfam:PF02225}. SQ SEQUENCE 660 AA; 71945 MW; 1A3D61C84657646A CRC64; MGLILTQATD SKNQIHTYLE RSVPFVGTDI PRIDGIDGTG IKIAIIDTGV DFNHPDLFGW GHDGKVVGGY NFIQEGQPPM DNNGHGTQVA GVIAADGQAT GVAPKAKILA YKVSEDGEGV SSDLIIRAIE KAIEDDADII NISLGVNKTN TKIERAVNQA LEKEIFVVTA AGNDGPELGS IGSPGRNFGS VTVGATYNNL TSSLVATLEV NDKPYTVIPM AGNKKTEDAI SGKLVFGGFG KVDELKDLDV KDSILIVERG SDVKEELLYF SIKETNAADA GAKAMIVYNN IPGIFLGELI HEFIEPNYSP RIPVVSIDRE EGLEIIESIN GDEATLNLFF NPDYLAHFSS RGPVSPFYIK PEIVAPGAYI NTTQNNAGYN FTSGTSYAAP HVSGAAALLL QKNPELHHHE IKSLLLTTVE PVSDAYGDEF SIQETGAGRL NIAKAFDAKL IIEPPNFVGL ASSDNKVVEK QFQLKSLDGT WDGFDMTFDG PEFIKFGGEL VDENILNVKM RVLEDKFGEH EGKIKISHEG IQYVIPFVLH YTQGSISIVQ QNEKLFFEIH HPEEWSFAKI SVTNSKDGRI DTTTVTPDKA ASIDVYENAE YWVDAKIRIN GNTSSAYNTI EIKTLEERKR LDFDIPERQM VIIASAVIVI GIIGIVLKRR // ID A9A5C4_NITMS Unreviewed; 115 AA. AC A9A5C4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE RecName: Full=50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329}; GN Name=rpl18e {ECO:0000256|HAMAP-Rule:MF_00329}; GN OrderedLocusNames=Nmar_0427 {ECO:0000313|EMBL:ABX12323.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12323.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12323.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12323.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein L18e family. CC {ECO:0000256|HAMAP-Rule:MF_00329}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12323.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C4; -. DR STRING; 436308.Nmar_0427; -. DR EnsemblBacteria; ABX12323; ABX12323; Nmar_0427. DR KEGG; nmr:Nmar_0427; -. DR eggNOG; arCOG00780; Archaea. DR eggNOG; COG1727; LUCA. DR HOGENOM; HOG000225300; -. DR KO; K02883; -. DR OMA; VAAWKFS; -. DR BioCyc; NMAR436308:GI3J-445-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00329; Ribosomal_L18e; 1. DR InterPro; IPR001196; Ribosomal_L15_CS. DR InterPro; IPR000039; Ribosomal_L18e. DR InterPro; IPR021131; Ribosomal_L18e/L15P. DR InterPro; IPR022947; Ribosomal_L18e_arc. DR PANTHER; PTHR10934; PTHR10934; 1. DR Pfam; PF17135; Ribosomal_L18; 1. DR SUPFAM; SSF52080; SSF52080; 1. DR PROSITE; PS00475; RIBOSOMAL_L15; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00329, KW ECO:0000313|EMBL:ABX12323.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00329, KW ECO:0000313|EMBL:ABX12323.1}. SQ SEQUENCE 115 AA; 12349 MW; B2BD97C5FF88D9C0 CRC64; MTNQVVIRMA KDLKSASAKN DAPIWAKLAE YALKPSIARR DINLNKIAKL TKENDTVVFP GKVLGTGNVP HKITLCSFSI SNSAATKIIE NGGKLISYSE LIEQNPTGKG VVLLG // ID A9A2F9_NITMS Unreviewed; 380 AA. AC A9A2F9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE RecName: Full=DNA primase DnaG {ECO:0000256|HAMAP-Rule:MF_00007, ECO:0000256|SAAS:SAAS00498814}; DE EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00007, ECO:0000256|SAAS:SAAS00498812}; GN Name=dnaG {ECO:0000256|HAMAP-Rule:MF_00007}; GN OrderedLocusNames=Nmar_1302 {ECO:0000313|EMBL:ABX13198.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13198.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13198.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13198.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00007}; CC Note=Binds two Mg(2+) per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00007}; CC -!- SIMILARITY: Belongs to the archaeal DnaG primase family. CC {ECO:0000256|HAMAP-Rule:MF_00007, ECO:0000256|SAAS:SAAS00543015}. CC -!- SIMILARITY: Contains 1 Toprim domain. {ECO:0000256|HAMAP- CC Rule:MF_00007}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13198.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2F9; -. DR STRING; 436308.Nmar_1302; -. DR EnsemblBacteria; ABX13198; ABX13198; Nmar_1302. DR KEGG; nmr:Nmar_1302; -. DR eggNOG; arCOG04281; Archaea. DR eggNOG; COG0358; LUCA. DR HOGENOM; HOG000105364; -. DR OMA; EMELIEY; -. DR BioCyc; NMAR436308:GI3J-1335-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW. DR GO; GO:1990077; C:primosome complex; IEA:UniProtKB-KW. DR GO; GO:0003896; F:DNA primase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008143; F:poly(A) binding; IEA:InterPro. DR HAMAP; MF_00007; DNA_primase_DnaG_arc; 1. DR InterPro; IPR020607; Primase_DnaG_arc. DR InterPro; IPR006171; Toprim_domain. DR Pfam; PF13662; Toprim_4; 1. DR SMART; SM00493; TOPRIM; 1. DR PROSITE; PS50880; TOPRIM; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA replication {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498804}; KW DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498806}; KW Exosome {ECO:0000256|HAMAP-Rule:MF_00007}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498807}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498801}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498808}; KW Primosome {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498805}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498806}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00007, KW ECO:0000256|SAAS:SAAS00498808}. FT DOMAIN 170 247 Toprim. {ECO:0000259|PROSITE:PS50880}. FT METAL 176 176 Magnesium 1; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_00007}. FT METAL 219 219 Magnesium 1; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_00007}. FT METAL 219 219 Magnesium 2. {ECO:0000256|HAMAP- FT Rule:MF_00007}. FT METAL 221 221 Magnesium 2. {ECO:0000256|HAMAP- FT Rule:MF_00007}. SQ SEQUENCE 380 AA; 40929 MW; 93B98F59BA6C6B5B CRC64; MPQSGIVKYH VKLSYEVDGL VERADIIGAI FGQTEGLLGP EMNLNELQRV SKVGRIEVSA RTTANTTAGD ALIPMSTDID TCALIAAGIE SIDKVGPFDC KFTLEAIDDV RAAKKDDIVK RAKEIKQKWA TKTVSEGESM LNDVHQGDSK KLTTYGPSKL TCSSGLADSN WVILVEGRAD VINLLRAGYD NALAIEGAKI DESIKELCNS KETVVAFLDG DRAGGFILKE LKSVVPIDYE LRADNDVEVE ELTPQRIDEI LSPVAEEIKG GKPAPTLQNE DDKPLAEMAA KVFPNLNETL EAVALDGDNN EIFKVPISEV VSKLSTQSGI KYLLLDGIIT QRLLEGAKNA GIECVVGHRV AKLSNSDGMT LKTFGDLGVA // ID A9A5T4_NITMS Unreviewed; 344 AA. AC A9A5T4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 61. DE SubName: Full=Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ABX13089.1}; GN OrderedLocusNames=Nmar_1193 {ECO:0000313|EMBL:ABX13089.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13089.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13089.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13089.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|RuleBase:RU361277}; CC -!- SIMILARITY: Belongs to the zinc-containing alcohol dehydrogenase CC family. {ECO:0000256|RuleBase:RU361277}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13089.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5T4; -. DR STRING; 436308.Nmar_1193; -. DR EnsemblBacteria; ABX13089; ABX13089; Nmar_1193. DR KEGG; nmr:Nmar_1193; -. DR eggNOG; arCOG01455; Archaea. DR eggNOG; COG1064; LUCA. DR HOGENOM; HOG000294685; -. DR KO; K13953; -. DR OMA; GHENLCS; -. DR BioCyc; NMAR436308:GI3J-1226-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.180.10; -; 1. DR InterPro; IPR013149; ADH_C. DR InterPro; IPR013154; ADH_N. DR InterPro; IPR002085; ADH_SF_Zn-type. DR InterPro; IPR002328; ADH_Zn_CS. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020843; PKS_ER. DR PANTHER; PTHR11695; PTHR11695; 1. DR Pfam; PF08240; ADH_N; 1. DR Pfam; PF00107; ADH_zinc_N; 1. DR SMART; SM00829; PKS_ER; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00059; ADH_ZINC; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|RuleBase:RU361277}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|RuleBase:RU361277}. SQ SEQUENCE 344 AA; 37474 MW; C66F6BC553BE5371 CRC64; MDKMRAMVLS ECAAIETNPL KLTEIDRHKI ERSNEILLKI EACGVCHSQL HGIEGDWKDL GIPPQLPTVP GHEVVGKVVE IGSGVTKFKV GDRAGITPLL EACKECQYCK EGKEYLCESS IILGETLKGG YSEYVTVTED FATKVPDSMK PEYAAPLFCA GITAYKAVKA AEPQTHKKIG IFGIGGVGHM AVQFAKVQDC EVIAFSRSQS HLDVAKKLGA IDAIQFSENQ EEFLEKLKEK HGLLDAAIVF APADIITDTA IRAIKKGGMV VIATIGENPS FVAFEEKTIR GTLIGSTKDM EEVIKTCNEK NIEVVSEVFP LEDANKVLKK LKDSEIEARA VLIP // ID A9A1E3_NITMS Unreviewed; 426 AA. AC A9A1E3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=ERF1 domain 2 protein {ECO:0000313|EMBL:ABX12778.1}; GN OrderedLocusNames=Nmar_0882 {ECO:0000313|EMBL:ABX12778.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12778.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12778.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12778.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12778.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1E3; -. DR STRING; 436308.Nmar_0882; -. DR EnsemblBacteria; ABX12778; ABX12778; Nmar_0882. DR KEGG; nmr:Nmar_0882; -. DR eggNOG; arCOG01742; Archaea. DR eggNOG; COG1503; LUCA. DR HOGENOM; HOG000224682; -. DR KO; K03265; -. DR OMA; FHTGPLG; -. DR BioCyc; NMAR436308:GI3J-910-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0016149; F:translation release factor activity, codon specific; IEA:InterPro. DR Gene3D; 3.30.1330.30; -; 1. DR Gene3D; 3.30.960.10; -; 1. DR InterPro; IPR005140; eRF1_1_Pelota. DR InterPro; IPR005141; eRF1_2. DR InterPro; IPR005142; eRF1_3. DR InterPro; IPR029064; L30e-like. DR InterPro; IPR004403; Peptide_chain-rel_eRF1/aRF1. DR InterPro; IPR024049; Release_factor_eRF1/aRF1_N. DR PANTHER; PTHR10113; PTHR10113; 1. DR Pfam; PF03463; eRF1_1; 1. DR Pfam; PF03464; eRF1_2; 1. DR Pfam; PF03465; eRF1_3; 1. DR SMART; SM01194; eRF1_1; 1. DR SUPFAM; SSF55315; SSF55315; 1. DR SUPFAM; SSF55481; SSF55481; 1. DR TIGRFAMs; TIGR03676; aRF1/eRF1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 426 AA; 47550 MW; 73E0FCB0240F4265 CRC64; MGKIDIEKQD SVKVYKIRKT LEELSKKSGR GTELITVYIP KGKQLHEIIG TLQQEQGTAD NIKSDLTRSH VVDSLGKVVQ RLKLYKKTPE RGLVMFCGAL PPEEGGPLGS EVVKVWEIDP PKDLNQYLYR CDDHFHVDIL KDMLKDDNLI GFLAIDSKDA GWGLLHGDKI EVLAQTGSGV AGKHRQGGQS AKRFQKLREM ELTYYFNRVA QTTREYFIDI YPVKGLVISG PGPTKEDFIN GNYLEYRLQN NIIATIDSSY SGSEGIREAF AKSSDILGNF RLVEEKKLVE ALFREINGNT GKGSYGLQEV IDFLKNNVVE TLIITDNTNL NRVEGICKRC KHLQEDIVER PDVIPKKTEY SSKPCPGCNA MEVEVNEQDI VDYLELIASK TGSQLEVVSG SAEHGNMLAS LGKIGAILRY NPGHSK // ID A9A3L0_NITMS Unreviewed; 530 AA. AC A9A3L0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE SubName: Full=Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ABX12942.1}; GN OrderedLocusNames=Nmar_1046 {ECO:0000313|EMBL:ABX12942.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12942.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12942.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12942.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12942.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3L0; -. DR STRING; 436308.Nmar_1046; -. DR EnsemblBacteria; ABX12942; ABX12942; Nmar_1046. DR KEGG; nmr:Nmar_1046; -. DR eggNOG; arCOG02322; Archaea. DR eggNOG; arCOG02364; Archaea. DR eggNOG; ENOG4111VB2; LUCA. DR BioCyc; NMAR436308:GI3J-1077-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR000014; PAS. DR InterPro; IPR013767; PAS_fold. DR InterPro; IPR029151; Sensor-like. DR Pfam; PF00672; HAMP; 1. DR Pfam; PF00989; PAS; 1. DR SMART; SM00304; HAMP; 1. DR SUPFAM; SSF103190; SSF103190; 1. DR SUPFAM; SSF55785; SSF55785; 1. DR TIGRFAMs; TIGR00229; sensory_box; 1. DR PROSITE; PS50885; HAMP; 1. DR PROSITE; PS50112; PAS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 339 391 HAMP. {ECO:0000259|PROSITE:PS50885}. FT DOMAIN 424 462 PAS (PER-ARNT-SIM). FT {ECO:0000259|PROSITE:PS50112}. SQ SEQUENCE 530 AA; 61252 MW; 547F8CFC46BB5158 CRC64; MKLFYRNAIV LSTLNIAVVL ILAGIVFESI KNDKVENILS EKQFEINFKA ADFRDLVRSN IEQTKLLSIM PEIQGIVKFT DYGSSGSFQF DEGFWSELLE EKFTEIIKNN PNIHQIQIFS FNGNEIIHIF SENSGLHVED SNELKHSMSN DVLQKVTKLQ NNEVEISSIK LSEVNNKIEV PHKPILEVTT PIFLSNDEQL GYLKITYDMQ DFLYELSQSA SGKMLTIDNK GYFIDHPDKS KIFGDKLGTG INYFSDQPEL KKNLEISDNK FHYDEDEQEY RIWNKISYDK NDTSNYWVVV SVTTEEELFL SVEQLRSDVQ LVMIPFLAIT IVVTIIISRH MSKPIEVLTE KILKIKKGES GDLINIKGNN EISQLGNAFN KMTKSLSQSQ HTLKEYEQAM KSSLADAKKF YNQIDQSTAI SKFDINGDLT YVNEKFCKMT KYTKEELMGQ NQKILRSGYH DEKFYREMWK TILSGKIWTG NLKNKAKDGS YFWEKKIIIP DENSENEIIG FLAIQIDIQD LMEKNSKDWT // ID A9A435_NITMS Unreviewed; 586 AA. AC A9A435; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE SubName: Full=Glucosamine--fructose-6-phosphate aminotransferase, isomerizing {ECO:0000313|EMBL:ABX12219.1}; GN OrderedLocusNames=Nmar_0323 {ECO:0000313|EMBL:ABX12219.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12219.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12219.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12219.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12219.1; -; Genomic_DNA. DR ProteinModelPortal; A9A435; -. DR STRING; 436308.Nmar_0323; -. DR EnsemblBacteria; ABX12219; ABX12219; Nmar_0323. DR KEGG; nmr:Nmar_0323; -. DR eggNOG; arCOG00057; Archaea. DR eggNOG; COG0449; LUCA. DR HOGENOM; HOG000258896; -. DR KO; K00820; -. DR OMA; GEFFCAS; -. DR BioCyc; NMAR436308:GI3J-338-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro. DR GO; GO:0004360; F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity; IEA:InterPro. DR GO; GO:1901137; P:carbohydrate derivative biosynthetic process; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.60.20.10; -; 1. DR InterPro; IPR017932; GATase_2_dom. DR InterPro; IPR005855; GlmS_trans. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR001347; SIS. DR PANTHER; PTHR10937:SF0; PTHR10937:SF0; 1. DR Pfam; PF01380; SIS; 2. DR SUPFAM; SSF56235; SSF56235; 1. DR TIGRFAMs; TIGR01135; glmS; 1. DR PROSITE; PS51278; GATASE_TYPE_2; 1. DR PROSITE; PS51464; SIS; 2. PE 4: Predicted; KW Aminotransferase {ECO:0000313|EMBL:ABX12219.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12219.1}. FT DOMAIN 2 217 Glutamine amidotransferase type-2. FT {ECO:0000259|PROSITE:PS51278}. FT DOMAIN 277 416 SIS. {ECO:0000259|PROSITE:PS51464}. FT DOMAIN 439 576 SIS. {ECO:0000259|PROSITE:PS51464}. SQ SEQUENCE 586 AA; 64798 MW; 5EA923AC36760E95 CRC64; MCSIIGYYGK ETAAPIIVKG LKRMEYRGYD SVGVATESEN QIGLKKGTGK VQEVNSKVQL ETLPGRVGIG HTRWATHGKV TDVNAHPHPS NSGKIAIVHN GIIENFEELK KELESDGYVF KSETDSEIIS NLLQKHHDQT KNVKETILKT VSQLKGHYSF VAMFEDGQLA AARFHEPLII GVGKDDYFLS SDVLGFIEFT DNAIYMENGT FVIFDKNKFQ ISDFNGEQTG YEITKVSKEF GDAYKGDYAH FTLKEIYEQP ETILKAGEKT SSEIEAATDY IRQAKNIYIT GSGTSYNSAL IAKQILSKYV KIKTESIMSS ELQFDPNIIE ENSILIAISQ SGESADVLEA VKIAKNANCK IIAIVNLVTS SLAREADVVI GLNCGPEIGV AATKSFTSQL VILYKIVQKL SNNDITINFE DFSKSISKTL DNPTNIQKIA KELKEISDIY ILGRGINYPI ATESALKLKE LTYIHAEGIA GGELKHGPLA LMDSNVFVII LNPNDSTYSD TLTSAREIKA RGAKIIGVSD VKSDVYDYWI EMPKINEVLY PISEIIPIQL LSYYAALEKD TDPDYPRNLA KSVTVK // ID A9A588_NITMS Unreviewed; 134 AA. AC A9A588; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Ribosomal protein L32e {ECO:0000313|EMBL:ABX12287.1}; GN OrderedLocusNames=Nmar_0391 {ECO:0000313|EMBL:ABX12287.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12287.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12287.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12287.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12287.1; -; Genomic_DNA. DR ProteinModelPortal; A9A588; -. DR STRING; 436308.Nmar_0391; -. DR EnsemblBacteria; ABX12287; ABX12287; Nmar_0391. DR KEGG; nmr:Nmar_0391; -. DR eggNOG; arCOG00781; Archaea. DR eggNOG; COG1717; LUCA. DR HOGENOM; HOG000231289; -. DR KO; K02912; -. DR OMA; FKNDPKW; -. DR BioCyc; NMAR436308:GI3J-408-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR InterPro; IPR001515; Ribosomal_L32e. DR InterPro; IPR018263; Ribosomal_L32e_CS. DR Pfam; PF01655; Ribosomal_L32e; 1. DR ProDom; PD003823; Ribosomal_L32e; 1. DR SMART; SM01393; Ribosomal_L32e; 1. DR SUPFAM; SSF52042; SSF52042; 1. DR PROSITE; PS00580; RIBOSOMAL_L32E; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12287.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX12287.1}. SQ SEQUENCE 134 AA; 15338 MW; 285FFF72FF8016F6 CRC64; MPINKDKIAK RQEIKEHNPD FERPESWRYV RLQTGWRKPK GIDHHQRKQW SRGRPGLVKV GFGGPKDARG LHPSGFTDNL VYNLDDLAKL DPKKDGVRLG HSVGTRKRKE IVTKAVEQKF KIFNARVSAS GSKS // ID A9A4W6_NITMS Unreviewed; 79 AA. AC A9A4W6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13420.1}; GN OrderedLocusNames=Nmar_1524 {ECO:0000313|EMBL:ABX13420.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13420.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13420.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13420.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13420.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4W6; -. DR STRING; 436308.Nmar_1524; -. DR EnsemblBacteria; ABX13420; ABX13420; Nmar_1524. DR KEGG; nmr:Nmar_1524; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000225449; -. DR OMA; FVYGPYD; -. DR BioCyc; NMAR436308:GI3J-1566-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 73 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 79 AA; 8694 MW; 3644C33FE4F8C18B CRC64; MATAYVLINC ELGSEEAVIS ELKSIEGVVE VHGTFGAYDI LAKVESSQVE ALRETITWKI RKIPKIRSTL TLMGIEGQQ // ID A9A2Z5_NITMS Unreviewed; 66 AA. AC A9A2Z5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE RecName: Full=50S ribosomal protein L24e {ECO:0000256|HAMAP-Rule:MF_00773}; GN Name=rpl24e {ECO:0000256|HAMAP-Rule:MF_00773}; GN OrderedLocusNames=Nmar_0227 {ECO:0000313|EMBL:ABX12123.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12123.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12123.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12123.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000256|HAMAP- CC Rule:MF_00773}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00773}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00773}; CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with CC proteins L3 and L14. {ECO:0000256|HAMAP-Rule:MF_00773}. CC -!- SIMILARITY: Belongs to the ribosomal protein L24e family. CC {ECO:0000256|HAMAP-Rule:MF_00773, ECO:0000256|SAAS:SAAS00539583}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12123.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z5; -. DR STRING; 436308.Nmar_0227; -. DR EnsemblBacteria; ABX12123; ABX12123; Nmar_0227. DR KEGG; nmr:Nmar_0227; -. DR eggNOG; arCOG01950; Archaea. DR eggNOG; COG2075; LUCA. DR HOGENOM; HOG000105759; -. DR KO; K02896; -. DR OMA; TVLRFCS; -. DR BioCyc; NMAR436308:GI3J-233-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.170.20; -; 1. DR HAMAP; MF_00773; Ribosomal_L24e; 1. DR InterPro; IPR023438; Ribosomal_L24e. DR InterPro; IPR000988; Ribosomal_L24e-rel. DR InterPro; IPR023441; Ribosomal_L24e_dom. DR InterPro; IPR011017; TRASH_dom. DR PANTHER; PTHR10792; PTHR10792; 1. DR Pfam; PF01246; Ribosomal_L24e; 1. DR SMART; SM00746; TRASH; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00773}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00773, KW ECO:0000313|EMBL:ABX12123.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00773, KW ECO:0000313|EMBL:ABX12123.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00773}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00773}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00773}; KW Zinc-finger {ECO:0000256|HAMAP-Rule:MF_00773}. FT ZN_FING 8 38 C4-type. {ECO:0000256|HAMAP- FT Rule:MF_00773}. FT METAL 8 8 Zinc. {ECO:0000256|HAMAP-Rule:MF_00773}. FT METAL 11 11 Zinc. {ECO:0000256|HAMAP-Rule:MF_00773}. FT METAL 34 34 Zinc. {ECO:0000256|HAMAP-Rule:MF_00773}. FT METAL 38 38 Zinc. {ECO:0000256|HAMAP-Rule:MF_00773}. SQ SEQUENCE 66 AA; 7519 MW; F785A369EDF40E2C CRC64; MSLLVKPCNF CNRPVAKGSG TMLAKNDGTV LWFCSAKCKK NALELKRDPR KFKWTKKYVK GGIRKK // ID A9A5T8_NITMS Unreviewed; 76 AA. AC A9A5T8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13093.1}; GN OrderedLocusNames=Nmar_1197 {ECO:0000313|EMBL:ABX13093.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13093.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13093.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13093.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13093.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5T8; -. DR STRING; 436308.Nmar_1197; -. DR EnsemblBacteria; ABX13093; ABX13093; Nmar_1197. DR KEGG; nmr:Nmar_1197; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000225449; -. DR BioCyc; NMAR436308:GI3J-1230-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 16 75 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 76 AA; 8840 MW; 65146B741BD9B62B CRC64; MEKSYMLISC EMGEEQLLYS QLKEIPEVKN CLVTFGSYDV VAEFETDNQS QMNEVITTKI RKLKKIRSTI TLRAMN // ID A9A3Y6_NITMS Unreviewed; 490 AA. AC A9A3Y6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Glutamine synthetase, type I {ECO:0000313|EMBL:ABX13686.1}; GN OrderedLocusNames=Nmar_1790 {ECO:0000313|EMBL:ABX13686.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13686.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13686.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13686.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the glutamine synthetase family. CC {ECO:0000256|RuleBase:RU000384}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13686.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Y6; -. DR STRING; 436308.Nmar_1790; -. DR EnsemblBacteria; ABX13686; ABX13686; Nmar_1790. DR KEGG; nmr:Nmar_1790; -. DR eggNOG; arCOG01909; Archaea. DR eggNOG; COG0174; LUCA. DR HOGENOM; HOG000005157; -. DR KO; K01915; -. DR OMA; VIEKWIE; -. DR BioCyc; NMAR436308:GI3J-1838-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004356; F:glutamate-ammonia ligase activity; IEA:InterPro. DR GO; GO:0006542; P:glutamine biosynthetic process; IEA:InterPro. DR GO; GO:0009399; P:nitrogen fixation; IEA:InterPro. DR Gene3D; 3.10.20.70; -; 1. DR Gene3D; 3.30.590.10; -; 1. DR InterPro; IPR008147; Gln_synt_b-grasp. DR InterPro; IPR014746; Gln_synth/guanido_kin_cat_dom. DR InterPro; IPR008146; Gln_synth_cat_dom. DR InterPro; IPR004809; Gln_synth_I. DR InterPro; IPR027302; Gln_synth_N_conserv_site. DR Pfam; PF00120; Gln-synt_C; 1. DR Pfam; PF03951; Gln-synt_N; 1. DR SMART; SM01230; Gln-synt_C; 1. DR SUPFAM; SSF54368; SSF54368; 1. DR TIGRFAMs; TIGR00653; GlnA; 1. DR PROSITE; PS00180; GLNA_1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 490 AA; 55483 MW; 062310D91D37867D CRC64; MKHKLPYKVS HGKAIQVSYS PDEVFSRIQH EGIQFIDLQF TGLTGHFHHT TISANTFTPE QMRDGLPKLD GSSIIGFTSI DDSDLLLKPD PNTFAIIPWM TENKTARLLC DVYWGENRGR LSRDPRGISQ KAEEYIKTQG FDFSTWGPEV EFFVFDKVHW DVLTPYKGQS YSIESKEAPW NQSGDGYPMG LQEGYYPSTP ADTLTPYRNE CVNILNKNFG ILCDNHHHEV ATAGQCEIDI KYDYMTNAAD AAQSYKYVIR NVAQKYGKVA TMMPKPIAMD SGSGMHVNVS LWKGTENAFY DPDDEIELSQ LGRYFCGGII NHAKALSAIC NPTTNSYHRL VPGYEAPAYI AWSSGNRSAI VRVPKHLKGK NYANLKRLEF RAPDPSSNPY LVFAAVTAAG MDGIKKKMDP GDEVRDDIFK MTKSDRNKRG IGVLPKSLGE ALDELESDRK FLNPIYTNDV IDKIIELERR DQREISIRPH PHEFYLYFDV // ID A9A5Q7_NITMS Unreviewed; 79 AA. AC A9A5Q7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 40. DE SubName: Full=ParB domain protein nuclease {ECO:0000313|EMBL:ABX13062.1}; GN OrderedLocusNames=Nmar_1166 {ECO:0000313|EMBL:ABX13062.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13062.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13062.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13062.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13062.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Q7; -. DR STRING; 436308.Nmar_1166; -. DR EnsemblBacteria; ABX13062; ABX13062; Nmar_1166. DR KEGG; nmr:Nmar_1166; -. DR eggNOG; arCOG11113; Archaea. DR eggNOG; COG1475; LUCA. DR KO; K03497; -. DR BioCyc; NMAR436308:GI3J-1198-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR003115; ParB/Sulfiredoxin_dom. DR Pfam; PF02195; ParBc; 1. DR SMART; SM00470; ParB; 1. DR SUPFAM; SSF110849; SSF110849; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 79 AA; 8804 MW; DE291BAF2C987EA2 CRC64; MSFQKISVKN IRIGKRFRKD IGSIQLLENS IATLGLLQPI IVKQETSGAF TLLAGFRRLQ ACKSLGFEKI DAHVMGDKK // ID A9A306_NITMS Unreviewed; 163 AA. AC A9A306; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABX12134.1}; GN OrderedLocusNames=Nmar_0238 {ECO:0000313|EMBL:ABX12134.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12134.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12134.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12134.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12134.1; -; Genomic_DNA. DR ProteinModelPortal; A9A306; -. DR STRING; 436308.Nmar_0238; -. DR EnsemblBacteria; ABX12134; ABX12134; Nmar_0238. DR KEGG; nmr:Nmar_0238; -. DR eggNOG; arCOG04548; Archaea. DR eggNOG; COG1146; LUCA. DR HOGENOM; HOG000044616; -. DR OMA; WGPGRSD; -. DR BioCyc; NMAR436308:GI3J-244-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR Pfam; PF13237; Fer4_10; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 62 91 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 122 151 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 163 AA; 17717 MW; C8C86B38EC0B0F88 CRC64; MPIAENFPEG LKPLGKISDG EGHFHIMWGP GRSDAEAFSD ADVKAAYEAR GEEQVPLGVS GTMVAVDWDS CVADGACIEA CPVQVFQWYR TEKDIPAKDV VGQTFEGTGS SVKDERKDMT DKADPIREHD CIWCMACVSV CPPQAIKVDQ SNVEKHESAA KTL // ID A9A591_NITMS Unreviewed; 206 AA. AC A9A591; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE RecName: Full=Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; DE EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414}; GN OrderedLocusNames=Nmar_0394 {ECO:0000313|EMBL:ABX12290.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12290.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12290.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12290.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Destroys radicals which are normally produced within the CC cells and which are toxic to biological systems. CC {ECO:0000256|RuleBase:RU000414}. CC -!- CATALYTIC ACTIVITY: 2 superoxide + 2 H(+) = O(2) + H(2)O(2). CC {ECO:0000256|RuleBase:RU000414}. CC -!- SIMILARITY: Belongs to the iron/manganese superoxide dismutase CC family. {ECO:0000256|RuleBase:RU000414}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12290.1; -; Genomic_DNA. DR ProteinModelPortal; A9A591; -. DR SMR; A9A591; 3-206. DR STRING; 436308.Nmar_0394; -. DR EnsemblBacteria; ABX12290; ABX12290; Nmar_0394. DR KEGG; nmr:Nmar_0394; -. DR eggNOG; arCOG04147; Archaea. DR eggNOG; COG0605; LUCA. DR HOGENOM; HOG000013583; -. DR KO; K04564; -. DR OMA; VIDWVEV; -. DR BioCyc; NMAR436308:GI3J-411-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004784; F:superoxide dismutase activity; IEA:UniProtKB-EC. DR InterPro; IPR001189; Mn/Fe_SOD. DR InterPro; IPR019833; Mn/Fe_SOD_BS. DR InterPro; IPR019832; Mn/Fe_SOD_C. DR InterPro; IPR019831; Mn/Fe_SOD_N. DR PANTHER; PTHR11404; PTHR11404; 1. DR Pfam; PF02777; Sod_Fe_C; 1. DR Pfam; PF00081; Sod_Fe_N; 1. DR PIRSF; PIRSF000349; SODismutase; 1. DR PRINTS; PR01703; MNSODISMTASE. DR SUPFAM; SSF46609; SSF46609; 1. DR SUPFAM; SSF54719; SSF54719; 1. DR PROSITE; PS00088; SOD_MN; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|RuleBase:RU000414}; KW Oxidoreductase {ECO:0000256|RuleBase:RU000414, KW ECO:0000313|EMBL:ABX12290.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 92 Sod_Fe_N. {ECO:0000259|Pfam:PF00081}. FT DOMAIN 99 201 Sod_Fe_C. {ECO:0000259|Pfam:PF02777}. SQ SEQUENCE 206 AA; 23313 MW; FD2F09812CBD0C96 CRC64; MGKYTLPEMP YAYDALEPHI DARTMEIHHT KHHQTYTDKL NAALETCPAE IQDKDILDIL SDINSVPEDK RGAINFNGGG YDNHRLFWNN MKPNGGGEPG GSIADAINDS FGSFSDFKEK FSSTTAVIQG SGWGWLVYNP SSGKVEYKSM PNQTSPRTEG LVPLLGCDVW EHAYYLNYQN KRPAYIEAWW NVVNWDEVEN RFSKAK // ID A9A1G3_NITMS Unreviewed; 171 AA. AC A9A1G3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13142.1}; GN OrderedLocusNames=Nmar_1246 {ECO:0000313|EMBL:ABX13142.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13142.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13142.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13142.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13142.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1246; -. DR EnsemblBacteria; ABX13142; ABX13142; Nmar_1246. DR KEGG; nmr:Nmar_1246; -. DR BioCyc; NMAR436308:GI3J-1279-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 171 AA; 19634 MW; 5D1603F04B23B1AF CRC64; MNQQTLTSGK ENDSSFLESS SSRCFSFVFS LPNETVNTPA SDVRFVFSNT KPIDIRFFLD DNGEIHSSLR IVPESKQKTK QENMLISKKE IKENNEKTLE EIKNTSIEKI DLESTPEIPK VRKRGRPKGS KNKKTKTIPD EKKFQQEWFE TNAEFKARVA EEMKVINAQA A // ID A9A1L3_NITMS Unreviewed; 375 AA. AC A9A1L3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE SubName: Full=N-acetyl-ornithine/N-acetyl-lysine deacetylase {ECO:0000313|EMBL:ABX13192.1}; GN OrderedLocusNames=Nmar_1296 {ECO:0000313|EMBL:ABX13192.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13192.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13192.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13192.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13192.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1L3; -. DR STRING; 436308.Nmar_1296; -. DR EnsemblBacteria; ABX13192; ABX13192; Nmar_1296. DR KEGG; nmr:Nmar_1296; -. DR eggNOG; arCOG01107; Archaea. DR eggNOG; COG0624; LUCA. DR HOGENOM; HOG000105331; -. DR KO; K05831; -. DR OMA; HAHMDTV; -. DR BioCyc; NMAR436308:GI3J-1329-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0050897; F:cobalt ion binding; IEA:InterPro. DR GO; GO:0016811; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; IEA:InterPro. DR GO; GO:0008237; F:metallopeptidase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0009085; P:lysine biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.70.360; -; 1. DR InterPro; IPR001261; ArgE/DapE_CS. DR InterPro; IPR010175; DapE_lys_deAc. DR InterPro; IPR002933; Peptidase_M20. DR InterPro; IPR011650; Peptidase_M20_dimer. DR Pfam; PF07687; M20_dimer; 1. DR Pfam; PF01546; Peptidase_M20; 1. DR SUPFAM; SSF55031; SSF55031; 1. DR TIGRFAMs; TIGR01902; dapE-lys-deAc; 1. DR PROSITE; PS00758; ARGE_DAPE_CPG2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 162 267 M20_dimer. {ECO:0000259|Pfam:PF07687}. SQ SEQUENCE 375 AA; 41551 MW; BC66148E940C705A CRC64; MDTHFTVTPR FATKMLEKAL RLYTPSLSEK PMAEFLADKC DDLGFEDIQI DEVGNVIAKK GSGTPKIMLC GHMDVVPGKV KVRKEGDSLY GRGASDAKAP LMAMLFAAAS IQNNNGTIIF VGAVDEEGNA TGIKNLVKKE MGVDYAVFGE PSGIKQVTIA YKGRLAINLK VTVEDSSHAS APWLSKNAIL ESMIFARELK EKLEENQEDR TKGMLLTATM TEVKGGTSHN VTPKECETTF DIRIPVDMNC KSVEQKIANL VKEISKKREV EAFYSILDET EPFEAAHNSP LVRAFTLGVM DVEHTRPKLI RKTGTGDMNV LGTQWSIPVV TYGPGDPHEA HTIDEKVSID EYLRGIEILK KMLQHLKRLH DRKMQ // ID A9A4F5_NITMS Unreviewed; 730 AA. AC A9A4F5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 63. DE RecName: Full=Elongation factor 2 {ECO:0000256|SAAS:SAAS00088569}; GN OrderedLocusNames=Nmar_0748 {ECO:0000313|EMBL:ABX12644.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12644.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12644.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12644.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the GTP-dependent ribosomal translocation step CC during translation elongation. During this step, the ribosome CC changes from the pre-translocational (PRE) to the post- CC translocational (POST) state as the newly formed A-site-bound CC peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E CC sites, respectively. Catalyzes the coordinated movement of the two CC tRNA molecules, the mRNA and conformational changes in the CC ribosome. {ECO:0000256|SAAS:SAAS00384500}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|SAAS:SAAS00088566}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. EF-G/EF-2 CC subfamily. {ECO:0000256|SAAS:SAAS00571328}. CC -!- SIMILARITY: Contains tr-type G (guanine nucleotide-binding) CC domain. {ECO:0000256|SAAS:SAAS00088564}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12644.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4F5; -. DR STRING; 436308.Nmar_0748; -. DR EnsemblBacteria; ABX12644; ABX12644; Nmar_0748. DR KEGG; nmr:Nmar_0748; -. DR eggNOG; arCOG01559; Archaea. DR eggNOG; COG0480; LUCA. DR HOGENOM; HOG000231589; -. DR KO; K03234; -. DR OMA; FTGHVTR; -. DR BioCyc; NMAR436308:GI3J-774-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.70.240; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR HAMAP; MF_00054_A; EF_G_EF_2_A; 1. DR InterPro; IPR009022; EFG_III-V. DR InterPro; IPR000640; EFG_V. DR InterPro; IPR031157; G_TR_CS. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR004543; Transl_elong_EFG/EF2_arc. DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV. DR InterPro; IPR004161; Transl_elong_EFTu/EF1A_2. DR Pfam; PF00679; EFG_C; 1. DR Pfam; PF14492; EFG_II; 1. DR Pfam; PF03764; EFG_IV; 1. DR Pfam; PF03144; GTP_EFTU_D2; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SMART; SM00838; EFG_C; 1. DR SMART; SM00889; EFG_IV; 1. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF54980; SSF54980; 2. DR TIGRFAMs; TIGR00490; aEF-2; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS00301; G_TR_1; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|SAAS:SAAS00461328}; KW Elongation factor {ECO:0000256|SAAS:SAAS00461323, KW ECO:0000313|EMBL:ABX12644.1}; KW GTP-binding {ECO:0000256|RuleBase:RU000323, KW ECO:0000256|SAAS:SAAS00461319}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU000323, KW ECO:0000256|SAAS:SAAS00461319}; KW Protein biosynthesis {ECO:0000256|SAAS:SAAS00461323, KW ECO:0000313|EMBL:ABX12644.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 229 Tr-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51722}. SQ SEQUENCE 730 AA; 80111 MW; 8E2210BD6AF9CE9E CRC64; MVKFKSTSDV MKIIKNKDQI RNFGVIAHVD HGKTTMSDSL LAYSGIIAPS AAGKALAMDF DKEEQQRGIT IYQANVTLLF QQKDKEYVIN MIDTPGHVDF SGRVIRSLRA IDGAVVVCDA VEGIMTQTET VTRMALEERV KPVLFINKVD RLIKELRLTP EKMQAQLAEV VSNFNQLIDT YAEPEYKEKW KVSIQDASVT FGSAKDRWAI NVDLMKERGI TFKDVIDAYE NEKVADLVEK APLADAVLGM VVKHHPAPAE AVKYRIPQIW KGDLDSDVGK ALLSCSDDGP TIMMIVNMVL DPAAGPVAIG RLFSGTIKDG QTIQIIDEKR EGRVQSVNFF MGNQREQVGE LGAGNIPALL GLTEARAGNT LSTVKDIPMF EGVKYVSEPV VQVAIEPKHP KDLPKLVEVL KQLTIEDPNL VVKIDEESGE TIVAGMGVLH LDVATHRIQD AKVEIVTSEP LINYRETVKA GCEPIMAKSP NRHNKIFMKV EPLEPEIATM LRTGEISDMK DKKVVSDLLK GAGWDTDTIK RVMKFDSRGN VLINGTKGVQ FVQESTDSIN SGFDEVMKEG PLCKEQMRDC KFTFTHFVPH EDTAHRGLSQ LGPASRRACM GALLTAGTAV LEPTLAIEVR VPTDLVGNVA TVLSGKRGKV LDMAQKGASS IVTGEIPASE TFTLSEEMRG QTAGRATWNT SFKAWTEVPK SMLSAAVSDI RKRKGLAPDP PGANEFIDKE // ID A9A1F3_NITMS Unreviewed; 62 AA. AC A9A1F3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE RecName: Full=Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; GN Name=spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; GN OrderedLocusNames=Nmar_1236 {ECO:0000313|EMBL:ABX13132.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13132.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13132.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13132.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Stimulates transcription elongation. {ECO:0000256|HAMAP- CC Rule:MF_00949}. CC -!- SUBUNIT: Heterodimer composed of Spt4 and Spt5. CC {ECO:0000256|HAMAP-Rule:MF_00949}. CC -!- SIMILARITY: Belongs to the archaeal Spt4 family. CC {ECO:0000256|HAMAP-Rule:MF_00949}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13132.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1F3; -. DR STRING; 436308.Nmar_1236; -. DR EnsemblBacteria; ABX13132; ABX13132; Nmar_1236. DR KEGG; nmr:Nmar_1236; -. DR eggNOG; arCOG04077; Archaea. DR eggNOG; COG2093; LUCA. DR HOGENOM; HOG000229326; -. DR KO; K03050; -. DR OMA; MYAIKVR; -. DR BioCyc; NMAR436308:GI3J-1269-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00949; Spt4_arch; 1. DR InterPro; IPR029040; RPABC4/Spt4. DR InterPro; IPR022800; Spt4/RpoE2_Znf. DR InterPro; IPR007178; Spt4_arch. DR Pfam; PF06093; Spt4; 1. DR ProDom; PD019197; DNA-dir_RNA_pol_RpoE2_arc; 1. DR SMART; SM01389; Spt4; 1. DR SUPFAM; SSF63393; SSF63393; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-directed RNA polymerase {ECO:0000313|EMBL:ABX13132.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00949}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00949, KW ECO:0000313|EMBL:ABX13132.1}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00949}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00949}. FT METAL 7 7 Zinc. {ECO:0000256|HAMAP-Rule:MF_00949}. FT METAL 10 10 Zinc. {ECO:0000256|HAMAP-Rule:MF_00949}. FT METAL 19 19 Zinc. {ECO:0000256|HAMAP-Rule:MF_00949}. FT METAL 22 22 Zinc. {ECO:0000256|HAMAP-Rule:MF_00949}. SQ SEQUENCE 62 AA; 6735 MW; 19C8BC19428D3567 CRC64; MAREMACRKC KYVTVGKVCP VCKSSDLTPD WSGVVLVVDP TNSEISKTLG ITQKGKYAIK VT // ID A9A146_NITMS Unreviewed; 398 AA. AC A9A146; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Peptidase M50 {ECO:0000313|EMBL:ABX12007.1}; GN OrderedLocusNames=Nmar_0107 {ECO:0000313|EMBL:ABX12007.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12007.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12007.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12007.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12007.1; -; Genomic_DNA. DR ProteinModelPortal; A9A146; -. DR STRING; 436308.Nmar_0107; -. DR EnsemblBacteria; ABX12007; ABX12007; Nmar_0107. DR KEGG; nmr:Nmar_0107; -. DR eggNOG; arCOG04064; Archaea. DR eggNOG; COG0750; LUCA. DR HOGENOM; HOG000105029; -. DR OMA; TIPLWYG; -. DR BioCyc; NMAR436308:GI3J-110-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR Gene3D; 2.30.42.10; -; 1. DR InterPro; IPR001193; MBTPS2. DR InterPro; IPR001478; PDZ. DR InterPro; IPR008915; Peptidase_M50. DR PANTHER; PTHR13325; PTHR13325; 1. DR Pfam; PF13180; PDZ_2; 1. DR Pfam; PF02163; Peptidase_M50; 2. DR PRINTS; PR01000; SREBPS2PTASE. DR SMART; SM00228; PDZ; 1. DR SUPFAM; SSF50156; SSF50156; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 66 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 106 131 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 181 206 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 326 348 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 369 391 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 203 278 PDZ (DHR). {ECO:0000259|SMART:SM00228}. SQ SEQUENCE 398 AA; 43969 MW; 8A68B10FAFB58DA8 CRC64; MELDFITQNS IIYVLMAWVV IVIVAKGLKL EKHGFEIKAY SLTYKNKQVN SVLLKLLSRT RRGIRVFADV SVISGFIMMG FAFWFLLNNV ANFFVAQTEF SELTVLIPGV TLTSAASITY FLLSIPVVLV IHEGAHGIVA ALEKIKIKTG GFAIFIAMFA GFVEPDEEEF NKAKKISKLR VIGAGATSNV IFAFALGVIL LTNPFFAMVL PEPLLSTFYE LPEGVLILSI IENSGAEQAG LLANDIITSI NDKSILSPAD FPSLNPGETA SVSVLRDGQP LDFSLEVMPA PDDPERGLIG IMRDNSFAYK PILNFIEWND PNVSMFLLWL WMISFFIGII NMLPLPILDG GKFIHTIIDQ RISEKAVNGV MWGIYAFTFA LFGLNIALSY VKSGWFTI // ID A9A1E0_NITMS Unreviewed; 71 AA. AC A9A1E0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12775.1}; GN OrderedLocusNames=Nmar_0879 {ECO:0000313|EMBL:ABX12775.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12775.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12775.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12775.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12775.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0879; -. DR EnsemblBacteria; ABX12775; ABX12775; Nmar_0879. DR KEGG; nmr:Nmar_0879; -. DR eggNOG; arCOG08746; Archaea. DR eggNOG; ENOG4110ZWF; LUCA. DR HOGENOM; HOG000218929; -. DR OMA; HELTHDM; -. DR BioCyc; NMAR436308:GI3J-907-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR012667; CbtB_put. DR Pfam; PF09489; CbtB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 17 35 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 71 AA; 7877 MW; E0928BAD2445038F CRC64; MSETRQMNVS KSQVPKLAII ALGIIFAAGL FVVGFDQGHI FSLVYGEQAF TDLYIHELTH DMRHAAGFPC H // ID A9A322_NITMS Unreviewed; 178 AA. AC A9A322; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12150.1}; GN OrderedLocusNames=Nmar_0254 {ECO:0000313|EMBL:ABX12150.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12150.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12150.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12150.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12150.1; -; Genomic_DNA. DR ProteinModelPortal; A9A322; -. DR STRING; 436308.Nmar_0254; -. DR EnsemblBacteria; ABX12150; ABX12150; Nmar_0254. DR KEGG; nmr:Nmar_0254; -. DR eggNOG; arCOG02966; Archaea. DR eggNOG; COG1413; LUCA. DR BioCyc; NMAR436308:GI3J-262-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.10.10; -; 1. DR InterPro; IPR011989; ARM-like. DR InterPro; IPR016024; ARM-type_fold. DR InterPro; IPR021133; HEAT_type_2. DR SUPFAM; SSF48371; SSF48371; 1. DR PROSITE; PS50077; HEAT_REPEAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 178 AA; 19864 MW; 9BB46AB24ED50B23 CRC64; MENIVKVLES GSSEEKIKIL ETLDKTDSPE ILEKIISKLD DDDIKVRGEA FSSLVLNKNK ISDFLIQNLN STSKNIRGFV ALALANRNET DAIPNITKLA KDERSMVRSC AIGALNHLKA KVAKEIFLES VLDTNVEVRK SAVHAIINLK FSISEERIKE ISKDADSELL KMLSKLKK // ID A9A3E5_NITMS Unreviewed; 121 AA. AC A9A3E5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12877.1}; GN OrderedLocusNames=Nmar_0981 {ECO:0000313|EMBL:ABX12877.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12877.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12877.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12877.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12877.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0981; -. DR EnsemblBacteria; ABX12877; ABX12877; Nmar_0981. DR KEGG; nmr:Nmar_0981; -. DR eggNOG; arCOG05491; Archaea. DR eggNOG; ENOG410ZB8B; LUCA. DR OMA; YTTAEHH; -. DR BioCyc; NMAR436308:GI3J-1009-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 121 AA; 13908 MW; 79037711B00AB3FB CRC64; MENFEGFYHD LLDLAKKYET KNIPLKIEKD LDNDIVKIFG EKITSLARAQ NGLNDVTELS YTTAEHHPYW NLLYNSSEIA TSVLEKWKGS LSDEDVADIE WAIKELIESL EKIKNKTNAD S // ID A9A3K2_NITMS Unreviewed; 217 AA. AC A9A3K2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12934.1}; GN OrderedLocusNames=Nmar_1038 {ECO:0000313|EMBL:ABX12934.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12934.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12934.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12934.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12934.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3K2; -. DR STRING; 436308.Nmar_1038; -. DR EnsemblBacteria; ABX12934; ABX12934; Nmar_1038. DR KEGG; nmr:Nmar_1038; -. DR eggNOG; arCOG02640; Archaea. DR eggNOG; COG1392; LUCA. DR HOGENOM; HOG000107802; -. DR KO; K07220; -. DR OMA; LIMNREN; -. DR BioCyc; NMAR436308:GI3J-1069-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR018445; Put_Phosphate_transp_reg. DR Pfam; PF01865; PhoU_div; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 47 74 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 217 AA; 24581 MW; 0312AE780231D5A5 CRC64; MYSGELEVQA KRKAIAVLQD EINRILNASR ELATLPELMM KKDKTGIKNT LEQISTIEEE VENLRRKITR EVADVGGLIM NRENLLNTAY TMDEIAGYIT GISFKLSNVK PTTLKSAKLD KDLTKLIELV VDEVYKLNEI IRSLNTNTAS AIELAQETQT IEREIDIKYR QATIKLLTEV TNTKELMLMK DVIEGIEEMA DKCQRVSDSF ILLALSL // ID A9A419_NITMS Unreviewed; 89 AA. AC A9A419; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 45. DE RecName: Full=UPF0147 protein Nmar_0307 {ECO:0000256|HAMAP-Rule:MF_00342}; GN OrderedLocusNames=Nmar_0307 {ECO:0000313|EMBL:ABX12203.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12203.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12203.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12203.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the UPF0147 family. {ECO:0000256|HAMAP- CC Rule:MF_00342}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12203.1; -; Genomic_DNA. DR ProteinModelPortal; A9A419; -. DR STRING; 436308.Nmar_0307; -. DR EnsemblBacteria; ABX12203; ABX12203; Nmar_0307. DR KEGG; nmr:Nmar_0307; -. DR eggNOG; arCOG04308; Archaea. DR eggNOG; COG1698; LUCA. DR HOGENOM; HOG000230151; -. DR KO; K09721; -. DR OMA; ANDNSVP; -. DR BioCyc; NMAR436308:GI3J-321-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.20.1440.50; -; 1. DR HAMAP; MF_00342; UPF0147; 1. DR InterPro; IPR023130; Ta0600-like_domain. DR InterPro; IPR005354; UPF0147. DR Pfam; PF03685; UPF0147; 1. DR ProDom; PD029943; UPF0147; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 89 AA; 10013 MW; 4FD3DBE7E41BAF2E CRC64; MADEQQNKES MKEAIETLNQ IIGSNSTPKT IKKSITDLIA DLNNEEYSLS VRAANTISLL DDVTQDPNMP SYVRTQLWQA VSKLESIRE // ID A9A2B9_NITMS Unreviewed; 138 AA. AC A9A2B9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12830.1}; GN OrderedLocusNames=Nmar_0934 {ECO:0000313|EMBL:ABX12830.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12830.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12830.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12830.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12830.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0934; -. DR EnsemblBacteria; ABX12830; ABX12830; Nmar_0934. DR KEGG; nmr:Nmar_0934; -. DR eggNOG; arCOG00017; Archaea. DR eggNOG; COG2522; LUCA. DR HOGENOM; HOG000105782; -. DR KO; K07108; -. DR OMA; CKECENM; -. DR BioCyc; NMAR436308:GI3J-962-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR Gene3D; 1.10.260.40; -; 1. DR InterPro; IPR010982; Lambda_DNA-bd_dom. DR SUPFAM; SSF47413; SSF47413; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 138 AA; 15209 MW; 056800823413265E CRC64; MLLPAEIESK TLIPALRAIL AKKLAEDHNI REDEISKMLG VTQAAVSNYI RGTRGDPSLI AKLLAEKQVA DMIDELSDNL SSDMAYTPSS LSKFIGLCNY IKSSLLICEI HHNLESDIDE QVCKECENML LKGPGSVY // ID A9A1F2_NITMS Unreviewed; 198 AA. AC A9A1F2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=DNA-directed RNA polymerase {ECO:0000313|EMBL:ABX13131.1}; GN OrderedLocusNames=Nmar_1235 {ECO:0000313|EMBL:ABX13131.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13131.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13131.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13131.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13131.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1F2; -. DR STRING; 436308.Nmar_1235; -. DR EnsemblBacteria; ABX13131; ABX13131; Nmar_1235. DR KEGG; nmr:Nmar_1235; -. DR eggNOG; arCOG00675; Archaea. DR eggNOG; COG1095; LUCA. DR HOGENOM; HOG000229315; -. DR KO; K03049; -. DR OMA; YKRVRLK; -. DR BioCyc; NMAR436308:GI3J-1268-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.30.1490.120; -; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR005576; RNA_pol_Rpb7_N. DR InterPro; IPR004519; RNAP_E/RPC8. DR InterPro; IPR022967; S1_dom. DR InterPro; IPR003029; S1_domain. DR Pfam; PF00575; S1; 1. DR Pfam; PF03876; SHS2_Rpb7-N; 1. DR SMART; SM00316; S1; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF88798; SSF88798; 1. DR TIGRFAMs; TIGR00448; rpoE; 1. DR PROSITE; PS50126; S1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-directed RNA polymerase {ECO:0000313|EMBL:ABX13131.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000313|EMBL:ABX13131.1}. FT DOMAIN 82 165 S1 motif. {ECO:0000259|PROSITE:PS50126}. SQ SEQUENCE 198 AA; 21458 MW; 83D7A47159E4317E CRC64; MFSISTLVDV VRIPPSLFGT TLKKAAVNIL KEKYESMINA DLGYIIMILD AKVDEMGKMI AGDGGTFHRV QFEALTFYPK LQEIVQGEIV DITDFGAFVR IGPTDALLHL SQVMDDYLKS DVKSGMILAN QSGRTLKVGS TLRARITAVS LGKAAAMGKI GITCRQPFLG ADEWIEEEIK KSSGGAEEPA KEAKVEAS // ID A9A177_NITMS Unreviewed; 473 AA. AC A9A177; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12363.1}; GN OrderedLocusNames=Nmar_0467 {ECO:0000313|EMBL:ABX12363.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12363.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12363.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12363.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12363.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12363; ABX12363; Nmar_0467. DR KEGG; nmr:Nmar_0467; -. DR eggNOG; arCOG08733; Archaea. DR eggNOG; ENOG41110SI; LUCA. DR HOGENOM; HOG000108024; -. DR OMA; THVSEGI; -. DR BioCyc; NMAR436308:GI3J-487-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 473 AA; 52076 MW; 223B4DDEE3FE31AF CRC64; MMPSAFAQFQ SGGVDMPGTW YVGEGLKHGD YFSYNLCHVD YKECAEFGLD MWIKGDIQSG SETKWLAEVV VYDGNKVVVG EMELGKIAPE PTGGSEELGV YRGAFKSSVA WLSAFATSDS GTSGKGPKAF SATSWGKIGN IGGEQVLPMK IETITISSGT WETVQMGWRT GGQTSKVWIV DEFPFPVKAH TLTHVSEGIP PAEYKFELLD YKENVSTSPF SGIVSTVDTF SEQGCDTDFE RDVTIKKPTN NFDYQIHVFY GPEEPVQGCE MQWLIKFISK FDDTEFLNQV QFDFLVVDDN LTPLRSMAQD EGRQYLYSPS GQYILDMVVQ EPPGKVNYVI WVYGLAPEGI VPGSAADYLQ IPVTVFASEG STPVVSPPFE TTSQEIPEWI KNNAGWWAEG AIDDGSFVQG IQFLIKEGIM QIPPTTQGTS SSNEIPSWIK QNAAWWAEGA IDDGSFVQGI QFLIKEGIMS ISS // ID A9A3F6_NITMS Unreviewed; 142 AA. AC A9A3F6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12888.1}; GN OrderedLocusNames=Nmar_0992 {ECO:0000313|EMBL:ABX12888.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12888.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12888.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12888.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12888.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0992; -. DR EnsemblBacteria; ABX12888; ABX12888; Nmar_0992. DR KEGG; nmr:Nmar_0992; -. DR eggNOG; arCOG08754; Archaea. DR eggNOG; ENOG4110ZS0; LUCA. DR HOGENOM; HOG000108590; -. DR OMA; AYENIAD; -. DR BioCyc; NMAR436308:GI3J-1020-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 142 AA; 16027 MW; F309C92289B7656E CRC64; MSKNEQTQSN PKDLFSVYQQ NVDKFFNGIR TSVPQYHQAI TNVQQEFIQA YENIADSTLT LQKEFAKKAG MAANIPEATI KVMQDTTEEV VKATSIQNQV TLATIDATQQ NIKTFNDNAK SFAELNRNIL QSWISAFTTK NN // ID A9A4D9_NITMS Unreviewed; 83 AA. AC A9A4D9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12628.1}; GN OrderedLocusNames=Nmar_0732 {ECO:0000313|EMBL:ABX12628.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12628.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12628.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12628.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12628.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0732; -. DR EnsemblBacteria; ABX12628; ABX12628; Nmar_0732. DR KEGG; nmr:Nmar_0732; -. DR eggNOG; arCOG08799; Archaea. DR eggNOG; ENOG4111148; LUCA. DR HOGENOM; HOG000110108; -. DR OMA; NGISAEW; -. DR BioCyc; NMAR436308:GI3J-758-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 83 AA; 9836 MW; 13ADC6C956E10FA7 CRC64; MDFMLEEELI DLMTFCLQNS DSPEVSEKHK RISEIGRELY DDGGVDALEN FFFVLKNRIT EEIEKDPSPM RSLWNGITDE WQY // ID A9A121_NITMS Unreviewed; 350 AA. AC A9A121; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Cobalamin (Vitamin B12) biosynthesis CbiG protein {ECO:0000313|EMBL:ABX11982.1}; GN OrderedLocusNames=Nmar_0082 {ECO:0000313|EMBL:ABX11982.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11982.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11982.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11982.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11982.1; -; Genomic_DNA. DR ProteinModelPortal; A9A121; -. DR STRING; 436308.Nmar_0082; -. DR EnsemblBacteria; ABX11982; ABX11982; Nmar_0082. DR KEGG; nmr:Nmar_0082; -. DR eggNOG; arCOG00651; Archaea. DR eggNOG; COG2073; LUCA. DR HOGENOM; HOG000290631; -. DR KO; K02189; -. DR OMA; HAGGAND; -. DR BioCyc; NMAR436308:GI3J-83-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.420.180; -; 1. DR InterPro; IPR021745; CbiG_mid. DR InterPro; IPR021744; CbiG_N. DR InterPro; IPR002750; CobE/GbiG_C. DR Pfam; PF01890; CbiG_C; 1. DR Pfam; PF11761; CbiG_mid; 1. DR Pfam; PF11760; CbiG_N; 1. DR SUPFAM; SSF159664; SSF159664; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 54 132 CbiG_N. {ECO:0000259|Pfam:PF11760}. FT DOMAIN 137 226 CbiG_mid. {ECO:0000259|Pfam:PF11761}. FT DOMAIN 229 346 CbiG_C. {ECO:0000259|Pfam:PF01890}. SQ SEQUENCE 350 AA; 38517 MW; 5C62BAC733EDC06C CRC64; MEKISVLSIT KNGIKIGQTL KEFFPEWSIF APDKFSNQND SITWYSEPTS EKIVELFKNN DAIICLFSLG AVIRLIAPHL KDKKTDPAVI VIDDKTNFVI SVLSGHIGGA NELTEKIAEK LQAQPVITTA ADVNKTIAVD LVGRDFGWKI DDDSNVTRIS AHMVNEEPIG VFQETGEKNW YKQLPKNVSL YNTINELKNS KSKANLIISD KIIDDDLASE SVVYRPLSLV IGIGLHWDTS KETIKEGIND CLDKFKLSPK SIAKLVSIKK PEDVQGLIDA GKEMGVPVEY VNREDLAKVT APNPSDTVKA FEGTASVSEA AAILVSNGKL IVEKQKFPPN LTIAIARIEN // ID A9A270_NITMS Unreviewed; 64 AA. AC A9A270; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12781.1}; GN OrderedLocusNames=Nmar_0885 {ECO:0000313|EMBL:ABX12781.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12781.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12781.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12781.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12781.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12781; ABX12781; Nmar_0885. DR KEGG; nmr:Nmar_0885; -. DR eggNOG; arCOG10558; Archaea. DR eggNOG; ENOG41110MS; LUCA. DR BioCyc; NMAR436308:GI3J-913-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 64 AA; 7381 MW; 93EF7EBDA59999FE CRC64; MEQKALECPV CKSNKAEIAG ENVKLSGRFE DKEFLTTDLT VLRCVRCGYY MFFDKMAQFT TKES // ID A9A2H5_NITMS Unreviewed; 115 AA. AC A9A2H5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Sec-independent translocation protein mttA/Hcf106 {ECO:0000313|EMBL:ABX13214.1}; GN OrderedLocusNames=Nmar_1318 {ECO:0000313|EMBL:ABX13214.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13214.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13214.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13214.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13214.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1318; -. DR EnsemblBacteria; ABX13214; ABX13214; Nmar_1318. DR KEGG; nmr:Nmar_1318; -. DR eggNOG; arCOG02694; Archaea. DR eggNOG; COG1826; LUCA. DR HOGENOM; HOG000245365; -. DR KO; K03116; -. DR OMA; AGSEWII; -. DR BioCyc; NMAR436308:GI3J-1351-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008565; F:protein transporter activity; IEA:InterPro. DR InterPro; IPR003369; TatA/B/E. DR Pfam; PF02416; MttA_Hcf106; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 37 61 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 115 AA; 12637 MW; AF59730F931194BC CRC64; MIDYSLNVAG SEWIIIIFVA LVLILGTGKL PGAARKLGKA VNEYNKAKND IQESMKEVTE EAPKISGPVE SERQKLEVIA KSIGVKVEGK TDDELRKIIA DKIGQKKIDE SENNQ // ID A9A4G9_NITMS Unreviewed; 87 AA. AC A9A4G9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12658.1}; GN OrderedLocusNames=Nmar_0762 {ECO:0000313|EMBL:ABX12658.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12658.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12658.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12658.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12658.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0762; -. DR EnsemblBacteria; ABX12658; ABX12658; Nmar_0762. DR KEGG; nmr:Nmar_0762; -. DR eggNOG; arCOG10546; Archaea. DR eggNOG; ENOG41110MU; LUCA. DR BioCyc; NMAR436308:GI3J-788-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 87 AA; 10575 MW; 341E5BAFF6747100 CRC64; MDSCDRRVRA YKNGKTLEQC KEIAESLNPK FKDHIEQNGR LLWSQILEQV DHDELIYKFT LKFLRRDGYD IGNHKRPHVK KFNHWFT // ID A9A4W7_NITMS Unreviewed; 320 AA. AC A9A4W7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Putative TIM-barrel protein, nifR3 family {ECO:0000313|EMBL:ABX13421.1}; GN OrderedLocusNames=Nmar_1525 {ECO:0000313|EMBL:ABX13421.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13421.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13421.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13421.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13421.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4W7; -. DR STRING; 436308.Nmar_1525; -. DR EnsemblBacteria; ABX13421; ABX13421; Nmar_1525. DR KEGG; nmr:Nmar_1525; -. DR eggNOG; arCOG00604; Archaea. DR eggNOG; COG0042; LUCA. DR HOGENOM; HOG000217853; -. DR OMA; PWRIIRS; -. DR BioCyc; NMAR436308:GI3J-1567-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR004652; tRNA_dU_NifR3. DR InterPro; IPR001269; tRNA_hU_synthase. DR PANTHER; PTHR11082; PTHR11082; 1. DR Pfam; PF01207; Dus; 1. DR PIRSF; PIRSF006621; Dus; 1. DR TIGRFAMs; TIGR00737; nifR3_yhdG; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 320 AA; 36034 MW; A8785503FFD8DF35 CRC64; MLPKFSSRAF LAPMAGVSDP ALRLQCKKMG AGLVVTEFTS IHSIIAKEEQ LKENMKTIQE FIEFSEQERP ISVQLFGSDL YALEKAATIV EPYFDIIDYN MGCPAPHITQ QMAGGALLQE VNLTQQIFET LVNAVKKPVT LKIRSGVTDA SKFLFRDIAE IAEDQGIQMI TFHPRTVSQG YSGSADWKLI KELKEISNIP VVGNGDITTP EDAKMMLDET GCDYVMIGRG AMGNPFLFEQ INDYLKTGSY KEYSFKDRLD SFFDYLHLTN QYKIKFSNIK SQAMRFTKGL KGGSKLRSKI TFSKNLEDLE KIMREAYSIS // ID A9A621_NITMS Unreviewed; 157 AA. AC A9A621; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=PUA domain containing protein {ECO:0000313|EMBL:ABX13499.1}; GN OrderedLocusNames=Nmar_1603 {ECO:0000313|EMBL:ABX13499.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13499.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13499.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13499.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13499.1; -; Genomic_DNA. DR ProteinModelPortal; A9A621; -. DR STRING; 436308.Nmar_1603; -. DR EnsemblBacteria; ABX13499; ABX13499; Nmar_1603. DR KEGG; nmr:Nmar_1603; -. DR eggNOG; arCOG00991; Archaea. DR eggNOG; COG1370; LUCA. DR HOGENOM; HOG000226524; -. DR KO; K07398; -. DR OMA; EGRSVFC; -. DR BioCyc; NMAR436308:GI3J-1647-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR Gene3D; 2.30.130.10; -; 1. DR InterPro; IPR002478; PUA. DR InterPro; IPR015947; PUA-like_domain. DR InterPro; IPR029402; TGT_C2. DR InterPro; IPR004521; Uncharacterised_CHP00451. DR Pfam; PF01472; PUA; 1. DR Pfam; PF14810; TGT_C2; 1. DR SMART; SM00359; PUA; 1. DR SUPFAM; SSF88697; SSF88697; 1. DR TIGRFAMs; TIGR00451; unchar_dom_2; 1. DR PROSITE; PS50890; PUA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 75 149 PUA. {ECO:0000259|PROSITE:PS50890}. SQ SEQUENCE 157 AA; 17579 MW; 7D1DB89DBCBB02CE CRC64; MDHVLKLQAS IDSLFGNGVS KHLPKDIEMT FSRKTGRIRT VIHKGKLLCT LRIDGGLAIS PYFAQMLLKS KTFKENCVEI NKDAAPFVQE GRSVFCKHVV KCGKNVRIAS DTPVLFKNKV IAVGRAVLSY EMISDFDRGV AIKVRDSLKS RKEEKEP // ID A9A2F3_NITMS Unreviewed; 104 AA. AC A9A2F3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12864.1}; GN OrderedLocusNames=Nmar_0968 {ECO:0000313|EMBL:ABX12864.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12864.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12864.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12864.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12864.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12864; ABX12864; Nmar_0968. DR KEGG; nmr:Nmar_0968; -. DR eggNOG; arCOG08680; Archaea. DR eggNOG; ENOG411107D; LUCA. DR HOGENOM; HOG000023844; -. DR BioCyc; NMAR436308:GI3J-996-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 104 AA; 11112 MW; BFDF6D3602AB1B61 CRC64; MQQTTQTKTP RLKFMVILAA ATSVILVFTL TPWNIVPTLV TEDVSVIAVT DYGCVGESVL GHSVVVADCG AGVGDVVSAT FYVPAMDQNG YYDRIEAKLT MVNP // ID A9A447_NITMS Unreviewed; 107 AA. AC A9A447; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12231.1}; GN OrderedLocusNames=Nmar_0335 {ECO:0000313|EMBL:ABX12231.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12231.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12231.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12231.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12231.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0335; -. DR EnsemblBacteria; ABX12231; ABX12231; Nmar_0335. DR KEGG; nmr:Nmar_0335; -. DR eggNOG; arCOG06055; Archaea. DR eggNOG; ENOG4110ZXZ; LUCA. DR HOGENOM; HOG000109425; -. DR OMA; HIEYEEF; -. DR BioCyc; NMAR436308:GI3J-350-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 107 AA; 12226 MW; 70F119E1323A703E CRC64; MHIEYEEFDS VEDFFMYLAS AAPPMKNTIP INSYKEHVMS FIPLSPSTGE TYLMLYVKGS LEPGIYEFDV PSKSYKKVDN IERADKVYFI SLTPKRNTIA DTAIANL // ID A9A5J5_NITMS Unreviewed; 270 AA. AC A9A5J5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12706.1}; GN OrderedLocusNames=Nmar_0810 {ECO:0000313|EMBL:ABX12706.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12706.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12706.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12706.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12706.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5J5; -. DR STRING; 436308.Nmar_0810; -. DR EnsemblBacteria; ABX12706; ABX12706; Nmar_0810. DR KEGG; nmr:Nmar_0810; -. DR eggNOG; arCOG04069; Archaea. DR eggNOG; COG2106; LUCA. DR HOGENOM; HOG000231378; -. DR KO; K09142; -. DR OMA; YAETPQY; -. DR BioCyc; NMAR436308:GI3J-837-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.1280.10; -; 2. DR InterPro; IPR029028; Alpha/beta_knot_MTases. DR InterPro; IPR003750; Put_MeTrfase. DR InterPro; IPR029026; tRNA_m1G_MTases_N. DR PANTHER; PTHR12150; PTHR12150; 1. DR Pfam; PF02598; Methyltrn_RNA_3; 1. DR SUPFAM; SSF75217; SSF75217; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 270 AA; 30298 MW; 84DB3D70AD9A8B0B CRC64; MKLSVAIPES SLSDESLKID KTRKISVLAR ACAIFKIETI YVYQEGNNKQ DGNLMVMILK YLETPQFLRR RLFSKVNDLK FAGVLQPLRI PSHATPANPK KINKGDVREG IVVSVKGKRF VDVGINQLIP FFGKTLMGKR VTVQFKEGHP NFSIKEINRN EAPDYWGYTV KERSNLFSLL SEWKGNIILT SRKGKTATKE QIAKYTKSDQ PTLVVFGSPE KGIHEILGGK MKNVQNAKSL NFFPNQATQT VRLEEALLGT LSIINAQSVS // ID A9A5X9_NITMS Unreviewed; 363 AA. AC A9A5X9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:ABX13457.1}; GN OrderedLocusNames=Nmar_1561 {ECO:0000313|EMBL:ABX13457.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13457.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13457.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13457.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13457.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1561; -. DR EnsemblBacteria; ABX13457; ABX13457; Nmar_1561. DR KEGG; nmr:Nmar_1561; -. DR eggNOG; arCOG02796; Archaea. DR eggNOG; COG2133; LUCA. DR HOGENOM; HOG000246901; -. DR OMA; YWVFSEP; -. DR BioCyc; NMAR436308:GI3J-1604-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016901; F:oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor; IEA:InterPro. DR GO; GO:0048038; F:quinone binding; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 2.120.10.30; -; 1. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. DR InterPro; IPR012938; Glc/Sorbosone_DH. DR InterPro; IPR011041; Quinoprot_gluc/sorb_DH. DR Pfam; PF07995; GSDH; 1. DR SUPFAM; SSF50952; SSF50952; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 49 348 GSDH. {ECO:0000259|Pfam:PF07995}. SQ SEQUENCE 363 AA; 40104 MW; 2C9F25A6A14D0529 CRC64; MDKRISIVAV VVAIAFSVYT LTLPSDPIPL PEPNFNSKND SFDILAENLE KPRSIAVSDN RIFVTEKDGS IVVIENDIQL ESPLATFRSA NVFDGGLLGI DLHPNFAENH YLYVFLTYEE DEALWNKILR ITESENKLQD AETIFDKIPG SSFTNGGFIK FGPDGKLYVG TGATSDSSHL PQDLDSLSGK ILRINDDGSI PDDNPFSNSP VYSLGHRNPQ GMTWDNNGNL YVSEFGPEKN DEINIILAGK NYGWPEQECS GNESFENAVL CYDPSIEPGG ILYYTGDKFD FEFPFIMASM RASNVYQVDF DEGLSSQKSI LSGIGRVRDV VQGPDGYLYV ITSNTDGKGF PAANDDKLLR ILK // ID A9A257_NITMS Unreviewed; 57 AA. AC A9A257; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12470.1}; GN OrderedLocusNames=Nmar_0574 {ECO:0000313|EMBL:ABX12470.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12470.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12470.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12470.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12470.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12470; ABX12470; Nmar_0574. DR KEGG; nmr:Nmar_0574; -. DR eggNOG; arCOG08736; Archaea. DR eggNOG; ENOG4110ZS2; LUCA. DR HOGENOM; HOG000108091; -. DR OMA; DEICVQC; -. DR BioCyc; NMAR436308:GI3J-597-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 57 AA; 6282 MW; 71AAFA76A5AB1416 CRC64; MVGPQDGGFG FDQSKKYTSV ENLDEICVQC QAGQHKNCLK KAGKQDVCEC EHCLIYG // ID A9A1J2_NITMS Unreviewed; 257 AA. AC A9A1J2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Rhodanese domain protein {ECO:0000313|EMBL:ABX13171.1}; GN OrderedLocusNames=Nmar_1275 {ECO:0000313|EMBL:ABX13171.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13171.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13171.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13171.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13171.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1J2; -. DR STRING; 436308.Nmar_1275; -. DR EnsemblBacteria; ABX13171; ABX13171; Nmar_1275. DR KEGG; nmr:Nmar_1275; -. DR eggNOG; arCOG02021; Archaea. DR eggNOG; COG0607; LUCA. DR BioCyc; NMAR436308:GI3J-1308-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.250.10; -; 2. DR InterPro; IPR001763; Rhodanese-like_dom. DR Pfam; PF00581; Rhodanese; 2. DR SMART; SM00450; RHOD; 2. DR SUPFAM; SSF52821; SSF52821; 2. DR PROSITE; PS50206; RHODANESE_3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 54 143 Rhodanese. {ECO:0000259|PROSITE:PS50206}. FT DOMAIN 165 253 Rhodanese. {ECO:0000259|PROSITE:PS50206}. SQ SEQUENCE 257 AA; 27956 MW; 4B576246C72E492E CRC64; MNKVIPVGIG IAVIVVIAMA AGFIGYEVEP TPSAIPIDQP FSISSSELEQ QMTLDPNLVV IDMRNSNSYV DGHIAGSSVD VMEGATLDKR IKTMFGRIPE VTQNMHVVLV GDSQSSALNS AQIMNDAGIK TSFLVDGIQS WDENLSTKMT PTVTSSEELY EQLQNQDDVY LLDVREPSEL EVTMISGSKN IPLADIFIEE NLSEIPTDKP VVIICGSGNR ATIATYELAQ HGIDFQVLEG GIIAWDAYLD ENNLPKH // ID A9A3M7_NITMS Unreviewed; 205 AA. AC A9A3M7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 61. DE RecName: Full=Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052}; DE Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052}; DE EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052}; GN Name=rnhB {ECO:0000256|HAMAP-Rule:MF_00052}; GN OrderedLocusNames=Nmar_1393 {ECO:0000313|EMBL:ABX13289.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13289.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13289.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13289.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Endonuclease that specifically degrades the RNA of RNA- CC DNA hybrids. {ECO:0000256|HAMAP-Rule:MF_00052, CC ECO:0000256|RuleBase:RU003515}. CC -!- CATALYTIC ACTIVITY: Endonucleolytic cleavage to 5'- CC phosphomonoester. {ECO:0000256|HAMAP-Rule:MF_00052, CC ECO:0000256|RuleBase:RU003515}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00052}; CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00052}; CC Note=Manganese or magnesium. Binds 1 divalent metal ion per CC monomer in the absence of substrate. May bind a second metal ion CC after substrate binding. {ECO:0000256|HAMAP-Rule:MF_00052}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00052}. CC -!- SIMILARITY: Belongs to the RNase HII family. {ECO:0000256|HAMAP- CC Rule:MF_00052, ECO:0000256|RuleBase:RU003515}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13289.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M7; -. DR STRING; 436308.Nmar_1393; -. DR EnsemblBacteria; ABX13289; ABX13289; Nmar_1393. DR KEGG; nmr:Nmar_1393; -. DR eggNOG; arCOG04121; Archaea. DR eggNOG; COG0164; LUCA. DR HOGENOM; HOG000100289; -. DR KO; K03470; -. DR OMA; AYVDACD; -. DR BioCyc; NMAR436308:GI3J-1428-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.460; -; 1. DR Gene3D; 3.30.420.10; -; 1. DR HAMAP; MF_00052_A; RNase_HII_A; 1. DR InterPro; IPR004649; RNase_H2_suA. DR InterPro; IPR001352; RNase_HII/HIII. DR InterPro; IPR024567; RNase_HII/HIII_dom. DR InterPro; IPR020787; RNase_HII_arc. DR InterPro; IPR023160; RNase_HII_hlx-loop-hlx_cap_dom. DR InterPro; IPR012337; RNaseH-like_dom. DR PANTHER; PTHR10954; PTHR10954; 1. DR Pfam; PF01351; RNase_HII; 1. DR SUPFAM; SSF53098; SSF53098; 1. DR TIGRFAMs; TIGR00729; TIGR00729; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00052}; KW Endonuclease {ECO:0000256|HAMAP-Rule:MF_00052, KW ECO:0000256|RuleBase:RU003515}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00052, KW ECO:0000256|RuleBase:RU003515}; KW Manganese {ECO:0000256|HAMAP-Rule:MF_00052}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00052}; KW Nuclease {ECO:0000256|HAMAP-Rule:MF_00052, KW ECO:0000256|RuleBase:RU003515}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 198 RNase_HII. {ECO:0000259|Pfam:PF01351}. FT METAL 7 7 Divalent metal cation. FT {ECO:0000256|HAMAP-Rule:MF_00052}. FT METAL 105 105 Divalent metal cation. FT {ECO:0000256|HAMAP-Rule:MF_00052}. SQ SEQUENCE 205 AA; 23012 MW; 2D59FBB55B0863B1 CRC64; MQICGVDDAG RGSMLGPLVI SGISINKKNL RKLSSLGVKD SKKLSPKSRE LLYKQIIELV DDYYIAKITP RSIDASVKKH GLNELEAKYM AKVVLKLDPD TSYVDSCDVN PKRFGKEISK LSDNHKIKSY HHADSRFVVV SAASIIAKVT RDRAIEKLRK TYDLGSGYPS DSKTVKFVTR YYKTSKSLPT FVRKSWKPVQ KILNG // ID A9A3V4_NITMS Unreviewed; 178 AA. AC A9A3V4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13654.1}; GN OrderedLocusNames=Nmar_1758 {ECO:0000313|EMBL:ABX13654.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13654.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13654.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13654.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13654.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1758; -. DR EnsemblBacteria; ABX13654; ABX13654; Nmar_1758. DR KEGG; nmr:Nmar_1758; -. DR eggNOG; arCOG08749; Archaea. DR eggNOG; ENOG411117Q; LUCA. DR HOGENOM; HOG000108434; -. DR OMA; FWTRNPK; -. DR BioCyc; NMAR436308:GI3J-1805-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 178 AA; 20781 MW; 6EEAD26A6824611D CRC64; MSESRISDIE LVKSKDEYAS DENIEINVQF SVEGGLRDAF NEANWTEAYN KNDVSFKMKC GIKLTSGGFR KKELGRTIDT YRKASIFWTR NPKLVNPMKD RRIWVQVAKN FEPFIRLTEE EVRQELFDFN EKFVFKAEDL GKGTHKISAE AFASWQKHEF TEPGNVKNNS REIEIKIN // ID A9A637_NITMS Unreviewed; 116 AA. AC A9A637; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX13515.1}; GN OrderedLocusNames=Nmar_1619 {ECO:0000313|EMBL:ABX13515.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13515.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13515.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13515.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13515.1; -; Genomic_DNA. DR ProteinModelPortal; A9A637; -. DR STRING; 436308.Nmar_1619; -. DR EnsemblBacteria; ABX13515; ABX13515; Nmar_1619. DR KEGG; nmr:Nmar_1619; -. DR eggNOG; arCOG02391; Archaea. DR eggNOG; COG0784; LUCA. DR HOGENOM; HOG000034820; -. DR KO; K03413; -. DR OMA; FRMHELL; -. DR BioCyc; NMAR436308:GI3J-1663-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 116 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 116 AA; 12937 MW; 702CCD6051B2D5E1 CRC64; MSRSVIIIDD DEDTVRLFSE FLEEKGINIV GNGFDGITAV KLYKKLKPDV TLIDINMPNG SGFYAIKKIQ EIEPKARIIA VTADTSTVTE EKLQKLNVTI VQKPFNIEHV ISSINT // ID A9A4A0_NITMS Unreviewed; 138 AA. AC A9A4A0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 41. DE SubName: Full=DoxX family protein {ECO:0000313|EMBL:ABX12589.1}; GN OrderedLocusNames=Nmar_0693 {ECO:0000313|EMBL:ABX12589.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12589.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12589.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12589.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12589.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0693; -. DR EnsemblBacteria; ABX12589; ABX12589; Nmar_0693. DR KEGG; nmr:Nmar_0693; -. DR eggNOG; arCOG08092; Archaea. DR eggNOG; COG2259; LUCA. DR HOGENOM; HOG000198397; -. DR KO; K15977; -. DR OMA; FRAWHIP; -. DR BioCyc; NMAR436308:GI3J-718-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032808; DoxX. DR Pfam; PF07681; DoxX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 71 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 78 95 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 107 126 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 138 AA; 14462 MW; 65323BCF5071FF0D CRC64; MTTAEIKGSI LNDVVFMGLR SAIGVIFILH GMMKFNPGFA NALPNMGLPP EMQIPIALAE VVPGILLIIG VLSRFSGALL SIVMIGAIFH IKGAQSMTGD GGVEFDVILL AASLVIMIAG PGRISLAQAI KKIPRCIH // ID A9A2G5_NITMS Unreviewed; 253 AA. AC A9A2G5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 46. DE SubName: Full=Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABX13204.1}; GN OrderedLocusNames=Nmar_1308 {ECO:0000313|EMBL:ABX13204.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13204.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13204.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13204.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the enoyl-CoA hydratase/isomerase family. CC {ECO:0000256|RuleBase:RU003707}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13204.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G5; -. DR STRING; 436308.Nmar_1308; -. DR EnsemblBacteria; ABX13204; ABX13204; Nmar_1308. DR KEGG; nmr:Nmar_1308; -. DR eggNOG; arCOG00239; Archaea. DR eggNOG; COG1024; LUCA. DR HOGENOM; HOG000027939; -. DR KO; K15019; -. DR OMA; TLIVETR; -. DR BioCyc; NMAR436308:GI3J-1341-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.226.10; -; 1. DR InterPro; IPR029045; ClpP/crotonase-like_dom. DR InterPro; IPR001753; Crotonase_core_superfam. DR InterPro; IPR018376; Enoyl-CoA_hyd/isom_CS. DR Pfam; PF00378; ECH_1; 1. DR SUPFAM; SSF52096; SSF52096; 1. DR PROSITE; PS00166; ENOYL_COA_HYDRATASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX13204.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 253 AA; 27152 MW; 23360BA846BA7290 CRC64; MSLVTTSTSD GICTVKINRP DKLNAMNTDV AKELIKTFEE LNHNDDVKVI ILTGEGEKAF SAGADIEYMS KISADESVEY AKTGQLVTAT VELVKQPTIA AVNGFALGGG CELAMSCDIR IAADTAKLGQ PEVTIGVPPG WGGTQRLMRI VGIAKAKELV YTGKMIKAEE AKEIGLVNHV VPLASLQEEA LKMAQQIAGN STMGVQMSKV AINKGRNADL DTGLGLEILA WRNCFTHPDR QERMTAFVNK SKK // ID A9A4H3_NITMS Unreviewed; 473 AA. AC A9A4H3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:ABX12951.1}; GN OrderedLocusNames=Nmar_1055 {ECO:0000313|EMBL:ABX12951.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12951.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12951.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12951.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12951.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1055; -. DR EnsemblBacteria; ABX12951; ABX12951; Nmar_1055. DR KEGG; nmr:Nmar_1055; -. DR eggNOG; arCOG00321; Archaea. DR eggNOG; COG0312; LUCA. DR KO; K03568; -. DR OMA; NTESYGV; -. DR BioCyc; NMAR436308:GI3J-1086-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008237; F:metallopeptidase activity; IEA:InterPro. DR InterPro; IPR025502; TldD. DR InterPro; IPR002510; TldD/PmbA. DR Pfam; PF01523; PmbA_TldD; 1. DR PIRSF; PIRSF004919; TldD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 473 AA; 52914 MW; B305CB4A6144ABE8 CRC64; MDTQLEEFAD YAIKYADDAK VQYCDIRSEE QERVSILIEN GETEHVRTIN DSGIGIRLVK DGTWSFCSIT NPESKEQVRK AIDSSIKNSM HYAKNKKESF SLYPNKSIQK KIDYHTEQKP NLEELIKIGT ICNKIISDTP KIIKSIVNPW YTNNSKYFAN SEGSKISQNF SDVVIDMVAI AHESGLTQSV NITEGGRGGI EQITKGDKAQ NSAQEIAKKA SKLLSAKPAK EEKATVVMNP DFVSLLTHEI LGHPSEADRV LGKEMAWAGG AWWKGKIGEK IGSEHLNVFD DPTIEESLGW YLFDDEGVQT KKTTLVEEGV LKNHMQNRET GKIFNEEPTG NMRATNYRFM PLIRMACTCI ENGDWDVDEM IKEVKNGYLI SNMKIPSIDM KRYNWSISCQ YAQKIENGEV TDLLRDVIVM GTAPEFFQSI DACGNDFTVR PITNCGKGDP MQSMIMGNGG PSIRGVATVK SVN // ID A9A5M4_NITMS Unreviewed; 275 AA. AC A9A5M4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12735.1}; GN OrderedLocusNames=Nmar_0839 {ECO:0000313|EMBL:ABX12735.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12735.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12735.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12735.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12735.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0839; -. DR EnsemblBacteria; ABX12735; ABX12735; Nmar_0839. DR KEGG; nmr:Nmar_0839; -. DR eggNOG; arCOG01631; Archaea. DR eggNOG; COG0500; LUCA. DR HOGENOM; HOG000105705; -. DR OMA; VISGERC; -. DR BioCyc; NMAR436308:GI3J-866-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 275 AA; 30761 MW; AE8D3E7E47123E66 CRC64; MFDEIVQNLV SIKQDFAKNY SGNAHIQEVV PASNSEKFPL DEGHLQSIHN FAEKNPIYHD SFEEKILGTD CVVYEGDIND YWLNSIKHGT SCQPFYPTWM ISAYLMTLIA KNLGYEELID IGSGDGRIAF CGKILGFTTH SIEIDDGLVE LQKIICNDTK QSFDPICDDA LEFDYSKFQL SKPVFFIGGL PQMGGDMLAT SIIDKINSID QLKSSTGIVF AGTHSKRQLS GNLANGGWSS LIENHNLQVI ETVSLPTVWT FDQTTETPYI YTKFN // ID A9A2X1_NITMS Unreviewed; 264 AA. AC A9A2X1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Precorrin-3B C17-methyltransferase {ECO:0000313|EMBL:ABX13648.1}; GN OrderedLocusNames=Nmar_1752 {ECO:0000313|EMBL:ABX13648.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13648.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13648.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13648.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13648.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2X1; -. DR STRING; 436308.Nmar_1752; -. DR EnsemblBacteria; ABX13648; ABX13648; Nmar_1752. DR KEGG; nmr:Nmar_1752; -. DR eggNOG; arCOG00647; Archaea. DR eggNOG; COG1010; LUCA. DR HOGENOM; HOG000290744; -. DR KO; K05934; -. DR OMA; GAPLNHD; -. DR BioCyc; NMAR436308:GI3J-1799-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.950.10; -; 1. DR Gene3D; 3.40.1010.10; -; 1. DR InterPro; IPR000878; 4pyrrol_Mease. DR InterPro; IPR014777; 4pyrrole_Mease_sub1. DR InterPro; IPR014776; 4pyrrole_Mease_sub2. DR InterPro; IPR006363; Cbl_synth_CobJ/CibH_dom. DR Pfam; PF00590; TP_methylase; 1. DR SUPFAM; SSF53790; SSF53790; 1. DR TIGRFAMs; TIGR01466; cobJ_cbiH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13648.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13648.1}. FT DOMAIN 4 215 TP_methylase. {ECO:0000259|Pfam:PF00590}. SQ SEQUENCE 264 AA; 29013 MW; B045E80AC9E7ED61 CRC64; MTGKLNIVGV GPGHNDHMTF RAKEIIRESD IIIGYETYVN LVSDLIEGKT VYRYAMTQEV ERAHQCIDLA KSGKIVSLVS SGDPGIYGMA GLIYETLAEG GWDPKDGLQV EVVPGVSALN SCASIVGSPL MSDFAVVSMS DLLVPWKVIE NRVESAAKGD FVLVIYNPAS KKRVHQLQDT RKILLKYRKP TTPVAIIVGA YRESESIVIT DLENLPNHSD KLGMTSTVIV GNSSTYSYKD LMINPRGYKS KYNLEEQTNP DLKV // ID A9A509_NITMS Unreviewed; 99 AA. AC A9A509; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11918.1}; GN OrderedLocusNames=Nmar_0018 {ECO:0000313|EMBL:ABX11918.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11918.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11918.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11918.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11918.1; -; Genomic_DNA. DR EnsemblBacteria; ABX11918; ABX11918; Nmar_0018. DR KEGG; nmr:Nmar_0018; -. DR eggNOG; arCOG08804; Archaea. DR eggNOG; ENOG41110WJ; LUCA. DR HOGENOM; HOG000110185; -. DR OMA; FSREYIS; -. DR BioCyc; NMAR436308:GI3J-18-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 29 68 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 99 AA; 11215 MW; 612473D66EF54BBD CRC64; MHYLDEKVFG KITTKEIIGA EPPEIPDTKD ILENELATLV SELESQSKEN LEKLLEQQQA AEAHVNSRPG AMALSQPKIQ LFTKYSQKYI QSIKEKLDS // ID A9A4L6_NITMS Unreviewed; 380 AA. AC A9A4L6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Phosphoesterase DHHA1 {ECO:0000313|EMBL:ABX12994.1}; GN OrderedLocusNames=Nmar_1098 {ECO:0000313|EMBL:ABX12994.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12994.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12994.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12994.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12994.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4L6; -. DR STRING; 436308.Nmar_1098; -. DR EnsemblBacteria; ABX12994; ABX12994; Nmar_1098. DR KEGG; nmr:Nmar_1098; -. DR eggNOG; arCOG00424; Archaea. DR eggNOG; COG0608; LUCA. DR HOGENOM; HOG000107154; -. DR KO; K07463; -. DR OMA; TCCSASE; -. DR BioCyc; NMAR436308:GI3J-1129-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR InterPro; IPR003156; DHHA1_dom. DR Pfam; PF02272; DHHA1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 318 376 DHHA1. {ECO:0000259|Pfam:PF02272}. SQ SEQUENCE 380 AA; 41981 MW; B1F0690FD4F5DF45 CRC64; MLAATKKPAT KKSTTKKTKT TTKKTTTKKV VKKTTKKTAT KKVAKKTTTK KVTKSNRTKV ICISHKEDAD GISSAALIRQ AFGGDAILVD YPGQMEALQQ VVTDEKLKSL YICDLGLSKK TQDEFIDIMK TLRKNKVSIT YIDHHDIDPN VVKSLEKLKV KVIHDINECT TVQVYNAYKS KLNEHATFVA TCAAITDYME DRPLGSKLLQ MYDRQFALIS ATVLTYNIVG HQKEPDYLLY LVEELAESKF PHDIPNTFEF AQIQVEKLSQ MIAKVKAGMK TMKNLGHMEI LDSGASGAVN FVMGLSGKDV GVAYKERVDH GIYAVSVRGS KNCKVHLGKI VNLLATDLGG SGGGHDRACG AVIPKPKIKK FITELNKKIK // ID A9A295_NITMS Unreviewed; 347 AA. AC A9A295; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12806.1}; GN OrderedLocusNames=Nmar_0910 {ECO:0000313|EMBL:ABX12806.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12806.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12806.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12806.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12806.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12806; ABX12806; Nmar_0910. DR KEGG; nmr:Nmar_0910; -. DR eggNOG; arCOG10358; Archaea. DR eggNOG; ENOG41110A2; LUCA. DR BioCyc; NMAR436308:GI3J-938-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 347 AA; 40506 MW; C60487B7C72C690D CRC64; MKVFLGTIMM FIVIGGVLEA YAEEFTYNEK VAYAVESQKV IAHMIAIYDN LGKDGIYSEL SNMHFDHILK HNLEVMENYY SEHADYQDEL KHTLLEIENS GFNEKAVFIE HAKKLFPLLN SGTDLITSDL NDEKFFRLVV VMLLLESVKT EYIESQETAG VESLLKKQHA DTMAIRAHMY FENTNEIPIE MKYVIEQKFQ RIFQLMNSHE VKIEHYDLLN EIVTEIYDHI EENEQSNSNK ELDETKILNK ESDEPEKTGP KIMLRTDQKN GNEIVSFEGT GFPRDIRVDI KYVTNLDKEI QHVKVRSLDN GTFYLPIEMN PEEKTYFLNA EYMETVTVFT ISNNIQY // ID A9A3D1_NITMS Unreviewed; 383 AA. AC A9A3D1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase {ECO:0000313|EMBL:ABX12560.1}; GN OrderedLocusNames=Nmar_0664 {ECO:0000313|EMBL:ABX12560.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12560.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12560.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12560.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12560.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0664; -. DR EnsemblBacteria; ABX12560; ABX12560; Nmar_0664. DR KEGG; nmr:Nmar_0664; -. DR eggNOG; ENOG4111VRC; LUCA. DR OMA; WDYNSEN; -. DR BioCyc; NMAR436308:GI3J-689-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0047355; F:CDP-glycerol glycerophosphotransferase activity; IEA:InterPro. DR InterPro; IPR007554; Glycerophosphate_synth. DR Pfam; PF04464; Glyphos_transf; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12560.1}. SQ SEQUENCE 383 AA; 44700 MW; 4857F1D0A6CFD4F8 CRC64; MGFFSKNEST DLKEFSNLDI AEKQIVFYSE DKNSTIIFES FIDELIKNYD VSICYVTSSK EELDIISKNK KIKAFYVGEG VARTKFFLEL QANILIMTMP DLEAFHIKRS KMHNVHYIYM FHSMISTHLG YRKEAFDYFD SIFCVGNYQI NEIKEAEKLY NLKAKKLVQF GYTHLDNLLK IHSKNTDITL KQKDSYQIII APSWGKDGLF ETVSEKIINI LLNSGYKVIL RIHPMTQKKS KKKVEHILKT FSKNSNFFLE QNISYFDSFL QSDIMISDWS GVALEFAFGF EKPVMYIDTP KKMRNPNFKD ISQIPIEESI RNKIGIIVPT TELETIPKKI EEIYTNQESI KNQIRNNRDE TVFNIGKSVI VGTEYIIKLL KKK // ID A9A1K0_NITMS Unreviewed; 252 AA. AC A9A1K0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 54. DE SubName: Full=Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX13179.1}; GN OrderedLocusNames=Nmar_1283 {ECO:0000313|EMBL:ABX13179.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13179.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13179.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13179.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13179.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K0; -. DR STRING; 436308.Nmar_1283; -. DR EnsemblBacteria; ABX13179; ABX13179; Nmar_1283. DR KEGG; nmr:Nmar_1283; -. DR eggNOG; arCOG00169; Archaea. DR eggNOG; COG0600; LUCA. DR HOGENOM; HOG000134230; -. DR KO; K02050; -. DR OMA; RELMDVP; -. DR BioCyc; NMAR436308:GI3J-1316-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU363032}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363032}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 12 29 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 61 83 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 95 115 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 121 142 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 163 180 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 186 207 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 219 238 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 57 237 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 252 AA; 27002 MW; 55FD0B0C330674C7 CRC64; MAKNYTPHRI AFYIGIIAVW QITAMTGLWP DNVFPSPYEV AEDLAYGAAD GSLFYGIATS MWRLAVGLAI AIAGGIVLGI FMARVEVVNQ TVGSLVLGLQ SIPSIAWVPL AILWFGLTDA GIIFVTAIGA IFAVTINTYT GVKNINPHFI EAARNMGAKG SQLVTAVLIP AAFPYMISGF KQGWAFAWRG VIGAEILFSF LGLGFLLNAG RSLNDVSQVI AIMLVIMGIG LAVDGVVFKK LEDKVMSRWG LR // ID A9A4C3_NITMS Unreviewed; 87 AA. AC A9A4C3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12612.1}; GN OrderedLocusNames=Nmar_0716 {ECO:0000313|EMBL:ABX12612.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12612.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12612.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12612.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12612.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0716; -. DR EnsemblBacteria; ABX12612; ABX12612; Nmar_0716. DR KEGG; nmr:Nmar_0716; -. DR eggNOG; arCOG08750; Archaea. DR eggNOG; ENOG41111NI; LUCA. DR HOGENOM; HOG000108456; -. DR OMA; KGGSCPR; -. DR BioCyc; NMAR436308:GI3J-742-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 23 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 87 AA; 9116 MW; 4C11BD38DD4B6B08 CRC64; MVLPFPYGLG AALAIFIAFP LILRRRYMNR MRGGYGGSDS GAGGGGFFGM GSQGGSGGVR YVCLVCNNKH KGGSCPRCGS KMQRADF // ID A9A2Y1_NITMS Unreviewed; 87 AA. AC A9A2Y1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12109.1}; GN OrderedLocusNames=Nmar_0213 {ECO:0000313|EMBL:ABX12109.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12109.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12109.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12109.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12109.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12109; ABX12109; Nmar_0213. DR KEGG; nmr:Nmar_0213; -. DR eggNOG; arCOG10521; Archaea. DR eggNOG; ENOG41110RF; LUCA. DR OMA; HICQCIV; -. DR BioCyc; NMAR436308:GI3J-218-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 87 AA; 9523 MW; 541AC2B2E9476EBA CRC64; MAEDVCDFCK GVGSSGSNVC VYCNGTGEWN QAAQAYLKNH ICQCIVMDRK FCPVCNKPCH HDTSLNPKQK IDPGYGGMSE KEVTVMT // ID A9A357_NITMS Unreviewed; 296 AA. AC A9A357; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Na+/Ca+ antiporter, CaCA family {ECO:0000313|EMBL:ABX12486.1}; GN OrderedLocusNames=Nmar_0590 {ECO:0000313|EMBL:ABX12486.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12486.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12486.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12486.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12486.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0590; -. DR EnsemblBacteria; ABX12486; ABX12486; Nmar_0590. DR KEGG; nmr:Nmar_0590; -. DR eggNOG; arCOG02881; Archaea. DR eggNOG; COG0530; LUCA. DR HOGENOM; HOG000274120; -. DR KO; K07301; -. DR OMA; EQMAELP; -. DR BioCyc; NMAR436308:GI3J-613-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR004481; K/Na/Ca-exchanger. DR InterPro; IPR004837; NaCa_Exmemb. DR PANTHER; PTHR10846; PTHR10846; 1. DR Pfam; PF01699; Na_Ca_ex; 2. DR TIGRFAMs; TIGR00367; TIGR00367; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 25 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 78 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 90 106 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 130 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 151 170 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 190 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 224 246 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 252 269 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 276 295 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 4 129 Na_Ca_ex. {ECO:0000259|Pfam:PF01699}. FT DOMAIN 155 294 Na_Ca_ex. {ECO:0000259|Pfam:PF01699}. SQ SEQUENCE 296 AA; 31076 MW; E519A04CB843023B CRC64; MLCFGGNWLV SGGVAIARKF RISNLVIGMT IVAYGTSTPE LAASIAAAGE HSAIILGNII GSNIANVGMV IGIAAILVPL SIHKSILRKE IPIMLGVSVL LILISIDGEL STYDGILLLV GLGVFGYYTF KDAMKRREDN KDDIQQGGNN VYLKSIGLIG LGIGLLYVGA LLTVDNAVIL AKEFGLSEKI IGLTVIAIGT SLPELITSII AIRKGHSDIG VGNIIGSNIY NILMIMGVGA ALGGVMISDD VYVDYAIMIL FSISLLIGLK TGVINRAMGV CLAIGYVTYL VLTFFK // ID A9A1H8_NITMS Unreviewed; 422 AA. AC A9A1H8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:ABX13157.1}; GN OrderedLocusNames=Nmar_1261 {ECO:0000313|EMBL:ABX13157.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13157.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13157.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13157.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13157.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1H8; -. DR STRING; 436308.Nmar_1261; -. DR EnsemblBacteria; ABX13157; ABX13157; Nmar_1261. DR KEGG; nmr:Nmar_1261; -. DR eggNOG; arCOG01358; Archaea. DR eggNOG; COG0621; LUCA. DR HOGENOM; HOG000224767; -. DR OMA; VRVGMMN; -. DR BioCyc; NMAR436308:GI3J-1294-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro. DR GO; GO:0016740; F:transferase activity; IEA:InterPro. DR GO; GO:0009451; P:RNA modification; IEA:InterPro. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR023970; MeThioTfrase/rSAM. DR InterPro; IPR005839; Methylthiotransferase. DR InterPro; IPR020612; Methylthiotransferase_CS. DR InterPro; IPR013848; Methylthiotransferase_N. DR InterPro; IPR006466; MiaB-like_B. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR PANTHER; PTHR11918; PTHR11918; 1. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF00919; UPF0004; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR01578; MiaB-like-B; 1. DR TIGRFAMs; TIGR00089; TIGR00089; 1. DR PROSITE; PS51449; MTTASE_N; 1. DR PROSITE; PS01278; MTTASE_RADICAL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 110 MTTase N-terminal. FT {ECO:0000259|PROSITE:PS51449}. SQ SEQUENCE 422 AA; 46841 MW; 0F041810DD33597A CRC64; MAKIFVESYG CSASFADSEM ISGLILNGGH TLVEDSSESD LNVVVTCSVK DATANKMVHR IKSLKTKPLV VAGCLPKAEK ETVEKFSENA SLLGPNSLGK TLQVIDSTLK GRKKIALEDT DLSKVGLPKV RLNPAVGIVE IASGCMSECT FCQTKISKGD LQSYRLGDIV RQVKTEINEG CKEVWLTSTD NGCYGFDIGT DLPSLINAVS EIPEEFMIRV GMMNPMYMPR IKEKLIESYD NDKVFKFLHI PVQSGSDKVL HDMKRGHTAG TFREIVKKAR ERFPDFTIST DIIVGFPSET KEDFEKTVEL LDETRPDVVN LSKYSARPGT EAAEWEQIDV AEVKSRSKRI FEQINKISLE NNKKWIGWKG DVLFDEQTDE GIKGRNFAYK PVFVPEQVDI GQLHAVEIID ATQNSLLGKI AS // ID A9A136_NITMS Unreviewed; 361 AA. AC A9A136; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 68. DE SubName: Full=Chaperone protein DnaJ {ECO:0000313|EMBL:ABX11997.1}; GN OrderedLocusNames=Nmar_0097 {ECO:0000313|EMBL:ABX11997.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11997.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11997.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11997.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11997.1; -; Genomic_DNA. DR ProteinModelPortal; A9A136; -. DR SMR; A9A136; 7-70. DR STRING; 436308.Nmar_0097; -. DR EnsemblBacteria; ABX11997; ABX11997; Nmar_0097. DR KEGG; nmr:Nmar_0097; -. DR eggNOG; arCOG02846; Archaea. DR eggNOG; COG0484; LUCA. DR HOGENOM; HOG000226717; -. DR KO; K03686; -. DR OMA; IKDPCNS; -. DR BioCyc; NMAR436308:GI3J-99-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR GO; GO:0009408; P:response to heat; IEA:InterPro. DR Gene3D; 1.10.287.110; -; 1. DR Gene3D; 2.10.230.10; -; 1. DR HAMAP; MF_01152; DnaJ; 1. DR InterPro; IPR012724; DnaJ. DR InterPro; IPR002939; DnaJ_C. DR InterPro; IPR001623; DnaJ_domain. DR InterPro; IPR018253; DnaJ_domain_CS. DR InterPro; IPR008971; HSP40/DnaJ_pept-bd. DR InterPro; IPR001305; HSP_DnaJ_Cys-rich_dom. DR Pfam; PF00226; DnaJ; 1. DR Pfam; PF01556; DnaJ_C; 1. DR Pfam; PF00684; DnaJ_CXXCXGXG; 1. DR PRINTS; PR00625; JDOMAIN. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR SUPFAM; SSF49493; SSF49493; 3. DR SUPFAM; SSF57938; SSF57938; 1. DR TIGRFAMs; TIGR02349; DnaJ_bact; 1. DR PROSITE; PS00636; DNAJ_1; 1. DR PROSITE; PS50076; DNAJ_2; 1. DR PROSITE; PS51188; ZF_CR; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|RuleBase:RU362013}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repeat {ECO:0000256|RuleBase:RU362013}; KW Zinc {ECO:0000256|RuleBase:RU362013}. FT DOMAIN 6 70 J. {ECO:0000259|PROSITE:PS50076}. FT DOMAIN 141 223 CR-type. {ECO:0000259|PROSITE:PS51188}. SQ SEQUENCE 361 AA; 39345 MW; 9BFC797342D150DC CRC64; MSAKRDYYEV LGVSKSSSND EIKKQYRKLA LKFHPDRNQS AEAGEHFKEI SEAYAVLSDT EKRQLYDQHG HAGVDGRYSS EDIFQGARGD FSDIFGRGGG GFDSIFESIF GRGGGGFGFG QQRGSDILYQ TSVTLEDVLH GKQMEIELQK QIQCDTCNGS GCKPGTDKKT CSSCNGQGQV RQTRNMGFAS FVTAAPCSSC RGQGSIIETP CGDCKGQGKR KGTKKVTFDI PPGIDSGDYT VSNEGNEVPG GSNGDLIVRI RVQPHSNFNR DGKDIFYDQD VSMVDAALGC EVIVPTLEGT EKVKVDSGSQ PNTIIKLKGK GVPHINSRGR GDQYVRIVVN IPKKLNKHQK NLLDEFKQTS D // ID A9A4B6_NITMS Unreviewed; 215 AA. AC A9A4B6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Nitroreductase {ECO:0000313|EMBL:ABX12605.1}; GN OrderedLocusNames=Nmar_0709 {ECO:0000313|EMBL:ABX12605.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12605.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12605.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12605.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12605.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4B6; -. DR STRING; 436308.Nmar_0709; -. DR EnsemblBacteria; ABX12605; ABX12605; Nmar_0709. DR KEGG; nmr:Nmar_0709; -. DR eggNOG; arCOG00288; Archaea. DR eggNOG; COG0778; LUCA. DR HOGENOM; HOG000023858; -. DR OMA; CEEHREM; -. DR BioCyc; NMAR436308:GI3J-735-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 2. DR SUPFAM; SSF55469; SSF55469; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 53 112 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. FT DOMAIN 116 194 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. SQ SEQUENCE 215 AA; 24091 MW; 1119575FF91520AF CRC64; MAPDVKEEKI YPLGYEPETT PESTDPNVRN QLINFILKSG PTEVVDTDLF AVMAKRRSTR KFLDKPVETA KIDKIIAAAD TAPTAGNYQG FEIFYVKSPE KKKQLIEACN NQPYVNAPVV LVFCKNPSRV KFDFPEYVLK KFAIQDATLA AGYSQLAAQA LGLSSIWIGM FDEQKVMDVI GTDLVPSSVL CIGYPKQTKF PKPRRNLKDL VHVTW // ID A9A638_NITMS Unreviewed; 202 AA. AC A9A638; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13516.1}; GN OrderedLocusNames=Nmar_1620 {ECO:0000313|EMBL:ABX13516.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13516.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13516.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13516.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13516.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1620; -. DR EnsemblBacteria; ABX13516; ABX13516; Nmar_1620. DR KEGG; nmr:Nmar_1620; -. DR eggNOG; arCOG03067; Archaea. DR eggNOG; COG0640; LUCA. DR BioCyc; NMAR436308:GI3J-1664-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 202 AA; 23232 MW; 65AF82D206EB31A8 CRC64; MPGLDKLIST SIPIKIKKKI DADTLKKIER ELFLEHGMSI KLATEHFQTL LKIIKKNSEL DIKEFENKCL KEIIQVKKVK ENYHLTILDS KLVHVILDMF GDDETRKMIT YILKSEHTIP EILRESGIPK TSGYRKIENL LISGFFIETG KVLSESKKIS KIQCIFQEIS IDAKKEKLTV SGIVPKKTFE KSTTMKSILK EL // ID A9A1Z2_NITMS Unreviewed; 326 AA. AC A9A1Z2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 60. DE RecName: Full=Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; DE EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515}; GN OrderedLocusNames=Nmar_0509 {ECO:0000313|EMBL:ABX12405.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12405.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12405.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12405.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: 2 5-aminolevulinate = porphobilinogen + 2 CC H(2)O. {ECO:0000256|RuleBase:RU000515}. CC -!- SUBUNIT: Homooctamer. {ECO:0000256|PIRSR:PIRSR001415-3, CC ECO:0000256|RuleBase:RU000515}. CC -!- SIMILARITY: Belongs to the ALAD family. CC {ECO:0000256|RuleBase:RU004161}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12405.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Z2; -. DR SMR; A9A1Z2; 6-324. DR STRING; 436308.Nmar_0509; -. DR EnsemblBacteria; ABX12405; ABX12405; Nmar_0509. DR KEGG; nmr:Nmar_0509; -. DR eggNOG; arCOG04300; Archaea. DR eggNOG; COG0113; LUCA. DR HOGENOM; HOG000020323; -. DR KO; K01698; -. DR OMA; ISYHAKE; -. DR BioCyc; NMAR436308:GI3J-530-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004655; F:porphobilinogen synthase activity; IEA:UniProtKB-EC. DR GO; GO:0006779; P:porphyrin-containing compound biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR001731; ALAD. DR InterPro; IPR030656; ALAD_AS. DR InterPro; IPR013785; Aldolase_TIM. DR PANTHER; PTHR11458; PTHR11458; 1. DR Pfam; PF00490; ALAD; 1. DR PIRSF; PIRSF001415; Porphbilin_synth; 1. DR PRINTS; PR00144; DALDHYDRTASE. DR SMART; SM01004; ALAD; 1. DR PROSITE; PS00169; D_ALA_DEHYDRATASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|RuleBase:RU000515, ECO:0000313|EMBL:ABX12405.1}; KW Magnesium {ECO:0000256|PIRSR:PIRSR001415-5}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR001415-3}; KW Porphyrin biosynthesis {ECO:0000256|RuleBase:RU000515}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|PIRSR:PIRSR001415-3}. FT ACT_SITE 196 196 Schiff-base intermediate with substrate. FT {ECO:0000256|PIRSR:PIRSR001415-1}. FT ACT_SITE 249 249 Schiff-base intermediate with substrate. FT {ECO:0000256|PIRSR:PIRSR001415-1}. FT METAL 121 121 Zinc; catalytic. FT {ECO:0000256|PIRSR:PIRSR001415-3}. FT METAL 123 123 Zinc; catalytic. FT {ECO:0000256|PIRSR:PIRSR001415-3}. FT METAL 131 131 Zinc; catalytic. FT {ECO:0000256|PIRSR:PIRSR001415-3}. FT BINDING 206 206 Substrate 1. FT {ECO:0000256|PIRSR:PIRSR001415-2}. FT BINDING 218 218 Substrate 1. FT {ECO:0000256|PIRSR:PIRSR001415-2}. FT BINDING 275 275 Substrate 2. FT {ECO:0000256|PIRSR:PIRSR001415-2}. FT BINDING 314 314 Substrate 2. FT {ECO:0000256|PIRSR:PIRSR001415-2}. SQ SEQUENCE 326 AA; 35863 MW; 2D44C271090F6E98 CRC64; MSFPTRRLRR LRTSEKMREL VQETRLSPSD LICPIFVQED IKTRIKIESM PSIERLPLDD VTDEVGTISD LGIPAIMLFG IPSNKDETGS SAFDDNGIVQ KAISQVRENF GDKIVIMADT CLCQFTSTGH CGVISNNKVD NDASLELLAK TAVSQAKAGM DTSSPSAMMD GQVAAIRNAL DDEGFSDVSI MSHAAKHRSN FYSPFRDAAA CAPEFGDRKT YQMPYTNARE AMMEVETDIN EGVDIVMIKP ALSYLDLISE TRRRFNIPVA AYSVSGEYAL VKAASQLGYV NENEVTDEIL SSIKRAGADM IVTYFAKSAA KFMQES // ID A9A3B7_NITMS Unreviewed; 245 AA. AC A9A3B7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ABX12546.1}; GN OrderedLocusNames=Nmar_0650 {ECO:0000313|EMBL:ABX12546.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12546.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12546.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12546.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12546.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3B7; -. DR STRING; 436308.Nmar_0650; -. DR EnsemblBacteria; ABX12546; ABX12546; Nmar_0650. DR KEGG; nmr:Nmar_0650; -. DR eggNOG; arCOG00062; Archaea. DR eggNOG; COG0388; LUCA. DR OMA; GCISESD; -. DR BioCyc; NMAR436308:GI3J-675-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0016746; F:transferase activity, transferring acyl groups; IEA:UniProtKB-KW. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.60.110.10; -; 1. DR InterPro; IPR003010; C-N_Hydrolase. DR InterPro; IPR001110; UPF0012_CS. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR PROSITE; PS50263; CN_HYDROLASE; 1. DR PROSITE; PS01227; UPF0012; 1. PE 4: Predicted; KW Acyltransferase {ECO:0000313|EMBL:ABX12546.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lipoprotein {ECO:0000313|EMBL:ABX12546.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12546.1}. FT DOMAIN 2 245 CN hydrolase. FT {ECO:0000259|PROSITE:PS50263}. SQ SEQUENCE 245 AA; 28202 MW; B70A4FE3B3F91D96 CRC64; MVKLGMIQTV SYQNNQKGID RVSQILRKLG RQETDIVCLP EQWLKENIIS DFDTEFSEFK DISRDFSMTI IPGAFYENNK KKSSIIAPVI GPEGEFIGRQ EKIHPFDYER DTVTPGKEAK IFNTACKFGV VICYDMVFPQ VANTLTKKGA QVLLSPSRIV RRGIESWHMY VQVRALENRI PILAANVENR RFGGESLIVD LAENNKVVNT KLTKLKKEKS VSKEFKLEKY QKSRKNRFSD ANKFR // ID A9A616_NITMS Unreviewed; 113 AA. AC A9A616; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13494.1}; GN OrderedLocusNames=Nmar_1598 {ECO:0000313|EMBL:ABX13494.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13494.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13494.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13494.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13494.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1598; -. DR EnsemblBacteria; ABX13494; ABX13494; Nmar_1598. DR KEGG; nmr:Nmar_1598; -. DR eggNOG; arCOG08790; Archaea. DR eggNOG; ENOG41110J5; LUCA. DR OMA; ERISTRM; -. DR BioCyc; NMAR436308:GI3J-1642-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 113 AA; 12491 MW; 3A9871EDB0C7B84C CRC64; MNSPNGFFQK LVNLEGRNFS LSIQKFDNGY FISVAEGSNK IGSMVASIAT GPTPITTTII PSRTESLFLK LVSERISTRM RGIALVSAFI QKELEPNTAK DLMSEIMEMI ENE // ID A9A157_NITMS Unreviewed; 526 AA. AC A9A157; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12018.1}; GN OrderedLocusNames=Nmar_0118 {ECO:0000313|EMBL:ABX12018.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12018.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12018.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12018.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12018.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0118; -. DR EnsemblBacteria; ABX12018; ABX12018; Nmar_0118. DR KEGG; nmr:Nmar_0118; -. DR eggNOG; arCOG00567; Archaea. DR eggNOG; ENOG411250H; LUCA. DR BioCyc; NMAR436308:GI3J-121-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 89 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 101 118 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 148 167 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 173 202 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 214 233 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 278 299 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 308 326 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 332 349 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 361 379 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 526 AA; 61554 MW; 18AD04C3BDCD9F5F CRC64; MQEKSSINKY FNSDILKPKI FLALFGIFFS AIIIRLAYVN FEVPLTLDSL EYFFYASDIL ITGKIPNDYT IANNGWAMLL SGIFWFFQFE NIINYMNLQK IISISISSLT IFPIYIFARK YVSIKHSILG AFIFAIEPHL IQNSLFGISD SLYIFLIVIS FCFFISNNKK LNYLAFLIAG FSTIVRSEGL FLMLGLSIMF IIKYKNEKFV FPKYTIALAL FLLVVLPMSY YKYDVKGEDG IFMRAGNSFL KHTDIVPESN VNSGFPFIHT GIENYSKFFV WNMIPIFGFF VPFGIYFLLK NRNFEKKFLI VSAITMSLPT FYAYSIPLLD GRYFYFLFPI FCIVSLLAIE KFSIKMKNEN IIIICIIIGI TIASNYYLYE KINNEHEIEV LKIAKIISMD KKIINSFLPE EKYIEVTTLP EKWNEFTEIF EKRYKGKSIR STLDHNVNTV LVNEKNSLEE YMVFFRETNI SHIIVDDKND LAIFDDIHAN EENYSFLIKE FDSKEENFSY HLKIFKIDFE NFEEGK // ID A9A288_NITMS Unreviewed; 138 AA. AC A9A288; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12799.1}; GN OrderedLocusNames=Nmar_0903 {ECO:0000313|EMBL:ABX12799.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12799.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12799.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12799.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12799.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12799; ABX12799; Nmar_0903. DR KEGG; nmr:Nmar_0903; -. DR eggNOG; arCOG08754; Archaea. DR eggNOG; ENOG4110ZS0; LUCA. DR BioCyc; NMAR436308:GI3J-931-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 138 AA; 16499 MW; 3BF0C34FD85C1C10 CRC64; MSEKSQNNDF ELFENINKKY FLELEQNVPH IQQTLFDLQN EYYKLWKNYV NSQLSLQKEF FNKSGLDYSF PDTAKDIIKN MSDETIKFRS ILHKMAIANV EQNKNYAKTL NDNSDTFVDL NKKIMQNWIS MFKTNQNS // ID A9A2V1_NITMS Unreviewed; 164 AA. AC A9A2V1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=Nicotinamide-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00243}; DE EC=2.7.7.1 {ECO:0000256|HAMAP-Rule:MF_00243}; DE AltName: Full=NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00243}; DE AltName: Full=NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00243}; DE AltName: Full=NMN adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00243}; GN OrderedLocusNames=Nmar_1732 {ECO:0000313|EMBL:ABX13628.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13628.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13628.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13628.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + nicotinamide ribonucleotide = CC diphosphate + NAD(+). {ECO:0000256|HAMAP-Rule:MF_00243}. CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from CC nicotinamide D-ribonucleotide: step 1/1. {ECO:0000256|HAMAP- CC Rule:MF_00243}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00243}. CC -!- SIMILARITY: Belongs to the archaeal NMN adenylyltransferase CC family. {ECO:0000256|HAMAP-Rule:MF_00243}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13628.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2V1; -. DR STRING; 436308.Nmar_1732; -. DR EnsemblBacteria; ABX13628; ABX13628; Nmar_1732. DR KEGG; nmr:Nmar_1732; -. DR eggNOG; arCOG00972; Archaea. DR eggNOG; COG1056; LUCA. DR HOGENOM; HOG000108858; -. DR KO; K00952; -. DR OMA; QSHTREN; -. DR BioCyc; NMAR436308:GI3J-1777-MONOMER; -. DR UniPathway; UPA00253; UER00600. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0000309; F:nicotinamide-nucleotide adenylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00243; NMN_adenylyltr; 1. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR006418; NMN_Atrans_arc. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF01467; CTP_transf_like; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00243}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00243}; KW NAD {ECO:0000256|HAMAP-Rule:MF_00243}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00243}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00243, KW ECO:0000313|EMBL:ABX13628.1}; KW Pyridine nucleotide biosynthesis {ECO:0000256|HAMAP-Rule:MF_00243}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00243, KW ECO:0000313|EMBL:ABX13628.1}. FT DOMAIN 5 131 CTP_transf_like. FT {ECO:0000259|Pfam:PF01467}. SQ SEQUENCE 164 AA; 18866 MW; B619AD86E2FD38CC CRC64; MNGLLIGRFQ PFHLGHLEAL RFALSKVDKL WLGLGSSNKP TEKNNPFSAE ERKEMILSSI DDSMKEKISI YFIPDLDNHV RWIKKIDAIV PDFDIVFSND ELTNHLYSKR DVQVLSIPFL KRDELSGTNV RDLIISDQNW NALVPKGTEN FLISNNAKER LKNL // ID A9A4C8_NITMS Unreviewed; 80 AA. AC A9A4C8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12617.1}; GN OrderedLocusNames=Nmar_0721 {ECO:0000313|EMBL:ABX12617.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12617.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12617.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12617.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12617.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0721; -. DR EnsemblBacteria; ABX12617; ABX12617; Nmar_0721. DR KEGG; nmr:Nmar_0721; -. DR eggNOG; arCOG10537; Archaea. DR eggNOG; ENOG4110ZM8; LUCA. DR BioCyc; NMAR436308:GI3J-747-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR InterPro; IPR007527; Znf_SWIM. DR PROSITE; PS50966; ZF_SWIM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 26 77 SWIM-type. {ECO:0000259|PROSITE:PS50966}. SQ SEQUENCE 80 AA; 8950 MW; 000C7FAD25A673F4 CRC64; MSANTIRKAK KLVEAGGVVK LEDDLFQVKS SSNPEQSYIV TSDTCECPGF KNFYKFHHGK GLKANCSHLE AIRIFKKENS // ID A9A2L8_NITMS Unreviewed; 99 AA. AC A9A2L8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13257.1}; GN OrderedLocusNames=Nmar_1361 {ECO:0000313|EMBL:ABX13257.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13257.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13257.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13257.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13257.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13257; ABX13257; Nmar_1361. DR KEGG; nmr:Nmar_1361; -. DR eggNOG; arCOG10582; Archaea. DR eggNOG; ENOG41110MP; LUCA. DR BioCyc; NMAR436308:GI3J-1395-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 99 AA; 11337 MW; E7F513BF2C45E096 CRC64; MYDQLKPWVI VSSIGDDASE KDIERIRPKI ISLVDDWQSS KGTMWSGSFN NQPSSMAVFE ATEQDAKKFY AEYSKECDGV LVHHMYQWDA MPILSVLSK // ID A9A3K0_NITMS Unreviewed; 135 AA. AC A9A3K0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12932.1}; GN OrderedLocusNames=Nmar_1036 {ECO:0000313|EMBL:ABX12932.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12932.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12932.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12932.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12932.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1036; -. DR EnsemblBacteria; ABX12932; ABX12932; Nmar_1036. DR KEGG; nmr:Nmar_1036; -. DR eggNOG; arCOG08725; Archaea. DR eggNOG; ENOG411100S; LUCA. DR HOGENOM; HOG000107780; -. DR OMA; THDVAWS; -. DR BioCyc; NMAR436308:GI3J-1067-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 44 63 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 135 AA; 15701 MW; 4ED36C78AF686603 CRC64; MIFQKIFDWK TYIFTALAVI SFSNFMAVLF GQTIPNVVLD FFKVAGEYVV LGAVFVFALA WLLKAKPHNR PKQYSVVVFD VYGKKSQIDG LRTEFKTHDV AWSFMKQYKK SYPLYNFALV SDLPKSDKPT IFRYI // ID A9A2M4_NITMS Unreviewed; 398 AA. AC A9A2M4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13263.1}; GN OrderedLocusNames=Nmar_1367 {ECO:0000313|EMBL:ABX13263.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13263.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13263.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13263.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13263.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1367; -. DR EnsemblBacteria; ABX13263; ABX13263; Nmar_1367. DR KEGG; nmr:Nmar_1367; -. DR eggNOG; arCOG08650; Archaea. DR eggNOG; ENOG41110BB; LUCA. DR HOGENOM; HOG000105470; -. DR OMA; AKYLVYS; -. DR BioCyc; NMAR436308:GI3J-1401-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 398 AA; 45866 MW; C4CD30D7DB1F6ED4 CRC64; MGEYEEFAEA LFGQLSVEID EEKEISSLAV KAKEDLAGKV EFKDIEEITK DVVPQFKEKI KDFLGIEVPN NIEFKFPELE DLKRLKGEKV FADNESKEFV RDLFDAVAKE NNAKIAELMK KDTAKYLVYS TYAIQYISKI TTTYGDYLDG VIYLNRFILS RYPQIILHKQ GEPYESRFEN VNSGYTGGIK MAVLEELIHS TQEKLHQINK DAAMQVNKIN EELAGIILEL DTETVNMLAE YCQLQTVPDD FPFAKRANLF FFLNPDHFLI EQIGPDVMTF THVEMDPKIK EAIPQLLDIY KRWLAPIQHH HAAFTAMEGM AGFAIENILK DDQDFQNYLT TFMGTDFSSY QVRKSMGKDF TKAIYEKLGS NTFKKIIDIP PNTRELKDPQ LYLSKLSQ // ID A9A2F8_NITMS Unreviewed; 227 AA. AC A9A2F8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13197.1}; GN OrderedLocusNames=Nmar_1301 {ECO:0000313|EMBL:ABX13197.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13197.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13197.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13197.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13197.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2F8; -. DR STRING; 436308.Nmar_1301; -. DR EnsemblBacteria; ABX13197; ABX13197; Nmar_1301. DR KEGG; nmr:Nmar_1301; -. DR eggNOG; arCOG01904; Archaea. DR eggNOG; COG1339; LUCA. DR HOGENOM; HOG000015512; -. DR KO; K07732; -. DR OMA; RHYISLP; -. DR BioCyc; NMAR436308:GI3J-1334-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008531; F:riboflavin kinase activity; IEA:InterPro. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.40.30.30; -; 1. DR InterPro; IPR015865; Riboflavin_kinase_bac/euk. DR InterPro; IPR023602; Riboflavin_kinase_CTP-dep. DR InterPro; IPR023465; Riboflavin_kinase_domain. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01982; CTP-dep_RFKase; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF82114; SSF82114; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 102 223 CTP-dep_RFKase. FT {ECO:0000259|Pfam:PF01982}. SQ SEQUENCE 227 AA; 25370 MW; D3E2AEB3D9A043E0 CRC64; MPELKIQHIL TLSYLLSKGA KHNYVSITTS SLGKSIKKSQ QAASKHLLEL EQNQFIDRIM SGRNVSVKIT PKGFSEMVKL STTLQKSLNS FPSHVELKGT LVSGMGEGAY YMGLKGYTKQ FKSKIGYVPF PGTLNVRLDK KIHQEAVKQF ETLDGIKIKS FSDGKRTYGW VKCFPAKLNN SINCDMILLE RTHHDNSVVE LISKTCMRKT GKLKDGSKIT IKIPISS // ID A9A5P6_NITMS Unreviewed; 122 AA. AC A9A5P6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 60. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX13051.1}; GN OrderedLocusNames=Nmar_1155 {ECO:0000313|EMBL:ABX13051.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13051.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13051.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13051.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH arsR-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000711}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13051.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5P6; -. DR STRING; 436308.Nmar_1155; -. DR EnsemblBacteria; ABX13051; ABX13051; Nmar_1155. DR KEGG; nmr:Nmar_1155; -. DR eggNOG; arCOG01681; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000144506; -. DR OMA; GRYVYYR; -. DR BioCyc; NMAR436308:GI3J-1187-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR PRINTS; PR00778; HTHARSR. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS50987; HTH_ARSR_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000711}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000711}; KW Transcription regulation {ECO:0000256|RuleBase:RU000711}. FT DOMAIN 17 111 HTH arsR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50987}. SQ SEQUENCE 122 AA; 13825 MW; EC71786C7867F9BC CRC64; MFYLYNIISL IDDMLKMVND KLELKAKLFR GFGDVTRLAI LESVSDGEKT VTEIAEKLKQ SQPNVSNHLS CLLECGLVKS RKDGKNRFYS IGDKRVAKLL KQSDDILTDI ADGIYSCVNY KK // ID A9A1P5_NITMS Unreviewed; 163 AA. AC A9A1P5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Iron (Metal) dependent repressor, DtxR family {ECO:0000313|EMBL:ABX13560.1}; GN OrderedLocusNames=Nmar_1664 {ECO:0000313|EMBL:ABX13560.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13560.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13560.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13560.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13560.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1P5; -. DR STRING; 436308.Nmar_1664; -. DR EnsemblBacteria; ABX13560; ABX13560; Nmar_1664. DR KEGG; nmr:Nmar_1664; -. DR eggNOG; arCOG02100; Archaea. DR eggNOG; COG1321; LUCA. DR HOGENOM; HOG000040349; -. DR OMA; CPYVLKQ; -. DR BioCyc; NMAR436308:GI3J-1709-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0046914; F:transition metal ion binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 1.10.60.10; -; 1. DR InterPro; IPR001367; Fe_dep_repressor. DR InterPro; IPR022687; HTH_DTXR. DR InterPro; IPR022689; Iron_dep_repressor. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02742; Fe_dep_repr_C; 1. DR Pfam; PF01325; Fe_dep_repress; 1. DR SMART; SM00529; HTH_DTXR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF47979; SSF47979; 1. DR PROSITE; PS50944; HTH_DTXR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 30 91 HTH dtxR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50944}. SQ SEQUENCE 163 AA; 18711 MW; 1CF109B12EBC3352 CRC64; MVSKSNIKIS DKKEKRLESI KKAHGKKNTF TTTMEDYLEV ISELVELKGY ASPTDISNYM NVRPPSVTKM LRRLDADGYL EYTKYQGLKL TSKGMNIAND IRQKHSDLLD FFEIIGVDSS IANKDVEGIE HHMNPKTMKQ LRKFTTFLKS NPNLLLSFNK ANF // ID A9A1K4_NITMS Unreviewed; 55 AA. AC A9A1K4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13183.1}; GN OrderedLocusNames=Nmar_1287 {ECO:0000313|EMBL:ABX13183.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13183.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13183.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13183.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13183.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1287; -. DR EnsemblBacteria; ABX13183; ABX13183; Nmar_1287. DR KEGG; nmr:Nmar_1287; -. DR eggNOG; ENOG4102TR0; Archaea. DR eggNOG; ENOG410XXG3; LUCA. DR HOGENOM; HOG000105320; -. DR KO; K05826; -. DR OMA; CGESIEM; -. DR BioCyc; NMAR436308:GI3J-1320-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 55 AA; 5787 MW; 7F26BB5DF2942447 CRC64; MNCPECDATL NIPDDAAVGE IVSCPDCGAD FEIAKKDGSN VELKQAESVG EDWGE // ID A9A253_NITMS Unreviewed; 183 AA. AC A9A253; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:ABX12466.1}; DE EC=3.2.2.20 {ECO:0000313|EMBL:ABX12466.1}; GN OrderedLocusNames=Nmar_0570 {ECO:0000313|EMBL:ABX12466.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12466.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12466.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12466.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12466.1; -; Genomic_DNA. DR ProteinModelPortal; A9A253; -. DR STRING; 436308.Nmar_0570; -. DR EnsemblBacteria; ABX12466; ABX12466; Nmar_0570. DR KEGG; nmr:Nmar_0570; -. DR eggNOG; arCOG06523; Archaea. DR eggNOG; COG2818; LUCA. DR HOGENOM; HOG000220753; -. DR KO; K01246; -. DR OMA; YVAYHDT; -. DR BioCyc; NMAR436308:GI3J-593-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008725; F:DNA-3-methyladenine glycosylase activity; IEA:UniProtKB-EC. DR GO; GO:0006284; P:base-excision repair; IEA:InterPro. DR Gene3D; 1.10.340.30; -; 1. DR InterPro; IPR005019; Adenine_glyco. DR InterPro; IPR011257; DNA_glycosylase. DR Pfam; PF03352; Adenine_glyco; 1. DR SUPFAM; SSF48150; SSF48150; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosidase {ECO:0000313|EMBL:ABX12466.1}; KW Hydrolase {ECO:0000313|EMBL:ABX12466.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 183 AA; 21237 MW; 4329F13C6A4B57C8 CRC64; MKRCKWATEE PNITYHDKEW GRPQHNDQKL FEFLVLEGAQ AGLSWVTILK RRNGYKKAFS DFDVLKVSKY SEKRILKLLQ DESIIRNKLK INSAVNNAKQ FLKIQEEFGS FDKYLWSFVN GKPIKNKFKK LSDLPASTEI SEKLSKDLKK HGFSFVGPTI CYALMQAIGM VNDHTTECFL HGK // ID A9A2G0_NITMS Unreviewed; 116 AA. AC A9A2G0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:ABX13199.1}; GN OrderedLocusNames=Nmar_1303 {ECO:0000313|EMBL:ABX13199.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13199.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13199.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13199.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13199.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G0; -. DR STRING; 436308.Nmar_1303; -. DR EnsemblBacteria; ABX13199; ABX13199; Nmar_1303. DR KEGG; nmr:Nmar_1303; -. DR eggNOG; arCOG04560; Archaea. DR eggNOG; COG0316; LUCA. DR HOGENOM; HOG000228313; -. DR KO; K13628; -. DR OMA; FDENVND; -. DR BioCyc; NMAR436308:GI3J-1336-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0016226; P:iron-sulfur cluster assembly; IEA:InterPro. DR Gene3D; 2.60.300.12; -; 1. DR InterPro; IPR000361; FeS_biogenesis. DR InterPro; IPR016092; FeS_cluster_insertion. DR InterPro; IPR017870; FeS_cluster_insertion_CS. DR Pfam; PF01521; Fe-S_biosyn; 1. DR SUPFAM; SSF89360; SSF89360; 1. DR TIGRFAMs; TIGR00049; TIGR00049; 1. DR PROSITE; PS01152; HESB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 110 Fe-S_biosyn. {ECO:0000259|Pfam:PF01521}. SQ SEQUENCE 116 AA; 12745 MW; 93D8CCCAA047C79D CRC64; MATEQTQKMI TVTEKAAEKI KEFMKEEAES PEYLRVYVQG GGCSGLSYGM GFEKAPEEDD IVMEENGVKL LVDSYSVDHL QGANVDYIES LMGSGFKINN PNVTKSCSCG HSFSTE // ID A9A4D2_NITMS Unreviewed; 226 AA. AC A9A4D2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12621.1}; GN OrderedLocusNames=Nmar_0725 {ECO:0000313|EMBL:ABX12621.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12621.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12621.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12621.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12621.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4D2; -. DR STRING; 436308.Nmar_0725; -. DR EnsemblBacteria; ABX12621; ABX12621; Nmar_0725. DR KEGG; nmr:Nmar_0725; -. DR eggNOG; arCOG00348; Archaea. DR eggNOG; COG2047; LUCA. DR KO; K07159; -. DR OMA; CQDVIDV; -. DR BioCyc; NMAR436308:GI3J-751-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR019151; Proteasome_assmbl_chaperone_2. DR Pfam; PF09754; PAC2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 226 AA; 25618 MW; D0937C18E432BA3B CRC64; MDFRQDQEPD VEKPIIIAAM QDMGNVGSIV INFINESLRT KTFRISTTPF PTYVVDRGGY IDLPDESWEY RYTDDLIIFG GGKGQPQSTA ELNALCQDVI DVAKKYSTKF IYTLGGFHTN RPYKNNPKTY ITTTSRELTK QMEGLGVDMT PQKSIITGFN GLILGFAKKN EIHGIGMYGE LNEPEIPQYR AAISIIKTLE KLTYRKFGDT SKLEVMAQEI ERKFKS // ID A9A171_NITMS Unreviewed; 258 AA. AC A9A171; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12357.1}; GN OrderedLocusNames=Nmar_0461 {ECO:0000313|EMBL:ABX12357.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12357.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12357.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12357.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12357.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12357; ABX12357; Nmar_0461. DR KEGG; nmr:Nmar_0461; -. DR eggNOG; arCOG10526; Archaea. DR eggNOG; ENOG41111RF; LUCA. DR BioCyc; NMAR436308:GI3J-480-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 18 37 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 65 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 77 97 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 109 130 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 160 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 195 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 202 221 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 233 252 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 258 AA; 29129 MW; 19B8EE951B0F1981 CRC64; MGEPDVVPER LSNPLNRYII FGILVAGVII FTSMNVFNED DVSIFAFVIS VSLTICLSIF CFIVSKKHET GLLAKSYLSL GLGFTSYLVA ELLYYTFDLI LGIEAYPSIA DIFFFALYPF VLGHLLLNIR YFHSGYTTLE KIWIPIIPII ALIVYVALSL SIPDAELNFD FYYGFIFVTG ASFTLSFTIL GASIFRQGIL GAVWLLLVIG LMINAAGDVW YYHLEIFGLY FDAHPVTTVW YVANMFIIYA LWKQLKTT // ID A9A3L3_NITMS Unreviewed; 210 AA. AC A9A3L3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12945.1}; GN OrderedLocusNames=Nmar_1049 {ECO:0000313|EMBL:ABX12945.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12945.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12945.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12945.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12945.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1049; -. DR EnsemblBacteria; ABX12945; ABX12945; Nmar_1049. DR KEGG; nmr:Nmar_1049; -. DR eggNOG; arCOG10571; Archaea. DR eggNOG; ENOG41110V8; LUCA. DR BioCyc; NMAR436308:GI3J-1080-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 210 AA; 23444 MW; 7A1E45853B6EAEC7 CRC64; MNKLIIIPII LGIAAVASYA MLIPEESTES LTTPIYNSGF TYYDIEDIQT SLKEHDIFVS SPTAITDHTI SQYCTFFEKG LPKNVEYCTT TAVLNSNGDT IGNINVGGST ASPIMAIANL ETNTLESDKE MTYAIFETVI QTLVCDCWEE ESTEFESIPE WLDAVHTFYY DSDKRNIKSK IDNLADTEIL LEITTKDDSV LQTLIITKHL // ID A9A463_NITMS Unreviewed; 553 AA. AC A9A463; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABX12247.1}; GN OrderedLocusNames=Nmar_0351 {ECO:0000313|EMBL:ABX12247.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12247.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12247.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12247.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12247.1; -; Genomic_DNA. DR ProteinModelPortal; A9A463; -. DR STRING; 436308.Nmar_0351; -. DR EnsemblBacteria; ABX12247; ABX12247; Nmar_0351. DR KEGG; nmr:Nmar_0351; -. DR eggNOG; arCOG03032; Archaea. DR eggNOG; COG0457; LUCA. DR BioCyc; NMAR436308:GI3J-366-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR SMART; SM00028; TPR; 3. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 3. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 375 513 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 553 AA; 61616 MW; F97715A9E385F83A CRC64; MRLILGITLV LTAFTPLAFN DVFADSFNVS FNQDSYQTGD TLVISGQIID FGMPVIAMSI FDPDEKILTA NSLELSSDGS FSKTIPLESP FYEMSGDYLI KLDYGQVTEE HNFVIGDIIS ESEIAPQEVV ALEIMSLYTE KEHYFDGDTV NIFGTVSSID SPTILIGVHD PFGTPAGFYF GNINNNLEFS TNFLIKDGVN FKAEGTYSIK AHYAETSVEY FFEYSAESST ETQTTEDTTQ TTEDTTQTTE DTTQTTEDTT QTTEDTTQTT EDTTQTTEDT TQTTEDTTQT TEDNIPRESV EEKIVSQNEA ITETINEKTE TETKIITKET QTKNDSENIL ENEEHDNLSV EDIELGKLLN QINLDCDSST FVDTISYYDG MGPALYRLCQ FDSSLNFFNE SLTSDPDNVE ILVNKGSTLG KIGFVSEAIA YYDHAISLDP QYLPAKNNKA NALANLGNLD DAILLYNEIL EENTNYYTAR TNLNTALLLK SETSETSDVI STVKSEIETS PENTSPENIF PEKTISTENK NETQSNFFEE LTRVFSSLFG FTE // ID A9A2S5_NITMS Unreviewed; 411 AA. AC A9A2S5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABX13602.1}; GN OrderedLocusNames=Nmar_1706 {ECO:0000313|EMBL:ABX13602.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13602.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13602.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13602.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13602.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2S5; -. DR STRING; 436308.Nmar_1706; -. DR EnsemblBacteria; ABX13602; ABX13602; Nmar_1706. DR KEGG; nmr:Nmar_1706; -. DR eggNOG; arCOG04430; Archaea. DR eggNOG; COG1078; LUCA. DR HOGENOM; HOG000077960; -. DR KO; K06885; -. DR OMA; EHSLGAW; -. DR BioCyc; NMAR436308:GI3J-1751-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 1.10.3210.10; -; 1. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR006674; HD_domain. DR Pfam; PF01966; HD; 1. DR SMART; SM00471; HDc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13602.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 50 180 HDc. {ECO:0000259|SMART:SM00471}. SQ SEQUENCE 411 AA; 46867 MW; FEF88CFDEA71F1F4 CRC64; MKKNYLDIID PIHDFIRVYD HELSIIDNPI FQRLRRIRQL SGAHLTYPAA QHTRFEHSLG VMHIASQAGH ALNEKGFFKS DDIEILRLAG LLHDIGHGPF SHLFEEIIQE KKISHEDFGK EIILKSEIGD ILTKNGFDKK LVTKIAFGDS KFQYMNEIVS GALSADMMDY LLRDGYFTGA EHAKIDHKRI TQSLDVHQKK LALERSALYS FESMMHSRYQ MFKAVYFHKT VRAAEVMLLE ALRSSDDEFG FSTFNLDEFV QLTDEHVLSS LISSKTPKLK RARKFAQDYQ NRKLLKCVFE SILTSRKNLK KIKTNELRSA ISKKSKVDEN EIFVDSSVTP SIPLAPSKNE SKSIILITNE GGKSSAKEMP ISEIPVVSAI SGFMNILRIY TNQKNRKKVE IAAKSIIGEL E // ID A9A482_NITMS Unreviewed; 115 AA. AC A9A482; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12571.1}; GN OrderedLocusNames=Nmar_0675 {ECO:0000313|EMBL:ABX12571.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12571.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12571.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12571.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12571.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0675; -. DR EnsemblBacteria; ABX12571; ABX12571; Nmar_0675. DR KEGG; nmr:Nmar_0675; -. DR BioCyc; NMAR436308:GI3J-700-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0044238; P:primary metabolic process; IEA:InterPro. DR Gene3D; 3.30.160.100; -; 1. DR InterPro; IPR003489; Ribosomal_S30Ae/sigma54_mod. DR Pfam; PF02482; Ribosomal_S30AE; 1. DR SUPFAM; SSF69754; SSF69754; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 13209 MW; 3B0782305F3F716F CRC64; MTEVPLYITG LSKDDLANQT LFSKFGAALE KVQPVLPDVI EAKIDVKTQN IEGARTHYDV TATIKASKNH LVYTESDWDI IKIADELCRK LERELSKHDD KRQRDSVRKR DVRNL // ID A9A4J3_NITMS Unreviewed; 1206 AA. AC A9A4J3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 37. DE SubName: Full=Chromosome segregation ATPase-like protein {ECO:0000313|EMBL:ABX12971.1}; GN OrderedLocusNames=Nmar_1075 {ECO:0000313|EMBL:ABX12971.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12971.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12971.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12971.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12971.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1075; -. DR EnsemblBacteria; ABX12971; ABX12971; Nmar_1075. DR KEGG; nmr:Nmar_1075; -. DR eggNOG; arCOG00371; Archaea. DR eggNOG; ENOG4111W2T; LUCA. DR OMA; EALWQEQ; -. DR BioCyc; NMAR436308:GI3J-1106-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 136 302 {ECO:0000256|SAM:Coils}. FT COILED 305 364 {ECO:0000256|SAM:Coils}. FT COILED 391 450 {ECO:0000256|SAM:Coils}. FT COILED 464 512 {ECO:0000256|SAM:Coils}. FT COILED 515 574 {ECO:0000256|SAM:Coils}. FT COILED 578 605 {ECO:0000256|SAM:Coils}. FT COILED 610 637 {ECO:0000256|SAM:Coils}. FT COILED 640 699 {ECO:0000256|SAM:Coils}. FT COILED 703 762 {ECO:0000256|SAM:Coils}. FT COILED 771 823 {ECO:0000256|SAM:Coils}. FT COILED 833 885 {ECO:0000256|SAM:Coils}. FT COILED 889 962 {ECO:0000256|SAM:Coils}. FT COILED 1044 1089 {ECO:0000256|SAM:Coils}. FT COILED 1150 1177 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1206 AA; 139087 MW; 1BED4A5C49752ABB CRC64; MVNLSTEDTV TFLEDLIAQN KGDVGRLRHI LNSIKNNKVL AKSDKQYLEE KVEQEYTADE TQPPEQSIDF ISKLVSEGFG DSNRLRYILH SLKQGKTIHA SDKNYLDSVT QSYYAEVAQK KSSESTTVSS TIDEEHKQKQ SELDALKKTY ESSQTELQES KKQLEEKIYS QQSELERLRG ERDLAKKEAE FESKKVVEQA ELEEKIKQQQ EELSQLSRDY SVATRKASLE KAKLEEQIHV QQAELERLAQ DREETEHKMS LEKAKLEKMK LEEKIATQQT QLEKLAKDRE LLAKKSEQET NDLEKISLTE QIRAQEAELE KMAHDYESVK RKATADKAML EEKIQTLQVE LKAISEERST FEKKLASEKA ALEEQLYIQQ VQLENLSKSN SINNEQQITD LENNLQEKQA EIDTINKQHQ SKIEQIQSEK IALQNKIQSQ QAELDATKSK SSSAKMESQL QSQVDDYKKK HAQLDDIMKE YQAVMSKSQS EKTALHEKIQ TLQAELDATK SKSISPELES KLTLQKEQLQ EKQAEIYSLT RQHQSKLEQV QSEKTALQKQ LDSKQAELEE IKSKPTISPE LESQLALQKE QLESKQAEID TITKQHQSKL EQVQSEKTTL QKLLEVQKAE LEELKSKSPS PELESQLALQ KEQLESKQAE IDTITKQHQS KLEQVQSEKI ALQNKIEFQQ TKLEEIKSKP TSYPKLESQL ALQKEQLESK QAEIDALTKQ HQSKLEQVQS EKTALQKQLE SKQAELDTIQ SKSSPKLESQ LTLERQELQK KQAEIDALTK QHQSKLEQVQ SEKTALQNKV KFQQSKLEEL KSKSPSSKIE SQLTLEREQL ESKQAEIDTI TKQYQSKLEQ VQSEKTALQN KVKFQQSQLE EIKSKPTSYP ELESKLTLQK EQLESKQAEI DTITKQHQSK LEQIQSEKTA LQKQVNSQHA DLKKLTAERK ELEKKLSSKQ TSLVQSGQEE SVDKKPSWLS KILGKKSKAR PVDPVSLNEK LLQAQIKEAE AGATVTNDLR TQQIKLVELM KKRDEAEKKS QVISPALEKQ IQKLQDELEK FEQISVLAEQ RALKKKESLE AQISSLREKE FENKMRMESL EQEKIDLEKS HQDHEDQMIK LAEDEMQIID QIKREKAQIR RLLQTQVKLK EHMSKTSAEV QEELKEIEDQ ILFLINRQAE KPLSTDVIKS LESLNDKLNE VLSKNQ // ID A9A4T1_NITMS Unreviewed; 462 AA. AC A9A4T1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 56. DE SubName: Full=Phenylalanyl-tRNA synthetase, alpha subunit {ECO:0000313|EMBL:ABX13385.1}; GN OrderedLocusNames=Nmar_1489 {ECO:0000313|EMBL:ABX13385.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13385.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13385.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13385.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13385.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4T1; -. DR STRING; 436308.Nmar_1489; -. DR EnsemblBacteria; ABX13385; ABX13385; Nmar_1489. DR KEGG; nmr:Nmar_1489; -. DR eggNOG; arCOG00410; Archaea. DR eggNOG; COG0016; LUCA. DR HOGENOM; HOG000230293; -. DR KO; K01889; -. DR OMA; LYRNDIE; -. DR BioCyc; NMAR436308:GI3J-1527-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004826; F:phenylalanine-tRNA ligase activity; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR GO; GO:0006432; P:phenylalanyl-tRNA aminoacylation; IEA:InterPro. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004529; Phe-tRNA-synth_IIc_asu. DR InterPro; IPR002319; Phenylalanyl-tRNA_Synthase. DR Pfam; PF01409; tRNA-synt_2d; 1. DR TIGRFAMs; TIGR00468; pheS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 4: Predicted; KW Aminoacyl-tRNA synthetase {ECO:0000313|EMBL:ABX13385.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX13385.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 321 437 AA_TRNA_LIGASE_II. FT {ECO:0000259|PROSITE:PS50862}. SQ SEQUENCE 462 AA; 52514 MW; B5CF0806A7F57F43 CRC64; MLSQVFHDIE KKIITSLKDN PKQTPENLEK STKLSPDQIR RGIEWLKLKE LANVDESKSS IITLGKNGKE SLEKGLPERR FLDLLKTKSK LSDLQKELGP VFGPAMGLAR KNNWVDAAGD TITLKNPPDV LPGEKSLKQI GDSKLSADEL DSDDLAGLLK RPDFVVEEVV KTKQISLTDS AKSINLDASS GGIDVEAKVP EVFVARTHPL KDTIDEIREI FVTLGFSEIY GNMTQSSFWN FDALFTPQDH PARELQDTFY LDGISAKKIA TPDQIRKVSD SHKKNWRYQW DINEARKIVL RTHTTCVTIK HLAETKPDEA RVFSLGRVFR NEKVSYKHLV EFNQIEGVVV GKDANLRNLM GIQREFYKRI GITKIKFWPT FFPYTEPSLQ TMVYNERLGK WVELFGMGIF RPEVTKPLGI TKPVLAWGGG IERIAMLKYG LDDVREFYNN NLSWLRSATK CQ // ID A9A254_NITMS Unreviewed; 123 AA. AC A9A254; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12467.1}; GN OrderedLocusNames=Nmar_0571 {ECO:0000313|EMBL:ABX12467.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12467.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12467.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12467.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12467.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0571; -. DR EnsemblBacteria; ABX12467; ABX12467; Nmar_0571. DR KEGG; nmr:Nmar_0571; -. DR eggNOG; arCOG08826; Archaea. DR eggNOG; ENOG41126QF; LUCA. DR HOGENOM; HOG000110919; -. DR OMA; CMDGRIQ; -. DR BioCyc; NMAR436308:GI3J-594-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004089; F:carbonate dehydratase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR InterPro; IPR001765; Carbonic_anhydrase. DR SUPFAM; SSF53056; SSF53056; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 123 AA; 13437 MW; A9BA9B5600E13BD7 CRC64; MAEGTFATSV TCMDGRIQLP LAKWIKENYS VDYVDAITEP GVDKKVSDNS DLESIKTKVG ISINAHKSEL IVVSGHYDCA GNPVSDEEHK SQIKKGVEVI SSWNTGAKVI GVWVDDTWNI NVL // ID A9A4F1_NITMS Unreviewed; 77 AA. AC A9A4F1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12640.1}; GN OrderedLocusNames=Nmar_0744 {ECO:0000313|EMBL:ABX12640.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12640.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12640.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12640.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12640.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0744; -. DR EnsemblBacteria; ABX12640; ABX12640; Nmar_0744. DR KEGG; nmr:Nmar_0744; -. DR eggNOG; arCOG10538; Archaea. DR eggNOG; ENOG41110ED; LUCA. DR HOGENOM; HOG000110174; -. DR OMA; MSEDAAM; -. DR BioCyc; NMAR436308:GI3J-770-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 42 61 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 77 AA; 8251 MW; 7139D3334EE9C38A CRC64; MIIVGVIIGV TTGQGPTGHV GMTEEEIIDL MVAEDENQAL QLLYGLLIGV GFLLVLISFG ARRRKGSAKR TEKKPAE // ID A9A5Q4_NITMS Unreviewed; 76 AA. AC A9A5Q4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13059.1}; GN OrderedLocusNames=Nmar_1163 {ECO:0000313|EMBL:ABX13059.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13059.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13059.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13059.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13059.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13059; ABX13059; Nmar_1163. DR KEGG; nmr:Nmar_1163; -. DR BioCyc; NMAR436308:GI3J-1195-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 47 68 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 76 AA; 7930 MW; 9EB89832AE13D44E CRC64; MTAIMDKAKI SGIVGALGAL IAVAGGHTSM FLFAGFGLFF FTMMIQYGGI QFKIATSAAT LLGVAYFLNQ MGVINT // ID A9A224_NITMS Unreviewed; 238 AA. AC A9A224; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Nucleotidyl transferase {ECO:0000313|EMBL:ABX12437.1}; GN OrderedLocusNames=Nmar_0541 {ECO:0000313|EMBL:ABX12437.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12437.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12437.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12437.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12437.1; -; Genomic_DNA. DR ProteinModelPortal; A9A224; -. DR STRING; 436308.Nmar_0541; -. DR EnsemblBacteria; ABX12437; ABX12437; Nmar_0541. DR KEGG; nmr:Nmar_0541; -. DR eggNOG; arCOG00663; Archaea. DR eggNOG; COG1208; LUCA. DR HOGENOM; HOG000283478; -. DR KO; K00966; -. DR OMA; GCYVMEP; -. DR BioCyc; NMAR436308:GI3J-563-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR005835; NTP_transferase_dom. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00483; NTP_transferase; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12437.1}. FT DOMAIN 5 230 NTP_transferase. FT {ECO:0000259|Pfam:PF00483}. SQ SEQUENCE 238 AA; 27198 MW; 52F0F9C942CB114D CRC64; MILVKAVILA GGLGTRLRPL TLKTPKPMLP LGKKPILEHL IDWNKRNGVK SIVLCVSYRK EKIQDYFKDG KKFGVNIEYA VSKKPLATAG QLKTAEDFIN DTFVCVYGDS IFDFSLKNMI KQHKSKKAFT TMSLYEYKTN LQYGVINTTK TGKVTNWEEK PEIKANINMG CYVMEPNVLK YIPKNKPYGM DDVIKKAMKN KKMISGFITK KGFMDIGNKE SYKQANEEFA KKSKKRKK // ID A9A4P1_NITMS Unreviewed; 368 AA. AC A9A4P1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Succinate--CoA ligase (ADP-forming) {ECO:0000313|EMBL:ABX13019.1}; DE EC=6.2.1.5 {ECO:0000313|EMBL:ABX13019.1}; GN OrderedLocusNames=Nmar_1123 {ECO:0000313|EMBL:ABX13019.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13019.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13019.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13019.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13019.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4P1; -. DR STRING; 436308.Nmar_1123; -. DR EnsemblBacteria; ABX13019; ABX13019; Nmar_1123. DR KEGG; nmr:Nmar_1123; -. DR eggNOG; arCOG01337; Archaea. DR eggNOG; COG0045; LUCA. DR HOGENOM; HOG000007059; -. DR KO; K01903; -. DR OMA; PNYHKAQ; -. DR BioCyc; NMAR436308:GI3J-1154-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0004775; F:succinate-CoA ligase (ADP-forming) activity; IEA:UniProtKB-EC. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.261; -; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013650; ATP-grasp_succ-CoA_synth-type. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR005811; CoA_ligase. DR InterPro; IPR017866; Succ-CoA_synthase_bsu_CS. DR InterPro; IPR005809; Succ_CoA_synthase_bsu. DR InterPro; IPR016102; Succinyl-CoA_synth-like. DR PANTHER; PTHR11815; PTHR11815; 1. DR Pfam; PF08442; ATP-grasp_2; 1. DR Pfam; PF00549; Ligase_CoA; 1. DR PIRSF; PIRSF001554; SucCS_beta; 1. DR SUPFAM; SSF52210; SSF52210; 1. DR PROSITE; PS50975; ATP_GRASP; 1. DR PROSITE; PS01217; SUCCINYL_COA_LIG_3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX13019.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 219 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 368 AA; 40324 MW; 6DEC3D114DBF6EEC CRC64; MQLLEFQAKE LFREYGINLL DSISSTNIEE GRKHAKELGY PFVIKIQVPV GGRGKAGGIQ KCQNDDEFEI KYPQVMDLTI KGEKARAILL EKMADIKKEL YLSIFLNRSK RCYTIIASDE GGVEIESVKN QIIKEIGLGE VSDDLAQEVA KEMGLEGKHA EGVVDTLKKL SKLTIEKEAE LVEINPLAIM QDDSITALDG KFVTDDNSNF RHPELEKYQE KSEIEEQAEK SGFSLVELDG DIAVVGNGAG LVMSTLDMLS DNGGKPACFL DVGGGATTES VYEALTLISK LDRVKGILVN LYGGIVKTTV VAEAFLKAYE DNVIDLPVFS RLKGTESEKA TEMLQGSRTK IFSTVEEAIN AAVMGVKN // ID A9A343_NITMS Unreviewed; 154 AA. AC A9A343; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABX12171.1}; GN OrderedLocusNames=Nmar_0275 {ECO:0000313|EMBL:ABX12171.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12171.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12171.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12171.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12171.1; -; Genomic_DNA. DR ProteinModelPortal; A9A343; -. DR STRING; 436308.Nmar_0275; -. DR EnsemblBacteria; ABX12171; ABX12171; Nmar_0275. DR KEGG; nmr:Nmar_0275; -. DR eggNOG; arCOG00310; Archaea. DR eggNOG; COG1225; LUCA. DR HOGENOM; HOG000022344; -. DR OMA; CTKELCT; -. DR BioCyc; NMAR436308:GI3J-285-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016209; F:antioxidant activity; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR000866; AhpC/TSA. DR InterPro; IPR024706; Peroxiredoxin_AhpC-typ. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF00578; AhpC-TSA; 1. DR PIRSF; PIRSF000239; AHPC; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 154 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 154 AA; 17428 MW; 5BE3BAAEF5227311 CRC64; MSLNVGDTAP NFELPDTELK LRTLDEFKGK KIVLTFIVAA SSPVCETELC TLRDSWQEIA DTGAQIVAIS NDGPFANKAF AEKHNFNFPL LGDYNSKTIS DYDILMKDLL HIKDYNAAKR SVFVIMEDGK IGYKWVSEDP LKEPNYEEIK NFLK // ID A9A3C4_NITMS Unreviewed; 436 AA. AC A9A3C4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12553.1}; GN OrderedLocusNames=Nmar_0657 {ECO:0000313|EMBL:ABX12553.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12553.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12553.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12553.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12553.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0657; -. DR EnsemblBacteria; ABX12553; ABX12553; Nmar_0657. DR KEGG; nmr:Nmar_0657; -. DR eggNOG; arCOG03517; Archaea. DR eggNOG; COG1262; LUCA. DR HOGENOM; HOG000253479; -. DR OMA; PHQRWQF; -. DR BioCyc; NMAR436308:GI3J-682-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0052699; P:ergothioneine biosynthetic process; IEA:InterPro. DR Gene3D; 3.90.1580.10; -; 1. DR InterPro; IPR016187; C-type_lectin_fold. DR InterPro; IPR024775; DinB-like. DR InterPro; IPR017806; EgtB. DR InterPro; IPR005532; SUMF_dom. DR Pfam; PF12867; DinB_2; 1. DR Pfam; PF03781; FGE-sulfatase; 1. DR SUPFAM; SSF56436; SSF56436; 1. DR TIGRFAMs; TIGR03440; egtB_TIGR03440; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 16 147 DinB_2. {ECO:0000259|Pfam:PF12867}. FT DOMAIN 177 433 FGE-sulfatase. FT {ECO:0000259|Pfam:PF03781}. SQ SEQUENCE 436 AA; 51629 MW; 1759BD1D7638B366 CRC64; MTTNPELTER KPLLEQFRET RSRTLELVKT LEKDDFVVQT AFFMSPPKWH VGHVSWIYEA IMSKLDKNYE FYSKEFSEYL NSYYQQFGVP HDKGLRGVIS RPTVDQIFQY FNTINQRVEK FIETQSLDKN AVRLITMGFH HECQHQELLV YDLQHLLAEQ YRPVKKNQIQ KQNSVEQSSV QINGGLYTMG FNGKKFCYDI ELPEHKVYLN NYKIDVFPIT NKQYLEFIED GGYETYKYWL SDGWEKVKDN KWNAPMYWEK VNGKWNVRDF LGIREINPNE PVCHVSFYEA DAYCKWAGKR LPTEAEWEKA ACWNESKQEK TIFPWGNEQP TENKANLLES YHWGCTEIGT YPEGISSSGC QQMIGDIWEW TSSEFTGYPG FKTGFDEYND KWFTNQKVLR GGSFGTPKMS IRGSYRNFFR LDERWLFSGF RCAEDI // ID A9A1E1_NITMS Unreviewed; 209 AA. AC A9A1E1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12776.1}; GN OrderedLocusNames=Nmar_0880 {ECO:0000313|EMBL:ABX12776.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12776.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12776.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12776.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12776.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0880; -. DR EnsemblBacteria; ABX12776; ABX12776; Nmar_0880. DR KEGG; nmr:Nmar_0880; -. DR eggNOG; arCOG02103; Archaea. DR eggNOG; ENOG410XW8Q; LUCA. DR HOGENOM; HOG000108379; -. DR OMA; MENEGHI; -. DR BioCyc; NMAR436308:GI3J-908-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004812; F:aminoacyl-tRNA ligase activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.30.1360.30; -; 1. DR InterPro; IPR029349; DUF4443. DR InterPro; IPR004115; GAD-like. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF14544; DUF4443; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 122 194 DUF4443. {ECO:0000259|Pfam:PF14544}. SQ SEQUENCE 209 AA; 23414 MW; 50A43FEC02C511FE CRC64; MKKNIQTLQN IVSRKGSSKV LTFSIPHVFK ALQLLSNEKY VSRSTLGKEV HLGEGAVKTL ISHLKEVKMI ESTRSGNYLT EKGKKFTSQL QKIIPKECKI EKNNLTPSKN NHAIILKKYS SAIKTGVEQR DYAIMYGSSG CTTLTFKNNK FVFPGEDKDC LNKDKKTRQI LLEKLEPSDE DIIIISSSND SFVAEISAKN SALWTIATN // ID A9A2E5_NITMS Unreviewed; 176 AA. AC A9A2E5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE RecName: Full=Nicotinamide-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00243}; DE EC=2.7.7.1 {ECO:0000256|HAMAP-Rule:MF_00243}; DE AltName: Full=NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00243}; DE AltName: Full=NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00243}; DE AltName: Full=NMN adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00243}; GN OrderedLocusNames=Nmar_0960 {ECO:0000313|EMBL:ABX12856.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12856.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12856.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12856.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + nicotinamide ribonucleotide = CC diphosphate + NAD(+). {ECO:0000256|HAMAP-Rule:MF_00243}. CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from CC nicotinamide D-ribonucleotide: step 1/1. {ECO:0000256|HAMAP- CC Rule:MF_00243}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00243}. CC -!- SIMILARITY: Belongs to the archaeal NMN adenylyltransferase CC family. {ECO:0000256|HAMAP-Rule:MF_00243}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12856.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E5; -. DR STRING; 436308.Nmar_0960; -. DR EnsemblBacteria; ABX12856; ABX12856; Nmar_0960. DR KEGG; nmr:Nmar_0960; -. DR eggNOG; arCOG00972; Archaea. DR eggNOG; COG1056; LUCA. DR HOGENOM; HOG000108858; -. DR KO; K00952; -. DR OMA; VYTGNPF; -. DR BioCyc; NMAR436308:GI3J-988-MONOMER; -. DR UniPathway; UPA00253; UER00600. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0000309; F:nicotinamide-nucleotide adenylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00243; NMN_adenylyltr; 1. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR006418; NMN_Atrans_arc. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF01467; CTP_transf_like; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00243}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00243}; KW NAD {ECO:0000256|HAMAP-Rule:MF_00243}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00243}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00243, KW ECO:0000313|EMBL:ABX12856.1}; KW Pyridine nucleotide biosynthesis {ECO:0000256|HAMAP-Rule:MF_00243}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00243, KW ECO:0000313|EMBL:ABX12856.1}. FT DOMAIN 5 64 CTP_transf_like. FT {ECO:0000259|Pfam:PF01467}. SQ SEQUENCE 176 AA; 20193 MW; CAB986DEABA132E4 CRC64; MRGLMMGRFQ PFHLGHLELV KQILDQCDEV IIAITSAQFN YLEKDPFTAG ERIEMIHNSL KEANLDLKKC FVISIENQFN IATWSSYLQS ALPHFDKVYS GNDYVSMLLA DSGITVVKPE FLDRKQYNAT KIRSMIISDE NWKESVPNAV YEFLTKIDAK NRLSVISKSD TNPTKH // ID A9A2C7_NITMS Unreviewed; 92 AA. AC A9A2C7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=PpiC-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:ABX12838.1}; GN OrderedLocusNames=Nmar_0942 {ECO:0000313|EMBL:ABX12838.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12838.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12838.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12838.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000213|PDB:2M08} RP STRUCTURE BY NMR OF 2-92. RA Lederer C., Bayer P.; RT "Structure of NmPin."; RL Submitted (OCT-2012) to the PDB data bank. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12838.1; -; Genomic_DNA. DR PDB; 2M08; NMR; -; A=2-92. DR PDBsum; 2M08; -. DR ProteinModelPortal; A9A2C7; -. DR STRING; 436308.Nmar_0942; -. DR EnsemblBacteria; ABX12838; ABX12838; Nmar_0942. DR KEGG; nmr:Nmar_0942; -. DR eggNOG; arCOG07441; Archaea. DR eggNOG; COG0760; LUCA. DR HOGENOM; HOG000275330; -. DR KO; K07533; -. DR OMA; GYHLIEI; -. DR BioCyc; NMAR436308:GI3J-970-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. DR InterPro; IPR000297; PPIase_PpiC. DR PROSITE; PS50198; PPIC_PPIASE_2; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:2M08}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12838.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 92 PpiC. {ECO:0000259|PROSITE:PS50198}. SQ SEQUENCE 92 AA; 10157 MW; F8ACAD0830CD9205 CRC64; MSNKIKCSHI LVSKQSEALA IMEKLKSGEK FGKLAKELSI DSGSAKKNGN LGYFTKGMMV KPFEDAAFKL QVGEVSEPIK SEFGYHIIKR FG // ID A9A3K8_NITMS Unreviewed; 149 AA. AC A9A3K8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12940.1}; GN OrderedLocusNames=Nmar_1044 {ECO:0000313|EMBL:ABX12940.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12940.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12940.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12940.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12940.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3K8; -. DR STRING; 436308.Nmar_1044; -. DR EnsemblBacteria; ABX12940; ABX12940; Nmar_1044. DR KEGG; nmr:Nmar_1044; -. DR eggNOG; arCOG10570; Archaea. DR eggNOG; ENOG4110ZZB; LUCA. DR BioCyc; NMAR436308:GI3J-1075-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.129.10; -; 1. DR InterPro; IPR029069; HotDog_dom. DR SUPFAM; SSF54637; SSF54637; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 149 AA; 17382 MW; E4266E73B4E2A7AE CRC64; MKKFSEFRVG DAFHSTCSIS EKELEEYLNF SRVRNAFLED KQKGEQIVSG RAILSRMEGE FTRLSQIYGN HIIFLGTDGD PDWKNRNTRF LKPLYTDQVL KLKFTISQVE DMDDEFGKIG VDYEGTDNEG ETIVLSKRNI YRIKKEPPR // ID A9A1E6_NITMS Unreviewed; 85 AA. AC A9A1E6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13125.1}; GN OrderedLocusNames=Nmar_1229 {ECO:0000313|EMBL:ABX13125.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13125.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13125.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13125.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13125.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1E6; -. DR SMR; A9A1E6; 1-84. DR STRING; 436308.Nmar_1229; -. DR EnsemblBacteria; ABX13125; ABX13125; Nmar_1229. DR KEGG; nmr:Nmar_1229; -. DR eggNOG; arCOG08720; Archaea. DR eggNOG; ENOG411244G; LUCA. DR HOGENOM; HOG000107657; -. DR OMA; IHVYDTY; -. DR BioCyc; NMAR436308:GI3J-1262-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.510.10; -; 1. DR InterPro; IPR018592; DUF2024. DR InterPro; IPR023122; NE1680-like_domain. DR Pfam; PF09630; DUF2024; 1. DR SUPFAM; SSF160766; SSF160766; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 85 AA; 9638 MW; 696FED3F2A2467DE CRC64; MEIHVYDTYV KAADGHTMHF DVITGEKDHD KAISYGKEWL KSIGEENATM TQNECQFCHS QGAPEPVEQA IKENGYFIQK MEGCP // ID A9A400_NITMS Unreviewed; 246 AA. AC A9A400; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=TENA/THI-4 domain protein {ECO:0000313|EMBL:ABX12184.1}; GN OrderedLocusNames=Nmar_0288 {ECO:0000313|EMBL:ABX12184.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12184.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12184.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12184.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12184.1; -; Genomic_DNA. DR ProteinModelPortal; A9A400; -. DR STRING; 436308.Nmar_0288; -. DR EnsemblBacteria; ABX12184; ABX12184; Nmar_0288. DR KEGG; nmr:Nmar_0288; -. DR eggNOG; ENOG4102TNZ; Archaea. DR eggNOG; COG5424; LUCA. DR HOGENOM; HOG000109752; -. DR KO; K06137; -. DR OMA; YTYESQI; -. DR BioCyc; NMAR436308:GI3J-299-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.20.910.10; -; 1. DR InterPro; IPR016084; Haem_Oase-like_multi-hlx. DR InterPro; IPR004305; Thiaminase-2/PQQC. DR Pfam; PF03070; TENA_THI-4; 1. DR SUPFAM; SSF48613; SSF48613; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 246 AA; 28519 MW; 6715FC5E42607940 CRC64; MLDRSTPLEP KKILYFDHKI FCKPQRFFYW QIWSQTMNIT QKIDEMIEER SLLKHPFYQA WSDGKLTKES LAGYSKEYFQ LVKEVPSFMA PIIQQAPESV VKELVENQQE ESDHIKPWIA FAGELGISEE ELLSYSGLPK TRKAVSDLNE LMDTFEGGAC AMYAFEKEIP KISQTKLDGL AEFYGMTSDE ATEYFKLHTE ADIRHAASWR NILEKSSTDY DKLIEIAEKS ISAQNLLLDS CFEEYC // ID A9A4J4_NITMS Unreviewed; 630 AA. AC A9A4J4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Putative sensor with HAMP domain {ECO:0000313|EMBL:ABX12972.1}; GN OrderedLocusNames=Nmar_1076 {ECO:0000313|EMBL:ABX12972.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12972.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12972.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12972.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12972.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4J4; -. DR STRING; 436308.Nmar_1076; -. DR EnsemblBacteria; ABX12972; ABX12972; Nmar_1076. DR KEGG; nmr:Nmar_1076; -. DR eggNOG; arCOG02363; Archaea. DR eggNOG; arCOG06381; Archaea. DR eggNOG; ENOG410ZRK5; LUCA. DR BioCyc; NMAR436308:GI3J-1107-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR003594; HATPase_C. DR Pfam; PF00672; HAMP; 1. DR SMART; SM00304; HAMP; 1. DR PROSITE; PS50885; HAMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 315 340 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 342 394 HAMP. {ECO:0000259|PROSITE:PS50885}. SQ SEQUENCE 630 AA; 70772 MW; A131887E694C1D50 CRC64; MQIGKKILLS FTVIITSIVI MGFLIVTTTQ DNLIANIGQD YSQSLSDVVS DMTQGIDDKT YGLIEFSDKD LVYDVLFESN SQSVDLTDSQ ISETNTEWND ALDQNQILPL MDEIKGNELS EKLVFASNLV ETKFSYPIYD QIGIFNQNGI LVAYDRGIPE YYVKDAEWWS TVVSTGNFVD PVSYDNDSQV YSQNIAIRID NENGEFLGVL KTTIKLQDLI AEIHDLQQTN KFLGTNIFLH DDKGQVIYST TGSEFGENIS LVEFLLMSEE SDFYIAQSAE GSDILKVYAK PDQTSLPLGW NLVVEKNIDE VLSPVIVLTN IILIVLVTTI MSAVIVWFYI KTSISKPLIE LRDASSQIAD GNFDVYFDIK TDDEIGDLAN KFEYMRDSIN FTNSNLTDLV KLRTDELERA LSKIEKTDSW TKSIMGFISK QTNQSISDIA KNADLLKNNK LTKDEVLNSI DNTLSQLKLL TATVNDISNL EQGQLSYDMN DVKINEVITS SLKDIEKTPK KELVMNLEQS DNAYVFADSH QLERALRYII DIFMTYLDEG AIQMKTTSDE NNITIQLTSD KKMDSDIFSP LNDNDVGIAQ TDHILLYMAK VILKDHAGTT SIDDSDDKTT VSISIPVVEV // ID A9A614_NITMS Unreviewed; 161 AA. AC A9A614; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=Thioesterase superfamily protein {ECO:0000313|EMBL:ABX13492.1}; GN OrderedLocusNames=Nmar_1596 {ECO:0000313|EMBL:ABX13492.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13492.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13492.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13492.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13492.1; -; Genomic_DNA. DR ProteinModelPortal; A9A614; -. DR STRING; 436308.Nmar_1596; -. DR EnsemblBacteria; ABX13492; ABX13492; Nmar_1596. DR KEGG; nmr:Nmar_1596; -. DR eggNOG; arCOG00773; Archaea. DR eggNOG; COG1607; LUCA. DR HOGENOM; HOG000044843; -. DR OMA; NNLMGGR; -. DR BioCyc; NMAR436308:GI3J-1640-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.129.10; -; 1. DR InterPro; IPR033120; HOTDOG_ACOT. DR InterPro; IPR029069; HotDog_dom. DR InterPro; IPR006683; Thioestr_dom. DR Pfam; PF03061; 4HBT; 1. DR SUPFAM; SSF54637; SSF54637; 1. DR PROSITE; PS51770; HOTDOG_ACOT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 125 HotDog ACOT-type. FT {ECO:0000259|PROSITE:PS51770}. SQ SEQUENCE 161 AA; 17779 MW; DEC6E8562369CB25 CRC64; MSSESNIREK SPAESHAEVI VRMFPSDANP AGNVFGGEIL KHIDMVAGIV AQRHSQSNAV TVCMDSVNFL KPVFVGNVLS LNARINYVHN SSMEIEVKAE AEDIVTGIRT TTGTAFVTFV ALDKNGKPLH VPKLSLKTDE DRAKFEEGKI RMEKRLQNRQ K // ID A9A3J1_NITMS Unreviewed; 55 AA. AC A9A3J1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12923.1}; GN OrderedLocusNames=Nmar_1027 {ECO:0000313|EMBL:ABX12923.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12923.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12923.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12923.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12923.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1027; -. DR EnsemblBacteria; ABX12923; ABX12923; Nmar_1027. DR KEGG; nmr:Nmar_1027; -. DR eggNOG; arCOG08679; Archaea. DR eggNOG; ENOG411114E; LUCA. DR HOGENOM; HOG000106226; -. DR OMA; MKKAHGN; -. DR BioCyc; NMAR436308:GI3J-1058-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR InterPro; IPR007087; Znf_C2H2. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 14 37 C2H2-type. {ECO:0000259|PROSITE:PS50157}. SQ SEQUENCE 55 AA; 6135 MW; 6A0E3C3E5370797E CRC64; MGLFNRNKDN DSKTKCDTCG TELHDPERLK RHMKKAHGNV PAKKLDPNAG DGGTW // ID A9A3T1_NITMS Unreviewed; 432 AA. AC A9A3T1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I {ECO:0000313|EMBL:ABX13343.1}; GN OrderedLocusNames=Nmar_1447 {ECO:0000313|EMBL:ABX13343.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13343.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13343.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13343.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13343.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3T1; -. DR STRING; 436308.Nmar_1447; -. DR EnsemblBacteria; ABX13343; ABX13343; Nmar_1447. DR KEGG; nmr:Nmar_1447; -. DR eggNOG; arCOG00767; Archaea. DR eggNOG; COG1109; LUCA. DR HOGENOM; HOG000268680; -. DR OMA; MARENAS; -. DR BioCyc; NMAR436308:GI3J-1484-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016868; F:intramolecular transferase activity, phosphotransferases; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.30.310.50; -; 1. DR Gene3D; 3.40.120.10; -; 3. DR InterPro; IPR005844; A-D-PHexomutase_a/b/a-I. DR InterPro; IPR016055; A-D-PHexomutase_a/b/a-I/II/III. DR InterPro; IPR005845; A-D-PHexomutase_a/b/a-II. DR InterPro; IPR005846; A-D-PHexomutase_a/b/a-III. DR InterPro; IPR005843; A-D-PHexomutase_C. DR InterPro; IPR005841; Alpha-D-phosphohexomutase_SF. DR Pfam; PF02878; PGM_PMM_I; 1. DR Pfam; PF02879; PGM_PMM_II; 1. DR Pfam; PF02880; PGM_PMM_III; 1. DR Pfam; PF00408; PGM_PMM_IV; 1. DR PRINTS; PR00509; PGMPMM. DR SUPFAM; SSF53738; SSF53738; 3. DR SUPFAM; SSF55957; SSF55957; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 120 PGM_PMM_I. {ECO:0000259|Pfam:PF02878}. FT DOMAIN 138 229 PGM_PMM_II. {ECO:0000259|Pfam:PF02879}. FT DOMAIN 251 339 PGM_PMM_III. {ECO:0000259|Pfam:PF02880}. FT DOMAIN 365 423 PGM_PMM_IV. {ECO:0000259|Pfam:PF00408}. SQ SEQUENCE 432 AA; 47082 MW; 3E10B6BBCC681E7D CRC64; MKKTISGIRG IFGEDLYLKD VLEFCNNFSS LVQSGKCAIG KDTRPTGSMM KDAASAALMQ NGIDVFNLET VPTPVVFREA RKYGAGIVVS SSHNPIQWNG LKFIIEGRGI NEKELPKIIE KQEIPKTKIG AEQDISSSYI EDARKIIGSL ENNPEVVVDI GGGAAKGFAP ELLESIGCKV HTINENLEGS TRGPDPTADS LSDLVSASSG KDVGFAFDLD GDRLVVVRNG KKQTPDVTLG LGVAKSLDLG YKKFVLSIDT SVSVEKFIKE NGGTVQRTKV GEANVIEQMI KDNAQAGGEG SSGGFILPEF NYCREGILTS GLISSMLGTA KYNEILDFME SYFQIRDKTA IDAQLHDKVI EKVQTTFEKN YSETITLDGV KGIIDENSWV LVRKSNTEDI IRVSAESNDE NKCKQIVKDT IELVNQSYEQ VR // ID A9A543_NITMS Unreviewed; 218 AA. AC A9A543; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE RecName: Full=Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; DE EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942}; DE AltName: Full=DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; GN Name=nth {ECO:0000256|HAMAP-Rule:MF_00942}; GN OrderedLocusNames=Nmar_0052 {ECO:0000313|EMBL:ABX11952.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11952.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11952.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11952.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: DNA repair enzyme that has both DNA N-glycosylase CC activity and AP-lyase activity. The DNA N-glycosylase activity CC releases various damaged pyrimidines from DNA by cleaving the N- CC glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The CC AP-lyase activity cleaves the phosphodiester bond 3' to the AP CC site by a beta-elimination, leaving a 3'-terminal unsaturated CC sugar and a product with a terminal 5'-phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00942}. CC -!- CATALYTIC ACTIVITY: The C-O-P bond 3' to the apurinic or CC apyrimidinic site in DNA is broken by a beta-elimination reaction, CC leaving a 3'-terminal unsaturated sugar and a product with a CC terminal 5'-phosphate. {ECO:0000256|HAMAP-Rule:MF_00942}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00942}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000256|HAMAP-Rule:MF_00942}; CC -!- SIMILARITY: Belongs to the Nth/MutY family. {ECO:0000256|HAMAP- CC Rule:MF_00942}. CC -!- SIMILARITY: Contains 1 HhH domain. {ECO:0000256|HAMAP- CC Rule:MF_00942}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11952.1; -; Genomic_DNA. DR ProteinModelPortal; A9A543; -. DR STRING; 436308.Nmar_0052; -. DR EnsemblBacteria; ABX11952; ABX11952; Nmar_0052. DR KEGG; nmr:Nmar_0052; -. DR eggNOG; arCOG00459; Archaea. DR eggNOG; COG0177; LUCA. DR HOGENOM; HOG000252209; -. DR KO; K10773; -. DR OMA; IWYGREY; -. DR BioCyc; NMAR436308:GI3J-52-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019104; F:DNA N-glycosylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0006284; P:base-excision repair; IEA:InterPro. DR Gene3D; 1.10.1670.10; -; 1. DR Gene3D; 1.10.340.30; -; 1. DR HAMAP; MF_00942; Nth; 1. DR InterPro; IPR011257; DNA_glycosylase. DR InterPro; IPR004036; Endonuclease-III-like_CS2. DR InterPro; IPR003265; HhH-GPD_domain. DR InterPro; IPR000445; HhH_motif. DR InterPro; IPR023170; HTH_base_excis_C. DR InterPro; IPR005759; Nth. DR Pfam; PF00633; HHH; 1. DR Pfam; PF00730; HhH-GPD; 1. DR PIRSF; PIRSF001435; Nth; 1. DR SMART; SM00478; ENDO3c; 1. DR SUPFAM; SSF48150; SSF48150; 1. DR PROSITE; PS01155; ENDONUCLEASE_III_2; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00942}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA damage {ECO:0000256|HAMAP-Rule:MF_00942}; KW DNA repair {ECO:0000256|HAMAP-Rule:MF_00942}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00942}; KW Glycosidase {ECO:0000256|HAMAP-Rule:MF_00942}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00942}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00942}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00942}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000313|EMBL:ABX11952.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00942}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 44 191 ENDO3c. {ECO:0000259|SMART:SM00478}. FT DOMAIN 105 134 HhH. {ECO:0000256|HAMAP-Rule:MF_00942}. FT METAL 193 193 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. FT METAL 200 200 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. FT METAL 203 203 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. FT METAL 209 209 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00942}. SQ SEQUENCE 218 AA; 24808 MW; FCC5AAD3F7173617 CRC64; MKMEKILSKM MDTMNSVKTP RITALRDLHD AETGPFSILI GTILSARTKD ESTTKVVKVL FSKYKNPKQL ANAKLKDVEK IIKSIGFYHV KSKRIIEVAK IIDSKYKGKV PEDLDTLVQL PGVGRKTANC VLVYAFEKPA IPVDIHVHRI SNRLGLVETK NPEETEQELM KKVDKKFWID INDTFVMYGQ NICKPISPMC DVCKIKRSCK FYKSKNAS // ID A9A3L2_NITMS Unreviewed; 257 AA. AC A9A3L2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12944.1}; GN OrderedLocusNames=Nmar_1048 {ECO:0000313|EMBL:ABX12944.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12944.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12944.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12944.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363041}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363041}. CC -!- SIMILARITY: Belongs to the UPF0721 family. CC {ECO:0000256|RuleBase:RU363041}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12944.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1048; -. DR EnsemblBacteria; ABX12944; ABX12944; Nmar_1048. DR KEGG; nmr:Nmar_1048; -. DR eggNOG; arCOG02050; Archaea. DR eggNOG; COG0730; LUCA. DR HOGENOM; HOG000108169; -. DR KO; K07090; -. DR OMA; LPFRHAV; -. DR BioCyc; NMAR436308:GI3J-1079-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW. DR InterPro; IPR002781; TM_pro_TauE-like. DR PANTHER; PTHR30269; PTHR30269; 1. DR Pfam; PF01925; TauE; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|RuleBase:RU363041}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU363041}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363041}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 12 36 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 42 60 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 72 92 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 98 116 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 200 221 Helical. {ECO:0000256|RuleBase:RU363041}. FT TRANSMEM 228 245 Helical. {ECO:0000256|RuleBase:RU363041}. SQ SEQUENCE 257 AA; 26672 MW; 6612DE15F966658A CRC64; MIDQLWLIPL GFAAGVLGSM IGLGGGVIVV PVLTFLGFPP TAAASNSLFA ALSNAVASTM SYSKQKRIEY SLGLKLGLLS VPGTILGAIV SSDVGSDIFK ALFGFVLIAS AAYIFLRKKI ESKEKKISLQ MMIFAIGASF FAGIISSFFG IGGGIVFVPL MVVGMGMTMK KAAPTSQMIL LFASSSGVIV HSLLGHPDFL QSGLLAIGSF IGGLVGARLS IDIKERSLQI LVSVVILIAA GKLFFDSLTG NSVLLGF // ID A9A214_NITMS Unreviewed; 442 AA. AC A9A214; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE RecName: Full=Signal recognition particle 54 kDa protein {ECO:0000256|HAMAP-Rule:MF_00306}; DE Short=SRP54 {ECO:0000256|HAMAP-Rule:MF_00306}; GN Name=srp54 {ECO:0000256|HAMAP-Rule:MF_00306}; GN OrderedLocusNames=Nmar_0531 {ECO:0000313|EMBL:ABX12427.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12427.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12427.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12427.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in targeting and insertion of nascent membrane CC proteins into the cytoplasmic membrane. Binds to the hydrophobic CC signal sequence of the ribosome-nascent chain (RNC) as it emerges CC from the ribosomes. The SRP-RNC complex is then targeted to the CC cytoplasmic membrane where it interacts with the SRP receptor CC FtsY. {ECO:0000256|HAMAP-Rule:MF_00306}. CC -!- SUBUNIT: Part of the signal recognition particle protein CC translocation system, which is composed of SRP and FtsY. Archaeal CC SRP consists of a 7S RNA molecule of 300 nucleotides and two CC protein subunits: SRP54 and SRP19. {ECO:0000256|HAMAP- CC Rule:MF_00306}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00306}. CC Note=The SRP-RNC complex is targeted to the cytoplasmic membrane. CC {ECO:0000256|HAMAP-Rule:MF_00306}. CC -!- DOMAIN: Composed of three domains: the N-terminal N domain, which CC is responsible for interactions with the ribosome, the central G CC domain, which binds GTP, and the C-terminal M domain, which binds CC the RNA and the signal sequence of the RNC. {ECO:0000256|HAMAP- CC Rule:MF_00306}. CC -!- SIMILARITY: Belongs to the GTP-binding SRP family. SRP54 CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00306}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12427.1; -; Genomic_DNA. DR ProteinModelPortal; A9A214; -. DR STRING; 436308.Nmar_0531; -. DR EnsemblBacteria; ABX12427; ABX12427; Nmar_0531. DR KEGG; nmr:Nmar_0531; -. DR eggNOG; arCOG01228; Archaea. DR eggNOG; COG0541; LUCA. DR HOGENOM; HOG000036165; -. DR KO; K03106; -. DR OMA; VICADTF; -. DR BioCyc; NMAR436308:GI3J-553-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW. DR GO; GO:0008312; F:7S RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro. DR Gene3D; 1.10.260.30; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00306; SRP54; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR013822; Signal_recog_particl_SRP54_hlx. DR InterPro; IPR004125; Signal_recog_particle_SRP54_M. DR InterPro; IPR022941; SRP54. DR InterPro; IPR000897; SRP54_GTPase_dom. DR Pfam; PF00448; SRP54; 1. DR Pfam; PF02881; SRP54_N; 1. DR Pfam; PF02978; SRP_SPB; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00962; SRP54; 1. DR SMART; SM00963; SRP54_N; 1. DR SUPFAM; SSF47364; SSF47364; 1. DR SUPFAM; SSF47446; SSF47446; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00306}; KW GTP-binding {ECO:0000256|HAMAP-Rule:MF_00306}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00306}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00306}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00306}; KW Signal recognition particle {ECO:0000256|HAMAP-Rule:MF_00306}. FT DOMAIN 1 86 SRP54_N. {ECO:0000259|SMART:SM00963}. FT DOMAIN 98 275 AAA. {ECO:0000259|SMART:SM00382}. FT DOMAIN 99 294 SRP54. {ECO:0000259|SMART:SM00962}. FT NP_BIND 106 113 GTP. {ECO:0000256|HAMAP-Rule:MF_00306}. FT NP_BIND 188 192 GTP. {ECO:0000256|HAMAP-Rule:MF_00306}. FT NP_BIND 246 249 GTP. {ECO:0000256|HAMAP-Rule:MF_00306}. SQ SEQUENCE 442 AA; 48640 MW; 2D45ACC93C2C80FF CRC64; MLDGLKSSLG DAIKKIVKSS GIDEELIKEL SKDVQRALLQ SDVNVRLVLE ITKHLEERAL NETPPPGLSR KNHIVKILYD ELSNLLGNES EFDFKPGKQN KIILLGIQGS GKTTVASKLA KFLTGQGYKV GVVGADTYRP GALVQLKTMC EKSNVEVYGE ESNKDSPSIV KNGLNYFKDQ SLDVILIDTA GRHKEEQDLL EEMDRINKVA DPDLALLVID GTIGQQCFNQ AEAFHKTIPV GGVIITKLDS SAKGGGALAA SAATGAQIMY IGTGERIDDL EKFSPTRFVG RLLGMGDVQA VLDLAKRLES ENDDDRMKRI SSGKMNMEDF LSQLEEVTKM GSLQGILESM PGLSGMVKDD QVNQMEDRVT KWRYIIQSMT TQEKADPEGL LNSSRIKRIA RGSGWPEGEV KELMKNYKNS KNMMKASKGR QMQGTLRRMG LG // ID A9A1N6_NITMS Unreviewed; 306 AA. AC A9A1N6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Periplasmic solute binding protein {ECO:0000313|EMBL:ABX13551.1}; GN OrderedLocusNames=Nmar_1655 {ECO:0000313|EMBL:ABX13551.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13551.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13551.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13551.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13551.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1N6; -. DR STRING; 436308.Nmar_1655; -. DR EnsemblBacteria; ABX13551; ABX13551; Nmar_1655. DR KEGG; nmr:Nmar_1655; -. DR eggNOG; arCOG01005; Archaea. DR eggNOG; COG0803; LUCA. DR HOGENOM; HOG000180308; -. DR KO; K09815; -. DR OMA; IVNIYGM; -. DR BioCyc; NMAR436308:GI3J-1700-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR GO; GO:0030001; P:metal ion transport; IEA:InterPro. DR InterPro; IPR006129; AdhesinB. DR InterPro; IPR006128; Lipoprotein_4. DR InterPro; IPR006127; ZnuA-like. DR Pfam; PF01297; ZnuA; 1. DR PRINTS; PR00691; ADHESINB. DR PRINTS; PR00690; ADHESNFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 306 AA; 34529 MW; F5ADEF58C325095D CRC64; MNTQTKLAII AIAVVIPLSS FAVYGISPNT DSIYSEKSKL QVISSFDPLH EFVQNIGQDK VDAILLVPVG VEPHDWEPTI KDVQKMQISD MIIINGIGFE DWVDKLDENN YQGNIVDTSN GILVKEYEED EHMDEPNRET GDPHIWLNPV FAKIQVQNIA DEFSKHDPEN QQYYQSNAES YIQELTLLDL QIRNDLSNCN SDFIAFHDAF SYFADEYDLH QHTILSSTDP HGEATAKTLE NVISTAKEHN IKIIFSEETV DTRTSETIAH EIGGQVLVLS PLEIASEGTY ISKMKQNLEN LQEALC // ID A9A3I3_NITMS Unreviewed; 273 AA. AC A9A3I3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABX12915.1}; GN OrderedLocusNames=Nmar_1019 {ECO:0000313|EMBL:ABX12915.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12915.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12915.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12915.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12915.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3I3; -. DR STRING; 436308.Nmar_1019; -. DR EnsemblBacteria; ABX12915; ABX12915; Nmar_1019. DR KEGG; nmr:Nmar_1019; -. DR eggNOG; arCOG03038; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000023864; -. DR OMA; CYLSPFH; -. DR BioCyc; NMAR436308:GI3J-1050-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR001440; TPR_1. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF00515; TPR_1; 1. DR Pfam; PF13174; TPR_6; 1. DR SMART; SM00028; TPR; 7. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 7. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 247 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 273 AA; 31017 MW; 2DEBD105E6A93B7B CRC64; MGLFGKKEDP EDLMYEGVGM MEKNQPKAAI SFFNKVLKQE PENTEALLQK GLALNLIKKY QDAITCFDKL IEIDPKDAQA LNNRGISMAE TGNIQGAAEY YDRAIEADSK YASAYFNKGV LLDKLQEHEE ALTVLEKAIT IDPRKPNAMI YKGIVLGKLK RNEEALNCFS NVCKKYPNNL DAFFQKGVQL AELDQHKKAL DVFDELLKKY KDNVNVIYAK SRSMAALEKY PESLELLKQA VSKSPKVIRA WAKEEPIFTK LHSNDEFRKI VKL // ID A9A641_NITMS Unreviewed; 93 AA. AC A9A641; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=DNA-binding TFAR19-related protein {ECO:0000313|EMBL:ABX13519.1}; GN OrderedLocusNames=Nmar_1623 {ECO:0000313|EMBL:ABX13519.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13519.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13519.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13519.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the PDCD5 family. CC {ECO:0000256|SAAS:SAAS00576770}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13519.1; -; Genomic_DNA. DR ProteinModelPortal; A9A641; -. DR STRING; 436308.Nmar_1623; -. DR EnsemblBacteria; ABX13519; ABX13519; Nmar_1623. DR KEGG; nmr:Nmar_1623; -. DR eggNOG; arCOG04179; Archaea. DR eggNOG; COG2118; LUCA. DR HOGENOM; HOG000194121; -. DR KO; K06875; -. DR OMA; GRINRPL; -. DR BioCyc; NMAR436308:GI3J-1667-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR Gene3D; 1.10.8.140; -; 1. DR InterPro; IPR002836; PDCD5-related. DR PANTHER; PTHR10840; PTHR10840; 1. DR Pfam; PF01984; dsDNA_bind; 1. DR PIRSF; PIRSF015730; TFAR19; 1. DR SUPFAM; SSF46950; SSF46950; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000313|EMBL:ABX13519.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 93 AA; 10731 MW; BC8FC649A5E9649E CRC64; MSFPESNDQP QDNTNHELAA QKEQILKQIL VPEARMRLNN IKMVKPELAD LVEQYLIGMA TQGKIPGQIT DDQLKQILLS TQQPKREFKF NRV // ID A9A2X0_NITMS Unreviewed; 348 AA. AC A9A2X0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 55. DE RecName: Full=Tyrosine--tRNA ligase {ECO:0000256|SAAS:SAAS00011232}; DE EC=6.1.1.1 {ECO:0000256|SAAS:SAAS00011232}; GN OrderedLocusNames=Nmar_1751 {ECO:0000313|EMBL:ABX13647.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13647.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13647.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13647.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-tyrosine + tRNA(Tyr) = AMP + CC diphosphate + L-tyrosyl-tRNA(Tyr). CC {ECO:0000256|SAAS:SAAS00011233}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|RuleBase:RU363036, CC ECO:0000256|SAAS:SAAS00539232}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13647.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2X0; -. DR STRING; 436308.Nmar_1751; -. DR EnsemblBacteria; ABX13647; ABX13647; Nmar_1751. DR KEGG; nmr:Nmar_1751; -. DR eggNOG; arCOG01886; Archaea. DR eggNOG; COG0162; LUCA. DR HOGENOM; HOG000228238; -. DR KO; K01866; -. DR OMA; HVIAIEV; -. DR BioCyc; NMAR436308:GI3J-1798-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004831; F:tyrosine-tRNA ligase activity; IEA:UniProtKB-EC. DR GO; GO:0006437; P:tyrosyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR002305; aa-tRNA-synth_Ic. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR002307; Tyr-tRNA-ligase. DR InterPro; IPR023617; Tyr-tRNA-ligase_arc/euk-type. DR Pfam; PF00579; tRNA-synt_1b; 1. DR PIRSF; PIRSF006588; TyrRS_arch_euk; 1. DR TIGRFAMs; TIGR00234; tyrS; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|RuleBase:RU363036, KW ECO:0000256|SAAS:SAAS00421485, ECO:0000313|EMBL:ABX13647.1}; KW ATP-binding {ECO:0000256|RuleBase:RU363036, KW ECO:0000256|SAAS:SAAS00421484}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|RuleBase:RU363036, ECO:0000256|SAAS:SAAS00421485, KW ECO:0000313|EMBL:ABX13647.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363036, KW ECO:0000256|SAAS:SAAS00421484}; KW Protein biosynthesis {ECO:0000256|RuleBase:RU363036, KW ECO:0000256|SAAS:SAAS00421487}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 348 AA; 39797 MW; AD932E060317244D CRC64; MDITEKVDLI ERPPTEEVVT RDELTELFKT NSSPKHYIGL EISGFLHLGS LISTGFKIND FAKAGVKCTI FLADWHTLIN DKLGGNWETI SKVSKYYQDA FKLVCPDAEI ILGSKLYEEK TEYWSELVKF TKHMSLARTM RTLTIMGRSE NEEKIDVAKL LYPAMQAVDI HSLEVDIAHA GMDQRKIHML VREIFPKMKW KVPVAVHHKL LPGLSKPADT SDSQVLGKMS KSDPNSGVFI HNTDEEIKKK MNKAWCEEAN IQNNPLLEIA KTVIFHEFNE MNVERSEKFG GNVSYQDYNQ LEIDFAEKKL HPGDLKQTVG NYLVKIISPI RDKLDLTEEL HEAIKKSY // ID A9A5Y3_NITMS Unreviewed; 361 AA. AC A9A5Y3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABX13461.1}; GN OrderedLocusNames=Nmar_1565 {ECO:0000313|EMBL:ABX13461.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13461.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13461.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13461.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13461.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y3; -. DR STRING; 436308.Nmar_1565; -. DR EnsemblBacteria; ABX13461; ABX13461; Nmar_1565. DR KEGG; nmr:Nmar_1565; -. DR eggNOG; arCOG01458; Archaea. DR eggNOG; COG0604; LUCA. DR HOGENOM; HOG000294672; -. DR OMA; YMGTKGE; -. DR BioCyc; NMAR436308:GI3J-1609-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.180.10; -; 1. DR InterPro; IPR013149; ADH_C. DR InterPro; IPR013154; ADH_N. DR InterPro; IPR002085; ADH_SF_Zn-type. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020843; PKS_ER. DR PANTHER; PTHR11695; PTHR11695; 1. DR Pfam; PF08240; ADH_N; 1. DR Pfam; PF00107; ADH_zinc_N; 1. DR SMART; SM00829; PKS_ER; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 361 AA; 39792 MW; 46B26AB6CFBD24F9 CRC64; MKKIMKALVY EEYTTDDDFS KILKIKDLPI PEPKSNEVVF KVKAAALNYD DIWGMRGKPL AIPLPHISGT DAAGEVTAVG EDVKNFKVGD RVVSHGNMSC RVCKRCTSGR EYDCKKRTIW GFETGPLWGG YCEYTHLPEV NVVKIPEGIS YEEAAAASMT MLTSWHMLVG RAKIQPGQLV LIMGGGSGVG NYGIQIAKLF GCTVIATASP DKLDQLLELG ADYAIDHRKE DWHKEVRAIA KKLPKPFGEV PGVDVIFEHI GGSHWNKELT LLNYGGTVIT TGATTGYMAK TDLRHIFFKG LNILGSTQGT RAELEEGFYW MSKGKIKSII DSEYTLEQAA EAHTKMLKGK GLFGKIIMKP N // ID A9A204_NITMS Unreviewed; 192 AA. AC A9A204; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Chromosome segregation and condensation protein ScpB {ECO:0000313|EMBL:ABX12417.1}; GN OrderedLocusNames=Nmar_0521 {ECO:0000313|EMBL:ABX12417.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12417.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12417.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12417.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12417.1; -; Genomic_DNA. DR ProteinModelPortal; A9A204; -. DR STRING; 436308.Nmar_0521; -. DR EnsemblBacteria; ABX12417; ABX12417; Nmar_0521. DR KEGG; nmr:Nmar_0521; -. DR eggNOG; arCOG02613; Archaea. DR eggNOG; COG1386; LUCA. DR HOGENOM; HOG000108948; -. DR KO; K06024; -. DR OMA; YGFPEND; -. DR BioCyc; NMAR436308:GI3J-542-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051304; P:chromosome separation; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 2. DR InterPro; IPR005234; ScpB_csome_segregation. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF04079; SMC_ScpB; 1. DR SUPFAM; SSF46785; SSF46785; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 192 AA; 21596 MW; DF6894C78615A081 CRC64; MAKIENIDEA TARVEAALYS AGRPLRIEDI VRASGTESRT KTLDILQNIM KKTKSAFKAL EVVILPDGSY VMQLKPEYSA TVKKYASKPV LPNATLKTLS YIAYQQPISS KQLVEVRGSG VYAHLKELRQ LDYITHQNVG RIKIYTTTEK FQKYFGIQGD VEDLKQRLFS KVRKTASARQ TTPAPQIVTE VN // ID A9A4S7_NITMS Unreviewed; 79 AA. AC A9A4S7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13381.1}; GN OrderedLocusNames=Nmar_1485 {ECO:0000313|EMBL:ABX13381.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13381.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13381.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13381.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13381.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4S7; -. DR STRING; 436308.Nmar_1485; -. DR EnsemblBacteria; ABX13381; ABX13381; Nmar_1485. DR KEGG; nmr:Nmar_1485; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000225449; -. DR OMA; EAMIVYG; -. DR BioCyc; NMAR436308:GI3J-1523-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 73 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 79 AA; 8797 MW; FF93DCBD8A11C15F CRC64; MATAYVLINC ELGSEEAIIT QLKGLEGVKE VHGTFGAYDI LAKIESDTVE KLRETITWKI RKIEKIRSTL TLMGIEGQT // ID A9A1M3_NITMS Unreviewed; 290 AA. AC A9A1M3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13538.1}; GN OrderedLocusNames=Nmar_1642 {ECO:0000313|EMBL:ABX13538.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13538.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13538.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13538.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13538.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1642; -. DR EnsemblBacteria; ABX13538; ABX13538; Nmar_1642. DR KEGG; nmr:Nmar_1642; -. DR eggNOG; arCOG02745; Archaea. DR eggNOG; COG1721; LUCA. DR HOGENOM; HOG000277380; -. DR OMA; FGTGRWL; -. DR BioCyc; NMAR436308:GI3J-1687-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002881; DUF58. DR InterPro; IPR002035; VWF_A. DR Pfam; PF01882; DUF58; 1. DR SUPFAM; SSF53300; SSF53300; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 38 122 DUF58. {ECO:0000259|Pfam:PF01882}. SQ SEQUENCE 290 AA; 33753 MW; 8182F220286DE74E CRC64; MTELTELLKQ VKNLDIKTKN LVEGMESGAY RSRFRGGGIE FSEVREYAAG DDARRVDWNV SARYNDLFVK EFVEEKELNV YVVMDMSASN DFGFVKSKKE LGFEITASLM FSALKNNDRV GLGLFTDSLE KFVPAKKGKK HMMEILKKLL EYTPQSTQTD IFRSLSELQK NLKRRSVVFV VSDFMSDSFV KPLQYLKLKH QIVLVNISDI RETEIPEIGH VYLEDAESGE QILVNTSDKK FQEEYSNLIK KTREEIEYEM KKLGVDFLNL SNEEPFDVTF NRYIHTRRRK // ID A9A2X3_NITMS Unreviewed; 467 AA. AC A9A2X3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 62. DE RecName: Full=Aspartokinase {ECO:0000256|RuleBase:RU003448}; DE EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448}; GN OrderedLocusNames=Nmar_1754 {ECO:0000313|EMBL:ABX13650.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13650.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13650.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13650.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-aspartate = ADP + 4-phospho-L- CC aspartate. {ECO:0000256|RuleBase:RU003448}. CC -!- SIMILARITY: Belongs to the aspartokinase family. CC {ECO:0000256|RuleBase:RU003448}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13650.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2X3; -. DR STRING; 436308.Nmar_1754; -. DR EnsemblBacteria; ABX13650; ABX13650; Nmar_1754. DR KEGG; nmr:Nmar_1754; -. DR eggNOG; arCOG00861; Archaea. DR eggNOG; COG0527; LUCA. DR HOGENOM; HOG000293094; -. DR KO; K00928; -. DR OMA; GANIKMI; -. DR BioCyc; NMAR436308:GI3J-1801-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004072; F:aspartate kinase activity; IEA:UniProtKB-EC. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:InterPro. DR Gene3D; 3.40.1160.10; -; 2. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR001048; Asp/Glu/Uridylate_kinase. DR InterPro; IPR005260; Asp_kin_monofn. DR InterPro; IPR001341; Asp_kinase_dom. DR InterPro; IPR018042; Aspartate_kinase_CS. DR InterPro; IPR027795; GATS-like_ACT_dom. DR Pfam; PF00696; AA_kinase; 1. DR Pfam; PF13840; ACT_7; 1. DR PIRSF; PIRSF000726; Asp_kin; 1. DR SUPFAM; SSF53633; SSF53633; 1. DR TIGRFAMs; TIGR00657; asp_kinases; 1. DR PROSITE; PS51671; ACT; 1. DR PROSITE; PS00324; ASPARTOKINASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000256|RuleBase:RU003448, ECO:0000313|EMBL:ABX13650.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU003448, KW ECO:0000313|EMBL:ABX13650.1}. FT DOMAIN 326 406 ACT. {ECO:0000259|PROSITE:PS51671}. SQ SEQUENCE 467 AA; 50068 MW; C00939CF252B9DE4 CRC64; MRLVIKYGGT SISSAKDIRA VANHLNSLSK KNQIVVVCSA TSGTTDDLIE ISQSIKKENK SKAEQLASKI TNRHKQLAKQ TIKKADLRKK LLKNFDDDFA ELVALIDGMV LLGEVTPRTM DYLFSFGERL SIKLVSMAVN DSGKKSVPLT GKEVGIVTDS NFGESKPLID TTRLRVSKNV ENLFSKKTVP VVGGFVGADQ HGHVTTFGRG GSDYSATIIG TCIKADEIWL MSDVDGLMTA DPKIVKNAKL LKEVSYIEAI EMALFGAKQI HPRTFEPLLS KKIPMKIRSS FNLKNEGTLV TASPSPSVKN TVKCVSNVRN NGLIDIQGGS MVGTPGTAAK IFATLAKAGI NVMMISQNPS ESSITIVVKN ADLDKAVSSL EMELLGKIIK KLEVTTNVAI IALIGSGMRG TVGVASKVFG AAEKNKVNVS MITQGSSELN LAFVVKNSDT NAAVRALHNA FALDKIN // ID A9A206_NITMS Unreviewed; 350 AA. AC A9A206; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 61. DE SubName: Full=Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ABX12419.1}; GN OrderedLocusNames=Nmar_0523 {ECO:0000313|EMBL:ABX12419.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12419.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12419.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12419.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|RuleBase:RU361277}; CC -!- SIMILARITY: Belongs to the zinc-containing alcohol dehydrogenase CC family. {ECO:0000256|RuleBase:RU361277}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12419.1; -; Genomic_DNA. DR ProteinModelPortal; A9A206; -. DR STRING; 436308.Nmar_0523; -. DR EnsemblBacteria; ABX12419; ABX12419; Nmar_0523. DR KEGG; nmr:Nmar_0523; -. DR eggNOG; arCOG01455; Archaea. DR eggNOG; COG1064; LUCA. DR HOGENOM; HOG000294685; -. DR KO; K13953; -. DR OMA; NINQVFA; -. DR BioCyc; NMAR436308:GI3J-544-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.180.10; -; 1. DR InterPro; IPR013149; ADH_C. DR InterPro; IPR013154; ADH_N. DR InterPro; IPR002085; ADH_SF_Zn-type. DR InterPro; IPR002328; ADH_Zn_CS. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020843; PKS_ER. DR PANTHER; PTHR11695; PTHR11695; 1. DR Pfam; PF08240; ADH_N; 1. DR Pfam; PF00107; ADH_zinc_N; 1. DR SMART; SM00829; PKS_ER; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00059; ADH_ZINC; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|RuleBase:RU361277}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|RuleBase:RU361277}. SQ SEQUENCE 350 AA; 37023 MW; 1276E89341A5424F CRC64; MKSAKIPGPN EPLTISETEN PKPSGTQVLL KVKSEGVCHS DLHLWEGGYD LGDGQFLKVT DRGVKYPVTP GHEIVGTIEE IGENVSNVTV GDDVLVFPWM GCGECPACKV GNENLCDAPK SMGLFQNGGY ADYVLVPNSK YLAKLDGVDP DAATSLACSG LTAYTAIKKA NQNSPEFIVI VGAGGLGLMG VQIASEITNA KIICVDLDDA KLATAKEMGA HFTVNSKDSE TVQKIMSICN DKGADSVVDF VNAPPTVKTG LAVLRKRGNL VLVGLFGGSL ELSLVTIPLK SITIQGAYTG NYNDMVELLG LARKGTINPV ISKRYSLDEA NSALQDLKDR KILGRAVINP // ID A9A3E1_NITMS Unreviewed; 459 AA. AC A9A3E1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABX12873.1}; GN OrderedLocusNames=Nmar_0977 {ECO:0000313|EMBL:ABX12873.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12873.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12873.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12873.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12873.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3E1; -. DR STRING; 436308.Nmar_0977; -. DR EnsemblBacteria; ABX12873; ABX12873; Nmar_0977. DR KEGG; nmr:Nmar_0977; -. DR eggNOG; arCOG03015; Archaea. DR eggNOG; COG0702; LUCA. DR HOGENOM; HOG000241597; -. DR OMA; TSENFAE; -. DR BioCyc; NMAR436308:GI3J-1005-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0050662; F:coenzyme binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF13460; NAD_binding_10; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 333 350 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 362 379 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 386 404 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 424 446 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 459 AA; 51548 MW; B1B5F0D095F3DA59 CRC64; MKQVISSSKS SDYKPFSILV TGATGFIGSR LISSLVSSGY TVKGLSRKQL SGNDKVKYVK ADAFNFDELK NAMFGIDTAY YLLHSMEGDK GDWQEFATRE NNQAQNFLKA ATESGVKRII YLGGLVNDSL GLSPHMRSRK EVGEILASGN IPVTEFRASI IIGAKSGSYA MLRYLVERLS VMVCPSWVKS LAQPIAVDDV ISYLAESLSK PETMGKIFEI GGPDKMTYEE LMRVYSAYLN KNLFVIQIPF LTTRLSSYWV DLITPVKASL ARPLIDSLVH DTVVADDSIT KIIPMHLKSV REAIDIATKE MKSDPPQMEQ KEEKTGFKIN QKLIQVSLFA LAIIGSSYYW LDDRTDVYEP MWLIGSAFWY IAIGFAIILI HNKTRLGYLI AGVLSWITLV FWLFDNYYVI FENSLIATTP NELMTIRNFI GIFIVALTVI ASHNLFHKVI DYQYKGKPL // ID A9A2B7_NITMS Unreviewed; 182 AA. AC A9A2B7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE SubName: Full=RNA polymerase Rpb6 {ECO:0000313|EMBL:ABX12828.1}; GN OrderedLocusNames=Nmar_0932 {ECO:0000313|EMBL:ABX12828.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12828.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12828.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12828.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12828.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2B7; -. DR STRING; 436308.Nmar_0932; -. DR EnsemblBacteria; ABX12828; ABX12828; Nmar_0932. DR KEGG; nmr:Nmar_0932; -. DR eggNOG; arCOG01268; Archaea. DR eggNOG; COG1758; LUCA. DR HOGENOM; HOG000105804; -. DR KO; K03014; -. DR OMA; NGDYQNI; -. DR BioCyc; NMAR436308:GI3J-960-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR Gene3D; 3.90.940.10; -; 1. DR HAMAP; MF_00192; RNApol_arch_K; 1. DR InterPro; IPR020708; DNA-dir_RNA_polK_14-18kDa_CS. DR InterPro; IPR006110; Pol_omega/K/RPB6. DR InterPro; IPR012293; RNAP_RPB6_omega. DR InterPro; IPR006111; RpoK/Rpb6. DR PANTHER; PTHR10773; PTHR10773; 1. DR Pfam; PF01192; RNA_pol_Rpb6; 1. DR SMART; SM01409; RNA_pol_Rpb6; 1. DR SUPFAM; SSF63562; SSF63562; 1. DR PROSITE; PS01111; RNA_POL_K_14KD; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 182 AA; 20884 MW; B5D6890232342905 CRC64; MIRLYNVLRK NRYLSDANNT EVVEVAEDEI QSTEEIAEPE VETNAGLNKA LDTYRKLIEK KVDAEPLTEK EQDDLEKKIK EIESREIVET VEEHDPVEIP CEKNKVTIGP PTLTRFEKAR IMGARALQLS LGAPPFIPIP KTARISLDIS MEELEQRVIP ITIRRVLPNG DYQNIPIDYF EK // ID A9A5V5_NITMS Unreviewed; 330 AA. AC A9A5V5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ABX13110.1}; GN OrderedLocusNames=Nmar_1214 {ECO:0000313|EMBL:ABX13110.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13110.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13110.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13110.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13110.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5V5; -. DR STRING; 436308.Nmar_1214; -. DR EnsemblBacteria; ABX13110; ABX13110; Nmar_1214. DR KEGG; nmr:Nmar_1214; -. DR eggNOG; arCOG00586; Archaea. DR eggNOG; COG1192; LUCA. DR HOGENOM; HOG000000408; -. DR OMA; VIYKGYE; -. DR BioCyc; NMAR436308:GI3J-1247-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR025669; AAA_dom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF13614; AAA_31; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 330 AA; 37280 MW; 45D6170AB1EED342 CRC64; MAQNIVLFNN KGGVGKTTFL FHLGYALEKM GKKILFVDLD PQCNLTSCIC TDDELDTLWK TQNSVFYAVE PLIKGTGDIA DIKPYKVKDR EIRLIAGDLL LSGFEELLSS AWTDTLAGNE IGFRRTSSIY RLIKKIANAN DIDYVLVDVG PNLGSLNRSV LLSCDYFFVP LVPDLFSLRG LENIGITFKK WIDDWTNAKN RFIQNNESLT IDLQDGKPVF AGYINQQFNI YRGVETKAWK HWSAQVPQII EEKLISKLRE IDENMVLDLN NGSYKLGNFK SYHSLAPKSQ QMKKPIFELS GPGIVGIHKE NSLKCKADFE KLAKKIIANI // ID A9A620_NITMS Unreviewed; 113 AA. AC A9A620; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE RecName: Full=Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; GN Name=nac {ECO:0000256|HAMAP-Rule:MF_00814}; GN OrderedLocusNames=Nmar_1602 {ECO:0000313|EMBL:ABX13498.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13498.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13498.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13498.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Contacts the emerging nascent chain on the ribosome. CC {ECO:0000256|HAMAP-Rule:MF_00814}. CC -!- SUBUNIT: Homodimer. Interacts with the ribosome. Binds ribosomal CC RNA. {ECO:0000256|HAMAP-Rule:MF_00814}. CC -!- SIMILARITY: Belongs to the NAC-alpha family. {ECO:0000256|HAMAP- CC Rule:MF_00814}. CC -!- SIMILARITY: Contains 1 NAC-A/B (NAC-alpha/beta) domain. CC {ECO:0000256|HAMAP-Rule:MF_00814}. CC -!- SIMILARITY: Contains 1 UBA domain. {ECO:0000256|HAMAP- CC Rule:MF_00814}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13498.1; -; Genomic_DNA. DR ProteinModelPortal; A9A620; -. DR STRING; 436308.Nmar_1602; -. DR EnsemblBacteria; ABX13498; ABX13498; Nmar_1602. DR KEGG; nmr:Nmar_1602; -. DR eggNOG; arCOG04061; Archaea. DR eggNOG; COG1308; LUCA. DR HOGENOM; HOG000225886; -. DR KO; K03626; -. DR OMA; PRKMKQM; -. DR BioCyc; NMAR436308:GI3J-1646-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00814; NAC_arch; 1. DR InterPro; IPR005231; NAC_arc. DR InterPro; IPR002715; Nas_poly-pep-assoc_cplx_dom. DR InterPro; IPR009060; UBA-like. DR Pfam; PF01849; NAC; 1. DR SMART; SM01407; NAC; 1. DR SUPFAM; SSF46934; SSF46934; 1. DR PROSITE; PS51151; NAC_AB; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Protein transport {ECO:0000256|HAMAP-Rule:MF_00814}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00814}; KW Transport {ECO:0000256|HAMAP-Rule:MF_00814}. FT DOMAIN 3 71 NAC-A/B. {ECO:0000256|HAMAP- FT Rule:MF_00814}. FT DOMAIN 3 71 NAC-A/B (NAC-alpha/beta). FT {ECO:0000259|PROSITE:PS51151}. FT DOMAIN 73 111 UBA. {ECO:0000256|HAMAP-Rule:MF_00814}. SQ SEQUENCE 113 AA; 12692 MW; AFCF47DC04DB611F CRC64; MMRGGNREMR RMMDKMGLDM NELPNVQEVT IKTDKKEIII SKPSVTEMKA KDNSIFTVTA DSYEERELEV PIFSEEDIQL VSQQAGVDEE KAKAALEEAK GDLARAILLL TTG // ID A9A3M0_NITMS Unreviewed; 388 AA. AC A9A3M0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 63. DE RecName: Full=DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; GN Name=radA {ECO:0000256|HAMAP-Rule:MF_00348}; GN OrderedLocusNames=Nmar_1386 {ECO:0000313|EMBL:ABX13282.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13282.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13282.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13282.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in DNA repair and in homologous recombination. CC Binds and assemble on single-stranded DNA to form a nucleoprotein CC filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes CC DNA strand exchange between homologous DNA molecules. CC {ECO:0000256|HAMAP-Rule:MF_00348}. CC -!- SIMILARITY: Belongs to the eukaryotic RecA-like protein family. CC {ECO:0000256|HAMAP-Rule:MF_00348}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13282.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M0; -. DR STRING; 436308.Nmar_1386; -. DR EnsemblBacteria; ABX13282; ABX13282; Nmar_1386. DR KEGG; nmr:Nmar_1386; -. DR eggNOG; arCOG00415; Archaea. DR eggNOG; COG0468; LUCA. DR HOGENOM; HOG000227426; -. DR KO; K04483; -. DR OMA; TADIGES; -. DR BioCyc; NMAR436308:GI3J-1421-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003684; F:damaged DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008094; F:DNA-dependent ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00348; RadA; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR013632; DNA_recomb/repair_Rad51_C. DR InterPro; IPR011938; DNA_recomb/repair_RadA. DR InterPro; IPR016467; DNA_recomb/repair_RecA-like. DR InterPro; IPR010995; DNA_repair_Rad51/TF_NusA_a-hlx. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR020588; RecA_ATP-bd. DR InterPro; IPR020587; RecA_monomer-monomer_interface. DR Pfam; PF08423; Rad51; 1. DR PIRSF; PIRSF005856; Rad51; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF47794; SSF47794; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR02236; recomb_radA; 1. DR PROSITE; PS50162; RECA_2; 1. DR PROSITE; PS50163; RECA_3; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00348}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA damage {ECO:0000256|HAMAP-Rule:MF_00348, KW ECO:0000256|SAAS:SAAS00554563}; KW DNA recombination {ECO:0000256|HAMAP-Rule:MF_00348, KW ECO:0000256|SAAS:SAAS00434332}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00348}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00348}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 84 255 RECA_2. {ECO:0000259|PROSITE:PS50162}. FT DOMAIN 260 321 RECA_3. {ECO:0000259|PROSITE:PS50163}. SQ SEQUENCE 388 AA; 42525 MW; 0421B5C265B44184 CRC64; MVEDLRLDSL EGVGPVTTRK LSDAGVHNVM DLIVRGPVEI AEITGMEKDT AEKIVNKARQ HLVDGGLIAK HFTSASEIYK HRQSIGKITT GTNCLDTLFD GGLETQALTE VYGEFGCGKT QFAHTMSVMV QKTKEEGGLE GSVLYIDTEN TFRPERIVSI AQAHEMDPEK VLDNIIVARA YNSAHQTLIL EEAGPIIEEN NIKLIVADSA VGLFRSEYLG RGTLSNRQQK LNHFVHLLSR IAETYNCAAI ATNQVMASPD VFFGDPTRPI GGNVVAHTST YRIYFKKSGK KRIARMVDSP HHPEEEVIFA LGEAGVIDPE EAEKKTKKTT KKATTKKAKE PEVETKVETP GESTETPEVE VTAKTPEVET VEAPPVDAEA DDSEPVEE // ID A9A1I0_NITMS Unreviewed; 187 AA. AC A9A1I0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=Ribosomal protein L31e {ECO:0000313|EMBL:ABX13159.1}; GN OrderedLocusNames=Nmar_1263 {ECO:0000313|EMBL:ABX13159.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13159.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13159.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13159.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13159.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I0; -. DR STRING; 436308.Nmar_1263; -. DR EnsemblBacteria; ABX13159; ABX13159; Nmar_1263. DR KEGG; nmr:Nmar_1263; -. DR eggNOG; arCOG04473; Archaea. DR eggNOG; COG2097; LUCA. DR HOGENOM; HOG000107566; -. DR OMA; RAINMIK; -. DR BioCyc; NMAR436308:GI3J-1296-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 3.10.440.10; -; 1. DR HAMAP; MF_00410; Ribosomal_L31e; 1. DR InterPro; IPR000054; Ribosomal_L31e. DR InterPro; IPR023621; Ribosomal_L31e_dom. DR PANTHER; PTHR10956; PTHR10956; 1. DR Pfam; PF01198; Ribosomal_L31e; 1. DR ProDom; PD006030; Ribosomal_L31e; 1. DR SMART; SM01380; Ribosomal_L31e; 1. DR SUPFAM; SSF54575; SSF54575; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX13159.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX13159.1}. SQ SEQUENCE 187 AA; 21559 MW; 86CC5BBDF8F81AED CRC64; MSQELERVYT IPLGKVLLSQ SQHRAVRAIN MIKEFARHHM KVEDIKIEED LAHQIWAKGI RSPPRKIRVR MSKTDEGYVL VSPYEEEIES KVTPEKETPK VEDKVEEPTK EETKVEAEVE EPEAETKVEA EVEEPTKEEA PAKEEKPSKE EPKKEEAPAK EEPKVEDKVE EPTKEAPSEK PKKAEKE // ID A9A155_NITMS Unreviewed; 341 AA. AC A9A155; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=Glycosyl transferase group 1 {ECO:0000313|EMBL:ABX12016.1}; GN OrderedLocusNames=Nmar_0116 {ECO:0000313|EMBL:ABX12016.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12016.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12016.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12016.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12016.1; -; Genomic_DNA. DR ProteinModelPortal; A9A155; -. DR STRING; 436308.Nmar_0116; -. DR CAZy; GT4; Glycosyltransferase Family 4. DR EnsemblBacteria; ABX12016; ABX12016; Nmar_0116. DR KEGG; nmr:Nmar_0116; -. DR eggNOG; arCOG01403; Archaea. DR eggNOG; COG0438; LUCA. DR HOGENOM; HOG000077288; -. DR OMA; DYSRIRT; -. DR BioCyc; NMAR436308:GI3J-119-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR InterPro; IPR001296; Glyco_trans_1. DR InterPro; IPR028098; Glyco_trans_4-like_N. DR Pfam; PF13439; Glyco_transf_4; 1. DR Pfam; PF00534; Glycos_transf_1; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12016.1}. FT DOMAIN 160 315 Glycos_transf_1. FT {ECO:0000259|Pfam:PF00534}. FT COILED 294 318 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 341 AA; 38214 MW; 965AE1A1278C9B36 CRC64; MKILIISPTQ EGIGGVARHV QGLTKFLKND GHEVDVISSE NTFTIPIRKL KNPSFMLSSF LKTKFSKKYD VVHAQNVVSA FAMKNVLGKK LLAIHGIHHE QVDHLHGKTA GNVAKDYEDK ALNWVDAITV SSKEMLDYYS QKGLNTFFLP NALDIQSITK KSNRKFDKQI VYAARLSKEK GILEVLDVAE KLPQDIHLLI LGSGVEENKV KELSELQKNI HFLGYQNREN TLSIIRGSDL LIQPSRMEGG LSYTLLESMA CGTPIICTDV GGAKDTLSHM KNAFIIKPEN STELKNAINQ LMNNSKQREE LKNNALDEIK NHDWSVVGPK YVEIYQKLLS S // ID A9A5N8_NITMS Unreviewed; 147 AA. AC A9A5N8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13043.1}; GN OrderedLocusNames=Nmar_1147 {ECO:0000313|EMBL:ABX13043.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13043.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13043.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13043.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 3 HTH asnC-type DNA-binding domains. CC {ECO:0000256|RuleBase:RU000704}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13043.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N8; -. DR STRING; 436308.Nmar_1147; -. DR EnsemblBacteria; ABX13043; ABX13043; Nmar_1147. DR KEGG; nmr:Nmar_1147; -. DR eggNOG; arCOG01585; Archaea. DR eggNOG; COG1522; LUCA. DR OMA; FERFFCC; -. DR BioCyc; NMAR436308:GI3J-1179-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR000485; AsnC-type_HTH_dom. DR InterPro; IPR013603; TRASH_TR_C_arc. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF08394; Arc_trans_TRASH; 1. DR Pfam; PF13404; HTH_AsnC-type; 1. DR PRINTS; PR00033; HTHASNC. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS50956; HTH_ASNC_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000704}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000704}; KW Transcription regulation {ECO:0000256|RuleBase:RU000704}. FT DOMAIN 5 66 HTH asnC-type DNA-binding. FT {ECO:0000259|PROSITE:PS50956}. SQ SEQUENCE 147 AA; 16803 MW; DF91AAC2CB9A94D6 CRC64; MPHELDEVDI GIIQSLQEDG RKSFRQISRE LDISTPTIQA RYQRLVNIGL IKSISPIIDS SNLDSDHKEK IETCSCHSDG HHDVSLESGM SVKLKCDFCE GPVGQKPHVY KFANFERFFC CNTCKTQYKE KNNGRIQSLI EKAREEN // ID A9A5R8_NITMS Unreviewed; 590 AA. AC A9A5R8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE SubName: Full=Oligoendopeptidase, pepF/M3 family {ECO:0000313|EMBL:ABX13073.1}; GN OrderedLocusNames=Nmar_1177 {ECO:0000313|EMBL:ABX13073.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13073.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13073.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13073.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13073.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5R8; -. DR STRING; 436308.Nmar_1177; -. DR EnsemblBacteria; ABX13073; ABX13073; Nmar_1177. DR KEGG; nmr:Nmar_1177; -. DR eggNOG; arCOG04758; Archaea. DR eggNOG; COG1164; LUCA. DR HOGENOM; HOG000007703; -. DR KO; K08602; -. DR OMA; ASTANEW; -. DR BioCyc; NMAR436308:GI3J-1209-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR Gene3D; 3.40.390.10; -; 1. DR InterPro; IPR024079; MetalloPept_cat_dom. DR InterPro; IPR001567; Pept_M3A_M3B. DR InterPro; IPR011977; Pept_M3B_clade3. DR Pfam; PF01432; Peptidase_M3; 1. DR TIGRFAMs; TIGR02290; M3_fam_3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 590 AA; 67585 MW; 782C819BC2C1D8C0 CRC64; MSQYQLGMWN LSELAKNPKS SAFQKQIKEL ENQAEKFEKI KSKLDPKMSS KKFMEILSQV EEISEKMSKI GGYASLSYSS DTQSDEATSL MTRMSKLGSD ISNKILFFDL WWKTQVDEKN AKRLIKDAGE LSEYLAHKRL IAKYSLSEPE ERIINTLDVT GISALVKLYD KITNAFEYQM KIGNKTKKMT REELTNYVRH TNPKIRETAY KTILGKYNEN KGVVGEIYQN IALNWKDEGI DIRGYRTPIS MRNIGNDVDD KTIESLLLVC KKNAPVFQKF FVQKAKMLKM KKLRRYDIYA PAAANIKEKN YSYNKSVKLV FESLGKFSNT LEDFARKVFN ENHIDSEVRQ GKRDGAFCST LTPKITPYVL VNFTGKSRDV FTLAHELGHA VHSQAAQDRS ILVQDAPLPL AETASTFSEL LLYDNISDKI SDDEKKIMLS EKIDDLYATI LRQSFFTIFE IDAHKQIGEG TTIDEISKTY LQNLKQQFGK SVDVTDDFAI EWSCIPHFYH TPFYCYAYSF GNLLALSLFQ RYKKEGKDFV PAYIDILAAG GSKKPEKLLK EHGLDIQSTK FWQEGFDYVN GQVKALSSLN // ID A9A3L8_NITMS Unreviewed; 99 AA. AC A9A3L8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE RecName: Full=50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; GN Name=rpl21e {ECO:0000256|HAMAP-Rule:MF_00369}; GN OrderedLocusNames=Nmar_1384 {ECO:0000313|EMBL:ABX13280.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13280.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13280.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13280.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein L21e family. CC {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00541424}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13280.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3L8; -. DR STRING; 436308.Nmar_1384; -. DR EnsemblBacteria; ABX13280; ABX13280; Nmar_1384. DR KEGG; nmr:Nmar_1384; -. DR eggNOG; arCOG04129; Archaea. DR eggNOG; COG2139; LUCA. DR HOGENOM; HOG000106438; -. DR KO; K02889; -. DR OMA; GLPHRRY; -. DR BioCyc; NMAR436308:GI3J-1419-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.30.70; -; 1. DR HAMAP; MF_00369; Ribosomal_L21e; 1. DR InterPro; IPR001147; Ribosomal_L21e. DR InterPro; IPR022856; Ribosomal_L21e_arc. DR InterPro; IPR008991; Translation_prot_SH3-like. DR PANTHER; PTHR20981; PTHR20981; 1. DR Pfam; PF01157; Ribosomal_L21e; 1. DR SUPFAM; SSF50104; SSF50104; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00369, KW ECO:0000256|SAAS:SAAS00423999, ECO:0000313|EMBL:ABX13280.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00369, KW ECO:0000256|SAAS:SAAS00423999, ECO:0000313|EMBL:ABX13280.1}. SQ SEQUENCE 99 AA; 11184 MW; BB07A0DDA7A886AF CRC64; MATKKSSGRS HGFKHKSRSV MKKDAPRGVS FLLREYKEGQ QALVIIDPRQ HKGLPHRRYH GKVGMITNVG RRAVTLDVKL GNKSKTLITR LDHIKPFGV // ID A9A5A2_NITMS Unreviewed; 186 AA. AC A9A5A2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 60. DE RecName: Full=Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00239}; DE Short=CK {ECO:0000256|HAMAP-Rule:MF_00239}; DE EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00239}; DE AltName: Full=Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00239}; GN Name=cmk {ECO:0000256|HAMAP-Rule:MF_00239}; GN OrderedLocusNames=Nmar_0405 {ECO:0000313|EMBL:ABX12301.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12301.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12301.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12301.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + (d)CMP = ADP + (d)CDP. CC {ECO:0000256|HAMAP-Rule:MF_00239}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00239}. CC -!- SIMILARITY: Belongs to the cytidylate kinase family. Type 2 CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00239}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12301.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5A2; -. DR STRING; 436308.Nmar_0405; -. DR EnsemblBacteria; ABX12301; ABX12301; Nmar_0405. DR KEGG; nmr:Nmar_0405; -. DR eggNOG; arCOG01037; Archaea. DR eggNOG; COG1102; LUCA. DR HOGENOM; HOG000105913; -. DR KO; K00945; -. DR OMA; SYYEIDI; -. DR BioCyc; NMAR436308:GI3J-422-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004127; F:cytidylate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006220; P:pyrimidine nucleotide metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00239; Cytidyl_kinase_type2; 1. DR InterPro; IPR026865; Cmk2-like. DR InterPro; IPR011892; Cyt_kin_arch. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF13189; Cytidylate_kin2; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00239}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00239}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000313|EMBL:ABX12301.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00239}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00239, KW ECO:0000313|EMBL:ABX12301.1}. SQ SEQUENCE 186 AA; 21213 MW; 5E2C89941EA0CD35 CRC64; MTKSIVISGP PAVGKTTVAK GLAEEFSLQY LSGGDVLKEM AKEQGFDSAG DDWWDTEEGM KFLNQREKNS EFDKKLDEKL TKLFNEGGMV ITSYTLPWLI KDGIRIWLEG SHESSTKRMQ TRDDMSSEDA YQITKQRFDK NKALYKKLYD FDFGDDKSVF DVIINTDNLT AQQVIDVAKE TVRKLL // ID A9A3V0_NITMS Unreviewed; 251 AA. AC A9A3V0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 38. DE SubName: Full=Asparagine synthase {ECO:0000313|EMBL:ABX13362.1}; GN OrderedLocusNames=Nmar_1466 {ECO:0000313|EMBL:ABX13362.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13362.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13362.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13362.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13362.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V0; -. DR STRING; 436308.Nmar_1466; -. DR EnsemblBacteria; ABX13362; ABX13362; Nmar_1466. DR KEGG; nmr:Nmar_1466; -. DR eggNOG; arCOG00071; Archaea. DR eggNOG; COG0367; LUCA. DR HOGENOM; HOG000107902; -. DR KO; K01953; -. DR OMA; GIDELFC; -. DR BioCyc; NMAR436308:GI3J-1503-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004066; F:asparagine synthase (glutamine-hydrolyzing) activity; IEA:InterPro. DR GO; GO:0006529; P:asparagine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR001962; Asn_synthase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00733; Asn_synthase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 15 149 Asparagine synthetase. FT {ECO:0000259|Pfam:PF00733}. SQ SEQUENCE 251 AA; 28225 MW; 98BE9B5D437B9167 CRC64; MDAKYQELFD NIKTAITQTV TDKKIGIAYS GGVDSTLISK ICKDMDYDIT LLTIGFAESH DILFAKEVNE QLNYPHHILE IEPETFPSIS SGIHDKIKTD NLSWNENCIA FHYVSKLAKS LGICTVVTAN GIDELFCGYN AYREAFSGGE SKIQEVMEDK LDNELKMMKA VNMIASEFGV QILQPLLSPD FITYAKTVPI SDKITDSEDI YRKHMIRKLA SKVGVPEVSC NKRKKALQYG SKIHKTLLKT R // ID A9A126_NITMS Unreviewed; 217 AA. AC A9A126; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=RecA/RadA recombinase-like protein {ECO:0000313|EMBL:ABX11987.1}; GN OrderedLocusNames=Nmar_0087 {ECO:0000313|EMBL:ABX11987.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11987.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11987.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11987.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11987.1; -; Genomic_DNA. DR ProteinModelPortal; A9A126; -. DR STRING; 436308.Nmar_0087; -. DR EnsemblBacteria; ABX11987; ABX11987; Nmar_0087. DR KEGG; nmr:Nmar_0087; -. DR eggNOG; arCOG00417; Archaea. DR eggNOG; COG0468; LUCA. DR HOGENOM; HOG000110754; -. DR KO; K04482; -. DR OMA; CVETASE; -. DR BioCyc; NMAR436308:GI3J-88-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008094; F:DNA-dependent ATPase activity; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR013632; DNA_recomb/repair_Rad51_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR020588; RecA_ATP-bd. DR Pfam; PF08423; Rad51; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50162; RECA_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA damage {ECO:0000256|SAAS:SAAS00554563}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 157 RECA_2. {ECO:0000259|PROSITE:PS50162}. SQ SEQUENCE 217 AA; 24555 MW; E201A76E7959F282 CRC64; MISTGLEKLD KSLFGGIPNG VIVDIFGKNG TGKTQLLLQL AINSIKKGGH VLYFDTTGGF RPERILDIQK ESESQSDFLN QITVSRLTNT SEQINSIKNI ERNFSLIVID NITDLFSYEY QKDESIFEKN SLFMKYMHDL ANFAISNRIP IVVTNMIRNL EGKEIENMKS AIDPFTHIKI HLTKNSSKFD GKIYSPFIEN SFSYTIDKLG LSPSEDI // ID A9A158_NITMS Unreviewed; 387 AA. AC A9A158; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 40. DE SubName: Full=Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ABX12019.1}; GN OrderedLocusNames=Nmar_0119 {ECO:0000313|EMBL:ABX12019.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12019.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12019.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12019.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12019.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0119; -. DR EnsemblBacteria; ABX12019; ABX12019; Nmar_0119. DR KEGG; nmr:Nmar_0119; -. DR eggNOG; arCOG02209; Archaea. DR eggNOG; COG2244; LUCA. DR OMA; WILFAYS; -. DR BioCyc; NMAR436308:GI3J-122-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR002797; Polysacc_synth. DR Pfam; PF01943; Polysacc_synt; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 50 68 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 104 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 110 129 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 179 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 265 292 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 298 318 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 330 349 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 355 375 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 387 AA; 42232 MW; A61CA5FF251DA68A CRC64; MVSLKDKIKN IKGIKDLTSI GFANISGNAI SALFWFYLAS LLTTTEYGEL SYLISIAGLA SVLSFVGGSH TITVLTAKKI NILSTLVTII LLIGVTIMFV LYLLFSNLSI SMYAISYLIY GVSIGEILGN KLYRTYSILF IVQKATMVLA SILLYPNLGI DGVILGYAIS HFVPGYRIFK MLKGKFSFSS LKPQWSFISN NYGLVISRAF TGQIDKIIIA PILGFALLGN YHLGIQFLSL LSILPMSMMQ YILPQESTGH SHVILKKLAV IVAVLFAVLG IFLGPIILPH FFPKFESAAE IIPIMSLVVI PRTITAITNA KLLGILSTRF IVIGVAIYLT IQVSGILILG ELYSLNGVAW ALVLAEAGQA IFLYVSSKYF LKKTSNA // ID A9A309_NITMS Unreviewed; 172 AA. AC A9A309; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12137.1}; GN OrderedLocusNames=Nmar_0241 {ECO:0000313|EMBL:ABX12137.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12137.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12137.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12137.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12137.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0241; -. DR EnsemblBacteria; ABX12137; ABX12137; Nmar_0241. DR KEGG; nmr:Nmar_0241; -. DR eggNOG; arCOG00552; Archaea. DR eggNOG; ENOG411258C; LUCA. DR HOGENOM; HOG000109852; -. DR KO; K09723; -. DR OMA; GEYQIST; -. DR BioCyc; NMAR436308:GI3J-248-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR021151; GINS_complex. DR Pfam; PF05916; Sld5; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 172 AA; 19952 MW; 0F0CDCAEF80557AD CRC64; MEIDKVEKVH SIGYRLKDAK VTVNQDYKFN VAGLKAEGKQ GEVNNMPQWV GKILADNNLG VLDSPDMITE LKQALSKEKM VGEYQISTLD SHFYIKLKES MKELNRDDFD KVESMMLELF RMRRGKLVKL ADSIKLNSDL YNKLTVEEVV FYKTIYENSI EFENQIKGEQ DE // ID A9A329_NITMS Unreviewed; 249 AA. AC A9A329; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 61. DE SubName: Full=Succinate dehydrogenase and fumarate reductase iron-sulfur protein {ECO:0000313|EMBL:ABX12157.1}; DE EC=1.3.99.1 {ECO:0000313|EMBL:ABX12157.1}; GN OrderedLocusNames=Nmar_0261 {ECO:0000313|EMBL:ABX12157.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12157.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12157.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12157.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12157.1; -; Genomic_DNA. DR ProteinModelPortal; A9A329; -. DR STRING; 436308.Nmar_0261; -. DR EnsemblBacteria; ABX12157; ABX12157; Nmar_0261. DR KEGG; nmr:Nmar_0261; -. DR eggNOG; arCOG00962; Archaea. DR eggNOG; COG0479; LUCA. DR HOGENOM; HOG000160590; -. DR KO; K00240; -. DR OMA; FKNFFGS; -. DR BioCyc; NMAR436308:GI3J-269-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0000104; F:succinate dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:InterPro. DR Gene3D; 3.10.20.30; -; 1. DR InterPro; IPR001041; 2Fe-2S_ferredoxin-type. DR InterPro; IPR006058; 2Fe2S_fd_BS. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR009051; Helical_ferredxn. DR InterPro; IPR004489; Succ_DH/fum_Rdtase_Fe-S. DR InterPro; IPR025192; Succ_DH/fum_Rdtase_N. DR Pfam; PF13085; Fer2_3; 1. DR Pfam; PF13183; Fer4_8; 1. DR SUPFAM; SSF46548; SSF46548; 1. DR SUPFAM; SSF54292; SSF54292; 1. DR TIGRFAMs; TIGR00384; dhsB; 1. DR PROSITE; PS00197; 2FE2S_FER_1; 1. DR PROSITE; PS51085; 2FE2S_FER_2; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12157.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 14 104 2Fe-2S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51085}. FT DOMAIN 152 181 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 249 AA; 28144 MW; 0F54AB7B1A6E8AF8 CRC64; MAQVSSIADD QSSQSITLRI ARYNPEKDSE RQFMEFTVPY EKWTTVLEAI LDVKKHFDHS VAVRYSCRQA TCGSCGMIIN GKPRLACFTK ISELDSNIVT VEPMNNFPII RDLAVKFERL FDTHHKIKPY LDRDDTELES DAKEFLQSPE ELEQYIQFAN CIKCGLCNSA CPTMATDSSF VGPQALAQAY RYVADSRDKG KDSRLKIIDE SHGIWRCHFA GSCSQVCPKG VDPAMGIQLL RGYMLGFRS // ID A9A3P7_NITMS Unreviewed; 53 AA. AC A9A3P7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13309.1}; GN OrderedLocusNames=Nmar_1413 {ECO:0000313|EMBL:ABX13309.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13309.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13309.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13309.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13309.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1413; -. DR EnsemblBacteria; ABX13309; ABX13309; Nmar_1413. DR KEGG; nmr:Nmar_1413; -. DR eggNOG; arCOG07442; Archaea. DR eggNOG; ENOG410Y0R8; LUCA. DR HOGENOM; HOG000109203; -. DR OMA; TAYCVKC; -. DR BioCyc; NMAR436308:GI3J-1448-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 53 AA; 6079 MW; 1A6E05CF73BC52E9 CRC64; MTIFRMVTAY CVKCREKRDI KDPKETKLKN GRPAVKGTCP ECGTNVFRIG KME // ID A9A4A6_NITMS Unreviewed; 97 AA. AC A9A4A6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12595.1}; GN OrderedLocusNames=Nmar_0699 {ECO:0000313|EMBL:ABX12595.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12595.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12595.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12595.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12595.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0699; -. DR EnsemblBacteria; ABX12595; ABX12595; Nmar_0699. DR KEGG; nmr:Nmar_0699; -. DR eggNOG; arCOG08659; Archaea. DR eggNOG; ENOG41111SI; LUCA. DR HOGENOM; HOG000105682; -. DR OMA; YTENEAD; -. DR BioCyc; NMAR436308:GI3J-724-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 97 AA; 11138 MW; 45E838ADE3741B7D CRC64; MIQREELEQI LNFVSNRWSE VAKEKDSKIM ENLPSDFWMN SVGGKTANNG FWVTTLMYTE NEADAAAFKE VLLRWQAKGQ EGDKDKAPDL IQIGKKK // ID A9A1P6_NITMS Unreviewed; 167 AA. AC A9A1P6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13561.1}; GN OrderedLocusNames=Nmar_1665 {ECO:0000313|EMBL:ABX13561.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13561.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13561.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13561.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13561.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1P6; -. DR STRING; 436308.Nmar_1665; -. DR EnsemblBacteria; ABX13561; ABX13561; Nmar_1665. DR KEGG; nmr:Nmar_1665; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR HOGENOM; HOG000023846; -. DR BioCyc; NMAR436308:GI3J-1710-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 91 165 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 167 AA; 18489 MW; 27B262A46B921281 CRC64; MNYLILALIP IVLSIGGVSA FAESVPEWVK NTALWYGEGI VSESEFLNMI KFLIENEVIV IDTVMEPVPQ VVNAQVVIPN GNFDVTGAGF YSPLNLEISV GTTVTWVNDD SVPHNIQSID EGGKVIQLFN SPPLNTGDRF EFTFEEKGVF NYYCSFHPWR VGLVTIS // ID A9A5L4_NITMS Unreviewed; 236 AA. AC A9A5L4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX12725.1}; GN OrderedLocusNames=Nmar_0829 {ECO:0000313|EMBL:ABX12725.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12725.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12725.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12725.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12725.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5L4; -. DR STRING; 436308.Nmar_0829; -. DR EnsemblBacteria; ABX12725; ABX12725; Nmar_0829. DR KEGG; nmr:Nmar_0829; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000105582; -. DR OMA; EYHDILY; -. DR BioCyc; NMAR436308:GI3J-856-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 40 233 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 236 AA; 25929 MW; 8D1DDC800AF06DDC CRC64; MIHGPSLAIG AGISAVVLVI VFLGFDGISN ESELVMQPTP TIQPEGPARV TMETFLANGS PILGDSNAPI TLVEFGDYQC HFCNVFFHST EGDILENYVE TGKVRMIFKD YNIIGPDSIN ASHGAHCAND QGMFWEYHDI LYNNWTGENN GWASSENLLR FAQEIGLDVD TWSECMIDRI HSKTIVASNE DARSLELTGT PAFFVIGPDG EVTSLFGAKP YSTFQMTFDS ELEKLS // ID A9A2G9_NITMS Unreviewed; 424 AA. AC A9A2G9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; GN OrderedLocusNames=Nmar_1312 {ECO:0000313|EMBL:ABX13208.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13208.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13208.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13208.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the Glu/Leu/Phe/Val dehydrogenases family. CC {ECO:0000256|PIRNR:PIRNR000185}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13208.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G9; -. DR STRING; 436308.Nmar_1312; -. DR EnsemblBacteria; ABX13208; ABX13208; Nmar_1312. DR KEGG; nmr:Nmar_1312; -. DR eggNOG; arCOG01352; Archaea. DR eggNOG; COG0334; LUCA. DR HOGENOM; HOG000243801; -. DR OMA; HDLENPR; -. DR BioCyc; NMAR436308:GI3J-1345-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016639; F:oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; IEA:InterPro. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR006095; Glu/Leu/Phe/Val_DH. DR InterPro; IPR006096; Glu/Leu/Phe/Val_DH_C. DR InterPro; IPR006097; Glu/Leu/Phe/Val_DH_dimer_dom. DR InterPro; IPR014362; Glu_DH. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00208; ELFV_dehydrog; 1. DR Pfam; PF02812; ELFV_dehydrog_N; 1. DR PIRSF; PIRSF000185; Glu_DH; 1. DR PRINTS; PR00082; GLFDHDRGNASE. DR SMART; SM00839; ELFV_dehydrog; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00074; GLFV_DEHYDROGENASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000256|PIRNR:PIRNR000185}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 191 421 ELFV_dehydrog. FT {ECO:0000259|SMART:SM00839}. SQ SEQUENCE 424 AA; 46311 MW; A569817A9335E826 CRC64; MVKNDPFANA TKQVNDACDI LGIKDKGIRD YLAIPNRILR VKIPVTMDNG KVRVFTGFRS QHNNDRGPYK GGIRYFNPEG GVEYMEREVM ALSSWMTWKC AIVDVPLGGG KGGIYVNPKT EKLSENELER LTRGFAYKIS EVIGPEKDIP APDVYTTGKE MTQIMDTFSK LNGNKYSPGV ITGKPISMGG SLARNVATGL GAAYTVREAA KTLKVNLKGA KVVLQGFGNA STFAGEYLEK MGAKVIAVSD SKGSISIPKG AKVSKILEHK QKKGSVVGFP GSKKISTEEL LTTKCDVLVP GALENQIDAK IAKNLKCKII AEAANGPTLP EADPIIYKKN ILVIPDILAN SGGVCISYLE WVQNNMGYYW TFDEVANKME KNITQGFKDA YALSKKHKID MRKATMVLAV ERVLDAFNTK GIWP // ID A9A303_NITMS Unreviewed; 61 AA. AC A9A303; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12131.1}; GN OrderedLocusNames=Nmar_0235 {ECO:0000313|EMBL:ABX12131.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12131.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12131.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12131.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12131.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12131; ABX12131; Nmar_0235. DR KEGG; nmr:Nmar_0235; -. DR eggNOG; arCOG05278; Archaea. DR eggNOG; COG5466; LUCA. DR BioCyc; NMAR436308:GI3J-241-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR009409; DUF1059. DR Pfam; PF06348; DUF1059; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 61 AA; 6626 MW; 21FD30551F22FC57 CRC64; MKSMAKTISC KDAGKDCGWS ASADTEEELM TIVTEHVLAE HKEIELNAES ISGIKSLIKE S // ID A9A4G0_NITMS Unreviewed; 70 AA. AC A9A4G0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12649.1}; GN OrderedLocusNames=Nmar_0753 {ECO:0000313|EMBL:ABX12649.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12649.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12649.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12649.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12649.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0753; -. DR EnsemblBacteria; ABX12649; ABX12649; Nmar_0753. DR KEGG; nmr:Nmar_0753; -. DR eggNOG; arCOG10544; Archaea. DR eggNOG; ENOG4111131; LUCA. DR BioCyc; NMAR436308:GI3J-779-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 34 55 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 70 AA; 7471 MW; 95BB5D6B06ABA32A CRC64; MIFIGGGMFL AGLVMFYSIE IGQVQPVLRL IKNIGTFVGL SGIGVGVAGI LLYLISRNQP PIQENFDSGE // ID A9A2C8_NITMS Unreviewed; 91 AA. AC A9A2C8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12839.1}; GN OrderedLocusNames=Nmar_0943 {ECO:0000313|EMBL:ABX12839.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12839.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12839.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12839.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12839.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0943; -. DR EnsemblBacteria; ABX12839; ABX12839; Nmar_0943. DR KEGG; nmr:Nmar_0943; -. DR eggNOG; arCOG11285; Archaea. DR eggNOG; ENOG4111127; LUCA. DR BioCyc; NMAR436308:GI3J-971-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 91 AA; 10340 MW; F48745649FA9285B CRC64; MAVLTENAIE EILDYLEKSI TNLAKDAFEN LEVSGGFEGT INFLESQFEI RLENLLVAKG SSTHHLESGM KNKIIQRKQV IIQNITKQYK N // ID A9A308_NITMS Unreviewed; 316 AA. AC A9A308; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Replication factor C {ECO:0000313|EMBL:ABX12136.1}; GN OrderedLocusNames=Nmar_0240 {ECO:0000313|EMBL:ABX12136.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12136.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12136.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12136.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12136.1; -; Genomic_DNA. DR ProteinModelPortal; A9A308; -. DR STRING; 436308.Nmar_0240; -. DR EnsemblBacteria; ABX12136; ABX12136; Nmar_0240. DR KEGG; nmr:Nmar_0240; -. DR eggNOG; arCOG00469; Archaea. DR eggNOG; COG0470; LUCA. DR HOGENOM; HOG000224155; -. DR KO; K04801; -. DR OMA; FRFSPLG; -. DR BioCyc; NMAR436308:GI3J-247-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009378; F:four-way junction helicase activity; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR008921; DNA_pol3_clamp-load_cplx_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR013748; Rep_factorC_C. DR InterPro; IPR008824; RuvB_N. DR Pfam; PF08542; Rep_fac_C; 1. DR Pfam; PF05496; RuvB_N; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF48019; SSF48019; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 38 165 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 316 AA; 35072 MW; 24336A0A3AA94DBB CRC64; MAATGMWVEK YRPMKLSEVV NQTEIIGSLE ALIKDPTDMP HLLFSGSAGV GKTTTALCIS RQILGDYAKD YTLELNASDE RGIGMVREKV KKFSRYAGMA DVPFKIIILD EADEMTSDAQ TALRRIIEDT AKICRFILIA NNISKIIDPI QSRCATFKFT AVPEEDVIKR LEEIAKKEKV KADKKGLKAI YDYSEGDLRH AINLMQATAS LGSISEDNVK ASAGLTKTTD VDEVLKIALS GKVPEAREKM IELIKVYGMS ESDFLKYLNS AVFKSKHDKL SDILEIIAKY DYRILVGSNS EIQLSAMLAE LAKVEN // ID A9A3T8_NITMS Unreviewed; 79 AA. AC A9A3T8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13350.1}; GN OrderedLocusNames=Nmar_1454 {ECO:0000313|EMBL:ABX13350.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13350.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13350.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13350.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13350.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1454; -. DR EnsemblBacteria; ABX13350; ABX13350; Nmar_1454. DR KEGG; nmr:Nmar_1454; -. DR BioCyc; NMAR436308:GI3J-1491-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 79 AA; 9262 MW; DBEBBB872AB3F92B CRC64; MMIGLNYDKL HLENMVRRKL TEEEKEKQKD EQKTRAKASR AARRSGKSIK KEGKVSKSKA KTKEPRSQRK IATINKSRY // ID A9A5N7_NITMS Unreviewed; 374 AA. AC A9A5N7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 56. DE SubName: Full=2-alkenal reductase {ECO:0000313|EMBL:ABX13042.1}; DE EC=1.3.1.74 {ECO:0000313|EMBL:ABX13042.1}; GN OrderedLocusNames=Nmar_1146 {ECO:0000313|EMBL:ABX13042.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13042.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13042.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13042.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13042.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N7; -. DR STRING; 436308.Nmar_1146; -. DR EnsemblBacteria; ABX13042; ABX13042; Nmar_1146. DR KEGG; nmr:Nmar_1146; -. DR eggNOG; arCOG02833; Archaea. DR eggNOG; COG0265; LUCA. DR HOGENOM; HOG000223641; -. DR OMA; KISDMVE; -. DR BioCyc; NMAR436308:GI3J-1178-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0032440; F:2-alkenal reductase [NAD(P)] activity; IEA:UniProtKB-EC. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro. DR Gene3D; 2.30.42.10; -; 1. DR InterPro; IPR001478; PDZ. DR InterPro; IPR009003; Peptidase_S1_PA. DR InterPro; IPR001940; Peptidase_S1C. DR Pfam; PF13180; PDZ_2; 1. DR PRINTS; PR00834; PROTEASES2C. DR SMART; SM00228; PDZ; 1. DR SUPFAM; SSF50156; SSF50156; 1. DR SUPFAM; SSF50494; SSF50494; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13042.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 261 359 PDZ (DHR). {ECO:0000259|SMART:SM00228}. SQ SEQUENCE 374 AA; 39470 MW; 07E4C9BBB762B2DF CRC64; MFRNNSKILL GGVVFSVVLM LGLSVAFLSP VLAQDNSYSS ENLQSNVESS SDLSLVEIFE RSEFGVVSIA VTKTSPHGDA SGVGSGFIFD KEGHIITNNH VVRDSKKIDV TFTDGTSYRA KVVGTDPYAD IAVLKIDVNS EKLYPLPIGD SSNLKVGEQI TAIGNPFGLS GSMTSGIVSQ LGRLLPTGVG FSIPDVIQTD TAINPGNSGG PLLNMKGEVV GVNTAIYSSD GSFSGVGFSI PSNVILKIVP VLITDGEFHH PWVGISSANI TPDLAELLNL EDAKGVLVMT VVKDSPANKA GLRGSSETAV YDEIEYTIGG DIILSIDGKE VRKIDDLLTH LQREKNVGDT LDLGIIRDGK AINVVLTLEP RPGS // ID A9A1K3_NITMS Unreviewed; 399 AA. AC A9A1K3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 51. DE RecName: Full=Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005}; DE EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005}; DE AltName: Full=Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; GN Name=argG {ECO:0000256|HAMAP-Rule:MF_00005}; GN OrderedLocusNames=Nmar_1286 {ECO:0000313|EMBL:ABX13182.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13182.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13182.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13182.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-citrulline + L-aspartate = AMP + CC diphosphate + N(omega)-(L-arginino)succinate. {ECO:0000256|HAMAP- CC Rule:MF_00005}. CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; L- CC arginine from L-ornithine and carbamoyl phosphate: step 2/3. CC {ECO:0000256|HAMAP-Rule:MF_00005}. CC -!- SUBUNIT: Homotetramer. {ECO:0000256|HAMAP-Rule:MF_00005}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00005}. CC -!- SIMILARITY: Belongs to the argininosuccinate synthase family. Type CC 1 subfamily. {ECO:0000256|HAMAP-Rule:MF_00005}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13182.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K3; -. DR STRING; 436308.Nmar_1286; -. DR EnsemblBacteria; ABX13182; ABX13182; Nmar_1286. DR KEGG; nmr:Nmar_1286; -. DR eggNOG; arCOG00112; Archaea. DR eggNOG; COG0137; LUCA. DR HOGENOM; HOG000230093; -. DR KO; K01940; -. DR OMA; PAREWGM; -. DR BioCyc; NMAR436308:GI3J-1319-MONOMER; -. DR UniPathway; UPA00068; UER00113. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004055; F:argininosuccinate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR Gene3D; 3.90.1260.10; -; 1. DR HAMAP; MF_00005; Arg_succ_synth_type1; 1. DR InterPro; IPR001518; Arginosuc_synth. DR InterPro; IPR018223; Arginosuc_synth_CS. DR InterPro; IPR023434; Arginosuc_synth_type_1_subfam. DR InterPro; IPR024074; AS_cat/multimer_dom_body. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00764; Arginosuc_synth; 1. DR TIGRFAMs; TIGR00032; argG; 1. DR PROSITE; PS00564; ARGININOSUCCIN_SYN_1; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00005}; KW Arginine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00005}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00005}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00005}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000313|EMBL:ABX13182.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00005}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT NP_BIND 8 16 ATP. {ECO:0000256|HAMAP-Rule:MF_00005}. FT BINDING 86 86 Citrulline. {ECO:0000256|HAMAP- FT Rule:MF_00005}. FT BINDING 116 116 ATP; via amide nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_00005}. FT BINDING 122 122 Aspartate. {ECO:0000256|HAMAP- FT Rule:MF_00005}. FT BINDING 122 122 Citrulline. {ECO:0000256|HAMAP- FT Rule:MF_00005}. FT BINDING 123 123 Aspartate. {ECO:0000256|HAMAP- FT Rule:MF_00005}. FT BINDING 126 126 Citrulline. {ECO:0000256|HAMAP- FT Rule:MF_00005}. FT BINDING 172 172 Citrulline. {ECO:0000256|HAMAP- FT Rule:MF_00005}. FT BINDING 256 256 Citrulline. {ECO:0000256|HAMAP- FT Rule:MF_00005}. FT BINDING 268 268 Citrulline. {ECO:0000256|HAMAP- FT Rule:MF_00005}. SQ SEQUENCE 399 AA; 44562 MW; 46517E6F50CB2320 CRC64; MTQKGILAFS GGLDTSVVVK YLQDEHDMDV ITVTVDVGQG DDNKKIAAKA KKLGVKKHYN IDARKEFVKD YIFPSIKANA LYQKKYCLAT ALARPLIAEK VLEIAKKEKV TSLAHGCSGK GNDQVRFDIT LRSGSNLPII APIRDKNLDR VTELKFAKKH GIEIDTVAKK FSIDQNLWGR AIEGGVLEDP YNEPPDDAFI WVKTKNLPDK PTYLEIKFEK GIPVGVDGKT MDGQKLIEYI NKKAGDAGVG IVDHIEDRVV GIKSREVYET PAATCLIEAH SDLEKMVHTK HENKFKSIID DEWAYLAYSG LWQDPLKSDL DGFIEASQKP VTGTVKLKLY KGSLRVVGRK SKNSLYSHEI ATYGTESTFD QRLAKGFVEL WGMQSTEANK LQKKRSTKI // ID A9A174_NITMS Unreviewed; 199 AA. AC A9A174; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12360.1}; GN OrderedLocusNames=Nmar_0464 {ECO:0000313|EMBL:ABX12360.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12360.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12360.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12360.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12360.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0464; -. DR EnsemblBacteria; ABX12360; ABX12360; Nmar_0464. DR KEGG; nmr:Nmar_0464; -. DR eggNOG; ENOG4102TMV; Archaea. DR eggNOG; ENOG410XZKQ; LUCA. DR BioCyc; NMAR436308:GI3J-483-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 199 AA; 22736 MW; F0C81DAA36510158 CRC64; MPGLDSLLAN SLKESITKDL GKGMVKKIED RLFEKYGISF AQSIENFDKL DLVLREFFGK GTDGLEKKFF ETIFQSKSKN SKDGWYQLRD ENLSQMILQS FGDPEKKAIL ESATETPKII TDIIKDCNLS QTSGYRKINS LIDDGLLYKT GHIVRDNKKI NKYVCSFSNL RINIENKKTS VELQLMDNEQ SLFVQTIKA // ID A9A260_NITMS Unreviewed; 250 AA. AC A9A260; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12473.1}; GN OrderedLocusNames=Nmar_0577 {ECO:0000313|EMBL:ABX12473.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12473.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12473.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12473.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12473.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0577; -. DR EnsemblBacteria; ABX12473; ABX12473; Nmar_0577. DR KEGG; nmr:Nmar_0577; -. DR eggNOG; arCOG08034; Archaea. DR eggNOG; ENOG41111FT; LUCA. DR OMA; REEHEET; -. DR BioCyc; NMAR436308:GI3J-600-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 7 90 {ECO:0000256|SAM:Coils}. FT COILED 106 172 {ECO:0000256|SAM:Coils}. FT COILED 214 248 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 250 AA; 29110 MW; EFC246EC46B9856F CRC64; MGLFGKKEDA VSENNEESVL KKELETEVES LQNEFRRKQD ELNDIQQKID SVKEEYETAV SNLMLVKKEL NQKKMELDIV LREYKETKEK IIESEKIKNS ESFEEFTKTE ENLSKVKQEL EEITKEYEKT KESVASEQSM LSQIRKQQVE AEKELDEANS RLYNAKEELN KKDEFQDTNI LTPKEREFIQ GDNKSSAGVI EAASAVVGSL KSKLNNAHKE LEAIQLLLEK EREEHEETKK ELDKLKSEKS // ID A9A2P1_NITMS Unreviewed; 172 AA. AC A9A2P1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13568.1}; GN OrderedLocusNames=Nmar_1672 {ECO:0000313|EMBL:ABX13568.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13568.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13568.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13568.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13568.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13568; ABX13568; Nmar_1672. DR KEGG; nmr:Nmar_1672; -. DR eggNOG; ENOG4102U9X; Archaea. DR eggNOG; ENOG4110ZJW; LUCA. DR BioCyc; NMAR436308:GI3J-1717-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 172 AA; 19772 MW; CF911C8DFF250EBC CRC64; MEKQKIIGII SIVVIVVVIG YSLLNVYALE QLEFSGVDNI FRFFEMSTVN GKINICNNTF LPANFNQFNI LIYFERELLG TFTVDSTNIM PDSVFEANGK YMSSSMAQSQ SLFMHFDHLF SNSDNTIRID PRKMDVVMQF QTTIIGIPYL VTEQHTAFDF WNMLNDENNL SC // ID A9A3D0_NITMS Unreviewed; 371 AA. AC A9A3D0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 40. DE SubName: Full=Sulfatase {ECO:0000313|EMBL:ABX12559.1}; GN OrderedLocusNames=Nmar_0663 {ECO:0000313|EMBL:ABX12559.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12559.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12559.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12559.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12559.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3D0; -. DR STRING; 436308.Nmar_0663; -. DR EnsemblBacteria; ABX12559; ABX12559; Nmar_0663. DR KEGG; nmr:Nmar_0663; -. DR eggNOG; arCOG02785; Archaea. DR eggNOG; COG3119; LUCA. DR HOGENOM; HOG000023850; -. DR BioCyc; NMAR436308:GI3J-688-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008484; F:sulfuric ester hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.720.10; -; 2. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR032506; DUF4976. DR InterPro; IPR000917; Sulfatase_N. DR Pfam; PF16347; DUF4976; 1. DR Pfam; PF00884; Sulfatase; 1. DR SUPFAM; SSF53649; SSF53649; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 267 Sulfatase. {ECO:0000259|Pfam:PF00884}. FT DOMAIN 314 366 DUF4976. {ECO:0000259|Pfam:PF16347}. SQ SEQUENCE 371 AA; 42887 MW; 77F9988234A5378D CRC64; MKPNIIFVLL DGARWDRIEN SFEFSDLRKD GIFINNVSTV FPYTSGSLNV IFSGQFGKEN GVDGYYKVLK LKNSIQILPE ILQNYGYFTA RGLLNDKLLS PRGYDLRTVH NEFEDDLNDI HPKLINDVFQ KANGKPVFLF LHFTRIHTFT VSEILDKYDW NDKTFYDLVN SNLKKYDQTI DEAGHYAKKI TNTIKILGEE ENTIIIFFSD HGTGVGERYG ERSYGSFTYE ETIRTFYLFT GSLLLKNKFS DKLRSTLDIM PTILELCKID ENLNLFGKSF AGFLTGETTH LSENPFTFSE TGALEGPFPS PEHSNVFCIK TSNYKLIYYV SNNSWELFDL QKDFHEKNNL IGTLPLIEDD LKQKLLNWIN R // ID A9A3K4_NITMS Unreviewed; 771 AA. AC A9A3K4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Fibronectin type III domain protein {ECO:0000313|EMBL:ABX12936.1}; GN OrderedLocusNames=Nmar_1040 {ECO:0000313|EMBL:ABX12936.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12936.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12936.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12936.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12936.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3K4; -. DR STRING; 436308.Nmar_1040; -. DR EnsemblBacteria; ABX12936; ABX12936; Nmar_1040. DR KEGG; nmr:Nmar_1040; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; arCOG05978; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-1071-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.40.10; -; 3. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR003961; FN3_dom. DR InterPro; IPR013783; Ig-like_fold. DR Pfam; PF00041; fn3; 3. DR SMART; SM00060; FN3; 3. DR SUPFAM; SSF49265; SSF49265; 2. DR SUPFAM; SSF49503; SSF49503; 1. DR PROSITE; PS50853; FN3; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 40 137 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 138 235 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 236 329 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. SQ SEQUENCE 771 AA; 86585 MW; 83D3AFD872FE59B5 CRC64; MRSFFTMNMN KKIFFLFLSL SVLFSFMLSE DAFAQTKPDR VRGLSATAIS TTQIDLSWNE PSDGGLPITG YQIERKKASD PWEIYIADTG NTNTTYSDQG LDPDTRYRYK VAAINAIDIG RSSTAKAATT FAITEPNRVT GLSATTISPT QIDLSWNEPY DGESPITGYQ IERKKASDPW EIYIADTGNT NTTYSDQGLD PDTRYRYKVA AINAIGIGTA STAKAATTTE ITEPDRVTGL TATAISHTQI NLSWNEPYDG ESPITGYQIE RKKASDPWEI YIADTGNTNT TYSDQGLDPD TRYRYKVAAI NAIDIGRSST IVTETTLLPG VYLPPVDTST GTSKIRPPPQ IQGIGLYKFT THVGDDGDTK EYDAPLNLPF DQYFPYSKFS DETDFKNYKE MGAYKKLGLY HDFSKKTLAP KFFAETNQPV QLQIRLWDML SSSKIEHLSL YTYSTSSTTV ENSDVEIIFD KGKPLDVIDP NDIFKYVEVY PSYEDEWLWI NLDLMFQKPM TSSNILLQSW HESRIPSFVQ VDDIWEISNP QSNTDHVDEV NLTEEVEITH GTSNPTCKMD DSCFTPSDAK ILEGGIITWF NTDSFTHTVT SGSVNNNDNR FGYILFPGQT VQHEFPYKGI YDYYCALHPW ANGSVIVYGA DFEKPETSFD ESQPTLLVKS TSGGSLIIEN NDVYVTSSRD LHMNISGHIQ ELSTSNTVKI IIIHPDKITK HMTAIVNSDG FYSMPVVLNK HWMEGTYEII TEYRGEQVAQ LSFLVSDKPV R // ID A9A1H4_NITMS Unreviewed; 297 AA. AC A9A1H4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13153.1}; GN OrderedLocusNames=Nmar_1257 {ECO:0000313|EMBL:ABX13153.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13153.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13153.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13153.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13153.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1257; -. DR EnsemblBacteria; ABX13153; ABX13153; Nmar_1257. DR KEGG; nmr:Nmar_1257; -. DR eggNOG; arCOG08033; Archaea. DR eggNOG; ENOG410Z0R9; LUCA. DR OMA; CGPGTIL; -. DR BioCyc; NMAR436308:GI3J-1290-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 23 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 268 289 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 297 AA; 31914 MW; 733C0FA5A695B7E3 CRC64; MNNHSISQLQ SNRLRNLTNG NSLLKISLGL IFFTILSSAF VYAETMSVDV DGTDYDVDYT VSGMSVSGIE SDTDFISLII SVDVTDSQGI LDITFDRTFF DSVYEGVDDD FIILADGDEP TFSETETTSQ SRTLSIELPA GTEEIEIIGS VFGRTIEDTP VEETPVEETP VEETPVEDTP VEETPVEDTP VEETPVEDTP VEETPVEDTP RTECGPGTIL QDGVCVLDER CGPGTILQDG VCVLEPQTST PEISTPTSTS FKGLGKELGY GLIAAFVVTG AIAIILALMS KAGKSRD // ID A9A338_NITMS Unreviewed; 385 AA. AC A9A338; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=AAA ATPase central domain protein {ECO:0000313|EMBL:ABX12166.1}; GN OrderedLocusNames=Nmar_0270 {ECO:0000313|EMBL:ABX12166.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12166.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12166.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12166.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12166.1; -; Genomic_DNA. DR ProteinModelPortal; A9A338; -. DR STRING; 436308.Nmar_0270; -. DR EnsemblBacteria; ABX12166; ABX12166; Nmar_0270. DR KEGG; nmr:Nmar_0270; -. DR eggNOG; arCOG00470; Archaea. DR eggNOG; COG0470; LUCA. DR HOGENOM; HOG000109606; -. DR KO; K04800; -. DR OMA; MQIDPRE; -. DR BioCyc; NMAR436308:GI3J-280-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00004; AAA; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 34 160 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 385 AA; 43457 MW; BA4DCD8D218E3EFE CRC64; MWSEKYRPQI ISDMVGNEES RAAIMEWFAK WKKGTKPLLL AGPPGIGKTT MAFLVAKQFG YDMIGLNASD VRSKSRINEI LTPVLGNVSV LGTPMIFVDE VDGIHGRGDY GGVAALVDIL KEPTVPIILA ANDDTSDKMK NIKKVVKTIS FKKIPPRLLR VYLENILKKE SAKLSPGSLI KVIDKSRGDI RSMINLTQSM VTGFNPQTET TFENIDVEDG VNAFFKSKSV DEARGVLYSM QIDPREKINA FYSSIVMSSL DPETLAKYLE IISEADMLYG KIVRTQNWRL LRYLNDILIK LYHDDDRVRY AQYNLSWPLL NRIRWDGSKI KSLSSVMAKK LHLSSSAFVT FGLPFVLFCI KNNALELELE ETFGDIIEKE IELIQ // ID A9A4D5_NITMS Unreviewed; 187 AA. AC A9A4D5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12624.1}; GN OrderedLocusNames=Nmar_0728 {ECO:0000313|EMBL:ABX12624.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12624.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12624.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12624.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12624.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0728; -. DR EnsemblBacteria; ABX12624; ABX12624; Nmar_0728. DR KEGG; nmr:Nmar_0728; -. DR BioCyc; NMAR436308:GI3J-754-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 187 AA; 22692 MW; A5D6474CA3ED4876 CRC64; MVHPVITEIF SNEENVILFF ERMSNQIKQK ERLEEFFKWH LEVISEVINE IDKTTKIDFS EKDESENWAK EFLRNYDEKI RTMRKNSNQI FERFHELKTE FDKIIPKENQ YGKESDEIMQ VFLNKEELLI GKIIFAYREL WFVANQINDS NFKIGSINDY QEWLKTNYSN LKSVKIILQQ IQHKILG // ID A9A4N8_NITMS Unreviewed; 1065 AA. AC A9A4N8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 58. DE SubName: Full=Isoleucyl-tRNA synthetase {ECO:0000313|EMBL:ABX13016.1}; GN OrderedLocusNames=Nmar_1120 {ECO:0000313|EMBL:ABX13016.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13016.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13016.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13016.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|RuleBase:RU363035}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13016.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N8; -. DR STRING; 436308.Nmar_1120; -. DR EnsemblBacteria; ABX13016; ABX13016; Nmar_1120. DR KEGG; nmr:Nmar_1120; -. DR eggNOG; arCOG00807; Archaea. DR eggNOG; COG0060; LUCA. DR HOGENOM; HOG000105277; -. DR KO; K01870; -. DR OMA; IWICEEC; -. DR BioCyc; NMAR436308:GI3J-1151-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004822; F:isoleucine-tRNA ligase activity; IEA:InterPro. DR GO; GO:0006428; P:isoleucyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR Gene3D; 3.90.740.10; -; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR002300; aa-tRNA-synth_Ia. DR InterPro; IPR002301; Ile-tRNA-ligase. DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit. DR Pfam; PF08264; Anticodon_1; 1. DR Pfam; PF00133; tRNA-synt_1; 1. DR PRINTS; PR00984; TRNASYNTHILE. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF50677; SSF50677; 1. DR TIGRFAMs; TIGR00392; ileS; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|RuleBase:RU363035, KW ECO:0000313|EMBL:ABX13016.1}; KW ATP-binding {ECO:0000256|RuleBase:RU363035}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|RuleBase:RU363035, ECO:0000313|EMBL:ABX13016.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363035}; KW Protein biosynthesis {ECO:0000256|RuleBase:RU363035}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 31 632 tRNA-synt_1. {ECO:0000259|Pfam:PF00133}. FT DOMAIN 689 837 Anticodon_1. {ECO:0000259|Pfam:PF08264}. SQ SEQUENCE 1065 AA; 123207 MW; AD79FCC1207E2004 CRC64; MELSTKFDAK AIESEIKEYV KSIDLEKQIF ASDKPEKIRF IEGPPTMNGI PHAGHLRGRV IKDLWYRYNT LQGKKIEFNG GWDTQGLPVE LQVEKELGVT GGKTEAIKQF GVERIVSECK KVVEKYNKTW VEVDELLGMS FNHDKAYWTF RDEFIEREWQ VLKKAHENGI LEEDFTVIAY CPSCQTSLSH AEVNQGYEEV KDPSLYYKVK LVDEDVFLIV WTTMPFTLVT DAMVGLQPEE DYAYVKVENE TWVVGKTRLE EFMTEVKIED YKIEKTVKGS EFEGKKYIHP LLDLIPELNE CSKADNFHVA VSESFVDAST GSGLVHLSPA NGEEDIKIAN KRKVKIFSPI DDEVKFTSQA GKYQGMFVRD ADRPIVEDLK ECNALVKIGK IKHKYPLCWR SHHPIVWLAR KGWFYKLDRL DNKAIDAAES VEYYFEQPKN RFLGIIKERH PWCISRERIW GCPLPVWACE ECNERNWFFT RKEIVESADN LPDGPDFELH RPWIDNITIK CKKCGSTKTK REEYVLDTWH NSGSAPYSSL TDEEYTNEIP APFFTEGIDQ TRGWAYTLLI ENVILNNGPT PPYKSFLFQG HVLDEKGGKM SKSKGNVLEG IELLEKYPAD LIRFYFMWKA SPIEPLSFST EELMSRPYQV INTLFNLHLY FKQNSQYDNF EKENTIEWAK QKNLLTSPDI WLLSKLQKLI SKITDRNDSC KFHEGAKAID DFIINNLSQI YIPITRGELW DEDEDKKERR LAIYAVLEEV LRTLDILIHP FCPFTSEHLY QTVFDGKQSI LLDKWPKSQE SLVNEEIEES FDIMKDVVSV SSAARMKGKL KRRWPLNEAK ICVKKGLKSK LESLSELLQS QLNVEKFSIA ETEKESGLEQ ILELKQLGLP AKPIVELERK RIGPKAKQHM GKLVAKFSET NPDEIISSLQ NNSKFDFDID DETISLDNED FVVDFDADEN YAMSKRDDYV VFISTSRNKE MMAKGLVKDV ARRLQTLRKE RGYNPTDVLG VASILDLDEE SLEMIKEKSE DLAFLVRVKQ VNFTESCKEY KDDDIDGQKI RISVE // ID A9A3G7_NITMS Unreviewed; 259 AA. AC A9A3G7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ABX12899.1}; GN OrderedLocusNames=Nmar_1003 {ECO:0000313|EMBL:ABX12899.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12899.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12899.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12899.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12899.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3G7; -. DR STRING; 436308.Nmar_1003; -. DR EnsemblBacteria; ABX12899; ABX12899; Nmar_1003. DR KEGG; nmr:Nmar_1003; -. DR eggNOG; arCOG08266; Archaea. DR eggNOG; COG3741; LUCA. DR HOGENOM; HOG000244881; -. DR KO; K01479; -. DR OMA; AFDCHSM; -. DR BioCyc; NMAR436308:GI3J-1031-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008745; F:N-acetylmuramoyl-L-alanine amidase activity; IEA:InterPro. DR GO; GO:0009253; P:peptidoglycan catabolic process; IEA:InterPro. DR Gene3D; 3.40.630.40; -; 1. DR InterPro; IPR002508; CW_Hdrlase/autolysin_cat. DR InterPro; IPR007709; N-FG_amidohydro. DR Pfam; PF05013; FGase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12899.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 259 AA; 29547 MW; 4720917FB5CC087B CRC64; MKKFPVLLSI PHGGLKKPAE LDGHLTITNK DLFDDADPFV IELYDLGDKV QRVIKTDIAR AFVDLNRSLQ DMPPDNPDGL IKSMTCYEKP IYIKGKEPNE SLRDLLVEFY YMPYHRALQK SFSELDLQLC LDCHSMASVA PGISPDGANK KRPLFCLSNQ DGKTCSDEML ELLADCISSS YSIDRKEISL NDPFHGGHIT KTYGNNPLPW IQIEMNRSLY LSPPWFDQES LSVENTHLQK LNKQFENSLE LFFSEIRTL // ID A9A4Q2_NITMS Unreviewed; 107 AA. AC A9A4Q2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13030.1}; GN OrderedLocusNames=Nmar_1134 {ECO:0000313|EMBL:ABX13030.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13030.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13030.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13030.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13030.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13030; ABX13030; Nmar_1134. DR KEGG; nmr:Nmar_1134; -. DR BioCyc; NMAR436308:GI3J-1166-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 107 AA; 12061 MW; 6D6807880DB5EEAC CRC64; MMTPVTVYSD SHVQTEMTFE QIMAIDVHEN SVVVYAQTEI PVVCEVEYAL NGDGFSNSMI VSHDSVPHTG HIVKIPELLL NTEYEYRYIG EISEEKITSE ISSFTTI // ID A9A3B1_NITMS Unreviewed; 77 AA. AC A9A3B1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=DNA-binding protein {ECO:0000313|EMBL:ABX12540.1}; GN OrderedLocusNames=Nmar_0644 {ECO:0000313|EMBL:ABX12540.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12540.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12540.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12540.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12540.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3B1; -. DR STRING; 436308.Nmar_0644; -. DR EnsemblBacteria; ABX12540; ABX12540; Nmar_0644. DR KEGG; nmr:Nmar_0644; -. DR eggNOG; arCOG01753; Archaea. DR eggNOG; COG1581; LUCA. DR HOGENOM; HOG000105803; -. DR KO; K03622; -. DR OMA; TMEIDIS; -. DR BioCyc; NMAR436308:GI3J-669-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR Gene3D; 3.30.110.20; -; 1. DR InterPro; IPR002775; DNA/RNA-bd_Alba-like. DR Pfam; PF01918; Alba; 1. DR SUPFAM; SSF82704; SSF82704; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000313|EMBL:ABX12540.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 77 AA; 8555 MW; 873D61D060A2B06A CRC64; MTYVSATLTQ LSTRQTVTIK ARGKRITQAV DVSQMIVKRM DSVGYVISDV RISSDSLTSQ DGKQRNVSTM EIDISKE // ID A9A244_NITMS Unreviewed; 237 AA. AC A9A244; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Major intrinsic protein {ECO:0000313|EMBL:ABX12457.1}; GN OrderedLocusNames=Nmar_0561 {ECO:0000313|EMBL:ABX12457.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12457.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12457.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12457.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12457.1; -; Genomic_DNA. DR ProteinModelPortal; A9A244; -. DR STRING; 436308.Nmar_0561; -. DR EnsemblBacteria; ABX12457; ABX12457; Nmar_0561. DR KEGG; nmr:Nmar_0561; -. DR eggNOG; arCOG04431; Archaea. DR eggNOG; COG0580; LUCA. DR HOGENOM; HOG000288286; -. DR KO; K06188; -. DR OMA; VRWERIN; -. DR BioCyc; NMAR436308:GI3J-583-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR Gene3D; 1.20.1080.10; -; 1. DR InterPro; IPR023271; Aquaporin-like. DR InterPro; IPR000425; MIP. DR PANTHER; PTHR19139; PTHR19139; 1. DR Pfam; PF00230; MIP; 1. DR PRINTS; PR00783; MINTRINSICP. DR SUPFAM; SSF81338; SSF81338; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 60 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 81 108 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 128 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 188 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 208 230 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 237 AA; 24855 MW; 5C5EC90C05F5E1FC CRC64; MVSPRNWLAE AIATFALVFF GPLSVILAAA VFGDGLTIEG IIMISLGHGA AIAFMVYAFG HVSGAHINPA VTIPMMITKK IGIADGIGYI VFQIIGAIIA TGTLIALFPE IGKPVFWGAH GGPSELLGGS LMSGLVLEMI MTFFLVVVIF MTAVHKKAPK SVYGAVIGGM VFLLHLVGVP LTGASMNPAR SLSPTLLSGD AGLWEVQWLY WVGPIVGGII AGLIMNYIYV NKAEKEA // ID A9A2N4_NITMS Unreviewed; 505 AA. AC A9A2N4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13273.1}; GN OrderedLocusNames=Nmar_1377 {ECO:0000313|EMBL:ABX13273.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13273.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13273.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13273.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13273.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1377; -. DR EnsemblBacteria; ABX13273; ABX13273; Nmar_1377. DR KEGG; nmr:Nmar_1377; -. DR eggNOG; arCOG01245; Archaea. DR eggNOG; COG0582; LUCA. DR HOGENOM; HOG000105426; -. DR OMA; DSHELRD; -. DR BioCyc; NMAR436308:GI3J-1411-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 301 435 Phage_integrase. FT {ECO:0000259|Pfam:PF00589}. SQ SEQUENCE 505 AA; 58905 MW; E58DF0A1A343FF31 CRC64; MLKVYQVLKK FDSKKDYGFD IRPQYARCLA VMKKGERIDS KAFAKEHKNE FTQRRNTVEA TLAVVYKAIS IGKKIGVLKE IPNDSVPILY DDFCKLETVS YFRSQLRGSN RKNIKSVTDG TKDTYTRHLH YFNNWIFGKT LEYTAEVQTS KDSYKKVTKK VTLKGVEPFL KIFSESHFDK KPFVKLIKRY FLESDVKLKS KSMRNNSFFA INEYFKKNDE PIGLSFDPNA GIQHDDNDSE QIMTLDEFLT ILTIGKPSLT ERAVFLCKFQ RGLDSSTLVD RFNFEVWSKL VESFGTEDYK KWDLKKCPIL IELTRVKTNV SHFGFLDRDA VSAIIDYLPY RKKITGQEMS NKSALFLNNF QKPIKETWIT KSFERMRKNS GLDEILNSKS VGNGSRKKYR ITPHETRDLL KSVLIDSDVR YDLAEEFIGH KTKDSYEKQA HLFTATLRKE YIKASGRLNI FSKFKEISKG ASSNEDLEAK IEEMRLKMQK MDKKISRTSK LRRKK // ID A9A1D6_NITMS Unreviewed; 362 AA. AC A9A1D6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=Phosphonate ABC transporter, periplasmic phosphonate-binding protein {ECO:0000313|EMBL:ABX12771.1}; GN OrderedLocusNames=Nmar_0875 {ECO:0000313|EMBL:ABX12771.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12771.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12771.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12771.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12771.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1D6; -. DR STRING; 436308.Nmar_0875; -. DR EnsemblBacteria; ABX12771; ABX12771; Nmar_0875. DR KEGG; nmr:Nmar_0875; -. DR eggNOG; arCOG01805; Archaea. DR eggNOG; COG3221; LUCA. DR HOGENOM; HOG000108346; -. DR KO; K02044; -. DR OMA; SDIAPAK; -. DR BioCyc; NMAR436308:GI3J-903-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:InterPro. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR005770; PhnD. DR TIGRFAMs; TIGR01098; 3A0109s03R; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 362 AA; 39027 MW; 31892D5550F78B94 CRC64; MKQRTTMAVI VAFVAIGIAT IPLSQTAQAQ SSLPDWIKTN AGWWAEGAVD DATFLNGIEY LIENGIINVS SDSKSVDVDT LTIGFIPVEK ADELTPKAEA LEQFLESELG VDVELVIPTN YEAIIEGMRF GHIDGAFMDT GPAWITHERT GAEAVLAELV KGKVNYQATV WTLAENDSLQ SIEDTVGKKV AFTSMTGSSG FVRPMGTLVT EGHVTIEGDD IVALESALAN NFESYTFAGG YKAALTLLLE GKVDVAFGSD IAPAKYLELE DQKKLRPVTT IGPVPSHVFM VSADMSDSTK NALVDSLIKL NYDENNAILT DLYGAEALVP TTTTMHIGEF GEFINALTGL DQKILDKYDK SK // ID A9A3F3_NITMS Unreviewed; 130 AA. AC A9A3F3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12885.1}; GN OrderedLocusNames=Nmar_0989 {ECO:0000313|EMBL:ABX12885.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12885.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12885.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12885.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12885.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0989; -. DR EnsemblBacteria; ABX12885; ABX12885; Nmar_0989. DR KEGG; nmr:Nmar_0989; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000108612; -. DR OMA; VRMRHEF; -. DR BioCyc; NMAR436308:GI3J-1017-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 130 AA; 15053 MW; DE98C4444C6F2197 CRC64; MGNIEELEKL CKKITKLDPK MRSARLINSR GHLMAGGMKE GLLSLEAQKQ DEMMFMELAL RVRMRHEFDK EFGVVHFSMS YRDKVIVMSF PLSNDDVLLV SCEKDINFGK IPFKILKLIE PLKNSPMKTF // ID A9A4F2_NITMS Unreviewed; 96 AA. AC A9A4F2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12641.1}; GN OrderedLocusNames=Nmar_0745 {ECO:0000313|EMBL:ABX12641.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12641.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12641.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12641.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12641.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0745; -. DR EnsemblBacteria; ABX12641; ABX12641; Nmar_0745. DR KEGG; nmr:Nmar_0745; -. DR eggNOG; arCOG10539; Archaea. DR eggNOG; ENOG4110ZQJ; LUCA. DR BioCyc; NMAR436308:GI3J-771-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 96 AA; 10932 MW; 88B07674618AC765 CRC64; MGDGIGGAVI NILTNNAFEL LISHTRKDNQ EEYGKVEKII MSKIDNPDQP QYEEKTKEDL ERALKGKFVS CNVQYRDKKT DALICNVFVQ RPPEGF // ID A9A2G7_NITMS Unreviewed; 227 AA. AC A9A2G7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Glutamine amidotransferase class-I {ECO:0000313|EMBL:ABX13206.1}; GN OrderedLocusNames=Nmar_1310 {ECO:0000313|EMBL:ABX13206.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13206.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13206.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13206.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13206.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G7; -. DR STRING; 436308.Nmar_1310; -. DR EnsemblBacteria; ABX13206; ABX13206; Nmar_1310. DR KEGG; nmr:Nmar_1310; -. DR eggNOG; arCOG00090; Archaea. DR eggNOG; COG0518; LUCA. DR HOGENOM; HOG000238441; -. DR OMA; GGPWFQW; -. DR BioCyc; NMAR436308:GI3J-1343-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.880; -; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR Pfam; PF00117; GATase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000313|EMBL:ABX13206.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13206.1}. FT DOMAIN 4 190 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. SQ SEQUENCE 227 AA; 25738 MW; 0C455F0813B2AD92 CRC64; MSDVLLVQNT RIEGSGYLGD LLKKDGFDIT SVNAKHEKLP DKDFSLVVIL GAPESANDDL PYLRDEQQLI KNSVEKNIPV LGICLGSQLI AKTFGGKVYS GLKKEIGFYN DLQVSYNSGL FSGFQNPFTV FHWHGDTFDL PEGAINLASS EHYQNQAFRY KSAVGLQFHL EVNEEMVNLW LDNTEEKLQK IPYIDPKKIR SDIDENISTV KSNMKNFYNN FKSEFQL // ID A9A421_NITMS Unreviewed; 258 AA. AC A9A421; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABX12205.1}; GN OrderedLocusNames=Nmar_0309 {ECO:0000313|EMBL:ABX12205.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12205.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12205.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12205.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12205.1; -; Genomic_DNA. DR ProteinModelPortal; A9A421; -. DR STRING; 436308.Nmar_0309; -. DR EnsemblBacteria; ABX12205; ABX12205; Nmar_0309. DR KEGG; nmr:Nmar_0309; -. DR eggNOG; arCOG00845; Archaea. DR eggNOG; COG0454; LUCA. DR OMA; DRENILQ; -. DR BioCyc; NMAR436308:GI3J-323-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008080; F:N-acetyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR000182; GNAT_dom. DR Pfam; PF00583; Acetyltransf_1; 1. DR SUPFAM; SSF55729; SSF55729; 1. DR PROSITE; PS51186; GNAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12205.1}. FT DOMAIN 1 145 N-acetyltransferase. FT {ECO:0000259|PROSITE:PS51186}. SQ SEQUENCE 258 AA; 30224 MW; 8B9BEA05F14B7106 CRC64; MIRNAKPSDK SQVLKFCQNT FSWGDYVEHV WDYWLNEDLL FVYEKQFPVG ICHAFFSKNQ IWIEGIRVDS NFRKQKIASE LVSHVESIGQ KNNALFSFML IDVENSISLS MAKSLKYQLL EIWNFYSLEP KKNSNFDIIF AKSLDASLYP HYVKSWRWLP IDNTIVSELV QQNKIIQSQI NGEVSTAILS DSEHFDNTLI VTLFSGSEKT SLQIILFLQN YAIENNYNRI QILSTEKLFD LEFLDHKLSF HLLRKTLD // ID A9A5T9_NITMS Unreviewed; 398 AA. AC A9A5T9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=tRNA pseudouridine synthase D TruD {ECO:0000313|EMBL:ABX13094.1}; GN OrderedLocusNames=Nmar_1198 {ECO:0000313|EMBL:ABX13094.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13094.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13094.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13094.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13094.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5T9; -. DR STRING; 436308.Nmar_1198; -. DR EnsemblBacteria; ABX13094; ABX13094; Nmar_1198. DR KEGG; nmr:Nmar_1198; -. DR eggNOG; arCOG04252; Archaea. DR eggNOG; COG0585; LUCA. DR HOGENOM; HOG000106610; -. DR KO; K06176; -. DR OMA; NWNGSFI; -. DR BioCyc; NMAR436308:GI3J-1231-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR001656; PsdUridine_synth_TruD. DR InterPro; IPR020119; PsdUridine_synth_TruD_CS. DR InterPro; IPR011760; PsdUridine_synth_TruD_insert. DR PANTHER; PTHR13326; PTHR13326; 1. DR Pfam; PF01142; TruD; 1. DR SUPFAM; SSF55120; SSF55120; 2. DR TIGRFAMs; TIGR00094; tRNA_TruD_broad; 1. DR PROSITE; PS50984; TRUD; 1. DR PROSITE; PS01268; UPF0024; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 153 359 TRUD. {ECO:0000259|PROSITE:PS50984}. SQ SEQUENCE 398 AA; 45813 MW; E6FAB186A90A3651 CRC64; MIPDLDSKIG ISVYSTKFDG IGGKIRTTPE DFEVSEKILE KTLNSINQEE GYAVYKLKKK RIDTNHALSD IFRKKGLRLK SLGLKDASAI TEQFVCSGNK GKSIEDYSTE KYSLKKIGFV KKPLSKKDMI GNHFKIKISD CTNKLSSFEE FNNVLNFYGY QRFGSKRPVT HLIGKAILQR DFDKAVELVL SFTSDYDSKE NNEIRQKLVD KQNYNQYFEK IPKQMDIERI VLKEMIEHDD AFRAIRAIPV SLRRFYIQAY QSFIFNKSLS TAFTDGENMF ESESGDVCFD FNGIIGKFVK GLDQKLAIPF VGYSYYKKTR FDYHISQIMQ QEEITPKDFF IKEMQEVSSE GGFRQAAIDC SDYSSRDDVV EFTLSRGSFA TILLREIMKP SDPIYAGF // ID A9A524_NITMS Unreviewed; 86 AA. AC A9A524; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11933.1}; GN OrderedLocusNames=Nmar_0033 {ECO:0000313|EMBL:ABX11933.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11933.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11933.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11933.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11933.1; -; Genomic_DNA. DR ProteinModelPortal; A9A524; -. DR STRING; 436308.Nmar_0033; -. DR EnsemblBacteria; ABX11933; ABX11933; Nmar_0033. DR KEGG; nmr:Nmar_0033; -. DR eggNOG; arCOG01055; Archaea. DR eggNOG; COG3432; LUCA. DR HOGENOM; HOG000110509; -. DR OMA; MGIMGDI; -. DR BioCyc; NMAR436308:GI3J-33-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 86 AA; 9694 MW; 5C78A94736BA8D72 CRC64; MGIMGDILNV TADGGREGII VSAISRKANL SHYAVLDKCE KLVEAGLVES VKNDRNRVFQ ITEKGLQFFQ EFKRFQGLVE SMNLRY // ID A9A4Q9_NITMS Unreviewed; 200 AA. AC A9A4Q9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13037.1}; GN OrderedLocusNames=Nmar_1141 {ECO:0000313|EMBL:ABX13037.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13037.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13037.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13037.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13037.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1141; -. DR EnsemblBacteria; ABX13037; ABX13037; Nmar_1141. DR KEGG; nmr:Nmar_1141; -. DR eggNOG; ENOG4102U9T; Archaea. DR eggNOG; ENOG4110ZK0; LUCA. DR BioCyc; NMAR436308:GI3J-1173-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 200 AA; 23461 MW; 1DB2F9447CF3ED50 CRC64; MANQTLWIGI TVGVFLVGLL VGLGISANSM MTGNMPMQNQ MMNDPQLMNQ WMGNMMNDPE TMNEIHDMML NDPQHMEMMM GPMMDRMMND PQMRPQMMDM MMQNQNMMKS MMDNDQMMNS DMMGQGMMMN QEMMMQMMQD PETREEMIQI MSKHVSEMQE LLSSDLTDDE FNMKMTELMQ SHMDEMQVLM SNHPMMQSMN // ID A9A3R9_NITMS Unreviewed; 320 AA. AC A9A3R9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13331.1}; GN OrderedLocusNames=Nmar_1435 {ECO:0000313|EMBL:ABX13331.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13331.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13331.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13331.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13331.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1435; -. DR EnsemblBacteria; ABX13331; ABX13331; Nmar_1435. DR KEGG; nmr:Nmar_1435; -. DR BioCyc; NMAR436308:GI3J-1470-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 5 23 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 320 AA; 37911 MW; 8BC9B77A27A24C02 CRC64; MRLEVGIIVV VGIFVSISLG LIISNPDATP KSVSFAKYSD ELYQINQLSN KYYVMEDMQK FEESKKQMQE ILREIFYDYL ELEISNVELI EGQYPFRDSS AWVEKFDLDP DSVCNFEKQI PLHMQLITQT ENYERFAKKY SHYNLTLSIL DERSYMSNVH YGLIAENDKN QSASTYFHID SCNNERTDKE LLFLSCFDEN THYRYATFNY DDIVSSYSNS HFCKAELDPW RQSVYEYGQK LTEERRAFEM EHMMNIENHE EQLEVFAEMN KQGDLGNIVW SIVHGKFDDQ KTQDMIKQYE KQHGSLPDEL LELIENRNEN // ID A9A1U2_NITMS Unreviewed; 323 AA. AC A9A1U2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 39. DE SubName: Full=Transcriptional regulator, RpiR family {ECO:0000313|EMBL:ABX12063.1}; DE EC=5.3.1.8 {ECO:0000313|EMBL:ABX12063.1}; GN OrderedLocusNames=Nmar_0167 {ECO:0000313|EMBL:ABX12063.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12063.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12063.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12063.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12063.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U2; -. DR STRING; 436308.Nmar_0167; -. DR EnsemblBacteria; ABX12063; ABX12063; Nmar_0167. DR KEGG; nmr:Nmar_0167; -. DR eggNOG; arCOG00052; Archaea. DR eggNOG; COG0166; LUCA. DR HOGENOM; HOG000106786; -. DR KO; K15916; -. DR OMA; PELNHNE; -. DR BioCyc; NMAR436308:GI3J-168-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro. DR GO; GO:0004347; F:glucose-6-phosphate isomerase activity; IEA:InterPro. DR GO; GO:0004476; F:mannose-6-phosphate isomerase activity; IEA:UniProtKB-EC. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR InterPro; IPR019490; Glu6P/Mann6P_isomerase_C. DR InterPro; IPR001347; SIS. DR Pfam; PF10432; bact-PGI_C; 1. DR Pfam; PF01380; SIS; 1. DR PROSITE; PS51464; SIS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12063.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 21 159 SIS. {ECO:0000259|PROSITE:PS51464}. SQ SEQUENCE 323 AA; 36668 MW; 33289D0F6C463455 CRC64; MCEVYDKWPE LARKAFFQPT EKIDFKDINE IIFSGMGGSG SIGDGFSSIF SKTNLNVSTI KGFHLPESIN PKTLVIPISV SGNTIETHTV LKQAKKRGCK IIAFSSGGKI EKFCNNNKIE YRQIPIVHSP RASFVSFFYS ILNTLEPMIP LKQNIILKSI NDLEQLSKNI ASHKLDKKNK SLELAKWINN IPIIYYPNGF KAAAIRFKNS LQENAKLHAM SEDIIEMSHN GIVSWEKTSS IQPILLEGKD DYIKTKKLQK IVKEYFKKNH IQYNVISSPT GSILTKLVYL IYLLDYSSIY KAIIEKIDPS PVKSIEFLKK KIN // ID A9A4B9_NITMS Unreviewed; 113 AA. AC A9A4B9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12608.1}; GN OrderedLocusNames=Nmar_0712 {ECO:0000313|EMBL:ABX12608.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12608.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12608.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12608.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12608.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0712; -. DR EnsemblBacteria; ABX12608; ABX12608; Nmar_0712. DR KEGG; nmr:Nmar_0712; -. DR eggNOG; arCOG08660; Archaea. DR eggNOG; ENOG41110J7; LUCA. DR HOGENOM; HOG000105716; -. DR OMA; MSDMRFI; -. DR BioCyc; NMAR436308:GI3J-738-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 64 81 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 113 AA; 12329 MW; A904BBF628937C0C CRC64; MSDMRFILIG IGLTFAGFIV LGVFGEQYQA ATFEENEFGT CYEYFEDKPP QEINCSFKVM DQTVFFALVI GLLGAGAIAL VKGARGDWDS KVKPEDVVGP GSSQNEDSEG KQD // ID A9A2T6_NITMS Unreviewed; 326 AA. AC A9A2T6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Phosphate uptake regulator, PhoU {ECO:0000313|EMBL:ABX13613.1}; GN OrderedLocusNames=Nmar_1717 {ECO:0000313|EMBL:ABX13613.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13613.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13613.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13613.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13613.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1717; -. DR EnsemblBacteria; ABX13613; ABX13613; Nmar_1717. DR KEGG; nmr:Nmar_1717; -. DR eggNOG; arCOG00318; Archaea. DR eggNOG; COG0704; LUCA. DR HOGENOM; HOG000109258; -. DR OMA; QYFLLVR; -. DR BioCyc; NMAR436308:GI3J-1762-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR026022; PhoU_dom. DR Pfam; PF01895; PhoU; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 138 227 PhoU. {ECO:0000259|Pfam:PF01895}. SQ SEQUENCE 326 AA; 37181 MW; 471DA8EC2BF97F0A CRC64; MTKFVRRLQR IGSSILVSLP KEWVDANKLD KSSQVELETG QDNISISANK ETRPTKELVI SYPLPKEENI VADITGGYLL GYDIIEITSD SIIPGEDREK IRNSMRRLVG MEIIEEDASH INMQFLLDST TLNPQKILKR MSSIAIGMYD DATNGLIADD KSNLQTLSKR DEEVNRQYFL LVRLIRSTLV DKRLANAFNL ENIDVLDYRV AANLLENTGD SIVELSDFIY NSSLSKDQYK KIHDVVKNFN QLAEKSIDAF TKPDRLLAIE AISLHKKFED QLSKLRTSLG TKKEIPIDFL DMVFMFERIA QSWADVADLV QPIYNK // ID A9A4P2_NITMS Unreviewed; 305 AA. AC A9A4P2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=CoA-binding domain protein {ECO:0000313|EMBL:ABX13020.1}; GN OrderedLocusNames=Nmar_1124 {ECO:0000313|EMBL:ABX13020.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13020.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13020.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13020.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13020.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4P2; -. DR STRING; 436308.Nmar_1124; -. DR EnsemblBacteria; ABX13020; ABX13020; Nmar_1124. DR KEGG; nmr:Nmar_1124; -. DR eggNOG; arCOG01339; Archaea. DR eggNOG; COG0074; LUCA. DR HOGENOM; HOG000239685; -. DR KO; K01902; -. DR OMA; FEQDPQT; -. DR BioCyc; NMAR436308:GI3J-1155-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0048037; F:cofactor binding; IEA:InterPro. DR Gene3D; 3.40.50.261; -; 1. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR017440; Cit_synth/succinyl-CoA_lig_AS. DR InterPro; IPR003781; CoA-bd. DR InterPro; IPR005810; CoA_lig_alpha. DR InterPro; IPR005811; CoA_ligase. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR016102; Succinyl-CoA_synth-like. DR Pfam; PF02629; CoA_binding; 1. DR Pfam; PF00549; Ligase_CoA; 1. DR PIRSF; PIRSF001553; SucCS_alpha; 1. DR PRINTS; PR01798; SCOASYNTHASE. DR SMART; SM00881; CoA_binding; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF52210; SSF52210; 1. DR PROSITE; PS00399; SUCCINYL_COA_LIG_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 16 112 CoA_binding. {ECO:0000259|SMART:SM00881}. FT ACT_SITE 260 260 Tele-phosphohistidine intermediate. FT {ECO:0000256|PIRSR:PIRSR001553-1}. SQ SEQUENCE 305 AA; 32015 MW; 112431605BD00812 CRC64; MTDIFGLLKG NPGDSDYEKK GVIVQGITGA YGSLHARNMI AYGTNVVAGV TPGKGGQKFD DKVPIYNSMQ EAVDATNAKI SIVFVPAKFF LSAAKDALEA GIKLLVAIPE HVPVRDTMET LELAKQKGAV VIGPNTPGIM IPELIKIGIM PPMPFKAGKI AVLSKSGTLL YEISDALTNA GFGQSITIGI GGDPVNGTRL IDAFDMVKDI PDLEGMVVVG EIGGDSEEML AQRIIDSGFN KPTVAYIAGR AAPKEKRMGH AGAIVMGTYG SAESKVSMFN KANIPVAKRP AEVPVLLAGK MEKSD // ID A9A577_NITMS Unreviewed; 357 AA. AC A9A577; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12276.1}; GN OrderedLocusNames=Nmar_0380 {ECO:0000313|EMBL:ABX12276.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12276.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12276.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12276.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12276.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0380; -. DR EnsemblBacteria; ABX12276; ABX12276; Nmar_0380. DR KEGG; nmr:Nmar_0380; -. DR eggNOG; arCOG10517; Archaea. DR eggNOG; ENOG4110ZZC; LUCA. DR OMA; MATEYLQ; -. DR BioCyc; NMAR436308:GI3J-396-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 53 74 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 86 103 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 123 141 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 153 174 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 194 214 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 221 240 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 246 267 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 287 309 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 329 348 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 357 AA; 39889 MW; DE6F0A318463AF27 CRC64; MATEYLQKSQ VKFPAIVFLV ALSGTTLAMW GASWDITSHL LREPETFFTP SHGILYLGVG ISVISAIMSS VVYLRRKELR TESFAMGLKL IIIGSMIQVA AGPGDFYWHE LFGLDGLLSP THITLALGIL TTLVGSVIGF SRINFHLEEK NSFFKIILPI TYGIFWFSIM WLIFFFVLPI SEGETHNFNP DPNVAIVLSF ILIPFAYSLI FWTSSKTQKR FGATSGAALT FIVMNISSNI FTSEDIMSYL PWFAAPMISA IVADYIFNKK WKSKILQKHS GKIAGAILGS MFFAFSFPML SMTFLEIYLH NDIFPYDVLP TSSDVVFKHW MMSVPGGIVS GIVGMILAPK ILRFNSE // ID A9A626_NITMS Unreviewed; 443 AA. AC A9A626; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 60. DE SubName: Full=Aldehyde dehydrogenase {ECO:0000313|EMBL:ABX13504.1}; GN OrderedLocusNames=Nmar_1608 {ECO:0000313|EMBL:ABX13504.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13504.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13504.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13504.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the aldehyde dehydrogenase family. CC {ECO:0000256|RuleBase:RU003345}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13504.1; -; Genomic_DNA. DR ProteinModelPortal; A9A626; -. DR STRING; 436308.Nmar_1608; -. DR EnsemblBacteria; ABX13504; ABX13504; Nmar_1608. DR KEGG; nmr:Nmar_1608; -. DR eggNOG; arCOG01252; Archaea. DR eggNOG; COG1012; LUCA. DR HOGENOM; HOG000271513; -. DR KO; K18601; -. DR OMA; EFTNAQT; -. DR BioCyc; NMAR436308:GI3J-1652-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016620; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; IEA:InterPro. DR Gene3D; 3.40.309.10; -; 1. DR Gene3D; 3.40.605.10; -; 1. DR InterPro; IPR016161; Ald_DH/histidinol_DH. DR InterPro; IPR016163; Ald_DH_C. DR InterPro; IPR016160; Ald_DH_CS_CYS. DR InterPro; IPR016162; Ald_DH_N. DR InterPro; IPR015590; Aldehyde_DH_dom. DR Pfam; PF00171; Aldedh; 1. DR SUPFAM; SSF53720; SSF53720; 1. DR PROSITE; PS00070; ALDEHYDE_DEHYDR_CYS; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000256|RuleBase:RU003344}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 430 Aldedh. {ECO:0000259|Pfam:PF00171}. SQ SEQUENCE 443 AA; 48700 MW; 90DB763FB3CAA66A CRC64; MDKDQVFELV RKAKRAFPEW KKDYEKRRSY IYNLVEHLKK NKTELAKIAT KEMGKALKES IGEVEKCAWA LEFYADHGDS FLSDEVLNTD ARKSFLTFEP LGVIGSIMPW NFPYWQALRF AAPCLMAGNV IVMKPSRVTM QSGIEIEKAF ADAGIPDGVF STVVGSVDSA NHLIDSEVNA VTFTGSTNAG AKVGERAAMN LKKCVLELGG SDPFIVLDDA IIEKAADGAA KGRFINCGQS CVASKRFFVG KNIAEDFIEL FIKKASELKV GDPMSIETDI GPLSSKDGLE TISGIVEDAK AKGAEVLLGG EEMDGNGYFY KPTILTNITP DMRIAKEETF GPVAPITIVE NESDAIKMAN DSEFGLGASI WTKDLAKADK MSRRIESGIV SVNNVVISDP RIPFGGIKHS GFGRELSRYG MLEFVNLKSV RFYDNLTHHH YVE // ID A9A3F4_NITMS Unreviewed; 192 AA. AC A9A3F4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12886.1}; GN OrderedLocusNames=Nmar_0990 {ECO:0000313|EMBL:ABX12886.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12886.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12886.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12886.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12886.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0990; -. DR EnsemblBacteria; ABX12886; ABX12886; Nmar_0990. DR KEGG; nmr:Nmar_0990; -. DR eggNOG; arCOG06343; Archaea. DR eggNOG; ENOG411108E; LUCA. DR HOGENOM; HOG000108601; -. DR OMA; DIFDNDF; -. DR BioCyc; NMAR436308:GI3J-1018-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR010123; PHA_synth_III_E. DR Pfam; PF09712; PHA_synth_III_E; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 161 192 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 192 AA; 22469 MW; 38E3D13C4605733C CRC64; MQSESGKDIT DYYKHLSLFW TDIVHLMSSK PQALASIGPM RAFAANSKKI STELIEINED LMEFNKHLTE YYKQLTDTWI DSQKKVNLKA PEIPQDIEQI EAVKRIWIDI FDNDFTELFD SEKFGENYGK LVSKELELTK HWNNIANVVL QSVNLPSKEE IDEVYKEMHS LKKRVAKLEL ELKKKEMKNN AK // ID A9A4H9_NITMS Unreviewed; 276 AA. AC A9A4H9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12957.1}; GN OrderedLocusNames=Nmar_1061 {ECO:0000313|EMBL:ABX12957.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12957.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12957.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12957.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12957.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1061; -. DR EnsemblBacteria; ABX12957; ABX12957; Nmar_1061. DR KEGG; nmr:Nmar_1061; -. DR eggNOG; arCOG01995; Archaea. DR eggNOG; ENOG4111V8Y; LUCA. DR BioCyc; NMAR436308:GI3J-1092-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 9 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 116 134 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 146 168 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 276 AA; 30668 MW; 5D8BBAA9425E4B83 CRC64; MTFMNIKRVV WFFVFMGIYS LIFQIGSMSE PTREEVEVFM EEFENVTEDI DAIGLFVHNT TLSLPMFIPG IGVAWGLFSA WSTGYAFANI AAITPGLAET PAFSILYYSP YGFMEIVAYS LGISRGFILI VGIIKKNNLK SLLKPTGAEI AIVIGLLLAG GFLEHYMIES EGSNPEISKE DEPVTYSSEL PKACDGVTSV ETQLHPTGEE CVKLLNEQIF VYCLSENNED ESIAQGCRAK ALMQMDQNCK GNEQSPYNTC MMTELKQAYQ NMVPNQ // ID A9A117_NITMS Unreviewed; 176 AA. AC A9A117; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:ABX11978.1}; GN OrderedLocusNames=Nmar_0078 {ECO:0000313|EMBL:ABX11978.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11978.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11978.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11978.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11978.1; -; Genomic_DNA. DR ProteinModelPortal; A9A117; -. DR STRING; 436308.Nmar_0078; -. DR EnsemblBacteria; ABX11978; ABX11978; Nmar_0078. DR KEGG; nmr:Nmar_0078; -. DR eggNOG; arCOG04678; Archaea. DR eggNOG; COG2109; LUCA. DR HOGENOM; HOG000260310; -. DR KO; K19221; -. DR OMA; LVTEMTL; -. DR BioCyc; NMAR436308:GI3J-79-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0008817; F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003724; CblAdoTrfase_CobA. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF02572; CobA_CobO_BtuR; 1. DR PIRSF; PIRSF015617; Adensltrnsf_CobA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00708; cobA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11978.1}. SQ SEQUENCE 176 AA; 19462 MW; FF59B5930A9D0B89 CRC64; MSDGLTIVYT GKGKGKTTAA LGLALRATGY NKKICMIQFI KGSWHYGEMD STKKLEPGFE MVAIGKGFVG IVDDKSPKED HEKVAKEAIR ISNEKIQSGK YDIVILDEIN YAVNLNLISV DNVLNLIKSK PDNIDLVLTG NYAKEEVIEI ADLVTEMKEI KHPFQKGIKA KKGIDF // ID A9A4P0_NITMS Unreviewed; 109 AA. AC A9A4P0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13018.1}; GN OrderedLocusNames=Nmar_1122 {ECO:0000313|EMBL:ABX13018.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13018.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13018.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13018.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13018.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1122; -. DR EnsemblBacteria; ABX13018; ABX13018; Nmar_1122. DR KEGG; nmr:Nmar_1122; -. DR eggNOG; arCOG08645; Archaea. DR eggNOG; ENOG411110G; LUCA. DR HOGENOM; HOG000105266; -. DR OMA; CYEETIC; -. DR BioCyc; NMAR436308:GI3J-1153-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 109 AA; 12867 MW; 90E8805AB26C411C CRC64; MVKQISLDAW QIQHLADLLE KGSKIVEKTN RPIVLYRQTL EEEDESYEEI VCTLTKGYVI EQMVTSGGVL VPSFHQQFVF TIEEYPQELL RKSKDRFLEM IDFLDEQLR // ID A9A261_NITMS Unreviewed; 529 AA. AC A9A261; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; DE EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177}; DE AltName: Full=Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; GN Name=lysS {ECO:0000256|HAMAP-Rule:MF_00177}; GN OrderedLocusNames=Nmar_0578 {ECO:0000313|EMBL:ABX12474.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12474.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12474.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12474.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate CC + L-lysyl-tRNA(Lys). {ECO:0000256|HAMAP-Rule:MF_00177}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00177}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|HAMAP-Rule:MF_00177}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12474.1; -; Genomic_DNA. DR ProteinModelPortal; A9A261; -. DR STRING; 436308.Nmar_0578; -. DR EnsemblBacteria; ABX12474; ABX12474; Nmar_0578. DR KEGG; nmr:Nmar_0578; -. DR eggNOG; arCOG00485; Archaea. DR eggNOG; COG1384; LUCA. DR HOGENOM; HOG000023853; -. DR KO; K04566; -. DR OMA; HNNAMLR; -. DR BioCyc; NMAR436308:GI3J-601-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004824; F:lysine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR GO; GO:0006430; P:lysyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.350; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR HAMAP; MF_00177; Lys_tRNA_synth_class1; 1. DR InterPro; IPR008925; aa-tRNA-synth_I_codon-bd. DR InterPro; IPR020751; aa-tRNA-synth_I_codon-bd_sub2. DR InterPro; IPR002904; Lys-tRNA-ligase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR SUPFAM; SSF48163; SSF48163; 1. DR TIGRFAMs; TIGR00467; lysS_arch; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177, KW ECO:0000313|EMBL:ABX12474.1}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00177}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00177}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00177, ECO:0000313|EMBL:ABX12474.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00177}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00177}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT MOTIF 42 50 "HIGH" region. {ECO:0000256|HAMAP- FT Rule:MF_00177}. FT MOTIF 298 302 "KMSKS" region. {ECO:0000256|HAMAP- FT Rule:MF_00177}. FT BINDING 301 301 ATP. {ECO:0000256|HAMAP-Rule:MF_00177}. SQ SEQUENCE 529 AA; 59977 MW; BEBEDA5167C743A9 CRC64; MSEQEIIGKG TWIDKLAYEL LEREKALGRN TDVLRVESGL GASGIPHIGS LGDAVRAYGV KLALENLGYK SELIAYSDDL DGLRKIPEGM KDFGLEEHIA KPVSLIPDPY GEHDSYGMHM SSILLEGLDE VGIKYEFRRA KDTYKQGLLK DQIHTILQNS TKIGDKIAEL VGQEKYQKYL PYFPVCANCN RLYTAEAIEY IADEKKVKYR CHDAEIGGKM VKGCGYEGEA DITKDLGKLA WKVEFAARWS AFDIRFEAYG KDIMDSVKVN DWVADEILQF PHPHHVKYEM FLDKGGKKIS KSLGNVLTAQ RWMEFGSPKS ILLLLYKRIT GARELGLEDI PSLMSEYNEL EDIFFGRIKV DNPAKLTKSK GLYEYVNLLN PPKQASTHVN YRLLIELAKI FKENRNERVM KKLLDYGVIK NPEPEIEKLI DLAGNYSDEF DEQEKTQIDL DETSKKALKI LSEALGADEE PEDIQNTIYQ IAKSNDVQPK DFFKILYQII LGTSRGPKIG PFISDIGRKQ VAKTISEYT // ID A9A600_NITMS Unreviewed; 241 AA. AC A9A600; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 52. DE RecName: Full=Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719}; DE EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719}; DE AltName: Full=Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; DE AltName: Full=Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; GN Name=cobS {ECO:0000256|HAMAP-Rule:MF_00719}; GN OrderedLocusNames=Nmar_1582 {ECO:0000313|EMBL:ABX13478.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13478.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13478.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13478.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Joins adenosylcobinamide-GDP and alpha-ribazole to CC generate adenosylcobalamin (Ado-cobalamin). Also synthesizes CC adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and CC alpha-ribazole 5'-phosphate. {ECO:0000256|HAMAP-Rule:MF_00719}. CC -!- CATALYTIC ACTIVITY: Adenosylcobinamide-GDP + alpha-ribazole 5'- CC phosphate = GMP + adenosylcobalamin 5'-phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00719}. CC -!- CATALYTIC ACTIVITY: Adenosylcobinamide-GDP + alpha-ribazole = GMP CC + adenosylcobalamin. {ECO:0000256|HAMAP-Rule:MF_00719}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00719}; CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis; CC adenosylcobalamin from cob(II)yrinate a,c-diamide: step 7/7. CC {ECO:0000256|HAMAP-Rule:MF_00719}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_00719}; Multi-pass membrane protein {ECO:0000256|HAMAP- CC Rule:MF_00719}. CC -!- SIMILARITY: Belongs to the CobS family. {ECO:0000256|HAMAP- CC Rule:MF_00719}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13478.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1582; -. DR EnsemblBacteria; ABX13478; ABX13478; Nmar_1582. DR KEGG; nmr:Nmar_1582; -. DR eggNOG; arCOG04338; Archaea. DR eggNOG; COG0368; LUCA. DR HOGENOM; HOG000228087; -. DR KO; K02233; -. DR OMA; CACCGIP; -. DR BioCyc; NMAR436308:GI3J-1626-MONOMER; -. DR UniPathway; UPA00148; UER00238. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0051073; F:adenosylcobinamide-GDP ribazoletransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008818; F:cobalamin 5'-phosphate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00719; CobS; 1. DR InterPro; IPR003805; CobS. DR Pfam; PF02654; CobS; 1. DR TIGRFAMs; TIGR00317; cobS; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00719}; KW Cobalamin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00719}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00719}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_00719}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00719}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_00719}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00719}. FT TRANSMEM 34 54 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00719}. FT TRANSMEM 56 76 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00719}. FT TRANSMEM 105 125 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00719}. FT TRANSMEM 134 154 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00719}. FT TRANSMEM 175 195 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00719}. FT TRANSMEM 198 218 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00719}. SQ SEQUENCE 241 AA; 25268 MW; D2029B1969CF4AD0 CRC64; MLKEIGSVFS FLTIFPSSNA TLESIAKYMY VFPIVGIAIG LLVGSFGFGL SFFLDPLLVS LLVVASIAIV TGIHHADGLA DFADGLMVKG TKEKKIQAMK DLSTGSAGIV GLVLYLVGLI ITISLTNGFD LFKAILISEI LAKFSMVLMA SLGNSAASGS NSPFVHLMKD KRKLVAAFII MLIPVALIGE TTGLIMLGVT VALTLFLLGI STRSFGGITG DVIGATNELT RLASLMVFVS I // ID A9A1R4_NITMS Unreviewed; 252 AA. AC A9A1R4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 43. DE SubName: Full=Acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:ABX12035.1}; GN OrderedLocusNames=Nmar_0135 {ECO:0000313|EMBL:ABX12035.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12035.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12035.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12035.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12035.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R4; -. DR STRING; 436308.Nmar_0135; -. DR EnsemblBacteria; ABX12035; ABX12035; Nmar_0135. DR KEGG; nmr:Nmar_0135; -. DR eggNOG; ENOG4102TT4; Archaea. DR eggNOG; COG1861; LUCA. DR HOGENOM; HOG000057316; -. DR KO; K07257; -. DR OMA; SHRFTID; -. DR BioCyc; NMAR436308:GI3J-138-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR003329; Cytidylyl_trans. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF02348; CTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotidyltransferase {ECO:0000313|EMBL:ABX12035.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12035.1}. SQ SEQUENCE 252 AA; 29612 MW; C8620FB63F2AEDCE CRC64; MKFCNVGIII QARTGSDRFP KKVLASIEKK PMIWHIVNRC KKVKNIDKII LATTTLKEDY PLISLAKKNK IEYFRGSKND VLDRFYQCST SNNLDIIIRI TGDCPLVDPK LIDQFLDFFS HKKYDYVSNT INPTYPDGLD IEIFSFKALK KAWNMSKKKS NREHVTTFIK HHPEKFKIKN FENNTNLSNY RLTVDHKNDL KLIRKIYKEF RPNIKFSTKS VISLLNKNPE LFKINQNISR NEGYEKSLLN DN // ID A9A3H8_NITMS Unreviewed; 266 AA. AC A9A3H8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Transcriptional regulator protein-like protein {ECO:0000313|EMBL:ABX12910.1}; GN OrderedLocusNames=Nmar_1014 {ECO:0000313|EMBL:ABX12910.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12910.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12910.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12910.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12910.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12910; ABX12910; Nmar_1014. DR KEGG; nmr:Nmar_1014; -. DR eggNOG; arCOG04362; Archaea. DR eggNOG; COG4742; LUCA. DR HOGENOM; HOG000023856; -. DR OMA; NEKEACI; -. DR BioCyc; NMAR436308:GI3J-1042-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 266 AA; 30641 MW; 88086D8EF8EACB8A CRC64; MADLIDETAD YVLELASSQR LSILIGLLTK QSTPTAFAKS IDSTKQEVHR NFSRLEKAGL IKKNVGGTYS LTTFGQVVCT QVPSLVFLSQ NRKYFEEHNF GDVPHKFQMR CGQLANSQYV KGVSKVLETW KTIYKNSDEY VYEILSEVPL DLIEPLVKRV KKGIRFNYIF SESAVVPKGR KTLLKKLGFD KLMEKGLVER KMEKDVKTVV VLNEKEACIM FPTLDGESDI SEMLYSDDPM FHEWCLDYFR YCWYGSDIFK ESKLKE // ID A9A339_NITMS Unreviewed; 96 AA. AC A9A339; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12167.1}; GN OrderedLocusNames=Nmar_0271 {ECO:0000313|EMBL:ABX12167.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12167.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12167.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12167.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12167.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0271; -. DR EnsemblBacteria; ABX12167; ABX12167; Nmar_0271. DR KEGG; nmr:Nmar_0271; -. DR eggNOG; arCOG08784; Archaea. DR eggNOG; ENOG41110B3; LUCA. DR HOGENOM; HOG000109617; -. DR OMA; CGGPAGC; -. DR BioCyc; NMAR436308:GI3J-281-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 96 AA; 10699 MW; D2F118E7923933B1 CRC64; MKFPGTCIVC NEKIEINEIG LWAKGLGVKH EKCAEINELQ CIVCGGPAGC QQCEFQEICD IANVSQFCMC KNCSEQKTPF DSYQKTTNKK FPIINS // ID A9A196_NITMS Unreviewed; 100 AA. AC A9A196; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12382.1}; GN OrderedLocusNames=Nmar_0486 {ECO:0000313|EMBL:ABX12382.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12382.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12382.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12382.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12382.1; -; Genomic_DNA. DR ProteinModelPortal; A9A196; -. DR STRING; 436308.Nmar_0486; -. DR EnsemblBacteria; ABX12382; ABX12382; Nmar_0486. DR KEGG; nmr:Nmar_0486; -. DR eggNOG; arCOG11286; Archaea. DR eggNOG; ENOG4111QRQ; LUCA. DR HOGENOM; HOG000269525; -. DR BioCyc; NMAR436308:GI3J-506-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030234; F:enzyme regulator activity; IEA:InterPro. DR GO; GO:0006808; P:regulation of nitrogen utilization; IEA:InterPro. DR InterPro; IPR002187; N-reg_PII. DR InterPro; IPR011322; N-reg_PII-like_a/b. DR Pfam; PF00543; P-II; 1. DR SUPFAM; SSF54913; SSF54913; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 100 AA; 11445 MW; 82151F07E852608A CRC64; MKLYNVKLLT ITCEILAQEN IIEILKKHEI TGYTTYEVDG NGARGLRGQG LKTEKNVKVE VIMREEKLQD IVEEISRTLF ANYAIVLYVS DVGVLRPEKF // ID A9A4Q8_NITMS Unreviewed; 226 AA. AC A9A4Q8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 42. DE SubName: Full=Protein-disulfide isomerase-like protein {ECO:0000313|EMBL:ABX13036.1}; GN OrderedLocusNames=Nmar_1140 {ECO:0000313|EMBL:ABX13036.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13036.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13036.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13036.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13036.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Q8; -. DR STRING; 436308.Nmar_1140; -. DR EnsemblBacteria; ABX13036; ABX13036; Nmar_1140. DR KEGG; nmr:Nmar_1140; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR BioCyc; NMAR436308:GI3J-1172-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX13036.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 24 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 54 198 Thioredoxin. {ECO:0000259|Pfam:PF13462}. SQ SEQUENCE 226 AA; 25584 MW; 8EFC4A7DB4E9D17D CRC64; MKLSKKIIIG AIIIAIIFLL HSLVSPEIDK KFTPENDSDT LSNNDFNSVP PSVSPVVGDP DAPVTIFAFN DYQCTSCKYW YDTNYSEISE KLVETNKANI VFLDVSPLGD DSILISQATF CADEQKKYSE YQEMLYVSQQ EIDTWAKSDQ LKNFALELDL DIDQFSNCLD SGKYGQDIQS NIDYTNSLGV EKIPLFKIVN FKGEEHVFKG GIPRVLFEEV VDRFQD // ID A9A5E2_NITMS Unreviewed; 509 AA. AC A9A5E2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12341.1}; GN OrderedLocusNames=Nmar_0445 {ECO:0000313|EMBL:ABX12341.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12341.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12341.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12341.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12341.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0445; -. DR EnsemblBacteria; ABX12341; ABX12341; Nmar_0445. DR KEGG; nmr:Nmar_0445; -. DR eggNOG; arCOG02320; Archaea. DR eggNOG; COG0840; LUCA. DR OMA; DRISIES; -. DR BioCyc; NMAR436308:GI3J-463-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 509 AA; 56752 MW; 9831B9190660D5C2 CRC64; MATKTAKKKT TPKAKKETKK VTKREPSPSV LLKKVASVSD SNKALQKEIK VMSKIFGENQ KVLVSMKGMI DSLTSALEHI QKQSKQLNLI EDDTQKLYAG LNQVRTQSNL VTKINNQTAK LQEEISRISE EQKLSKTQEI SQQVEDSMNS IRNNSQMIIK IAQRIDEVRD DLRKVSGKTD SFLEVGSEMD KLKNSIEEIS GKTAKLETGS QIIESLKQEL SKITDGVSDS SNLNSELEAI KITIDAISSK AAKIDSLGGV IEGLKQQFET VATKANSVDN VSLESIKELA GKIDKIETEI GALSHRADST AFVGEGLKSV QNDLSEFKQN VFDKTNSIEQ KISSAADIIK RQDAASAEFH KKTEKLFEEM QSVRSVTNKA SDDSSKEMMA LLKLSEYQSN IRMNAESKYG DAKDLEKMAE QTADIVNLFD RISIESGEKI PLPHEVRQWA VSKILDCADK WEIRFSDVYS ILTNAIGRDL LKEAVRIQQV RDIYGIRAVD EIRKDLNIS // ID A9A5H5_NITMS Unreviewed; 197 AA. AC A9A5H5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12686.1}; GN OrderedLocusNames=Nmar_0790 {ECO:0000313|EMBL:ABX12686.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12686.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12686.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12686.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12686.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0790; -. DR EnsemblBacteria; ABX12686; ABX12686; Nmar_0790. DR KEGG; nmr:Nmar_0790; -. DR BioCyc; NMAR436308:GI3J-816-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 197 AA; 21064 MW; 9237A3BD534F5060 CRC64; MDKTVVLGSI LAVFVVSSLM MSPAVAASIH EFTAIALSFS DEFKVRITAT TEIPQDGTGV SYGYGVVTEE NFFDTILVTA THGGFLESAV QNGPEDPKWH SHYVTLTDDG DVNNACSGLE IADISYHAPG EVKIYGENIV FDGVKTLDSV NPMTGESNTF DGGENIVAII SFDLTPVFND GELTNVCVDV NGLYPIR // ID A9A615_NITMS Unreviewed; 443 AA. AC A9A615; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 40. DE SubName: Full=UbiD family decarboxylase {ECO:0000313|EMBL:ABX13493.1}; GN OrderedLocusNames=Nmar_1597 {ECO:0000313|EMBL:ABX13493.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13493.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13493.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13493.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13493.1; -; Genomic_DNA. DR ProteinModelPortal; A9A615; -. DR STRING; 436308.Nmar_1597; -. DR EnsemblBacteria; ABX13493; ABX13493; Nmar_1597. DR KEGG; nmr:Nmar_1597; -. DR eggNOG; arCOG01671; Archaea. DR eggNOG; COG0043; LUCA. DR HOGENOM; HOG000227663; -. DR OMA; THFHAYV; -. DR BioCyc; NMAR436308:GI3J-1641-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016831; F:carboxy-lyase activity; IEA:InterPro. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR InterPro; IPR002830; UbiD. DR Pfam; PF01977; UbiD; 1. DR SUPFAM; SSF50475; SSF50475; 1. DR TIGRFAMs; TIGR00148; TIGR00148; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 443 AA; 49852 MW; 6355FE9766D844C2 CRC64; MSDLRNYISK IKKNKELKTV KTKVSTKYEI AGITAKVDGS HAVLFENIKE SDFHLVANLV GTRKRFALAV GGTEYNIHEK VISAIKKAKA PKIISSGKFQ ENSSKNLLSM PIVTHFEKES GPFITSSIAY AKNPETGKQN SSFHRMMPID KTHFSIRMVE GRHLHRCFID AKEHGEDLKI AITVGVHPAI SIAGAYQAEW GKDEIDIANS LLGGKLTLTK LPFTGLNIPS GSEIVMEGRV LQDKTHPEWM VEMLQTYDHE RSQPVFELEN MYFRNNPIFH DVLSGYSEHR LLMGMPIESK LNGDLKKAFK QTQQVSMTNG GCNWLHAVVQ IKKKHDSDAK KIIKKTFESH RSLKQVTVVD EDIDPNSAEA VEYAMATRFQ ADKDLIILKN VRGSSLDPSS NQKKLQTAKM GIDATRSLSK RPEGFELAKI PKIDKIKLEK YFK // ID A9A4L9_NITMS Unreviewed; 115 AA. AC A9A4L9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12997.1}; GN OrderedLocusNames=Nmar_1101 {ECO:0000313|EMBL:ABX12997.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12997.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12997.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12997.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12997.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1101; -. DR EnsemblBacteria; ABX12997; ABX12997; Nmar_1101. DR KEGG; nmr:Nmar_1101; -. DR eggNOG; arCOG10574; Archaea. DR eggNOG; ENOG41110I7; LUCA. DR BioCyc; NMAR436308:GI3J-1132-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 62 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 115 AA; 13951 MW; 07C1A961B318372D CRC64; MDHIFHFDGD SERISWKIKT GDSISEQNRE HVEMYKDKVT NLQSKYIAFH VGLFWAIGVF IIKNEDSVKV KFNEKAMFEH FKFNKEIDDE FIKNRMRFIK QLISQRKLKM EFELI // ID A9A243_NITMS Unreviewed; 154 AA. AC A9A243; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABX12456.1}; GN OrderedLocusNames=Nmar_0560 {ECO:0000313|EMBL:ABX12456.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12456.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12456.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12456.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12456.1; -; Genomic_DNA. DR ProteinModelPortal; A9A243; -. DR STRING; 436308.Nmar_0560; -. DR EnsemblBacteria; ABX12456; ABX12456; Nmar_0560. DR KEGG; nmr:Nmar_0560; -. DR eggNOG; arCOG00310; Archaea. DR eggNOG; COG1225; LUCA. DR HOGENOM; HOG000022344; -. DR KO; K03564; -. DR OMA; QPVPDFE; -. DR BioCyc; NMAR436308:GI3J-582-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016209; F:antioxidant activity; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR000866; AhpC/TSA. DR InterPro; IPR024706; Peroxiredoxin_AhpC-typ. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF00578; AhpC-TSA; 1. DR PIRSF; PIRSF000239; AHPC; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 152 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 154 AA; 17641 MW; 0863120CE8FFB266 CRC64; MIEEGEKVPK FEVSDSNGNK VKSSDFKGKK HVIYFYPKDF TPGCTTEADE FAKDYKKFQK EGIEIVGVSP DDVDSHKKFC DKMGIKFPLL ADVDKEISKS FGVWGLKKFM GREYMGVMRS TFLVDEKGKI FKIYPKVKPA GHSKQVFEDF KNLE // ID A9A4K1_NITMS Unreviewed; 100 AA. AC A9A4K1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12979.1}; GN OrderedLocusNames=Nmar_1083 {ECO:0000313|EMBL:ABX12979.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12979.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12979.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12979.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12979.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1083; -. DR EnsemblBacteria; ABX12979; ABX12979; Nmar_1083. DR KEGG; nmr:Nmar_1083; -. DR eggNOG; arCOG01120; Archaea. DR eggNOG; COG5431; LUCA. DR HOGENOM; HOG000107019; -. DR OMA; KFADSEY; -. DR BioCyc; NMAR436308:GI3J-1114-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR InterPro; IPR007527; Znf_SWIM. DR PROSITE; PS50966; ZF_SWIM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 30 75 SWIM-type. {ECO:0000259|PROSITE:PS50966}. SQ SEQUENCE 100 AA; 11457 MW; 4FDB561CAA9025FA CRC64; MNKDPDRIES LVSEKRVKLH VFEPSQRKIW TVVGKGEEHW VDPSGLYCSC PAFYFGKLNG KDTCYHLDSV KLAQTENKVE KIIFSDDEFS DFLSGLLSDL // ID A9A612_NITMS Unreviewed; 221 AA. AC A9A612; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13490.1}; GN OrderedLocusNames=Nmar_1594 {ECO:0000313|EMBL:ABX13490.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13490.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13490.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13490.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13490.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1594; -. DR EnsemblBacteria; ABX13490; ABX13490; Nmar_1594. DR KEGG; nmr:Nmar_1594; -. DR eggNOG; arCOG08773; Archaea. DR eggNOG; ENOG411100Q; LUCA. DR BioCyc; NMAR436308:GI3J-1638-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 221 AA; 25582 MW; 2E6120A4DEA87CFE CRC64; MSVSQNECFV ELFSFDDLAR YACAFREYPQ RVYSQEFNGE RVVSCSMMLA NTLLIFYTPL KKSGRYISYQ VTGGKEICDI VESTKDISHY APVVHMESQI SPLPENEKDI PDQFHPIPVK DLGSLARLTY DPEFPDEQNL TLFALPRKKS WILGYITSLE MDDVYYNFNY VELDSEPTKN FLKYQGNHGK NPEFSDTIDH GFSYFPIIKI KNEHPVFGFS D // ID A9A5P8_NITMS Unreviewed; 381 AA. AC A9A5P8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13053.1}; GN OrderedLocusNames=Nmar_1157 {ECO:0000313|EMBL:ABX13053.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13053.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13053.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13053.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13053.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13053; ABX13053; Nmar_1157. DR KEGG; nmr:Nmar_1157; -. DR BioCyc; NMAR436308:GI3J-1189-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 381 AA; 43541 MW; 7C282A35B8E56E87 CRC64; MKNSVCLALI ASLILILPAQ YVYADNWGLP TFDLTNTFES IVEPISKPAE INELMWELPF VIQKLHDGMI DYEILAKIGD KLHYVKNTYP DEFDLLVTIF PDVPEFLDHF YTYEKYVLIS SISHSMNSDD ILDIPEITIP LQQIAIDDMM MQMAYAENLE GVDSKQEITT KIAFEVMEKV HTIDPKSGKE VSLGEHLNTL FPERTYEEML FLVTGTEYIF SIPLVPHEDQ LISIDELCQR EIDAQKCELL KKYAILGHKA AKKDPDAALE ITKIILEIAL DVNYKTNAGH DDKILFALYY ADKSSEELLD EKMFRIDGNM MSLNDMTNLQ CGDANISLAE KMIVSYNFKK QNVVEMQSEY NDVINLLQNI DEDSCSLSLV K // ID A9A4G1_NITMS Unreviewed; 493 AA. AC A9A4G1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12650.1}; GN OrderedLocusNames=Nmar_0754 {ECO:0000313|EMBL:ABX12650.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12650.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12650.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12650.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12650.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0754; -. DR EnsemblBacteria; ABX12650; ABX12650; Nmar_0754. DR KEGG; nmr:Nmar_0754; -. DR eggNOG; arCOG09748; Archaea. DR eggNOG; ENOG410XXNK; LUCA. DR OMA; QASIANE; -. DR BioCyc; NMAR436308:GI3J-780-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 196 258 {ECO:0000256|SAM:Coils}. FT COILED 263 304 {ECO:0000256|SAM:Coils}. FT COILED 389 465 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 493 AA; 56844 MW; 366151628B0C5C1E CRC64; MSQLTLSQTI ENVQSLIDSG NGDPGRLYHI LECLKNNRPL YHSDQNYLEQ KLESSFSLED ESEPVTGSDV LPKIQELINS GNGDPGRLQH IFDMISNNKT LYHSDAAYLE SKLNEPITPK SAEYTTIHES QHTETIPPPK PQPEVKPTPE EKPVSRGSMP KGWNSSLDST EIEKISKDIQ KEEEKIQKQK SISSEIDAHR SKLTQLVSHR KEYEQKVTQE KATLEAQIQE ERLKIKSQTK LSEEIIAQKE ELAKVKKERT NIIKNINLEK TKISKELAQQ KRQLAQAQLE QEKIEKQVEI EQTLLTNMIE EQKSRLLEQA SIANEIKSKQ SDLEKTKKDY EFIVSQVNEE KAKFAESEKL KNLIKSQETD LIKAKEERLT LINTISKEKE AITKKTNEEK ERLKSQENLA KQLKKEEKVY ESLKKKREKT EQQIKLKNQK LKEKQQKLKK QISEKDKKLK SLNSKKTTAK KPAKKTTKKA VTKTKKSVKK KSS // ID A9A4K5_NITMS Unreviewed; 518 AA. AC A9A4K5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12983.1}; GN OrderedLocusNames=Nmar_1087 {ECO:0000313|EMBL:ABX12983.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12983.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12983.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12983.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12983.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1087; -. DR EnsemblBacteria; ABX12983; ABX12983; Nmar_1087. DR KEGG; nmr:Nmar_1087; -. DR eggNOG; arCOG08812; Archaea. DR eggNOG; ENOG4111107; LUCA. DR HOGENOM; HOG000110006; -. DR BioCyc; NMAR436308:GI3J-1118-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 518 AA; 58528 MW; AC04700A542DC76B CRC64; MKNLLVLLFV LGFSLVGSAE LVFGHGFGSE TLPPASIGDR DVTFSISVSP SIFDPTVNEH LITMNLFDSK TEAAIEHVTF EVEFLKNDQQ LFKEVFHDET GTLKLSVISD DSDEISIQGT QESVLGGWLV DEQHPLTFTG PVFTSGGLYE YKVKILSIDS DSNVLKKPIE FEGGISIADH QYFNVDDHLK QSQKLHVVSY FDQIQDFNFD SNQLTFTIPF DWNQNFQEIS VIHQEVRIPN TFSDFLSTNY DSYVNGLLLP HDITTIDDYS FDDRTVHTVI TRDLLKLLKN NVQTSDEIIE FKLQPNDKVD FPLDFTTSDY QVFLYWEPEI IHAGEDVTFF IDFQQIFSDH HKHHVEYDFS VIQQGKTIYQ NHFKGDIDSD YSNIHQVNFD SKYSGSANLV VSNIDGDSES KGNFIIVIEP GISANSETNE IPSWVKSNAG WWADGSIDDD SFIQGIQFLI DENIIQIPPT LTGSNSQTNE VPVWVKVNAG WWADGTIDDD AFVQGMQFLI KSGIISVN // ID A9A4T8_NITMS Unreviewed; 184 AA. AC A9A4T8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABX13392.1}; GN OrderedLocusNames=Nmar_1496 {ECO:0000313|EMBL:ABX13392.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13392.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13392.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13392.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13392.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4T8; -. DR STRING; 436308.Nmar_1496; -. DR EnsemblBacteria; ABX13392; ABX13392; Nmar_1496. DR KEGG; nmr:Nmar_1496; -. DR eggNOG; arCOG00314; Archaea. DR eggNOG; COG0526; LUCA. DR HOGENOM; HOG000004976; -. DR OMA; YDAACTP; -. DR BioCyc; NMAR436308:GI3J-1535-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016209; F:antioxidant activity; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR000866; AhpC/TSA. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF00578; AhpC-TSA; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 163 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 184 AA; 20810 MW; FB15DF6EBCADBAB6 CRC64; MVLLESQVKL KTGDTAPDFD LLGIDDKKHA LGDYKDYKGY LVIFMCNHCP YVKAKVDALN ELYEKCGSDV AMIAINSNDS TDYPEDSFDA MKETAKEKGF KFDYLVDETQ EIAKKYGAMC TPDPYLFDGQ KQLVFHGRID NAMKPDDTAT EKTMINNIDK LVTGQKIEKD FDPSIGCSIK WKEN // ID A9A4X4_NITMS Unreviewed; 107 AA. AC A9A4X4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13428.1}; GN OrderedLocusNames=Nmar_1532 {ECO:0000313|EMBL:ABX13428.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13428.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13428.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13428.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13428.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1532; -. DR EnsemblBacteria; ABX13428; ABX13428; Nmar_1532. DR KEGG; nmr:Nmar_1532; -. DR eggNOG; arCOG10590; Archaea. DR eggNOG; ENOG41110V5; LUCA. DR OMA; NNGKWER; -. DR BioCyc; NMAR436308:GI3J-1574-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 107 AA; 12316 MW; F72649481362F00B CRC64; MEEGEKRLKQ EDCSEDVLGS GILTLTNKRL AFDKTRARMM DFSKHMGDTI LDITLDNVTK TWKEGLLMKK VCFIVKTDDG EKIYKFGVFN TKSWLKSIDE AVANYKN // ID A9A4T4_NITMS Unreviewed; 336 AA. AC A9A4T4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13388.1}; GN OrderedLocusNames=Nmar_1492 {ECO:0000313|EMBL:ABX13388.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13388.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13388.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13388.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13388.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1492; -. DR EnsemblBacteria; ABX13388; ABX13388; Nmar_1492. DR KEGG; nmr:Nmar_1492; -. DR eggNOG; arCOG03272; Archaea. DR eggNOG; ENOG410ZZ0A; LUCA. DR BioCyc; NMAR436308:GI3J-1530-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR026363; CxxC-x17-CxxC_dom. DR TIGRFAMs; TIGR04272; cxxc_cxxc_Mbark; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 336 AA; 39862 MW; 6D5A020FCC4E111A CRC64; MELYRSKYSD KKKSGGGRRR DDTRRSFRNS RNDRRDSRDD RYSGGRRESA TVTCADCGDE CQVPFVPRSN KPVYCDDCFR ESRHENLGDD RYSRNDRRES YRDDRRESRR DDRFSRKRKE SAFVTCADCG TECEIPFVPK TDRPVYCSDC FKQNKPQDNE YEKFSRDDRR ESRRDDRRES RRDDRRESRR DDRYSRDRRE SSRDNRRESG RDKPRKLRND KLSKKRESFF SNGSDKFYAT IKEKLFEILG GKACSSCGFK DERALGFSPI SDDSSFDEIG RGGSASSWGK YISDPDLARE ELKVLCLNCN EIRQPIAKPK EQSSRPKRKK SKFFPR // ID A9A1C1_NITMS Unreviewed; 74 AA. AC A9A1C1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12756.1}; GN OrderedLocusNames=Nmar_0860 {ECO:0000313|EMBL:ABX12756.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12756.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12756.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12756.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12756.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0860; -. DR EnsemblBacteria; ABX12756; ABX12756; Nmar_0860. DR KEGG; nmr:Nmar_0860; -. DR eggNOG; arCOG10554; Archaea. DR eggNOG; ENOG411109Y; LUCA. DR BioCyc; NMAR436308:GI3J-888-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 74 AA; 8691 MW; 402872DD0C507390 CRC64; MSETEKDELI DAQKQVIGIL FEVIKRLQAN SDLDEEYFEI VTNKENNETR LNEILNERKE NAKIVGRLLE QLEV // ID A9A1A4_NITMS Unreviewed; 62 AA. AC A9A1A4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12390.1}; GN OrderedLocusNames=Nmar_0494 {ECO:0000313|EMBL:ABX12390.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12390.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12390.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12390.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12390.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0494; -. DR EnsemblBacteria; ABX12390; ABX12390; Nmar_0494. DR KEGG; nmr:Nmar_0494; -. DR OMA; KKIHITC; -. DR BioCyc; NMAR436308:GI3J-514-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 28 62 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 62 AA; 7584 MW; 49D3BCE3F35DEAB1 CRC64; MEYEIKKKIH ITCPHCEKAI ETEIEIELEI EEKKKKDKKK DKKKDKKEKK KDKKKSKKKS KK // ID A9A172_NITMS Unreviewed; 174 AA. AC A9A172; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12358.1}; GN OrderedLocusNames=Nmar_0462 {ECO:0000313|EMBL:ABX12358.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12358.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12358.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12358.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12358.1; -; Genomic_DNA. DR ProteinModelPortal; A9A172; -. DR STRING; 436308.Nmar_0462; -. DR EnsemblBacteria; ABX12358; ABX12358; Nmar_0462. DR KEGG; nmr:Nmar_0462; -. DR eggNOG; arCOG04006; Archaea. DR eggNOG; COG1413; LUCA. DR BioCyc; NMAR436308:GI3J-481-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.10.10; -; 1. DR InterPro; IPR011989; ARM-like. DR InterPro; IPR016024; ARM-type_fold. DR SUPFAM; SSF48371; SSF48371; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 174 AA; 20255 MW; 30BC4DB8F6A383EE CRC64; MLSPTMSTVN IPDEFDKIIK AMPLEERFLK LEEIFKTSKD ESERWDAVWL AGEIPVEVGL KGPLFEKTTD LFAWVLKNDD NDVVRHEVCY QIAARNMRRI IPELAYAANY DPSPLVRHEA TECLMIIRAT DQIDAMKRSC QDENESVRNT AELVLKRMRR YKSKFNAESE WVSI // ID A9A2N5_NITMS Unreviewed; 252 AA. AC A9A2N5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Metallophosphoesterase {ECO:0000313|EMBL:ABX13274.1}; GN OrderedLocusNames=Nmar_1378 {ECO:0000313|EMBL:ABX13274.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13274.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13274.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13274.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13274.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2N5; -. DR EnsemblBacteria; ABX13274; ABX13274; Nmar_1378. DR KEGG; nmr:Nmar_1378; -. DR eggNOG; arCOG01153; Archaea. DR eggNOG; COG1409; LUCA. DR HOGENOM; HOG000286270; -. DR OMA; YHISDIH; -. DR BioCyc; NMAR436308:GI3J-1413-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.60.21.10; -; 1. DR InterPro; IPR004843; Calcineurin-like_PHP_apaH. DR InterPro; IPR029052; Metallo-depent_PP-like. DR Pfam; PF00149; Metallophos; 1. DR SUPFAM; SSF56300; SSF56300; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 182 Metallophos. {ECO:0000259|Pfam:PF00149}. SQ SEQUENCE 252 AA; 28644 MW; 779258731C313564 CRC64; MIIVQISDLH IGSQFLEEKF DVLVSEVNEL NPDVIVITGD LTNEGLMKEY EKCKSLLEKF NTKKIIAISG NHDYRNTGYL LFKKFFPFQT VNELDNDVVL VTVGTARPDR NEGEVGYRQN LWLERTMKKY KDKIKIVAMH HHLIAIPDTG SDQLTVVDAG DVLRTVLDSE VDVVLCGHKH RPWAWNFGTL TVVNAGTATS ERVRGLFENT YNILTIKDKQ VNVDLKIVGG KRVPIDEIVK NYSQFHDELD NA // ID A9A2I0_NITMS Unreviewed; 553 AA. AC A9A2I0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13219.1}; GN OrderedLocusNames=Nmar_1323 {ECO:0000313|EMBL:ABX13219.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13219.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13219.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13219.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13219.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13219; ABX13219; Nmar_1323. DR KEGG; nmr:Nmar_1323; -. DR HOGENOM; HOG000023839; -. DR BioCyc; NMAR436308:GI3J-1356-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 553 AA; 61200 MW; B7A177ACF709459F CRC64; MHCTAVNTYS LTSFFDVCTT MSKSYPKFTI LTSILIISTI ILSTQGFSNT VFADDEAISH DYDYVAGIHN VITFHFRDGV ETVNFPVFST TSDIVSDAGT SFSIEGVVGH NPHLHMALDE AFKHRQSKLT AGSAFDYDHR FFDVDVQVMQ DTTELKSFSY RNCEISSQSV TTQTDDYESY HVPNSGFAIV NSIEFNCGGV SINQEEIFAS ARPSDKIFTD YGLLPFKQAN DMRTLLTFDF DNGAEKIESV IFTSTGGYSE EDIGTPSFQI ITAVLPHPLI DNAIIKSQKV GGLATSYNED FDVTVDLVIP EKLTGLTKTD TQTIRTLNYE DCIVSGYDIL TLQDKEEGYT GKRGFATAEI LDVECSGLSP VNPDNEPQPV TVNYNMGAGP RAVATFSFDS GTEVVEFPEF YQGNLISKAN PTFELVGVPG VTPLLYEVVD DSRKTGAKTT GVSSLDELFD VNVSMMYGNI HARGYDYSKC HVTDYKLKTE HDLEESFYKG FALTNEFHFE CIGYSPVEIH LTSAEKGDME SSKDYQAKQR SSWGPGFAYV PKN // ID A9A4X2_NITMS Unreviewed; 188 AA. AC A9A4X2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE SubName: Full=Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family {ECO:0000313|EMBL:ABX13426.1}; GN OrderedLocusNames=Nmar_1530 {ECO:0000313|EMBL:ABX13426.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13426.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13426.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13426.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the HAM1 NTPase family. CC {ECO:0000256|RuleBase:RU003781}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13426.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X2; -. DR STRING; 436308.Nmar_1530; -. DR EnsemblBacteria; ABX13426; ABX13426; Nmar_1530. DR KEGG; nmr:Nmar_1530; -. DR eggNOG; arCOG04184; Archaea. DR eggNOG; COG0127; LUCA. DR HOGENOM; HOG000293320; -. DR KO; K02428; -. DR OMA; PNFPRTI; -. DR BioCyc; NMAR436308:GI3J-1572-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.950.10; -; 1. DR InterPro; IPR002637; Ham1p-like. DR InterPro; IPR029001; ITPase-like_fam. DR PANTHER; PTHR11067; PTHR11067; 1. DR Pfam; PF01725; Ham1p_like; 1. DR SUPFAM; SSF52972; SSF52972; 1. DR TIGRFAMs; TIGR00042; TIGR00042; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|RuleBase:RU003781}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 188 AA; 21571 MW; F213518FF1EA32F0 CRC64; MHKSFDLYFV SSNSHKYKEA KNILDSFGIK LGFLKLTLEE IQSNSLKEIA ENKAKDAFSK CKKPIIIEDD GLFIDSLNGF PGPYSSYVFR TIGNNGILKL LSSKRNAKFV SLITYCDKKN LKTFDAKLDG TISKSQKGKG WGYDPIFIPK NSRKTFAEIN HKNELSHRFK ALKKFSNWYL HKLESNDR // ID A9A3E9_NITMS Unreviewed; 120 AA. AC A9A3E9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12881.1}; GN OrderedLocusNames=Nmar_0985 {ECO:0000313|EMBL:ABX12881.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12881.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12881.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12881.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12881.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0985; -. DR EnsemblBacteria; ABX12881; ABX12881; Nmar_0985. DR KEGG; nmr:Nmar_0985; -. DR eggNOG; arCOG08756; Archaea. DR eggNOG; ENOG4110ZRZ; LUCA. DR HOGENOM; HOG000108646; -. DR OMA; AKRISTK; -. DR BioCyc; NMAR436308:GI3J-1013-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 120 AA; 13718 MW; 37C7E7F7B6F5A3A6 CRC64; MILEKVGVGN IIYDLRKKIQ QAEADLAQLS DPVSDIPELV ETANLIRSNE YLQKTNLKQT ELLAIYQKYS DALEELLSTV FEIQNDLKEI VKEQSSLLSK PKRTPAKRIS TKRKTKTTKK // ID A9A3Z4_NITMS Unreviewed; 53 AA. AC A9A3Z4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 38. DE SubName: Full=Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ABX13694.1}; GN OrderedLocusNames=Nmar_1798 {ECO:0000313|EMBL:ABX13694.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13694.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13694.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13694.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13694.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13694; ABX13694; Nmar_1798. DR KEGG; nmr:Nmar_1798; -. DR eggNOG; arCOG00818; Archaea. DR eggNOG; COG2002; LUCA. DR HOGENOM; HOG000110240; -. DR OMA; MEEDGHI; -. DR BioCyc; NMAR436308:GI3J-1846-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR InterPro; IPR007159; SpoVT-AbrB_dom. DR Pfam; PF04014; MazE_antitoxin; 1. DR SMART; SM00966; SpoVT_AbrB; 1. DR TIGRFAMs; TIGR01439; lp_hng_hel_AbrB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 53 SpoVT-AbrB. {ECO:0000259|SMART:SM00966}. SQ SEQUENCE 53 AA; 6094 MW; 370187A3A8D64B38 CRC64; MSIQENEVLV KITSAGTISI PKQFRKYMDI QKGEYVKLIL GKDRLIVRKI TIS // ID A9A4Z6_NITMS Unreviewed; 238 AA. AC A9A4Z6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit {ECO:0000313|EMBL:ABX11905.1}; GN OrderedLocusNames=Nmar_0005 {ECO:0000313|EMBL:ABX11905.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11905.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11905.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11905.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11905.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Z6; -. DR STRING; 436308.Nmar_0005; -. DR EnsemblBacteria; ABX11905; ABX11905; Nmar_0005. DR KEGG; nmr:Nmar_0005; -. DR eggNOG; arCOG00650; Archaea. DR eggNOG; COG2241; LUCA. DR HOGENOM; HOG000110274; -. DR KO; K03399; -. DR OMA; HSGYQFV; -. DR BioCyc; NMAR436308:GI3J-5-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008276; F:protein methyltransferase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.950.10; -; 1. DR Gene3D; 3.40.1010.10; -; 1. DR InterPro; IPR000878; 4pyrrol_Mease. DR InterPro; IPR014777; 4pyrrole_Mease_sub1. DR InterPro; IPR014776; 4pyrrole_Mease_sub2. DR InterPro; IPR012818; Cbl_synth_CbiE. DR Pfam; PF00590; TP_methylase; 1. DR SUPFAM; SSF53790; SSF53790; 1. DR TIGRFAMs; TIGR02467; CbiE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX11905.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11905.1}. FT DOMAIN 3 208 TP_methylase. {ECO:0000259|Pfam:PF00590}. SQ SEQUENCE 238 AA; 26987 MW; F5E0C84A6D5C7253 CRC64; MGKVIAVGVG PGSPKYVTEV VKDIVQNCDI VIGYKYTLKT IEHLLEGKEI HEITMNNQEE SYQEVFPRLG DKTLVIPFTG DVNFSESEVV DRLIEIFGEV EIVPGISSIQ VAASRAQVPL DKSRVITMHV TTPIEDKKLE LQKALIDGFS VVLVPRPWPK QPDKHFMPSE IAVYLRECGF DTTRIKVHVF EAITTENETS FEGTVKDLEG KEFSDLSVMV FNQTSLDSYM NYRWQWEN // ID A9A120_NITMS Unreviewed; 250 AA. AC A9A120; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:ABX11981.1}; GN OrderedLocusNames=Nmar_0081 {ECO:0000313|EMBL:ABX11981.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11981.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11981.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11981.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11981.1; -; Genomic_DNA. DR ProteinModelPortal; A9A120; -. DR STRING; 436308.Nmar_0081; -. DR EnsemblBacteria; ABX11981; ABX11981; Nmar_0081. DR KEGG; nmr:Nmar_0081; -. DR eggNOG; arCOG02246; Archaea. DR eggNOG; COG2138; LUCA. DR HOGENOM; HOG000110743; -. DR OMA; FLHEGAH; -. DR BioCyc; NMAR436308:GI3J-82-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016852; F:sirohydrochlorin cobaltochelatase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR InterPro; IPR002762; Cbl_biosynth_CbiX. DR Pfam; PF01903; CbiX; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 112 CbiX. {ECO:0000259|Pfam:PF01903}. FT DOMAIN 138 240 CbiX. {ECO:0000259|Pfam:PF01903}. SQ SEQUENCE 250 AA; 28554 MW; 51EBF2D34965C614 CRC64; MKRGLLIIDR GSREREASEE LETICTGIKA KGDYVFTDYC FLEVEPPYIE DGISKCLKED IDSLTIVPYF LYPGKKVKIA VTDVMKLQKD TQVKFLITKP MSMHKTLVDI VENRVTTTLK ENNITLPNTD VDVMIIGHGS KDPNAQMSLN YIVDELKNSY RNVSRCWLEI EQPDIFEGIK KCEKDEPKVL VIVFYFLHEG AHVKTDINND LIPALKDSNL KDTFITKHIG ADEKIIDLII ERAKEVEDAN // ID A9A1C0_NITMS Unreviewed; 177 AA. AC A9A1C0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABX12755.1}; GN OrderedLocusNames=Nmar_0859 {ECO:0000313|EMBL:ABX12755.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12755.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12755.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12755.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12755.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1C0; -. DR STRING; 436308.Nmar_0859; -. DR EnsemblBacteria; ABX12755; ABX12755; Nmar_0859. DR KEGG; nmr:Nmar_0859; -. DR eggNOG; arCOG04311; Archaea. DR eggNOG; COG1896; LUCA. DR HOGENOM; HOG000216981; -. DR KO; K07023; -. DR OMA; NIRHPEV; -. DR BioCyc; NMAR436308:GI3J-887-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 1.10.3210.10; -; 1. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR006674; HD_domain. DR Pfam; PF13023; HD_3; 1. DR SMART; SM00471; HDc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12755.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 28 143 HDc. {ECO:0000259|SMART:SM00471}. SQ SEQUENCE 177 AA; 20405 MW; F3D8A962BAA10C23 CRC64; MIEDFFHNVA NLKNISRQGW IDKLSIDNPE SVADHTFSMA IMGMIIADLE NLNSEKILKM ILLHDLAESK IGDIVPDKMS LEEKQKLENS AFDEIIKTLP ESLTHNYVEI WNEYQKNNTD ESSIVHQVDK LEMALQAKIY QSQGYSKDKL ETFFESAKSS ITHPKLKELF TKIIDEE // ID A9A1M4_NITMS Unreviewed; 340 AA. AC A9A1M4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ABX13539.1}; GN OrderedLocusNames=Nmar_1643 {ECO:0000313|EMBL:ABX13539.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13539.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13539.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13539.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13539.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1M4; -. DR STRING; 436308.Nmar_1643; -. DR EnsemblBacteria; ABX13539; ABX13539; Nmar_1643. DR KEGG; nmr:Nmar_1643; -. DR eggNOG; arCOG00434; Archaea. DR eggNOG; COG0714; LUCA. DR HOGENOM; HOG000236942; -. DR KO; K03924; -. DR OMA; QKHMVER; -. DR BioCyc; NMAR436308:GI3J-1688-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR011703; ATPase_AAA-3. DR InterPro; IPR016366; ATPase_chaperone_AAA_MoxR_prd. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF07726; AAA_3; 1. DR PIRSF; PIRSF002849; AAA_ATPase_chaperone_MoxR_prd; 1. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 61 190 AAA_3. {ECO:0000259|Pfam:PF07726}. SQ SEQUENCE 340 AA; 38303 MW; 3E267AE14C096BB1 CRC64; MALRENHVNY SVSNEDIKKL SEQAQKYAKK LNAVFEESHK VVIGQQDALQ KILISIIADG HVLLESVPGL AKTLMVKTMA QIFNVDHVRI QFTPDLLPAD ILGTKIYKNA SGSFVTQKGP IFHNFVLADE INRAPPKVQS ALLEAMQERN VSIHGDTFEL KKPFLVLATQ NPIENEGTYK LPEAQVDRFA LKILIDYPSK QEELEIIEKN SSEQEDKVNT IISPEEILEI QKFNEKIYAD KVVTEYIADI VNATRTPKDY DLDLENMIEF GASPRASIWL MRTAKANAML NGRGFIIPED VKAVAHEVLR HRIILTFEAE ANGITSDKVI DFVLEKINPP // ID A9A5I1_NITMS Unreviewed; 59 AA. AC A9A5I1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Ribosomal protein S14 {ECO:0000313|EMBL:ABX12692.1}; GN OrderedLocusNames=Nmar_0796 {ECO:0000313|EMBL:ABX12692.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12692.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12692.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12692.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12692.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I1; -. DR STRING; 436308.Nmar_0796; -. DR EnsemblBacteria; ABX12692; ABX12692; Nmar_0796. DR KEGG; nmr:Nmar_0796; -. DR eggNOG; arCOG00782; Archaea. DR eggNOG; COG0199; LUCA. DR HOGENOM; HOG000231300; -. DR KO; K02954; -. DR OMA; TAVIQKY; -. DR BioCyc; NMAR436308:GI3J-823-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR InterPro; IPR001209; Ribosomal_S14. DR InterPro; IPR018271; Ribosomal_S14_CS. DR Pfam; PF00253; Ribosomal_S14; 1. DR PROSITE; PS00527; RIBOSOMAL_S14; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12692.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX12692.1}. SQ SEQUENCE 59 AA; 7100 MW; 1A581B72E8985D41 CRC64; MAKDRSYEFT GRKKHDFGRG SRWCKRCGDY TAVIQKYDLM ICRRCFREVA TSLGFRKNR // ID A9A1D5_NITMS Unreviewed; 276 AA. AC A9A1D5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 51. DE SubName: Full=ABC transporter related {ECO:0000313|EMBL:ABX12770.1}; GN OrderedLocusNames=Nmar_0874 {ECO:0000313|EMBL:ABX12770.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12770.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12770.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12770.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12770.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1D5; -. DR STRING; 436308.Nmar_0874; -. DR EnsemblBacteria; ABX12770; ABX12770; Nmar_0874. DR KEGG; nmr:Nmar_0874; -. DR eggNOG; COG1135; LUCA. DR KO; K02041; -. DR OMA; MKVRKWP; -. DR BioCyc; NMAR436308:GI3J-902-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 21 264 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 276 AA; 30728 MW; ED37B3075C9953CF CRC64; MKQIQMTANP SFSSIATKKI IQMNDVWTSY DSKNFALDGI NLSIDRGTNY AIVGQSGSGK STLLKLMNGM MIPSKGTIKI DYITPNMNDK KFKKMMHTIG YIPQNLGLVK NSTVLENILI GALPRLGKIQ SFLKKFPENE IDEAKKIISQ VGLSGKEERK AYMLSGGEKR RVAIARALMQ HPTILLADEI VSELDHVTAR EIMDLIADAQ KNMNLTAIMV HHDMQLALEY ANRVAVIKEG QKILEIGVEG DTIVDFQTGD MSTEEIMEMY ADDAKK // ID A9A1L0_NITMS Unreviewed; 393 AA. AC A9A1L0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Pyruvate carboxyltransferase {ECO:0000313|EMBL:ABX13189.1}; GN OrderedLocusNames=Nmar_1293 {ECO:0000313|EMBL:ABX13189.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13189.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13189.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13189.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13189.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1L0; -. DR STRING; 436308.Nmar_1293; -. DR EnsemblBacteria; ABX13189; ABX13189; Nmar_1293. DR KEGG; nmr:Nmar_1293; -. DR eggNOG; arCOG02092; Archaea. DR eggNOG; COG0119; LUCA. DR HOGENOM; HOG000046861; -. DR KO; K01649; -. DR OMA; KAIQHRL; -. DR BioCyc; NMAR436308:GI3J-1326-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046912; F:transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; IEA:InterPro. DR GO; GO:0019752; P:carboxylic acid metabolic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR002034; AIPM/Hcit_synth_CS. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR000891; PYR_CT. DR Pfam; PF00682; HMGL-like; 1. DR PROSITE; PS00816; AIPM_HOMOCIT_SYNTH_2; 1. DR PROSITE; PS50991; PYR_CT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyruvate {ECO:0000313|EMBL:ABX13189.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13189.1}. FT DOMAIN 27 283 PYR_CT. {ECO:0000259|PROSITE:PS50991}. SQ SEQUENCE 393 AA; 43479 MW; 830885A81C8092CA CRC64; MATNSVMKDP NHYANLYNAY EKNPKKIRVL DSTLREGEQH PGVSFTNKQR IQIAWMLDYF GVDQIEISPV VSNDHKEATK TIIKQGLKAD IVSHGRALKE DIDVSLDCDA KWCAAYLGIS DIHLKDKLRI SREDAMERAV ETVEYAKSHG LKIRFTVEDG SRAEPEFLLK VCKAIEEAGV DRISLPDTVG ILRPIGMYNF VKKVRDSIDV PLDAHVHNDI GFAVANAFSA CDAGVDQIHT TIDGIGERTG IPPLAEVAVA LTYLYKSPND FRLDMLLDLS RLIEEYTTIK PYDSKPIVGS SAYKHKAGTH LAAILRNPAA YEPIPPRAVG NRRRIVFGEL AGKTGAAYLM SLLGLDKDDE SAKAVAAGLK GLRMGDLIEI PLEDRLEKII NDK // ID A9A3V3_NITMS Unreviewed; 92 AA. AC A9A3V3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13653.1}; GN OrderedLocusNames=Nmar_1757 {ECO:0000313|EMBL:ABX13653.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13653.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13653.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13653.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13653.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V3; -. DR STRING; 436308.Nmar_1757; -. DR EnsemblBacteria; ABX13653; ABX13653; Nmar_1757. DR KEGG; nmr:Nmar_1757; -. DR eggNOG; arCOG04111; Archaea. DR eggNOG; COG1761; LUCA. DR HOGENOM; HOG000109003; -. DR KO; K03056; -. DR OMA; WMRINSS; -. DR BioCyc; NMAR436308:GI3J-1804-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR InterPro; IPR009025; RBP11-like_dimer. DR SUPFAM; SSF55257; SSF55257; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 92 AA; 10334 MW; C0753A6885469105 CRC64; MNAQVISSEA KEINLSITET DIGILYLIQH ELLKESNIDF AGVIVKHPLT NECWMRINSS SKPLGEIKKA TDSAIKMADE FKQLFNSKLK VN // ID A9A4J5_NITMS Unreviewed; 134 AA. AC A9A4J5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12973.1}; GN OrderedLocusNames=Nmar_1077 {ECO:0000313|EMBL:ABX12973.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12973.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12973.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12973.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12973.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4J5; -. DR STRING; 436308.Nmar_1077; -. DR EnsemblBacteria; ABX12973; ABX12973; Nmar_1077. DR KEGG; nmr:Nmar_1077; -. DR eggNOG; arCOG10267; Archaea. DR eggNOG; ENOG41110EP; LUCA. DR OMA; MEIEGRA; -. DR BioCyc; NMAR436308:GI3J-1108-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.450.50; -; 1. DR InterPro; IPR009959; Cyclase_SnoaL-like_dom. DR InterPro; IPR032710; NTF2-like_dom. DR Pfam; PF13474; SnoaL_3; 1. DR SUPFAM; SSF54427; SSF54427; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 131 Cyclase_SnoaL-like_dom. FT {ECO:0000259|Pfam:PF13474}. SQ SEQUENCE 134 AA; 15154 MW; 99CD22FEE2786F9C CRC64; MSDSEEIIKV IEALFEAGIT KDTSVLKDIH LNDPKFSSFS DLPPYDLKDY QNTIELEELK FVSISDYSYE IKNPKISIFG DSAVVAMELN QKGMLVDTKA YTGEHMEIEG RATFVLVKQP TWKIAHIHLS KING // ID A9A1Q6_NITMS Unreviewed; 567 AA. AC A9A1Q6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Carbamoyltransferase {ECO:0000313|EMBL:ABX12027.1}; GN OrderedLocusNames=Nmar_0127 {ECO:0000313|EMBL:ABX12027.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12027.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12027.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12027.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12027.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Q6; -. DR STRING; 436308.Nmar_0127; -. DR EnsemblBacteria; ABX12027; ABX12027; Nmar_0127. DR KEGG; nmr:Nmar_0127; -. DR eggNOG; arCOG01188; Archaea. DR eggNOG; COG2192; LUCA. DR HOGENOM; HOG000268277; -. DR KO; K00612; -. DR OMA; NTSFNMH; -. DR BioCyc; NMAR436308:GI3J-130-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR InterPro; IPR031730; Carbam_trans_C. DR InterPro; IPR003696; Carbtransf_dom. DR Pfam; PF16861; Carbam_trans_C; 1. DR Pfam; PF02543; Carbam_trans_N; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12027.1}. FT DOMAIN 4 339 Carbam_trans_N. FT {ECO:0000259|Pfam:PF02543}. FT DOMAIN 400 567 Carbam_trans_C. FT {ECO:0000259|Pfam:PF16861}. SQ SEQUENCE 567 AA; 64762 MW; 74A14A9E7837EBF2 CRC64; MYNLGISCYY HDSAAALLKD GHVVAAVEEE RFSRKKFDDD FPNMAIEWCL NEADISPSEI HSVAFYDKPI LKFERLLDNY ITFAPRGLFS FINTIPKWLH KRLWIKNDIN KALNGFKGEI IFPDHHMSHA SHTFYTSQFD ESAILTVDGV GEWSTTSFGH ATDNSITLTH DIRWPNSLGL FYSAFTYFLG FQVNEGEYKL MGLASYGKPK YYDTILNNLI DVKDDGSIHL DMKYFAFTYD KVMTNQKFSK LFGINPRKKN EKTEQIHYDI GASVQKVLED ILLKMTHHVY EKTNSKNLCL GGGVALNGVA NYRILREGPF DNLHIPPSPG DAGSAIGCAQ YLYYIHHKKT RLIENDSSKI ISENAYVGPS YSNEQIVEFL DSMNISYEKL ECDELLKKTA RLISDGKIVG WYQGKMEWGP RALGCRSILA DPRKSEMKDV LNEKIKHRES FRPFAPSILE EYTSEYFEID RISPYMLFVA PVKKPQDIPA VTHVDGTGRL QTVNRDANPL YYNLILEFYK ITGVPVIINT SMNVMGEPIV NTPEQAYNMI TKTNMDFIVL GNNLVEK // ID A9A392_NITMS Unreviewed; 212 AA. AC A9A392; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12521.1}; GN OrderedLocusNames=Nmar_0625 {ECO:0000313|EMBL:ABX12521.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12521.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12521.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12521.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12521.1; -; Genomic_DNA. DR ProteinModelPortal; A9A392; -. DR STRING; 436308.Nmar_0625; -. DR EnsemblBacteria; ABX12521; ABX12521; Nmar_0625. DR KEGG; nmr:Nmar_0625; -. DR eggNOG; arCOG04472; Archaea. DR eggNOG; COG1920; LUCA. DR HOGENOM; HOG000108224; -. DR KO; K14941; -. DR OMA; THYDEDS; -. DR BioCyc; NMAR436308:GI3J-649-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR002835; Coenzyme_F420_CofC. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF01983; CofC; 1. DR SUPFAM; SSF53448; SSF53448; 1. DR TIGRFAMs; TIGR03552; F420_cofC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 212 AA; 24450 MW; 627465C274D88941 CRC64; MKIAAIIPVK TFSNAKTRLD LPPQKVEDLC KVMLEEILQT VSISPQIDKV VMVTKEEKAI EIGKKFKVHT IIDEKEESVN SAVALADKYL LENNFDASMV FPQDIPYIKT QDIDFMLNYK MHPNFAIIVP SRRFDGTNAL VRMPIDLMET HYDEDSYKIH MSTAKEHTLN VAMVFVKRIM WDVDNAEDLK FLLEQKEKPH VAEKIKQILE SP // ID A9A451_NITMS Unreviewed; 406 AA. AC A9A451; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12235.1}; GN OrderedLocusNames=Nmar_0339 {ECO:0000313|EMBL:ABX12235.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12235.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12235.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12235.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12235.1; -; Genomic_DNA. DR ProteinModelPortal; A9A451; -. DR STRING; 436308.Nmar_0339; -. DR EnsemblBacteria; ABX12235; ABX12235; Nmar_0339. DR KEGG; nmr:Nmar_0339; -. DR eggNOG; arCOG02701; Archaea. DR eggNOG; COG1641; LUCA. DR HOGENOM; HOG000007120; -. DR KO; K09121; -. DR OMA; VNIAPEY; -. DR BioCyc; NMAR436308:GI3J-354-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002822; UPF0272. DR Pfam; PF01969; DUF111; 1. DR TIGRFAMs; TIGR00299; TIGR00299; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 379 406 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 406 AA; 44451 MW; 5B962A4BA27361C7 CRC64; MVLVIDPQIA GISGDMLLSS LIDLGADKGK IIDGIKKSEQ FFSDSTITKI DFQKTKKRGI EAIQLVLEID EHSHEKKGSE IKKAINDSTS NLDLSDKAKI FAESCINSLI SSESKIHGVP EDSVHFHEAS SIDTLVDIVG ITIALDDLGL FDEKIICMPV SVGGGSVTFS HGTMSNPASA ILEIFKDSYL KIKGNDANAE LTTPTGACIL ANLTNTCMDY YPAMKIDSIG YGAGQKDFQN FSNVLKLVRG STNNLESDSV KILETNVDDI SGEILGNLIE KIMQKGARDV SIYHGITKKG RPTNLVSVIC DDQNIDEIVD TLVLETGTLG IRISESNRFV VPRTNENISL TIDGNSFDVR YKKSTFKGKT DFKIEFDDLK DISNTVEKSI KEIESLLRKE IEKLEN // ID A9A5U0_NITMS Unreviewed; 533 AA. AC A9A5U0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13095.1}; GN OrderedLocusNames=Nmar_1199 {ECO:0000313|EMBL:ABX13095.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13095.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13095.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13095.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13095.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5U0; -. DR STRING; 436308.Nmar_1199; -. DR EnsemblBacteria; ABX13095; ABX13095; Nmar_1199. DR KEGG; nmr:Nmar_1199; -. DR eggNOG; arCOG03564; Archaea. DR eggNOG; ENOG410Y6I5; LUCA. DR HOGENOM; HOG000106621; -. DR KO; K18235; -. DR OMA; IIINDFT; -. DR BioCyc; NMAR436308:GI3J-1232-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.120.10.30; -; 2. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 533 AA; 59096 MW; F79A1D75F9520280 CRC64; MKKRTKGILA FVFLGGIMVT SGVTIAIPGL SPDEESPEMT ITGTPADNFP DAERPRFCGS GDAQSTNFVT EYSIPTECTN PLAVVTDYDG NVWFAQTNTG KLSKFDPNTE SFTEYENPTW PKNQRSMMWG IDYAPDGSVW FTDETFDSIW KFNTFDEKYD RIGYPSADDS LPQRLQIDGS RIIINDFTGN KLTFFDITQS SGDVEYISLP SPVDNSVTAD FTLDEDGNVW YTNWLFQQGG VLVKFDYDGY RNEVQESGQE FFAGEMFTEI YQLPVTLLTP NGAVFDDGKI WLADTTSSSF FSFDPITEEF VQYVTADPLL STYGNQTGVI KSPISRPYWI DSDEQGRIIF NEQNANNISV FDPKSNSLVE YHVPSKNPYW GDCDPGTGLM LADCGLAQIF DFAVDGEKIW FTQWVENNIG VVDTSVPLPV EIQLESEMIS LSPGDSKHFN FIVSPKSNNT LGGSLILTSS HDFLSVELSH DSPDSFQLVS GTSQPIHTNI SASGDAIPGK YNVLIGIQLS DIAVSKYVTV TVE // ID A9A1Q1_NITMS Unreviewed; 240 AA. AC A9A1Q1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX13566.1}; GN OrderedLocusNames=Nmar_1670 {ECO:0000313|EMBL:ABX13566.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13566.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13566.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13566.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13566.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Q1; -. DR STRING; 436308.Nmar_1670; -. DR EnsemblBacteria; ABX13566; ABX13566; Nmar_1670. DR KEGG; nmr:Nmar_1670; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000106554; -. DR OMA; SECADEQ; -. DR BioCyc; NMAR436308:GI3J-1715-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 28 236 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 240 AA; 27560 MW; 12541F4C2BC73A97 CRC64; MDIIDIVKNN KTTLIASIVL VIAIALYFTE IQAKNNSDLG ETNSLDAKIL PETEISKDDD PLLGNPDAPI SIIEFSDYQC PFCARFYTQT LPTLESEYIE KGKVNFIYRD FPIQNHPNAR PAALASECAD EQEQFWEYHD ILFKKQDMWK RLDLDTVTST FKEYAEELNL NQEMFDSCLD SEKYSDEVDS DFADGRSYKI SGTPTFFIGN EETGYSSVFG AKSFYEFQEI IEEKLDKLEK // ID A9A354_NITMS Unreviewed; 110 AA. AC A9A354; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ABX12483.1}; GN OrderedLocusNames=Nmar_0587 {ECO:0000313|EMBL:ABX12483.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12483.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12483.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12483.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12483.1; -; Genomic_DNA. DR ProteinModelPortal; A9A354; -. DR STRING; 436308.Nmar_0587; -. DR EnsemblBacteria; ABX12483; ABX12483; Nmar_0587. DR KEGG; nmr:Nmar_0587; -. DR eggNOG; arCOG02305; Archaea. DR eggNOG; COG0347; LUCA. DR HOGENOM; HOG000017847; -. DR KO; K04751; -. DR BioCyc; NMAR436308:GI3J-610-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030234; F:enzyme regulator activity; IEA:InterPro. DR GO; GO:0006808; P:regulation of nitrogen utilization; IEA:InterPro. DR Gene3D; 3.30.70.120; -; 1. DR InterPro; IPR002187; N-reg_PII. DR InterPro; IPR011322; N-reg_PII-like_a/b. DR InterPro; IPR015867; N-reg_PII/ATP_PRibTrfase_C. DR Pfam; PF00543; P-II; 1. DR PRINTS; PR00340; PIIGLNB. DR SMART; SM00938; P-II; 1. DR SUPFAM; SSF54913; SSF54913; 1. DR PROSITE; PS51343; PII_GLNB_DOM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 110 AA; 12082 MW; 59491E09B1C49E74 CRC64; MLKIEAILGE NDVMAISEEL KKIGIGGLTV TKVRGRGKRP APEIHASKGS EIFVPQFTEK YFITAIIPDA REDEVVKIIK DNGRIGKIFV SQVLRAVDIA TDTEGEETVM // ID A9A3M4_NITMS Unreviewed; 303 AA. AC A9A3M4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE RecName: Full=Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; DE Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224}; DE Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224}; DE Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224}; DE EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224}; GN Name=pyrD {ECO:0000256|HAMAP-Rule:MF_00224}; GN OrderedLocusNames=Nmar_1390 {ECO:0000313|EMBL:ABX13286.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13286.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13286.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13286.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of dihydroorotate to orotate. CC {ECO:0000256|HAMAP-Rule:MF_00224}. CC -!- CATALYTIC ACTIVITY: (S)-dihydroorotate + acceptor = orotate + CC reduced acceptor. {ECO:0000256|HAMAP-Rule:MF_00224}. CC -!- COFACTOR: CC Name=FMN; Xref=ChEBI:CHEBI:58210; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00224}; CC Note=Binds 1 FMN per subunit. {ECO:0000256|HAMAP-Rule:MF_00224}; CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway. {ECO:0000256|HAMAP-Rule:MF_00224}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00224}. CC -!- SIMILARITY: Belongs to the dihydroorotate dehydrogenase family. CC Type 1 subfamily. {ECO:0000256|HAMAP-Rule:MF_00224}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13286.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M4; -. DR STRING; 436308.Nmar_1390; -. DR EnsemblBacteria; ABX13286; ABX13286; Nmar_1390. DR KEGG; nmr:Nmar_1390; -. DR eggNOG; arCOG00603; Archaea. DR eggNOG; COG0167; LUCA. DR HOGENOM; HOG000225105; -. DR KO; K17828; -. DR OMA; EMMIAGA; -. DR BioCyc; NMAR436308:GI3J-1425-MONOMER; -. DR UniPathway; UPA00070; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004152; F:dihydroorotate dehydrogenase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00224; DHO_dh_type1; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR005720; Dihydroorotate_DH. DR InterPro; IPR024920; Dihydroorotate_DH_1. DR InterPro; IPR012135; Dihydroorotate_DH_1_2. DR InterPro; IPR001295; Dihydroorotate_DH_CS. DR Pfam; PF01180; DHO_dh; 1. DR PIRSF; PIRSF000164; DHO_oxidase; 1. DR TIGRFAMs; TIGR01037; pyrD_sub1_fam; 1. DR PROSITE; PS00912; DHODEHASE_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00224}; KW Flavoprotein {ECO:0000256|HAMAP-Rule:MF_00224}; KW FMN {ECO:0000256|HAMAP-Rule:MF_00224}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00224}; KW Pyrimidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00224}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 285 DHO_dh. {ECO:0000259|Pfam:PF01180}. FT NP_BIND 46 47 FMN. {ECO:0000256|HAMAP-Rule:MF_00224}. FT NP_BIND 241 242 FMN. {ECO:0000256|HAMAP-Rule:MF_00224}. FT NP_BIND 263 264 FMN. {ECO:0000256|HAMAP-Rule:MF_00224}. FT REGION 71 75 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00224}. FT REGION 190 191 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00224}. FT ACT_SITE 128 128 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00224}. FT BINDING 22 22 FMN. {ECO:0000256|HAMAP-Rule:MF_00224}. FT BINDING 46 46 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00224}. FT BINDING 125 125 FMN. {ECO:0000256|HAMAP-Rule:MF_00224}. FT BINDING 125 125 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00224}. FT BINDING 163 163 FMN. {ECO:0000256|HAMAP-Rule:MF_00224}. FT BINDING 189 189 FMN; via carbonyl oxygen. FT {ECO:0000256|HAMAP-Rule:MF_00224}. FT BINDING 215 215 FMN; via amide nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_00224}. SQ SEQUENCE 303 AA; 32454 MW; 4A99F157B76AE3F4 CRC64; MEPNLATSIG PIQLDRPVML ASGILGISLD VFSRLYRSGA GAVVTKSLST EPWEGYPNPT IFSVKGGGWI NAVGLSNPGA ENFAKMIEPN QDVPIIVSLV GSIPEDFEKM IKQFENCKVT AYELNLSCPH VAKVGLEVGD DPELVKKIVT TVKNSTNVPV IAKVGLGTTH YLNTVGTAIE SGIDAITAIN TVRSMAIDVE TQRPILSNKF GGLSGTPIKP IALRCVYEIS SKYDIPIIGC GGISTWEDAV EFFLAGASSV QLGSAIGDNW IDVFNEINTG ILQYMEKKNY SKIEEMIGLA KKS // ID A9A3B4_NITMS Unreviewed; 237 AA. AC A9A3B4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12543.1}; GN OrderedLocusNames=Nmar_0647 {ECO:0000313|EMBL:ABX12543.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12543.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12543.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12543.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12543.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3B4; -. DR STRING; 436308.Nmar_0647; -. DR EnsemblBacteria; ABX12543; ABX12543; Nmar_0647. DR KEGG; nmr:Nmar_0647; -. DR eggNOG; arCOG00347; Archaea. DR eggNOG; COG1938; LUCA. DR HOGENOM; HOG000106104; -. DR KO; K06869; -. DR OMA; HKEMART; -. DR BioCyc; NMAR436308:GI3J-672-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR019151; Proteasome_assmbl_chaperone_2. DR Pfam; PF09754; PAC2; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 207 234 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 237 AA; 25719 MW; E113F2F23A7EA9C4 CRC64; MYPKIRIKEF KPLNLEGGYL IDGFPSAGFS SAIASESMVH TSKFKLAGII DSDIFPPISV IKDGKPNYPS RIFVNEESKV SVFLSYLTLD QSLHKVTAKT MLNWAQKHKI GLVVSSIAVK SPNENEELIG IGSTDSAREK IRSAGLKVLE FGTVPGIPGT LLNVASITGQ DVIVIIFHTN GEGPDFKSSA KLCMAISKLI PGSSCDISAL QKEAEKAETV IKEAEEESKH LKDSMYM // ID A9A1C4_NITMS Unreviewed; 407 AA. AC A9A1C4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=LOR/SDH bifunctional protein conserved domain protein {ECO:0000313|EMBL:ABX12759.1}; GN OrderedLocusNames=Nmar_0863 {ECO:0000313|EMBL:ABX12759.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12759.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12759.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12759.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12759.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1C4; -. DR STRING; 436308.Nmar_0863; -. DR EnsemblBacteria; ABX12759; ABX12759; Nmar_0863. DR KEGG; nmr:Nmar_0863; -. DR eggNOG; arCOG04422; Archaea. DR eggNOG; COG1915; LUCA. DR HOGENOM; HOG000224383; -. DR OMA; NMMMDKC; -. DR BioCyc; NMAR436308:GI3J-891-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR005239; CHP00300. DR InterPro; IPR007545; LOR/SDH_bifunc_enz_cons_dom. DR Pfam; PF04455; Saccharop_dh_N; 1. DR TIGRFAMs; TIGR00300; TIGR00300; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 103 Saccharop_dh_N. FT {ECO:0000259|Pfam:PF04455}. SQ SEQUENCE 407 AA; 45014 MW; 70597D2B7BBE5347 CRC64; MSKFSQEIEV SGHLIDSLIL TKIFDKIMDL QGEFQVQEIN IGKRKKDQSY ARLLVKGKNQ KHLDEILQTI YREGAVSKVQ KEITLKKSPK NYVMPDNFYS TTNNHTQVFH KGKWIQVENM MMDKCIVVKG NRAFCVPVRD VKKGDQIIVG EGGVKINPPE RPREGSNVFE FMGSSSSSER PTQHIAKKVA DDIYNTKKKD GKIVIVGGPA IVHTGASDAV SELIRSGYID GVLAGNALAV HDIEYATIGT SLGMNVHDAT LAYHGHRNHM DAINSVFKAG SIANMVKTKK LTKGIMYECV KNKVPFVLAG SIRDDGPLPD VITDVAQAQR EYKKVLKDAK MVIMISTMLH SIATGNMLPA NVKVIVVDIN QPTVTKLMDR GTWQALGIVS DVGAFLPMVA QQIRKKK // ID A9A529_NITMS Unreviewed; 185 AA. AC A9A529; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE RecName: Full=GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; DE EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223}; DE AltName: Full=GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; GN Name=folE {ECO:0000256|HAMAP-Rule:MF_00223}; GN OrderedLocusNames=Nmar_0038 {ECO:0000313|EMBL:ABX11938.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11938.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11938.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11938.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: GTP + H(2)O = formate + 2-amino-4-hydroxy-6- CC (erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate. CC {ECO:0000256|HAMAP-Rule:MF_00223}. CC -!- PATHWAY: Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate CC biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step CC 1/1. {ECO:0000256|HAMAP-Rule:MF_00223}. CC -!- SUBUNIT: Homopolymer. {ECO:0000256|HAMAP-Rule:MF_00223}. CC -!- SIMILARITY: Belongs to the GTP cyclohydrolase I family. CC {ECO:0000256|HAMAP-Rule:MF_00223}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11938.1; -; Genomic_DNA. DR ProteinModelPortal; A9A529; -. DR STRING; 436308.Nmar_0038; -. DR EnsemblBacteria; ABX11938; ABX11938; Nmar_0038. DR KEGG; nmr:Nmar_0038; -. DR eggNOG; arCOG04542; Archaea. DR eggNOG; COG0302; LUCA. DR HOGENOM; HOG000221222; -. DR KO; K01495; -. DR OMA; HMCVSSR; -. DR BioCyc; NMAR436308:GI3J-38-MONOMER; -. DR UniPathway; UPA00848; UER00151. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003934; F:GTP cyclohydrolase I activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0035998; P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0046654; P:tetrahydrofolate biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00223; FolE; 1. DR InterPro; IPR001474; GTP_CycHdrlase_I. DR InterPro; IPR018234; GTP_CycHdrlase_I_CS. DR InterPro; IPR020602; GTP_CycHdrlase_I_dom. DR PANTHER; PTHR11109; PTHR11109; 1. DR Pfam; PF01227; GTP_cyclohydroI; 1. DR TIGRFAMs; TIGR00063; folE; 1. DR PROSITE; PS00859; GTP_CYCLOHYDROL_1_1; 1. DR PROSITE; PS00860; GTP_CYCLOHYDROL_1_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW GTP-binding {ECO:0000256|HAMAP-Rule:MF_00223}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00223, KW ECO:0000313|EMBL:ABX11938.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00223}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00223}; KW One-carbon metabolism {ECO:0000256|HAMAP-Rule:MF_00223}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00223}. FT DOMAIN 7 176 GTP_cyclohydroI. FT {ECO:0000259|Pfam:PF01227}. FT METAL 72 72 Zinc. {ECO:0000256|HAMAP-Rule:MF_00223}. FT METAL 75 75 Zinc. {ECO:0000256|HAMAP-Rule:MF_00223}. FT METAL 142 142 Zinc. {ECO:0000256|HAMAP-Rule:MF_00223}. SQ SEQUENCE 185 AA; 21263 MW; 4A029DFDCE5FB745 CRC64; MDEERVKKLV RELIIEVGED PTREGLRETP ERIANMYQEI FSGYDSDSEL AVQFSEDSDV VVARDIQFYS MCEHHMLPFF GKIHIAYSPN GRVFGISKLV RLVEKYSKRL QIQERLTKNI ADELYSQGVK GVVVLADAEH LCMKMRGVRN DATLSSSAFR GIYENKEDKE SIMTLIRKRA SDSAY // ID A9A1P7_NITMS Unreviewed; 344 AA. AC A9A1P7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Kelch repeat protein {ECO:0000313|EMBL:ABX13562.1}; GN OrderedLocusNames=Nmar_1666 {ECO:0000313|EMBL:ABX13562.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13562.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13562.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13562.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13562.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1P7; -. DR STRING; 436308.Nmar_1666; -. DR EnsemblBacteria; ABX13562; ABX13562; Nmar_1666. DR KEGG; nmr:Nmar_1666; -. DR eggNOG; arCOG07536; Archaea. DR eggNOG; ENOG410Z96I; LUCA. DR HOGENOM; HOG000023847; -. DR OMA; AVESHIF; -. DR BioCyc; NMAR436308:GI3J-1711-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.120.10.80; -; 2. DR InterPro; IPR015915; Kelch-typ_b-propeller. DR InterPro; IPR006652; Kelch_1. DR InterPro; IPR027560; PEFG-CTERM. DR Pfam; PF01344; Kelch_1; 3. DR SMART; SM00612; Kelch; 5. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 312 330 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 344 AA; 38116 MW; 24675E6F2499D542 CRC64; MKIAIFFLIL LSFTTPNIFA EEPLEGWERL SNLPEPRSES KAIAYEDKIY VIGGLNNKEL AENSVFVYDT NEDVWSISTS MPSMLHHSGA SIYEGKLYVV GGYYDKWIPS DELLIYDIDA DVWSKGTNMP TARGALTAEF LDGKLYAVGG FNTETRFENE VYDPVTDSWE KKSDLPTPRE HLASAVLDSQ MYVIGGRSGQ LNVDATEVYD FTADSWESLE PIPTARSGLA ASAMNEAIFV FGGEGYTNTF GENEAYIPEK GWFEQQPMPI PRHGLDAVTV DGNIYLIGGG IAPGASYSPI VEKYHNTVIP EFGFFVVLVF TLSIGLTILF TKSKFSLFTN VSKN // ID A9A3M1_NITMS Unreviewed; 60 AA. AC A9A3M1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13283.1}; GN OrderedLocusNames=Nmar_1387 {ECO:0000313|EMBL:ABX13283.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13283.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13283.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13283.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13283.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1387; -. DR EnsemblBacteria; ABX13283; ABX13283; Nmar_1387. DR KEGG; nmr:Nmar_1387; -. DR eggNOG; arCOG04293; Archaea. DR eggNOG; COG4919; LUCA. DR HOGENOM; HOG000106709; -. DR KO; K02983; -. DR OMA; NKPGQRR; -. DR BioCyc; NMAR436308:GI3J-1422-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR InterPro; IPR006846; Ribosomal_S30. DR Pfam; PF04758; Ribosomal_S30; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 60 AA; 6749 MW; 73B44B10EC257DC1 CRC64; MATHGSLTKA GKVRGQTPKV EGRKIVGTNS SLRNKSNFKK RFVLGRFPGQ NKPGQRRKRR // ID A9A5V2_NITMS Unreviewed; 184 AA. AC A9A5V2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13107.1}; GN OrderedLocusNames=Nmar_1211 {ECO:0000313|EMBL:ABX13107.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13107.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13107.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13107.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13107.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1211; -. DR EnsemblBacteria; ABX13107; ABX13107; Nmar_1211. DR KEGG; nmr:Nmar_1211; -. DR eggNOG; arCOG00725; Archaea. DR eggNOG; COG3465; LUCA. DR KO; K09388; -. DR OMA; YYYGPYS; -. DR BioCyc; NMAR436308:GI3J-1244-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 184 AA; 21005 MW; F896AB359B99523E CRC64; MDVYETVESI LDSNNGEIVG RTAIHKLVYL SNKTIEGLTL PVYKPHYYGP YSPELSLALE KMVTYSFIDE IKIPGKMHEG YKYRLTPDGQ DMANHVKSTF PTEYQKIKYL VSTCDKFCKL KTAPLSYAAK MYFMLENNPD KEKVMDYDDA IKTAEKLGWE LTPDDVSQGV GLLKELKLVN IVKN // ID A9A2M0_NITMS Unreviewed; 486 AA. AC A9A2M0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13259.1}; GN OrderedLocusNames=Nmar_1363 {ECO:0000313|EMBL:ABX13259.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13259.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13259.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13259.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13259.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13259; ABX13259; Nmar_1363. DR KEGG; nmr:Nmar_1363; -. DR BioCyc; NMAR436308:GI3J-1397-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 70 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 486 AA; 56193 MW; 617E5440F370FBB1 CRC64; MPCCNTKKFW TVVMQLEFNL VLDICIQMTL ILLPTVRVNG KQWKNMKMKT KFLIITCIAL GLGVFTLAYA QSQEFSSSGR DYVPYTENYN VSFTHDGKID YDLLIAKIMP EIFQKNLRIE HDVYISVEDI VLNRGPQRAI YQESSYNCGY VIDYADNQVY WLEAAINSTD IQYTKIFTET PTPESIHGHV VDESNYGWCF GPLKQQVAAI FLEEKSYFAD DQEAFVAAAI KHELRGNPNL NNQEFTVGKF NFDYGENVVS FCGEFQKPKA GLKYFGGSLK NNVLTDFHLD DKLSPLCAMG DDAKIHSIKV NQKSDVPPDL QAWKNLRMET VFLKQNSIEK LLERNYMFPE TMRYNIFEYS APFTINLIEF VPEDSNTIWN FEPTAYDTFA KIRVPENGGN YYMMYGPNDW NQGDLLSVLI LVDGIEVDYK EQPFIRAPDA PYPQHHTDYI FKVPTDSSSI EMVLFIENYV PEKVDDDEYQ YYTPRN // ID A9A3B8_NITMS Unreviewed; 1174 AA. AC A9A3B8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=SMC domain protein {ECO:0000313|EMBL:ABX12547.1}; GN OrderedLocusNames=Nmar_0651 {ECO:0000313|EMBL:ABX12547.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12547.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12547.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12547.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12547.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3B8; -. DR STRING; 436308.Nmar_0651; -. DR EnsemblBacteria; ABX12547; ABX12547; Nmar_0651. DR KEGG; nmr:Nmar_0651; -. DR eggNOG; arCOG00371; Archaea. DR eggNOG; COG1196; LUCA. DR HOGENOM; HOG000106093; -. DR KO; K03529; -. DR OMA; EYEERVS; -. DR BioCyc; NMAR436308:GI3J-676-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0051276; P:chromosome organization; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 4. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR003395; RecF/RecN/SMC_N. DR InterPro; IPR024704; SMC. DR InterPro; IPR010935; SMC_hinge. DR Pfam; PF06470; SMC_hinge; 1. DR Pfam; PF02463; SMC_N; 2. DR PIRSF; PIRSF005719; SMC; 1. DR SMART; SM00968; SMC_hinge; 1. DR SUPFAM; SSF52540; SSF52540; 4. DR SUPFAM; SSF75553; SSF75553; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 525 638 SMC_hinge. {ECO:0000259|SMART:SM00968}. FT COILED 183 217 {ECO:0000256|SAM:Coils}. FT COILED 313 340 {ECO:0000256|SAM:Coils}. FT COILED 390 424 {ECO:0000256|SAM:Coils}. FT COILED 432 480 {ECO:0000256|SAM:Coils}. FT COILED 839 883 {ECO:0000256|SAM:Coils}. FT COILED 895 936 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 1174 AA; 133187 MW; A55EF202055CE82B CRC64; MVHVKKVEIF GFKSFGFKNT TVQFEPGLVS ISGPNGSGKS NILDAIIFAM GENKPKVMRV DKLRSLIHDI EGNRRGPKMA RSSVHFDNSD RKIPVDSDNV EITREMDANG ENTYYLNKKK TNRSHILDLL DMANAGLGQL NAVQQGTVTR ISEFTSEEKR KTIEDLIGLS YFDEKKAESV KQLDEADRRL EIALAKMGEI KKRIDELEEE RNQKLRYDIL ERELNRYKAI AAANKLKVIS SQKESKESTL HSVTAEITTF DDERSILRTE IGTLESEKSK LMAEANDYTQ AKSALDTEIA TAMEQYEIDN SAISASKKRI EQIESRIPEI QKELEDVDSA RSDIDTQILK IKESIEQTNV KKNKINSDLE IVDSQRNKIL DEQSQAAAKK SEIDQKIKEL TTQLNDAKLK LSKLQHEKEE SKIKVESNTA KLQGLEQGIE ELTSSKTKLE SMIKNHNATI TELKSRIQKL QSKKSKIVSD MDEWGEILEK SNQAATRYES KIKTVKGFMH EDYTVAKLKE DAEQLGIEGL VYEMISWDKQ YERSILAVSS DWIKAIVVKD FATLLGIAEF ARSRKLSKLK IIPMDSIPKF KLKLPTDSGV IGVLSDFVRC KPAYAELKTF LFGNIILTET RESAYNVSQS GYKAVTMDGE YFEAKGGTVV IDIDSKISKL TKLISMSSDV DGLFQSINAV KKYLLLKKNA IKKLDDSIQL NSERLSISEQ SLASTNEHYS TLTPRIESAL NMKEQITTRI ADLTSRDQNI ESEVLTNESH VESLLERISI VEENYASGEQ ARIANELSRI NAKKAEVEKL YTTITNEYRD KASQLTTLET QDNREKSQSN RLHDEERSLS LEKEELQSKI NELEVQKESK NEVLVKLREK EQELIETSGS SIGQLKEFDD KLKVLSEKDR ELTKQINTLE RQSDSLNRDL RDLVENETKL QQILSAFGFD KDMETFDVES IVQGLSAELA SLNALNAKAP ETYLEVSYGY RSMSTRKNSL EEERNSIVKF IEDIEKDKRQ TFLDAFDKVD KEIKLIFNKM TGGNAWLELQ NEDDIFNSGI SYLIQFPNKP KRESTSISGG EKTLAAIVFV LALQKLKPSP FYLFDEVDAH LDAPNSERLS NILEERAKES QFIMVSLKDS VVQKAKLIYG VFPKNGVSNV VTYKDKRMPS VRTS // ID A9A251_NITMS Unreviewed; 133 AA. AC A9A251; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Putative signal-transduction protein with CBS domains {ECO:0000313|EMBL:ABX12464.1}; GN OrderedLocusNames=Nmar_0568 {ECO:0000313|EMBL:ABX12464.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12464.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12464.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12464.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12464.1; -; Genomic_DNA. DR ProteinModelPortal; A9A251; -. DR STRING; 436308.Nmar_0568; -. DR EnsemblBacteria; ABX12464; ABX12464; Nmar_0568. DR KEGG; nmr:Nmar_0568; -. DR eggNOG; arCOG00606; Archaea. DR eggNOG; COG0517; LUCA. DR HOGENOM; HOG000187907; -. DR OMA; HDLRIRQ; -. DR BioCyc; NMAR436308:GI3J-591-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 2. DR SMART; SM00116; CBS; 2. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 74 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 82 133 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 133 AA; 14152 MW; 3E50EF0D310920AB CRC64; MVSREDFNSS SIKVQDIMTR ALITVNPNTT ALQVAKMMEQ GGIGAVIVKD GDDLVGIVTD RDYATKIAAN NLPFDTTVEK IMSSPLITIN QGEPISAAAE TMASKKIRKL AVSDNGNITG IITSTDLVNQ LAK // ID A9A245_NITMS Unreviewed; 141 AA. AC A9A245; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12458.1}; GN OrderedLocusNames=Nmar_0562 {ECO:0000313|EMBL:ABX12458.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12458.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12458.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12458.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12458.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0562; -. DR EnsemblBacteria; ABX12458; ABX12458; Nmar_0562. DR KEGG; nmr:Nmar_0562; -. DR BioCyc; NMAR436308:GI3J-584-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 141 AA; 16366 MW; E7160094C6F2047E CRC64; MTSADEISSM FDAESKKFEN FLSNVSDDMG ISEIIETYYQ VMNVTSMISM LKQQLDSENH KTLLEHIKKT EQLISGKFNK ETHPKILENL SKSIQDMTKT LQSNPDEKTK EQIENESQMF EELRKKISTK EFVEQYDKGL A // ID A9A5N1_NITMS Unreviewed; 380 AA. AC A9A5N1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; DE Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; DE EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; DE AltName: Full=5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; GN Name=purK {ECO:0000256|HAMAP-Rule:MF_01928, GN ECO:0000256|RuleBase:RU361200}; GN OrderedLocusNames=Nmar_0846 {ECO:0000313|EMBL:ABX12742.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12742.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12742.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12742.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the ATP-dependent conversion of 5- CC aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- CC carboxyaminoimidazole ribonucleotide (N5-CAIR). CC {ECO:0000256|HAMAP-Rule:MF_01928}. CC -!- FUNCTION: Catalyzes the ATP-dependent conversion of 5- CC aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5- CC carboxyaminoimidazole ribonucleotide (N5-CAIR). CC {ECO:0000256|RuleBase:RU361200}. CC -!- CATALYTIC ACTIVITY: ATP + 5-amino-1-(5-phospho-D-ribosyl)imidazole CC + HCO(3)(-) = ADP + phosphate + 5-carboxyamino-1-(5-phospho-D- CC ribosyl)imidazole. {ECO:0000256|HAMAP-Rule:MF_01928, CC ECO:0000256|RuleBase:RU361200}. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5- CC amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 1/2. CC {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01928}. CC -!- SIMILARITY: Belongs to the PurK/PurT family. {ECO:0000256|HAMAP- CC Rule:MF_01928, ECO:0000256|RuleBase:RU361200}. CC -!- SIMILARITY: Contains 1 ATP-grasp domain. {ECO:0000256|HAMAP- CC Rule:MF_01928}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12742.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N1; -. DR STRING; 436308.Nmar_0846; -. DR EnsemblBacteria; ABX12742; ABX12742; Nmar_0846. DR KEGG; nmr:Nmar_0846; -. DR eggNOG; arCOG01597; Archaea. DR eggNOG; COG0026; LUCA. DR HOGENOM; HOG000034028; -. DR KO; K01589; -. DR OMA; DSPCGQV; -. DR BioCyc; NMAR436308:GI3J-873-MONOMER; -. DR UniPathway; UPA00074; UER00942. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0034028; F:5-(carboxyamino)imidazole ribonucleotide synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0004638; F:phosphoribosylaminoimidazole carboxylase activity; IEA:InterPro. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.20; -; 1. DR HAMAP; MF_01928; PurK; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR003135; ATP-grasp_carboxylate-amine. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR016185; PreATP-grasp_dom. DR InterPro; IPR005875; PurK. DR InterPro; IPR011054; Rudment_hybrid_motif. DR Pfam; PF02222; ATP-grasp; 1. DR SUPFAM; SSF51246; SSF51246; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR TIGRFAMs; TIGR01161; purK; 1. DR PROSITE; PS50975; ATP_GRASP; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01928, KW ECO:0000256|RuleBase:RU361200}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_01928, KW ECO:0000256|RuleBase:RU361200}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01928, KW ECO:0000256|RuleBase:RU361200}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01928, KW ECO:0000256|RuleBase:RU361200}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 108 294 ATP-grasp. {ECO:0000256|HAMAP- FT Rule:MF_01928, FT ECO:0000259|PROSITE:PS50975}. FT NP_BIND 179 182 ATP. {ECO:0000256|HAMAP-Rule:MF_01928}. FT NP_BIND 264 265 ATP. {ECO:0000256|HAMAP-Rule:MF_01928}. FT BINDING 104 104 ATP. {ECO:0000256|HAMAP-Rule:MF_01928}. FT BINDING 144 144 ATP. {ECO:0000256|HAMAP-Rule:MF_01928}. FT BINDING 187 187 ATP. {ECO:0000256|HAMAP-Rule:MF_01928}. FT BINDING 210 210 ATP. {ECO:0000256|HAMAP-Rule:MF_01928}. SQ SEQUENCE 380 AA; 42608 MW; 35D0BCE876F63B9B CRC64; MTKILGIIGG GQLGMMIAEA AKKMPENVSK IIVLDPTENC PAAQVGAEQI VADFKDKNAI IELSEKSDII TYEIESGDSE VLKSVEKNAE INPSPETLHT IQDKFLQKTF LKEHGIPVPE FIEISNIDDV KEGLKKFGYP ALLKARRDAY DGRGNFKVDS EDMVQTAYDY FKDQKLMLEK FVPFKMEVSV IAARNTKGEI KTFPLVENIH EENILRETIA PARVSEEITK NAEKIASQTM DVLKGAGVFG IEMFVTRDDQ IVINEIAPRV HNSGHHTLES SETSQFEQHL RAILGLDLGS TKLLRPTIMY NILGTKTFEG EYKPLEIPEE NLFLKMYGKK ISKPMRKLGH FNLISTNNES VEDLLKKLES IKPRAAVQSI // ID A9A3U4_NITMS Unreviewed; 332 AA. AC A9A3U4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13356.1}; GN OrderedLocusNames=Nmar_1460 {ECO:0000313|EMBL:ABX13356.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13356.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13356.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13356.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13356.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1460; -. DR EnsemblBacteria; ABX13356; ABX13356; Nmar_1460. DR KEGG; nmr:Nmar_1460; -. DR BioCyc; NMAR436308:GI3J-1497-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 332 AA; 39028 MW; BE90974E0B899281 CRC64; MKTRFLIIIG VIMMTTIPFV TFAALDRYEN YLEQLEYERQ RIENEPKPGE RSYIEPELKA KLEGIELDLR KKVRQLHEDL PPSSYAVNLN HQTKEIEAVI ENKELIPIIK EFTKKYPDDV AIIVEYGKIS IDGFNFRPND DVDVKSKEYI ANCDETIHKE KLPDLIIENS THNYDMQYCK WELKYPDLTL ISDKNLLNNY PYCAELFDTL FEYYQSIRDP CGMQRYNEDG TPRGICEPAP AGAGVPYDLN MIKSGCAFSF EEWAYQTNHN DDVFYLFDRA EINTKIHDNL DEYVPVIDKL CNDNDYLNVK PNIKFRNNTH WIDTDHCTLN RK // ID A9A1H6_NITMS Unreviewed; 470 AA. AC A9A1H6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13155.1}; GN OrderedLocusNames=Nmar_1259 {ECO:0000313|EMBL:ABX13155.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13155.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13155.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13155.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13155.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1H6; -. DR STRING; 436308.Nmar_1259; -. DR EnsemblBacteria; ABX13155; ABX13155; Nmar_1259. DR KEGG; nmr:Nmar_1259; -. DR eggNOG; arCOG03914; Archaea. DR eggNOG; COG2132; LUCA. DR HOGENOM; HOG000023842; -. DR KO; K00368; -. DR BioCyc; NMAR436308:GI3J-1292-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0050421; F:nitrite reductase (NO-forming) activity; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 3. DR InterPro; IPR011707; Cu-oxidase_3. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR001287; NO2-reductase_Cu. DR Pfam; PF07732; Cu-oxidase_3; 1. DR PRINTS; PR00695; CUNO2RDTASE. DR SUPFAM; SSF49503; SSF49503; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 92 199 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07732}. SQ SEQUENCE 470 AA; 50958 MW; ED0DEE4337E06E5D CRC64; MNKRVSMLFT IAAVAVMGAT LFGSTYTQTQ IAGQSLDMDQ MDVSVMDKIR HMGGLQLVMP EAFAETDCGA LENSGRNVVE FNLTGESVEL PIMGGKTYHA MTFSEQVPGP TLRVTQGDVV KMTLTIPDDE VTGHGNDMHA SQMSAGNFES VNPGETSQYC YIAESAGMFK YHCSGVKLIG MDQHVLSGMY GITIVDPANG YKKLMVEKTS GSGELDRKFY DADALEFQLQ YNQLYLTPEG NYDAGAMFKH QNTATVVNGM QFGYVPNMAH NLLVNGDVNK NIFVAQPWNG LEHKQYQSQL LFVENDQHVR LFVENQGNEP VFFHIVGEIL DRVTQGNRVQ SAATETWLLG GSQGMIVDLV FDEPGAYAAV NHDYAAIYTG AATVFVAGDP FGLNPVLVEK GVIPAPVASY AYALGNPSSA VPPMGMNSIA HPAINIHGLM TDNVASEMQE SGDYVALWEV IPVVAEILTS // ID A9A2S2_NITMS Unreviewed; 184 AA. AC A9A2S2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13599.1}; GN OrderedLocusNames=Nmar_1703 {ECO:0000313|EMBL:ABX13599.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13599.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13599.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13599.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13599.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2S2; -. DR STRING; 436308.Nmar_1703; -. DR EnsemblBacteria; ABX13599; ABX13599; Nmar_1703. DR KEGG; nmr:Nmar_1703; -. DR eggNOG; arCOG03788; Archaea. DR eggNOG; ENOG410XUXB; LUCA. DR HOGENOM; HOG000109335; -. DR OMA; GHENELF; -. DR BioCyc; NMAR436308:GI3J-1748-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 184 AA; 20027 MW; 897E70CA885A0FE0 CRC64; MNPKIFVGVA VAALAAALGG ILIMGPSIDL ESPAQMTDGS NVPQVKPLVI ELEEIVVSKI SERSATIDIA FEIKNPNEGS MMVTTMDYQL YETGYSQSEQ IGGGQIGHRA EGMVEFGSNY YTLLGGNSII LRDEIVLKNS GNTPELWSDF ESNTNTWKVS GVVFYNLSSM TSGHENELFF EFTQ // ID A9A5P9_NITMS Unreviewed; 392 AA. AC A9A5P9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13054.1}; GN OrderedLocusNames=Nmar_1158 {ECO:0000313|EMBL:ABX13054.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13054.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13054.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13054.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13054.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5P9; -. DR STRING; 436308.Nmar_1158; -. DR EnsemblBacteria; ABX13054; ABX13054; Nmar_1158. DR KEGG; nmr:Nmar_1158; -. DR eggNOG; COG2110; LUCA. DR HOGENOM; HOG000005539; -. DR OMA; FANLYFQ; -. DR BioCyc; NMAR436308:GI3J-1190-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR029494; DUF4433. DR InterPro; IPR002589; Macro_dom. DR Pfam; PF14487; DUF4433; 1. DR Pfam; PF01661; Macro; 1. DR PROSITE; PS51154; MACRO; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 201 388 Macro. {ECO:0000259|PROSITE:PS51154}. SQ SEQUENCE 392 AA; 45063 MW; A823A6EF40CCB7AB CRC64; MDEFKIYTPD LSQYLFYITH IDNIPSMLQN GILSHDQIVK QKLEYTSIYD SDIVSSRREK TANGKSLWYF ANLYFQPRNP MLYRVTMEKS PDCIAVVAVD KKILTTPNTI ITDGNAANGP THFYPNTEFK TIERQINRIT SLQWWTDSNA TKRQIMAECL VPERIPPEFI RAIYVSNHTL ADEIRNSMSS SISIIPEPSM FFQPVRQIPL TSNLSLVEGD LFFSKMQTLT VSVNCIGVMG KGLASRAKYQ FPDVYVHYQD QCKRKTLRMG KPVLYQREAP YHEQIADDPS SLGNKKDTWF LLFATKQHWR DNSDIEGIEQ GLKWLLDNYE QKGIESLAIP ALGCGLGRLS WEDVGPILCK YLSQMNIPVW IYLPAEKQLS NNLLTKEFLL DS // ID A9A1H7_NITMS Unreviewed; 453 AA. AC A9A1H7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Fumarate lyase {ECO:0000313|EMBL:ABX13156.1}; GN OrderedLocusNames=Nmar_1260 {ECO:0000313|EMBL:ABX13156.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13156.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13156.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13156.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13156.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1H7; -. DR STRING; 436308.Nmar_1260; -. DR EnsemblBacteria; ABX13156; ABX13156; Nmar_1260. DR KEGG; nmr:Nmar_1260; -. DR eggNOG; arCOG01750; Archaea. DR eggNOG; COG1027; LUCA. DR HOGENOM; HOG000061737; -. DR KO; K01744; -. DR OMA; IGHHTAI; -. DR BioCyc; NMAR436308:GI3J-1293-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:InterPro. DR Gene3D; 1.10.275.10; -; 1. DR InterPro; IPR024083; Fumarase/histidase_N. DR InterPro; IPR018951; Fumarase_C_C. DR InterPro; IPR020557; Fumarate_lyase_CS. DR InterPro; IPR000362; Fumarate_lyase_fam. DR InterPro; IPR022761; Fumarate_lyase_N. DR InterPro; IPR008948; L-Aspartase-like. DR PANTHER; PTHR11444; PTHR11444; 1. DR Pfam; PF10415; FumaraseC_C; 1. DR Pfam; PF00206; Lyase_1; 1. DR PRINTS; PR00149; FUMRATELYASE. DR SUPFAM; SSF48557; SSF48557; 1. DR PROSITE; PS00163; FUMARATE_LYASES; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX13156.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 340 Lyase_1. {ECO:0000259|Pfam:PF00206}. FT DOMAIN 406 451 FumaraseC_C. {ECO:0000259|Pfam:PF10415}. SQ SEQUENCE 453 AA; 49023 MW; 3B048EEF1B8318BD CRC64; MKFRLDQDSL GKVKIPSDAY YGAFTGRAIK QYHVTGNTSH ENLIKSFVMI KRSAAVANMK TKAIDTKRGK AIVSACDKIL AGKHVDQFVV DMINSGAGTA FNMNSNEVIS NVALEILRKK KGQYEFLHPN DHVNMSQSSN DTYPTAMHVA ILMNLKETIP AIDILIKSLS KKAKQFSSFK KIGRTHLMDA LPVTLGSEFA AYVTSITKAR NELVASQKEL QNVALGGTAV GSGANTPKGY RKIAIAELGK ISKLPLRPEK DMQHGLQSKY AVANCSGALR NLALEIGKLA NDIRLMASGP IAGLAEIGIP AVHAGSSIMP GKVNPSLAEC MNMICFNIIG NDTAVSYAAQ GGQFELNVML PGMLKCMLES TDMIKNFLPI FSANLIDGLT ANKDKLRADI ENSPVIVTLL TPKIGYLKSA ELFKESLKTG KTIRELVVSK KLMTNKEIDS LFG // ID A9A401_NITMS Unreviewed; 201 AA. AC A9A401; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208}; DE Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208}; DE Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208}; DE EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208}; GN Name=pyrE {ECO:0000256|HAMAP-Rule:MF_01208}; GN OrderedLocusNames=Nmar_0289 {ECO:0000313|EMBL:ABX12185.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12185.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12185.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12185.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the transfer of a ribosyl phosphate group from CC 5-phosphoribose 1-diphosphate to orotate, leading to the formation CC of orotidine monophosphate (OMP). {ECO:0000256|HAMAP- CC Rule:MF_01208}. CC -!- CATALYTIC ACTIVITY: Orotidine 5'-phosphate + diphosphate = orotate CC + 5-phospho-alpha-D-ribose 1-diphosphate. {ECO:0000256|HAMAP- CC Rule:MF_01208}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01208}; CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; UMP from orotate: step 1/2. {ECO:0000256|HAMAP- CC Rule:MF_01208}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01208}. CC -!- SIMILARITY: Belongs to the purine/pyrimidine CC phosphoribosyltransferase family. PyrE subfamily. CC {ECO:0000256|HAMAP-Rule:MF_01208}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12185.1; -; Genomic_DNA. DR ProteinModelPortal; A9A401; -. DR STRING; 436308.Nmar_0289; -. DR EnsemblBacteria; ABX12185; ABX12185; Nmar_0289. DR KEGG; nmr:Nmar_0289; -. DR eggNOG; arCOG00029; Archaea. DR eggNOG; COG0461; LUCA. DR HOGENOM; HOG000037976; -. DR KO; K00762; -. DR OMA; TTNPKVL; -. DR BioCyc; NMAR436308:GI3J-301-MONOMER; -. DR UniPathway; UPA00070; UER00119. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004588; F:orotate phosphoribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.2020; -; 1. DR HAMAP; MF_01208; PyrE; 1. DR InterPro; IPR023031; OPRT. DR InterPro; IPR004467; Or_phspho_trans_dom. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR Pfam; PF00156; Pribosyltran; 1. DR SUPFAM; SSF53271; SSF53271; 1. DR TIGRFAMs; TIGR00336; pyrE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, KW ECO:0000313|EMBL:ABX12185.1}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_01208}; KW Pyrimidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01208}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01208, KW ECO:0000313|EMBL:ABX12185.1}. FT DOMAIN 55 163 Pribosyltran. {ECO:0000259|Pfam:PF00156}. FT REGION 121 129 5-phosphoribose 1-diphosphate binding. FT {ECO:0000256|HAMAP-Rule:MF_01208}. FT BINDING 95 95 5-phosphoribose 1-diphosphate; shared FT with dimeric partner. {ECO:0000256|HAMAP- FT Rule:MF_01208}. FT BINDING 99 99 5-phosphoribose 1-diphosphate; shared FT with dimeric partner. {ECO:0000256|HAMAP- FT Rule:MF_01208}. FT BINDING 125 125 Orotate. {ECO:0000256|HAMAP- FT Rule:MF_01208}. FT BINDING 153 153 Orotate. {ECO:0000256|HAMAP- FT Rule:MF_01208}. SQ SEQUENCE 201 AA; 22335 MW; 6F8B8A718209D3D6 CRC64; MEFVKEFATF LHQKGIIKFG DFTLASGKKS SYYVDLRLVP SYPQEFRKMV KYLENEIAQN IGLDKFDSIV SVPTGGLVIA SALAIETVKP LIYVRSKPKD YGTSKSVEGK IHDGMQVVMI DDVATTGGSV VNAIKSLKEV NISVKDAYVI VNRMEGADEA LNELDVKMHS ILNILQITEA LHEQNLVDDE ILEKVKNQIA K // ID A9A4D8_NITMS Unreviewed; 124 AA. AC A9A4D8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12627.1}; GN OrderedLocusNames=Nmar_0731 {ECO:0000313|EMBL:ABX12627.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12627.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12627.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12627.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12627.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0731; -. DR EnsemblBacteria; ABX12627; ABX12627; Nmar_0731. DR KEGG; nmr:Nmar_0731; -. DR eggNOG; arCOG08757; Archaea. DR eggNOG; ENOG41111FB; LUCA. DR HOGENOM; HOG000108668; -. DR OMA; AFKTWSG; -. DR BioCyc; NMAR436308:GI3J-757-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 124 AA; 14575 MW; E6CB07DDE8770191 CRC64; MSIAGMYMLN VPEYQEEKIK QALDMLYIDR KNEFRELSQV LLTEKALKAM PNWKEFVLNF SLDVEEAFKT WSGQNPLLSS SPQKALTILR QLGHDKTSMN QLVHLLNLSY SMSLEFKEIY RRLK // ID A9A1W8_NITMS Unreviewed; 471 AA. AC A9A1W8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:ABX12089.1}; GN OrderedLocusNames=Nmar_0193 {ECO:0000313|EMBL:ABX12089.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12089.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12089.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12089.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12089.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1W8; -. DR STRING; 436308.Nmar_0193; -. DR EnsemblBacteria; ABX12089; ABX12089; Nmar_0193. DR KEGG; nmr:Nmar_0193; -. DR eggNOG; arCOG00861; Archaea. DR eggNOG; COG0527; LUCA. DR HOGENOM; HOG000108770; -. DR KO; K00928; -. DR OMA; MFGMKIL; -. DR BioCyc; NMAR436308:GI3J-196-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.1160.10; -; 2. DR InterPro; IPR001048; Asp/Glu/Uridylate_kinase. DR Pfam; PF00696; AA_kinase; 1. DR SUPFAM; SSF53633; SSF53633; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12089.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12089.1}. FT DOMAIN 3 298 AA_kinase. {ECO:0000259|Pfam:PF00696}. SQ SEQUENCE 471 AA; 52644 MW; ABCE0D388C05C973 CRC64; MTKLVVAKFG GSAIGPNGVS IPEIIQRITN LKQDSKVIAV FSAPLTLDNG KKRSLTDVML EQGRNAENGV TPSLDIIKST YEKILELVDD ENKGKCENVI EQNLEKAKKA LDEAFESKEF VDEVRSRALA FSGEILMSHV MNYILRSNKI KAETVDFEDW PIITDNNIES TNFLTSESRT KMDKTAELVE QNEVVTIGGF IGKTVDNVTT TYERGGSDRT AADLGILFHK SYETSIDFEK DSAVVSADPK IVESGLREVH QLSYNEARLA GMFGMKILDP IAIKEIVENG VDMPITVTNM KNPDKITTIK RILDEQKGHP IKIVTGKENC AIFRIETNSI QKLLTSLDKD KRYSEFVILS PFTKDGIEFS RILFLDGDYV KRNEKYLLGF DSLATITYNR GVITLIGDEM WRVQQVASRT SAKIGEAGLN ILNMDAQEET SRIIIVVEDT KDNIRKAISA IHQEISEINF I // ID A9A3R6_NITMS Unreviewed; 78 AA. AC A9A3R6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Transcription factor CBF/NF-Y/histone domain protein {ECO:0000313|EMBL:ABX13328.1}; GN OrderedLocusNames=Nmar_1432 {ECO:0000313|EMBL:ABX13328.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13328.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13328.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13328.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13328.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3R6; -. DR STRING; 436308.Nmar_1432; -. DR EnsemblBacteria; ABX13328; ABX13328; Nmar_1432. DR KEGG; nmr:Nmar_1432; -. DR eggNOG; arCOG02144; Archaea. DR eggNOG; COG2036; LUCA. DR HOGENOM; HOG000222925; -. DR OMA; DMASHAG; -. DR BioCyc; NMAR436308:GI3J-1467-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.20.10; -; 1. DR InterPro; IPR003958; CBFA_NFYB_domain. DR InterPro; IPR009072; Histone-fold. DR Pfam; PF00808; CBFD_NFYB_HMF; 1. DR SUPFAM; SSF47113; SSF47113; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 71 CBFD_NFYB_HMF. FT {ECO:0000259|Pfam:PF00808}. SQ SEQUENCE 78 AA; 8500 MW; 683E23BA0B93488F CRC64; MKTQSMKSSE LGLSAMYRIL KKAGAERVSD ESADELRRVI EEVANGIAKS AVDMASHAGR KTVKGEDVKL ASKPFNKF // ID A9A520_NITMS Unreviewed; 215 AA. AC A9A520; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11929.1}; GN OrderedLocusNames=Nmar_0029 {ECO:0000313|EMBL:ABX11929.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11929.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11929.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11929.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11929.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0029; -. DR EnsemblBacteria; ABX11929; ABX11929; Nmar_0029. DR KEGG; nmr:Nmar_0029; -. DR eggNOG; arCOG00452; Archaea. DR eggNOG; COG5491; LUCA. DR HOGENOM; HOG000110498; -. DR OMA; MNEDVEA; -. DR BioCyc; NMAR436308:GI3J-29-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0007034; P:vacuolar transport; IEA:InterPro. DR InterPro; IPR005024; Snf7_fam. DR Pfam; PF03357; Snf7; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 215 AA; 23262 MW; 95FDB03614B1CC03 CRC64; MANLSNKWTK PPTTSITEKI GDTVKPKGAL KPRVQEGVKR LRLQIQKLDK MLSGLKERDE QLFARIVEAT QKHDTQTSKV LGNELAEIRK VIKIMSSARV ALEQIELRLT TFSDLGDTVV AIMPTMGLMK NLKSSLGKVM PGAEAEIGQM AEMLGGFMTE SFSGDAAFGM DETTNAESDA ILKEAAAVAE SSAGQMFPSV PTESAASTES TSKFY // ID A9A1B7_NITMS Unreviewed; 88 AA. AC A9A1B7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12752.1}; GN OrderedLocusNames=Nmar_0856 {ECO:0000313|EMBL:ABX12752.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12752.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12752.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12752.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12752.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0856; -. DR EnsemblBacteria; ABX12752; ABX12752; Nmar_0856. DR KEGG; nmr:Nmar_0856; -. DR BioCyc; NMAR436308:GI3J-883-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 45 68 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 88 AA; 9950 MW; 854B79F576125744 CRC64; MTIPISPTGS SFFFDLLVFA FDLVVFAFEV VFDFVVFAFD FVTLAFVSLA FDLVVLALVS FDLVAFFVDF FSAMNVENQE FALFLKIL // ID A9A283_NITMS Unreviewed; 155 AA. AC A9A283; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12794.1}; GN OrderedLocusNames=Nmar_0898 {ECO:0000313|EMBL:ABX12794.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12794.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12794.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12794.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12794.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12794; ABX12794; Nmar_0898. DR KEGG; nmr:Nmar_0898; -. DR eggNOG; arCOG10565; Archaea. DR eggNOG; ENOG411109W; LUCA. DR BioCyc; NMAR436308:GI3J-926-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 155 AA; 18318 MW; 225AE10D985DA871 CRC64; MSFEIDWRKN FYGISWAHEK DRIVVSIVFE DKEEAAEISK NIENWSDKFT RLTIIEKEED EFALCCYQDP QVSKSDKHIG LFRTGMRQSS GYNQVKPIIE EKAPLLQIAY AADAIDITTY EEISKLIPIR KFRIINEKDL KKQEYYYEKM STLSN // ID A9A1D2_NITMS Unreviewed; 436 AA. AC A9A1D2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 62. DE SubName: Full=Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ABX12767.1}; DE EC=6.1.1.12 {ECO:0000313|EMBL:ABX12767.1}; GN OrderedLocusNames=Nmar_0871 {ECO:0000313|EMBL:ABX12767.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12767.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12767.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12767.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000256|RuleBase:RU003746}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12767.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1D2; -. DR STRING; 436308.Nmar_0871; -. DR EnsemblBacteria; ABX12767; ABX12767; Nmar_0871. DR KEGG; nmr:Nmar_0871; -. DR eggNOG; arCOG00406; Archaea. DR eggNOG; COG0017; LUCA. DR HOGENOM; HOG000226032; -. DR KO; K01876; -. DR OMA; TPKMIAT; -. DR BioCyc; NMAR436308:GI3J-899-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004815; F:aspartate-tRNA ligase activity; IEA:UniProtKB-EC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006422; P:aspartyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR InterPro; IPR004364; aa-tRNA-synt_II. DR InterPro; IPR018150; aa-tRNA-synt_II-like. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004523; Asp-tRNA_synthase_arc. DR InterPro; IPR002312; Asp/Asn-tRNA-synth_IIb. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR004365; NA-bd_OB_tRNA. DR PANTHER; PTHR22594; PTHR22594; 1. DR PANTHER; PTHR22594:SF10; PTHR22594:SF10; 1. DR Pfam; PF00152; tRNA-synt_2; 1. DR Pfam; PF01336; tRNA_anti-codon; 1. DR PRINTS; PR01042; TRNASYNTHASP. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00458; aspS_nondisc; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|RuleBase:RU003747, KW ECO:0000313|EMBL:ABX12767.1}; KW ATP-binding {ECO:0000256|RuleBase:RU003747}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|RuleBase:RU003747, ECO:0000313|EMBL:ABX12767.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU003747}; KW Protein biosynthesis {ECO:0000256|RuleBase:RU003747}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 145 436 AA_TRNA_LIGASE_II. FT {ECO:0000259|PROSITE:PS50862}. SQ SEQUENCE 436 AA; 49389 MW; 571A2E1A434C31F6 CRC64; MIETELGTLR RSHYSDEINS SMDGTQVTVM GWVLTVRGHG NISFATIRDK NGDVSVVAKK GDCPDDIREK ISYLKAHSSI AITGNVKSSE KAPSGYEIVP TELRVFSEVE KIPPFEPIAK TVKNIDTRLE VRPIDLRRKV LQHIFNTRSL VLKSIRSYFN DQNFVEINTP KMIATATEGG AALFPIFYYN KEAFLAQSPQ LYKEQLTMSF EKVFEIAPIF RAEPSRTNRH LAEAISIDLE EAFIDYNDVM SRIEEIIKIS IKTVTDYAKD NPDAEFTIPE IPETIPQYSY DDLVDKMQKA GAKTEWGDDL YPSNLKKIGL EGFYFIKDWP LAPKPFYVKD SKANPKISES FDLMFGDLEL SSGSTRIEKR NELAERMKNK GMNTDAFEYH LGAFDYGVPP HAGCGIGLER LIMALTGTEN IRDVTFYPRD VDRLTP // ID A9A4N9_NITMS Unreviewed; 195 AA. AC A9A4N9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Ferritin Dps family protein {ECO:0000313|EMBL:ABX13017.1}; GN OrderedLocusNames=Nmar_1121 {ECO:0000313|EMBL:ABX13017.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13017.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13017.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13017.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13017.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N9; -. DR SMR; A9A4N9; 5-173. DR STRING; 436308.Nmar_1121; -. DR EnsemblBacteria; ABX13017; ABX13017; Nmar_1121. DR KEGG; nmr:Nmar_1121; -. DR eggNOG; arCOG01093; Archaea. DR eggNOG; COG2406; LUCA. DR HOGENOM; HOG000106499; -. DR OMA; HESWFLE; -. DR BioCyc; NMAR436308:GI3J-1152-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0008199; F:ferric iron binding; IEA:InterPro. DR GO; GO:0006879; P:cellular iron ion homeostasis; IEA:InterPro. DR Gene3D; 1.20.1260.10; -; 1. DR InterPro; IPR009078; Ferritin-like_SF. DR InterPro; IPR012347; Ferritin-rel. DR InterPro; IPR008331; Ferritin_DPS_dom. DR InterPro; IPR014490; UCP018063_ferrtn. DR Pfam; PF00210; Ferritin; 1. DR PIRSF; PIRSF018063; Ferrtn_UCP018063; 1. DR SUPFAM; SSF47240; SSF47240; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 28 165 Ferritin. {ECO:0000259|Pfam:PF00210}. SQ SEQUENCE 195 AA; 22025 MW; B2FC1093A088A62D CRC64; MSESKEPNVV GINVLKQNGV DVDELVNELI KNAAVEFTAY YYFTNLRAHC TGMEGEGLKG IIEDARLEDL SHFESCIERI YQLGGSLPND ATEFIKISGC EFLQLPPNPT DHKAILEKCL KAEQGAIVNW NKICKMTLGK DPATYDIAKD ILAEEIEHES WFLELIYGRP SGHMRRKYAG ERPHTRKHSR ALDMA // ID A9A437_NITMS Unreviewed; 194 AA. AC A9A437; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; GN Name=rps13 {ECO:0000256|HAMAP-Rule:MF_01315}; GN OrderedLocusNames=Nmar_0325 {ECO:0000313|EMBL:ABX12221.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12221.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12221.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12221.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Located at the top of the head of the 30S subunit, it CC contacts several helices of the 16S rRNA. In the 70S ribosome it CC contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S CC subunit (bridge B1b), connecting the 2 subunits; these bridges are CC implicated in subunit movement. {ECO:0000256|HAMAP-Rule:MF_01315}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose CC heterodimer with protein S19. Forms two bridges to the 50S subunit CC in the 70S ribosome. {ECO:0000256|HAMAP-Rule:MF_01315}. CC -!- SIMILARITY: Belongs to the ribosomal protein S13P family. CC {ECO:0000256|HAMAP-Rule:MF_01315}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12221.1; -; Genomic_DNA. DR ProteinModelPortal; A9A437; -. DR STRING; 436308.Nmar_0325; -. DR EnsemblBacteria; ABX12221; ABX12221; Nmar_0325. DR KEGG; nmr:Nmar_0325; -. DR eggNOG; arCOG01722; Archaea. DR eggNOG; COG0099; LUCA. DR HOGENOM; HOG000039877; -. DR KO; K02952; -. DR OMA; RIMNTDL; -. DR BioCyc; NMAR436308:GI3J-340-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 4.10.910.10; -; 1. DR HAMAP; MF_01315; Ribosomal_S13_S18; 1. DR InterPro; IPR027437; 30s_Rbsml_prot_S13_C. DR InterPro; IPR001892; Ribosomal_S13. DR InterPro; IPR010979; Ribosomal_S13-like_H2TH. DR InterPro; IPR018269; Ribosomal_S13_CS. DR Pfam; PF00416; Ribosomal_S13; 1. DR SUPFAM; SSF46946; SSF46946; 1. DR PROSITE; PS00646; RIBOSOMAL_S13_1; 1. DR PROSITE; PS50159; RIBOSOMAL_S13_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01315, KW ECO:0000313|EMBL:ABX12221.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01315, KW ECO:0000313|EMBL:ABX12221.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01315}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01315}. SQ SEQUENCE 194 AA; 20922 MW; B69CC289C08BF229 CRC64; MEYLSTQEYR HIVRIVGNDI PGERKMLVGL TQIKGIGYNF ATAILDTLNI DSNSNIGHLT DENVQAIEKL ITNPAEGNFP TWFLNRRKDI ETGNDLHLLT SDIPFTLRND IERERVTASW RGYRHLSGLK VRGQRTRTSG RKGGAVGVAK GGMAAPAKKS SSDAPAAAAA PTTDAPAAEA APAEAAPAAE EKKE // ID A9A4B8_NITMS Unreviewed; 125 AA. AC A9A4B8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12607.1}; GN OrderedLocusNames=Nmar_0711 {ECO:0000313|EMBL:ABX12607.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12607.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12607.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12607.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12607.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12607; ABX12607; Nmar_0711. DR KEGG; nmr:Nmar_0711; -. DR eggNOG; arCOG10535; Archaea. DR eggNOG; ENOG41110EE; LUCA. DR BioCyc; NMAR436308:GI3J-737-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.530.20; -; 1. DR InterPro; IPR023393; START-like_dom. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 125 AA; 14360 MW; 231140890098EC9E CRC64; MPRSRTITIT VKKKTGDAFD AILQLPPKMM PDAKFHDDGW WSFTGPHGKS KLKFNENKPL GILDHQYVDE ESVWDVPMRV VSNGDYSEIL ITLNKPDELT DKQFNKRVEE IGELVNNMKQ IIESS // ID A9A5A0_NITMS Unreviewed; 192 AA. AC A9A5A0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE RecName: Full=Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00234}; DE Short=AK {ECO:0000256|HAMAP-Rule:MF_00234}; DE EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00234}; DE AltName: Full=ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00234}; GN Name=adkA {ECO:0000256|HAMAP-Rule:MF_00234}; GN OrderedLocusNames=Nmar_0403 {ECO:0000313|EMBL:ABX12299.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12299.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12299.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12299.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + AMP = 2 ADP. {ECO:0000256|HAMAP- CC Rule:MF_00234}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00234}. CC -!- SIMILARITY: Belongs to the archaeal adenylate kinase family. CC {ECO:0000256|HAMAP-Rule:MF_00234}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12299.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5A0; -. DR STRING; 436308.Nmar_0403; -. DR EnsemblBacteria; ABX12299; ABX12299; Nmar_0403. DR KEGG; nmr:Nmar_0403; -. DR eggNOG; arCOG01039; Archaea. DR eggNOG; COG2019; LUCA. DR HOGENOM; HOG000105936; -. DR KO; K00939; -. DR OMA; HRDEMRK; -. DR BioCyc; NMAR436308:GI3J-420-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004017; F:adenylate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00234; Adenylate_kinase_AdkA; 1. DR InterPro; IPR023477; Adenylate_kinase_AdkA. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00234}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00234}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00234, ECO:0000313|EMBL:ABX12299.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00234}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00234, KW ECO:0000313|EMBL:ABX12299.1}. FT NP_BIND 11 19 ATP. {ECO:0000256|HAMAP-Rule:MF_00234}. SQ SEQUENCE 192 AA; 21120 MW; D0E63B7BAD1DADB7 CRC64; MAESKKIVLV GIPGVGKTTL LSKIVDHIKD HQKSISVVSY GTLMFEVAKE NGLNDRDELR KLPIGKQQEL QKVAAEKIAA HTEEIVIIDT HAFISSPEGY YPGLPEHVLK IIKPSNFVSV SAKPEEIYSR RMSDDTRNRD KITLANVKKE LDVQSGMISA CAVITGSPVK YILNREGKVD EAANKIINSL GL // ID A9A378_NITMS Unreviewed; 167 AA. AC A9A378; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12507.1}; GN OrderedLocusNames=Nmar_0611 {ECO:0000313|EMBL:ABX12507.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12507.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12507.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12507.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12507.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0611; -. DR EnsemblBacteria; ABX12507; ABX12507; Nmar_0611. DR KEGG; nmr:Nmar_0611; -. DR BioCyc; NMAR436308:GI3J-635-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 167 AA; 19688 MW; 6F6565EB505E10E0 CRC64; MITSPIIFTK KNPDNPLLEV LVESNSDKYE IIWYHWPHDG FMPVEDYEPV IVVYSKKQIK VVITRSAWKF KPHNIDNTLS NPLSVLFKDD FHHYMIRTEE NAVDFDKIIG STQLEQEEYQ SKIKDISPSA IDLKFRTGWG HITNYQVFPH DDPADVAMQY YRAYCEE // ID A9A4F7_NITMS Unreviewed; 76 AA. AC A9A4F7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12646.1}; GN OrderedLocusNames=Nmar_0750 {ECO:0000313|EMBL:ABX12646.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12646.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12646.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12646.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12646.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0750; -. DR EnsemblBacteria; ABX12646; ABX12646; Nmar_0750. DR KEGG; nmr:Nmar_0750; -. DR eggNOG; arCOG10541; Archaea. DR eggNOG; ENOG41110RE; LUCA. DR BioCyc; NMAR436308:GI3J-776-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 76 AA; 9195 MW; E8265EBD288B05FE CRC64; MGLLYTKFYL DFDEDDWNQI SNDPIIFQTK KENVTLEIED ASHNFYKLHF REGGKIQMFR VTGRFRLTWN DDDVLD // ID A9A5A8_NITMS Unreviewed; 126 AA. AC A9A5A8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12307.1}; GN OrderedLocusNames=Nmar_0411 {ECO:0000313|EMBL:ABX12307.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12307.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12307.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12307.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12307.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5A8; -. DR STRING; 436308.Nmar_0411; -. DR EnsemblBacteria; ABX12307; ABX12307; Nmar_0411. DR KEGG; nmr:Nmar_0411; -. DR eggNOG; arCOG08665; Archaea. DR eggNOG; ENOG41110SP; LUCA. DR HOGENOM; HOG000105848; -. DR OMA; AFFTKMY; -. DR BioCyc; NMAR436308:GI3J-429-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR010413; HutX-like. DR Pfam; PF06228; ChuX_HutX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 126 AA; 14811 MW; 37A6E3437790AC1F CRC64; MDVLLFELLS DIVKIENILF VVKSGGATSE VRSPLSIRQR EKWITLGEND DPAHMHIDSE LINYAEFVQE EKPERTSFSV RFYNKDNQRV LAAFFTKMYD DSKTLIPERK KIYEQLNEKF SSKINF // ID A9A410_NITMS Unreviewed; 102 AA. AC A9A410; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12194.1}; GN OrderedLocusNames=Nmar_0298 {ECO:0000313|EMBL:ABX12194.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12194.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12194.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12194.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12194.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0298; -. DR EnsemblBacteria; ABX12194; ABX12194; Nmar_0298. DR KEGG; nmr:Nmar_0298; -. DR eggNOG; arCOG03272; Archaea. DR eggNOG; ENOG410ZZ0A; LUCA. DR HOGENOM; HOG000226748; -. DR OMA; EMHTATC; -. DR BioCyc; NMAR436308:GI3J-311-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR026363; CxxC-x17-CxxC_dom. DR TIGRFAMs; TIGR04272; cxxc_cxxc_Mbark; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 102 AA; 11959 MW; 0AF02ED7E8D3BD4E CRC64; MSFGEEREMH TATCGDCGNE CQVPFKPKED RPVYCRECFP NHRPQRRSGD RFGRSRFNRQ REMHTATCGD CGNECQVPFK PKEDRPVYCR ECFPNHKQTP SV // ID A9A5R5_NITMS Unreviewed; 161 AA. AC A9A5R5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13070.1}; GN OrderedLocusNames=Nmar_1174 {ECO:0000313|EMBL:ABX13070.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13070.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13070.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13070.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13070.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1174; -. DR EnsemblBacteria; ABX13070; ABX13070; Nmar_1174. DR KEGG; nmr:Nmar_1174; -. DR eggNOG; arCOG08634; Archaea. DR eggNOG; ENOG4110ZWP; LUCA. DR HOGENOM; HOG000104962; -. DR BioCyc; NMAR436308:GI3J-1206-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 161 AA; 18135 MW; 9732A9FC67694052 CRC64; MNYHKMIKFA INLLNNHKKA SHMKTKTSIV LAIIASFAVL MFPSEAIAEN SETTTITPIN EEISLQRTVT TMIVPEGNTL PWGFVTGSAS EYVERHPVII QFFDEANDLV HVAQVDVKGD GSYEYKFRVT SIDENGDMEK AFEGEYTVMI YRVIPNSNQL V // ID A9A1V3_NITMS Unreviewed; 133 AA. AC A9A1V3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ABX12074.1}; GN OrderedLocusNames=Nmar_0178 {ECO:0000313|EMBL:ABX12074.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12074.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12074.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12074.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12074.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1V3; -. DR STRING; 436308.Nmar_0178; -. DR EnsemblBacteria; ABX12074; ABX12074; Nmar_0178. DR KEGG; nmr:Nmar_0178; -. DR eggNOG; arCOG00516; Archaea. DR eggNOG; ENOG410YW42; LUCA. DR HOGENOM; HOG000106843; -. DR OMA; PRYMATW; -. DR BioCyc; NMAR436308:GI3J-180-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004733; F:pyridoxamine-phosphate oxidase activity; IEA:InterPro. DR Gene3D; 2.30.110.10; -; 1. DR InterPro; IPR011576; Pyridox_Oxase_FMN-bd. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR Pfam; PF01243; Pyridox_oxidase; 1. DR SUPFAM; SSF50475; SSF50475; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 66 Pyridox_oxidase. FT {ECO:0000259|Pfam:PF01243}. SQ SEQUENCE 133 AA; 15316 MW; 03EEAFAB39B65A3B CRC64; MNKKDEFLKT QKILRLATIG KNKTPHIVPV WYRYSGKKFH IGTNTRTQKA KNLKKNNRVS FCVDTGVNAP NIYGVMGQGK SNLITEKKKV KTIAKKILLR YFKTIENKSA KELLEDTDCI IEIIPEKVSV WSY // ID A9A4Q7_NITMS Unreviewed; 69 AA. AC A9A4Q7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13035.1}; GN OrderedLocusNames=Nmar_1139 {ECO:0000313|EMBL:ABX13035.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13035.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13035.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13035.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13035.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1139; -. DR EnsemblBacteria; ABX13035; ABX13035; Nmar_1139. DR KEGG; nmr:Nmar_1139; -. DR eggNOG; arCOG08813; Archaea. DR eggNOG; ENOG4110ZWA; LUCA. DR HOGENOM; HOG000023871; -. DR BioCyc; NMAR436308:GI3J-1171-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 42 63 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 69 AA; 7830 MW; EEC78C032F9F7944 CRC64; MILNLNKKTK MYILLAVIWF IISLPLPWII NNPDVSESSF LTILGIIGIM SIPFVMLAIV WSIKPELTT // ID A9A3Z7_NITMS Unreviewed; 692 AA. AC A9A3Z7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:ABX12181.1}; DE EC=1.6.99.5 {ECO:0000313|EMBL:ABX12181.1}; GN OrderedLocusNames=Nmar_0285 {ECO:0000313|EMBL:ABX12181.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12181.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12181.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12181.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12181.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0285; -. DR EnsemblBacteria; ABX12181; ABX12181; Nmar_0285. DR KEGG; nmr:Nmar_0285; -. DR eggNOG; arCOG01539; Archaea. DR eggNOG; COG1009; LUCA. DR HOGENOM; HOG000100569; -. DR KO; K00341; -. DR OMA; EWLLEAM; -. DR BioCyc; NMAR436308:GI3J-295-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR InterPro; IPR003945; NADHpl_OxRdtase_5. DR InterPro; IPR001750; ND/Mrp_mem. DR InterPro; IPR001516; Proton_antipo_N. DR Pfam; PF00361; Proton_antipo_M; 1. DR Pfam; PF00662; Proton_antipo_N; 1. DR TIGRFAMs; TIGR01974; NDH_I_L; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12181.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 65 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 91 111 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 123 140 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 146 165 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 202 222 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 234 254 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 289 310 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 316 334 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 341 362 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 374 398 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 418 438 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 458 483 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 504 525 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 567 587 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 615 633 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 674 691 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 81 127 Proton_antipo_N. FT {ECO:0000259|Pfam:PF00662}. FT DOMAIN 190 464 Proton_antipo_M. FT {ECO:0000259|Pfam:PF00361}. SQ SEQUENCE 692 AA; 75536 MW; 00DE8C9CD704CB43 CRC64; MATESIGLPF EATSAAAWLV WILPFAAALI MPGIGKISKR ATGYVAVGFA LMSALSAASL LPVAIEASEI HHQIMWIEAI GLKGGVLADP LSVIMANVVA WISFLIMIYS TGYMKGDKDI TRFWFWMMFF IGSMQIIVLS DNLLQVFFGW EGVGLASYAL ISFWYRDKKK DHVGQEGRTV LGLLDYYAPT HAGMKAFIMT KVGDVMMIAG MLLIFLFAGT FGFKELMGDH EWAIAMNAQG MLVPAFVLLF GGAIGKSAQF PLNEWLLEAM TGPTAVSALI HAATMVKAGV FLVARIGPIV FALGAAGIMA DQFFEIVAWV GAITALLLAT QGMVNPEIKK VLAYSTGSQI GYMMMALGVA GLSHQYVDGY TAGFFHLISH AMFKASLFMA AGSLLHIVGS RFMTDMGGLR KHMKKTYAFM WAAGLGLMGA PFITTGFWSK DAIFAAVYTS GNEWALPLFA IAVLTAIITA FYTTRMIGMV FFGNKSKHIQ KMEEEGHHIH EASLSMWAPY GILAVLTIGI GLIGLSTEHG LHHMFEVYLE DSFGIHSEHA KAEASILPEF LKGINPVALG ASLVAFAIGI GLGYIFYIGR WVDPVKFVNS NIFFYAIHKV ILSRWYLNAI VYWCFVIAPL WLARGVFRYF EKTAIDYGMN DGFQKATAWG AKVVQGTQTG VSQSYLFVFG AGLLFVVLIL LM // ID A9A1X3_NITMS Unreviewed; 170 AA. AC A9A1X3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12094.1}; GN OrderedLocusNames=Nmar_0198 {ECO:0000313|EMBL:ABX12094.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12094.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12094.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12094.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12094.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0198; -. DR EnsemblBacteria; ABX12094; ABX12094; Nmar_0198. DR KEGG; nmr:Nmar_0198; -. DR eggNOG; arCOG06293; Archaea. DR eggNOG; ENOG410YIXD; LUCA. DR HOGENOM; HOG000104940; -. DR OMA; QGLELKF; -. DR BioCyc; NMAR436308:GI3J-202-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 103 130 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 158 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 170 AA; 18120 MW; ECFFACC041817C54 CRC64; MNRKISCLVS KLQLIQNVLG MKRYATIAII SGTALGFIYY FLTMSMLPSH FDVAVEISPS YIATSITLTV VISALAGINF AMMAFKMKRM KMVNSVKTNS SAVLGGAFAA FTPGCPACTA PLAVILGAIG GLSLFPMQGL ELKFVSVGVL IFSIYWIARG LQSKSCCKIG // ID A9A318_NITMS Unreviewed; 309 AA. AC A9A318; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=ABC-type phosphate/phosphonate transport system periplasmic component-like protein {ECO:0000313|EMBL:ABX12146.1}; GN OrderedLocusNames=Nmar_0250 {ECO:0000313|EMBL:ABX12146.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12146.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12146.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12146.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12146.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0250; -. DR EnsemblBacteria; ABX12146; ABX12146; Nmar_0250. DR KEGG; nmr:Nmar_0250; -. DR eggNOG; arCOG01805; Archaea. DR eggNOG; COG3221; LUCA. DR KO; K02044; -. DR OMA; RISDDPK; -. DR BioCyc; NMAR436308:GI3J-257-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 309 AA; 34649 MW; A90895049F84E461 CRC64; MKIPIILAVI VVGIISVAAV FSLESGEMTN SDEITVQDDT ILQDLPLEFD ETITIGTIHR DSVKMTKRYQ PLADYVAEKL SDENTTYKGV VRIIGTEEGM INSVINKEMD IFFDSPLIGM KVAEQADMNP LLLSWKEGYR EYHSVFIVPI ESEITFDDLN GKTIVFEDTE STSGYLLPLT HLQNAGYVAD ASSENITPVF SLDDENTPIW LLEGRGDVGA TSNLDFEDIP TNIKEKVKVI EKTGSIPRQM VFVGNHIEDQ ENLKTILLEM NETPEALEIL GKISRTSQFS EIDLEKDLEQ VRKILESLR // ID A9A1T8_NITMS Unreviewed; 440 AA. AC A9A1T8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12059.1}; GN OrderedLocusNames=Nmar_0163 {ECO:0000313|EMBL:ABX12059.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12059.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12059.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12059.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12059.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0163; -. DR EnsemblBacteria; ABX12059; ABX12059; Nmar_0163. DR KEGG; nmr:Nmar_0163; -. DR eggNOG; arCOG00497; Archaea. DR eggNOG; COG2220; LUCA. DR KO; K14952; -. DR OMA; SHEHEDH; -. DR BioCyc; NMAR436308:GI3J-164-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.60.15.10; -; 1. DR InterPro; IPR001279; Metallo-B-lactamas. DR SUPFAM; SSF56281; SSF56281; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 440 AA; 50859 MW; 25A60721E40D0E4A CRC64; MFVRFLGQAC TLIETNNFRI IVDPWIVGPC NVNTWYTLRR EPATKKNIPT DVDAIYISHE HEDHFQAESL CQFDKKTQIY ICNFPTNRFH NAIKELGFSN ITVLDSWKPE KINEGLEITS IKNPDLMFED SALLIKSKEG TVFCQTDCKM DFESLKKVNA AKPDIGFFMY SVANWYPDAY NYSKEKRDEI AIKRKDNKIN GFVNYVNTIK PKFAIPYAGG PLFPHESQLK LNYPISVFGC PDEPKKAWDN SGNLGTEVVA MAADDEISID GTHTKNNNPI FSSDKTDVVN EFSIQVQEDL NRRWKEEGEA SQKLSNEIYD YFNKIISENP VARKHIDMKV QLIADGKNGG EYILDISKDK ESGSFVTEGK TDDWNYWMKI PAHLVQKAVN NELLWETLFL SARWQGDRKP DQWNEHFINL LYDPDPTRIS NIYKIYNRLH // ID A9A366_NITMS Unreviewed; 373 AA. AC A9A366; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12495.1}; GN OrderedLocusNames=Nmar_0599 {ECO:0000313|EMBL:ABX12495.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12495.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12495.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12495.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12495.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0599; -. DR EnsemblBacteria; ABX12495; ABX12495; Nmar_0599. DR KEGG; nmr:Nmar_0599; -. DR eggNOG; arCOG04181; Archaea. DR eggNOG; COG4046; LUCA. DR HOGENOM; HOG000108257; -. DR OMA; DFAVIEP; -. DR BioCyc; NMAR436308:GI3J-622-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR009995; DUF1512. DR Pfam; PF07431; DUF1512; 1. DR PIRSF; PIRSF016495; UCP016495; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 37 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 373 AA; 41692 MW; 191E72111187EEC0 CRC64; MDFTNFDIDQ LFGMKDDSNP LMMLIWILPI VIFIFYGQRI QLYVTSGEIK KGIKKLDGFR EESRNELITY INKHLSPKNN PEKKIDQFLE YFTIMPVDMD PNGIVEKVQH TVRSREDYTR EHVKSLFSEI NEIELSKVQT LLEIASSLQM IHKIINHMFL TAKKQNNYPL ILPLQMILPF IMEQAEAMKE AIPVFKTGQP VGDGIGPMVV GKMMLNSPKE IISFQTALAQ TTFENRNLFL LKAEGPGSTV GRPSDALQSI VSKNKIDAVI MIDAALKMEG EDSASIARGF GAAIGGIGTE KFHIEAVATD NQIPIFSIVV KQSVKEAITL MTKEIADQAD DVRSQVYEII LENTKEGQSV VVIGVGNTIG VPQ // ID A9A5G1_NITMS Unreviewed; 128 AA. AC A9A5G1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12672.1}; GN OrderedLocusNames=Nmar_0776 {ECO:0000313|EMBL:ABX12672.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12672.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12672.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12672.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12672.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12672; ABX12672; Nmar_0776. DR KEGG; nmr:Nmar_0776; -. DR BioCyc; NMAR436308:GI3J-802-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 128 AA; 15262 MW; 0BFDA3B38ECAE5D8 CRC64; MTKQENPLYP IDIDDYPKLF DYVLTADGLI HFQSLKRNYV LGKTLTQDEY NKLRLLYVYY ATANRNTSEV FAWQDLCVTL DNQGIIEKEM YQSKEDLKKQ QLITENPYYV SGLYRKYTEF VKNNMNSK // ID A9A1F1_NITMS Unreviewed; 370 AA. AC A9A1F1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE RecName: Full=Iron-sulfur cluster carrier protein {ECO:0000256|HAMAP-Rule:MF_02040}; GN OrderedLocusNames=Nmar_1234 {ECO:0000313|EMBL:ABX13130.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13130.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13130.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13130.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds and transfers iron-sulfur (Fe-S) clusters to CC target apoproteins. Can hydrolyze ATP. {ECO:0000256|HAMAP- CC Rule:MF_02040}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_02040}. CC -!- SIMILARITY: Belongs to the Mrp/NBP35 ATP-binding proteins family. CC {ECO:0000256|HAMAP-Rule:MF_02040}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13130.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1F1; -. DR STRING; 436308.Nmar_1234; -. DR EnsemblBacteria; ABX13130; ABX13130; Nmar_1234. DR KEGG; nmr:Nmar_1234; -. DR eggNOG; arCOG00585; Archaea. DR eggNOG; COG0489; LUCA. DR HOGENOM; HOG000079914; -. DR KO; K03593; -. DR OMA; DPEIRRP; -. DR BioCyc; NMAR436308:GI3J-1267-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_02040; Mrp_NBP35; 1. DR InterPro; IPR002744; DUF59. DR InterPro; IPR019591; Mrp/NBP35_ATP-bd. DR InterPro; IPR000808; Mrp_CS. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR23264; PTHR23264; 1. DR Pfam; PF01883; DUF59; 1. DR Pfam; PF10609; ParA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS01215; MRP; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_02040}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_02040}; KW Iron {ECO:0000256|HAMAP-Rule:MF_02040}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_02040}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_02040}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_02040}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 69 DUF59. {ECO:0000259|Pfam:PF01883}. FT NP_BIND 105 112 ATP. {ECO:0000256|HAMAP-Rule:MF_02040}. SQ SEQUENCE 370 AA; 39523 MW; BBC74C0A032BC1DC CRC64; MVGIDQVLEK LSTVIDPDLK KDIVSMGMIK DLELNDNNLK FTLELTTPAC PFNVEIEDDV RKAIGELTEL KNFDMNVTAK VMEGRSLDAD TGMATVKNII GVASGKGGVG KSTVSLNLAL ALQQTGAKVG LLDADIYGPS IPLMLGMKDG FMEVEDNKLQ PAESNGLKVV SFGFFAEQAH QAAIYRGPII SGILKQFLVD TNWSDLDYLI VDLPPGTGDI PLTLAQTIPI TGILVVTTPQ DVASNVAVKA IGMFEKLNVP IIGVVENMSH FICPNCDERH YIFGDGGAKK ISEQHNMPFL GEIPLNSGIM SGSDIGKPIM ITNPDSPSAD AFRIAAKNIA AQCSILAAKL QEEMESEGSN EESAPEASTN // ID A9A3Z3_NITMS Unreviewed; 200 AA. AC A9A3Z3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13693.1}; GN OrderedLocusNames=Nmar_1797 {ECO:0000313|EMBL:ABX13693.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13693.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13693.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13693.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13693.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1797; -. DR EnsemblBacteria; ABX13693; ABX13693; Nmar_1797. DR KEGG; nmr:Nmar_1797; -. DR eggNOG; arCOG08041; Archaea. DR eggNOG; ENOG41110BM; LUCA. DR HOGENOM; HOG000110229; -. DR OMA; ERQLIDM; -. DR BioCyc; NMAR436308:GI3J-1845-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR000835; HTH_MarR-typ. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF13463; HTH_27; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 125 186 HTH marR-type DNA-binding. FT {ECO:0000259|Pfam:PF13463}. SQ SEQUENCE 200 AA; 22965 MW; 3CC54CBB16DE4DE8 CRC64; MLIEIPDPEV ILSVILAFIV GLGGLYGYYK IRPFIKSKSE MVDTSQSERL EYYERQLIDM KIRLDALEIQ GIEQKTEDPN LELKQFLEKL AKNEVQEKEV VTSQEPEKVP EKPVSTPKIT NIEHTNPTNY VLHLITNKAM TSRDIQITLK KSREHTSRLM KKLFEEGLVQ RNTESKPYTY SITEKGIAKV GEVETNPTVA // ID A9A2Z4_NITMS Unreviewed; 70 AA. AC A9A2Z4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 44. DE RecName: Full=30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; GN Name=rps28e {ECO:0000256|HAMAP-Rule:MF_00292}; GN OrderedLocusNames=Nmar_0226 {ECO:0000313|EMBL:ABX12122.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12122.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12122.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12122.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S28e family. CC {ECO:0000256|HAMAP-Rule:MF_00292}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12122.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z4; -. DR SMR; A9A2Z4; 6-70. DR STRING; 436308.Nmar_0226; -. DR EnsemblBacteria; ABX12122; ABX12122; Nmar_0226. DR KEGG; nmr:Nmar_0226; -. DR eggNOG; arCOG04314; Archaea. DR eggNOG; COG2053; LUCA. DR HOGENOM; HOG000224552; -. DR KO; K02979; -. DR OMA; ILCLLET; -. DR BioCyc; NMAR436308:GI3J-232-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00292; Ribosomal_S28e; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR000289; Ribosomal_S28e. DR InterPro; IPR028626; Ribosomal_S28e_CS. DR PANTHER; PTHR10769; PTHR10769; 1. DR Pfam; PF01200; Ribosomal_S28e; 1. DR ProDom; PD005541; Ribosomal_S28e; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS00961; RIBOSOMAL_S28E; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00292, KW ECO:0000313|EMBL:ABX12122.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00292, KW ECO:0000313|EMBL:ABX12122.1}. SQ SEQUENCE 70 AA; 7756 MW; 88F44723594C975C CRC64; MSATTDEVVH SEIIQIVGRT GIAGEVIQVR VKVLTGKDKG RILTRNVKGS VRLGEILMLR ETEREAKKIK // ID A9A646_NITMS Unreviewed; 723 AA. AC A9A646; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Regulatory protein ArsR {ECO:0000313|EMBL:ABX13524.1}; GN OrderedLocusNames=Nmar_1628 {ECO:0000313|EMBL:ABX13524.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13524.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13524.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13524.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13524.1; -; Genomic_DNA. DR ProteinModelPortal; A9A646; -. DR STRING; 436308.Nmar_1628; -. DR EnsemblBacteria; ABX13524; ABX13524; Nmar_1628. DR KEGG; nmr:Nmar_1628; -. DR eggNOG; arCOG00734; Archaea. DR eggNOG; arCOG04889; Archaea. DR eggNOG; COG1328; LUCA. DR KO; K00527; -. DR OMA; VMASPNR; -. DR BioCyc; NMAR436308:GI3J-1673-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008998; F:ribonucleoside-triphosphate reductase activity; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR005144; ATP-cone_dom. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR012833; NrdD. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF03477; ATP-cone; 1. DR Pfam; PF12840; HTH_20; 1. DR Pfam; PF13597; NRDD; 1. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS51161; ATP_CONE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 143 235 ATP-cone. {ECO:0000259|PROSITE:PS51161}. SQ SEQUENCE 723 AA; 79827 MW; 9CBC842A7F5FB84B CRC64; MKMSDEELEM DLEGDLDADM DDDDLDTDLD DDSDSPKRGG ILQSTSKRVR MIFSVMASPN RIDILRILNS KGPLTYSELK SLAGFKSKKE SGKFAYHLRK LLRQSLVALN KSERRYTITN LGKLVLSLAR QIEERSIIES GKMYVRTSHE SIEEFNSHKI IQSLVREGSL PLELAQKITE EVENRIYKYQ TTYLTGSLIR EMVNSVLLEH GHEEYRNKLA RLGLPVFDVQ EMITNLDNVD NGAEGLLFKT GQTVFAEHLL TNILPKDVAD SHLSGDLHIT NPGIWSMIPD TMFVNIKELI EDGIDLGGKY LDVSRIPASK QLDEITSALS IVVSLLSKEA SQEIILDGFV SLFSKHSKSL PELEQKLTTA FATASTTSKY NKSSTNVSIR LQLGSDTKII NSIINAYKNY TKLTPIPKIG LIIDNEKGKI TDVSAAVSEI ISLGGKVMFA KGQTSSHGIT NGSTKSSGPL SIMLESVSIN LPRLAFESNK DETYFRARLA LLMKPALSSM ALRKKDISDL TRRGLNPILA KNTQYMQKSN VSLVINLVGL KEAVFNILGF QDNKEGREIL HKVIETAVDV GAKKGKELGD PVAICMTETE SATRFATLDG EKYGKNSSLN SMEGDSYSEG IIIDASEVSD YTAKSEPISE CNKLSKLLNG GLFVTLNIGK DAKPAEIKKA IEKTSELTTS FKPVQDIAIC GECGFKDEPF EDKCPKCKSP YVV // ID A9A3B2_NITMS Unreviewed; 79 AA. AC A9A3B2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12541.1}; GN OrderedLocusNames=Nmar_0645 {ECO:0000313|EMBL:ABX12541.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12541.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12541.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12541.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12541.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12541; ABX12541; Nmar_0645. DR KEGG; nmr:Nmar_0645; -. DR eggNOG; arCOG10532; Archaea. DR eggNOG; ENOG411109Z; LUCA. DR BioCyc; NMAR436308:GI3J-670-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 29 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 79 AA; 8943 MW; D842D7F142A02AE6 CRC64; MISQKNKFKI PLIILSGILI SVLVIFSSNS SCGIQHMTIL NEINFYQDTL DPEFCEVIVE KIDLFNDSCE PYVEILDCG // ID A9A5T1_NITMS Unreviewed; 86 AA. AC A9A5T1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13086.1}; GN OrderedLocusNames=Nmar_1190 {ECO:0000313|EMBL:ABX13086.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13086.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13086.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13086.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13086.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1190; -. DR EnsemblBacteria; ABX13086; ABX13086; Nmar_1190. DR KEGG; nmr:Nmar_1190; -. DR eggNOG; arCOG08080; Archaea. DR eggNOG; ENOG4110ZWU; LUCA. DR HOGENOM; HOG000106576; -. DR OMA; MSEINEF; -. DR BioCyc; NMAR436308:GI3J-1223-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 86 AA; 9703 MW; EC85DAC708E685B1 CRC64; MTLIENVSTE PISQKQMIIE NVSKKLDQET KEQVMPLLEA IMSAQPTVNI KSYQQTQITI AMPKARYDGM GRPQVGNTIE VNLKKI // ID A9A3N8_NITMS Unreviewed; 116 AA. AC A9A3N8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13300.1}; GN OrderedLocusNames=Nmar_1404 {ECO:0000313|EMBL:ABX13300.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13300.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13300.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13300.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13300.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1404; -. DR EnsemblBacteria; ABX13300; ABX13300; Nmar_1404. DR KEGG; nmr:Nmar_1404; -. DR eggNOG; arCOG08702; Archaea. DR eggNOG; ENOG41110BA; LUCA. DR HOGENOM; HOG000107064; -. DR OMA; EAMHPRF; -. DR BioCyc; NMAR436308:GI3J-1439-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 116 AA; 13440 MW; 63ADEED77C0C2D10 CRC64; MDSKIENDLI SEIHLNPIQT KVYLLVTCYG KMTPQTISEK LKISLDDAHT AAKDLMNLGA FIDISETEFE AMHPRFTVVN MYRRMCEREN IEFKRNKIVD SIGVILEKPY DDARTK // ID A9A5Y1_NITMS Unreviewed; 331 AA. AC A9A5Y1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 41. DE SubName: Full=Diphthamide biosynthesis protein {ECO:0000313|EMBL:ABX13459.1}; GN OrderedLocusNames=Nmar_1563 {ECO:0000313|EMBL:ABX13459.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13459.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13459.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13459.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13459.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y1; -. DR STRING; 436308.Nmar_1563; -. DR EnsemblBacteria; ABX13459; ABX13459; Nmar_1563. DR KEGG; nmr:Nmar_1563; -. DR eggNOG; arCOG04112; Archaea. DR eggNOG; COG1736; LUCA. DR HOGENOM; HOG000110987; -. DR KO; K07561; -. DR OMA; FYKPVLT; -. DR BioCyc; NMAR436308:GI3J-1607-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR016435; DPH1/DPH2. DR InterPro; IPR022428; DPH2_arc. DR PANTHER; PTHR10762; PTHR10762; 1. DR Pfam; PF01866; Diphthamide_syn; 1. DR TIGRFAMs; TIGR03682; arCOG04112; 1. DR TIGRFAMs; TIGR00322; diphth2_R; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 331 AA; 36680 MW; 095EC9CCD30376D5 CRC64; MIVIDEKRIF QEIEEKNPAS VSLNGPDGIL PQVQETAKNI TKKFGIPAYV LADTTWGTCD LNSNGSKVLG AEIQFNIGHT INTETYEKNL ILIDAYDDVE FDSVAKKCAE LLKGKVISLV TDSQHLHQVD KVEKILTENG ITVKIGKGKG QLNDGQVFGC EFYPATDLKK EVDAYVFLGQ SNFHASGIAL STNLPTYVLD PYFNEVREVT DFAQKLKKKA TLAIYKAAEA KTFGVIVGLK EGQLSKVFAL KIKEELEAEG KEVQLFALTD ITNDRLRNLK GIDAFIQVAC PRISTDNQFD KPVLSSPQAN ALLKILRNES IEGYLEIPHW L // ID A9A3V5_NITMS Unreviewed; 48 AA. AC A9A3V5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13655.1}; GN OrderedLocusNames=Nmar_1759 {ECO:0000313|EMBL:ABX13655.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13655.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13655.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13655.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13655.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13655; ABX13655; Nmar_1759. DR KEGG; nmr:Nmar_1759; -. DR eggNOG; arCOG08748; Archaea. DR eggNOG; ENOG4110ZWE; LUCA. DR BioCyc; NMAR436308:GI3J-1806-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 48 AA; 5520 MW; 7370B92B466FA436 CRC64; MIDVEEFKMK EILKIEDSDS NDELTVTFSD NKIMKIKIVD GKLVSESN // ID A9A182_NITMS Unreviewed; 239 AA. AC A9A182; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 49. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX12368.1}; GN OrderedLocusNames=Nmar_0472 {ECO:0000313|EMBL:ABX12368.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12368.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12368.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12368.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12368.1; -; Genomic_DNA. DR ProteinModelPortal; A9A182; -. DR STRING; 436308.Nmar_0472; -. DR EnsemblBacteria; ABX12368; ABX12368; Nmar_0472. DR KEGG; nmr:Nmar_0472; -. DR eggNOG; arCOG01686; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000023838; -. DR BioCyc; NMAR436308:GI3J-492-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF12840; HTH_20; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 213 233 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 29 82 WHTH_DNA-bd_dom. FT {ECO:0000259|Pfam:PF12840}. SQ SEQUENCE 239 AA; 26517 MW; BDC4E817F7C044DD CRC64; MSAENPDDVL TEKIKILATD DEKIKSFGEL FTNDSSREIL QLLFNEEMTA NQIAQKTDIS LQLVKYHLNK LQDLGVVKIS KVEKNSKSQD MKVYSATKFS IVIVPPKLSE KTKESKLLVR SFRHIYKVAG LAIATGISGM FSLSQIQNKP IPVQSARQFA AVKEPSMRME SFDESAESFV TSAPNLNTES EDLSAGMEIT EKAIDSGVSG IDLSIPFVII TIILGGLTLY YFLKSRKNI // ID A9A2D4_NITMS Unreviewed; 93 AA. AC A9A2D4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12845.1}; GN OrderedLocusNames=Nmar_0949 {ECO:0000313|EMBL:ABX12845.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12845.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12845.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12845.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12845.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0949; -. DR EnsemblBacteria; ABX12845; ABX12845; Nmar_0949. DR KEGG; nmr:Nmar_0949; -. DR eggNOG; arCOG05022; Archaea. DR eggNOG; COG4095; LUCA. DR HOGENOM; HOG000223827; -. DR KO; K15383; -. DR OMA; MIVLAMK; -. DR BioCyc; NMAR436308:GI3J-977-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR004316; SWEET_sugar_transpr. DR Pfam; PF03083; MtN3_slv; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 40 59 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 65 83 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 93 AA; 10270 MW; D75C490C99A362BE CRC64; MEVDGTLLTI LGVAAGILIL TGWVEQIYKG YKTKSLKDVS KFLMIFISAG AILWLIYGII VEDVFIIGTN LAAIALMMIV LAMKKTYDKK LRS // ID A9A2M9_NITMS Unreviewed; 109 AA. AC A9A2M9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX13268.1}; GN OrderedLocusNames=Nmar_1372 {ECO:0000313|EMBL:ABX13268.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13268.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13268.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13268.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH arsR-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000711}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13268.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2M9; -. DR STRING; 436308.Nmar_1372; -. DR EnsemblBacteria; ABX13268; ABX13268; Nmar_1372. DR KEGG; nmr:Nmar_1372; -. DR eggNOG; arCOG01681; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000144506; -. DR OMA; QVVLCPV; -. DR BioCyc; NMAR436308:GI3J-1406-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR PRINTS; PR00778; HTHARSR. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS50987; HTH_ARSR_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000711}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000711}; KW Transcription regulation {ECO:0000256|RuleBase:RU000711}. FT DOMAIN 4 98 HTH arsR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50987}. SQ SEQUENCE 109 AA; 12384 MW; 6274447C62A61884 CRC64; MLKQETDKLE LKAKLFRGFG DMTRLSILES IIDEEKTVTD ISQKVKQSQS NVSNHLSCLL ECGLVKIRKD GKNRFYSIGD KRVVKLLKQG DDILSDIADG IYSCVNYKK // ID A9A313_NITMS Unreviewed; 158 AA. AC A9A313; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 43. DE SubName: Full=Acetyltransferase {ECO:0000313|EMBL:ABX12141.1}; GN OrderedLocusNames=Nmar_0245 {ECO:0000313|EMBL:ABX12141.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12141.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12141.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12141.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12141.1; -; Genomic_DNA. DR ProteinModelPortal; A9A313; -. DR STRING; 436308.Nmar_0245; -. DR EnsemblBacteria; ABX12141; ABX12141; Nmar_0245. DR KEGG; nmr:Nmar_0245; -. DR eggNOG; arCOG01848; Archaea. DR eggNOG; COG0110; LUCA. DR HOGENOM; HOG000049436; -. DR OMA; TKIGTFV; -. DR BioCyc; NMAR436308:GI3J-252-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR InterPro; IPR001451; Hexapep. DR InterPro; IPR018357; Hexapep_transf_CS. DR InterPro; IPR011004; Trimer_LpxA-like. DR Pfam; PF00132; Hexapep; 1. DR Pfam; PF14602; Hexapep_2; 1. DR SUPFAM; SSF51161; SSF51161; 1. DR PROSITE; PS00101; HEXAPEP_TRANSFERASES; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12141.1}. SQ SEQUENCE 158 AA; 17067 MW; 6F7AD12D8EB94124 CRC64; MVTNFISDKA KIGQNVSIWH FSYVGDNVEI GDNVKIGSLV HIDYDVKIGD NTKIEGSAYI PPLSRIGKNA FIGPAAVLTN DPYPMCDKMI GVTIEDGAII GARAVLKAGV TVGKNSVVAM GSVVTRDVPE NVVVMGSPAT IRKTREEYDK KQKEWLES // ID A9A4F3_NITMS Unreviewed; 275 AA. AC A9A4F3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE RecName: Full=1,4-dihydroxy-6-naphtoate synthase {ECO:0000256|HAMAP-Rule:MF_00996}; DE EC=4.1.-.- {ECO:0000256|HAMAP-Rule:MF_00996}; DE AltName: Full=Menaquinone biosynthetic enzyme MqnD {ECO:0000256|HAMAP-Rule:MF_00996}; GN Name=mqnD {ECO:0000256|HAMAP-Rule:MF_00996}; GN OrderedLocusNames=Nmar_0746 {ECO:0000313|EMBL:ABX12642.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12642.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12642.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12642.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of cyclic dehypoxanthine CC futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step CC in the biosynthesis of menaquinone (MK, vitamin K2). CC {ECO:0000256|HAMAP-Rule:MF_00996}. CC -!- PATHWAY: Quinol/quinone metabolism; menaquinone biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00996}. CC -!- SIMILARITY: Belongs to the MqnA/MqnD family. MqnD subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00996}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12642.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4F3; -. DR STRING; 436308.Nmar_0746; -. DR EnsemblBacteria; ABX12642; ABX12642; Nmar_0746. DR KEGG; nmr:Nmar_0746; -. DR eggNOG; arCOG00654; Archaea. DR eggNOG; COG2107; LUCA. DR HOGENOM; HOG000013596; -. DR KO; K11785; -. DR OMA; PYVADKY; -. DR BioCyc; NMAR436308:GI3J-772-MONOMER; -. DR UniPathway; UPA00079; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016830; F:carbon-carbon lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00996; MqnD; 1. DR InterPro; IPR003773; Menaquinone_biosynth. DR InterPro; IPR030869; MqnD. DR Pfam; PF02621; VitK2_biosynth; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00996}; KW Menaquinone biosynthesis {ECO:0000256|HAMAP-Rule:MF_00996}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT REGION 108 109 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00996}. FT ACT_SITE 146 146 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00996}. SQ SEQUENCE 275 AA; 30596 MW; DD67F127BB56AF40 CRC64; MEISVGHTPD SDDAFMFYGM FTGKVPSPDF KVNHVIEDIE KLNQKATDPQ LDVTAVSVHA CAYIPGYTIL RSGGSFGIGY GPIVTARGQM TIDEIKKCKI AIPGKMTSAF LLLQLMIGKF DYVEMNFSDI PEAVKSGKVD AGLVIHETQL SYAQEGNVKI LDVGEWWDKT TNGLPVPLGI NVMKTDLGMD TIHKFDKYLQ ASIEYGLDNL EDAIEYAMQY SRGKPRDLIE KFVKMYVNKV TVNMGDAGEE SIRRVFEMAK EKDLVPDFEL SIAIK // ID A9A409_NITMS Unreviewed; 46 AA. AC A9A409; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12193.1}; GN OrderedLocusNames=Nmar_0297 {ECO:0000313|EMBL:ABX12193.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12193.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12193.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12193.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12193.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0297; -. DR EnsemblBacteria; ABX12193; ABX12193; Nmar_0297. DR KEGG; nmr:Nmar_0297; -. DR eggNOG; arCOG10955; Archaea. DR eggNOG; ENOG41110R4; LUCA. DR BioCyc; NMAR436308:GI3J-310-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 46 AA; 5212 MW; C1FD0C0DB5BB75C2 CRC64; MAERRTIMID DDVAKKVRNL QAKKIKETAG TVSFSAVINE MLRECT // ID A9A651_NITMS Unreviewed; 268 AA. AC A9A651; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ABX13529.1}; GN OrderedLocusNames=Nmar_1633 {ECO:0000313|EMBL:ABX13529.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13529.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13529.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13529.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13529.1; -; Genomic_DNA. DR ProteinModelPortal; A9A651; -. DR STRING; 436308.Nmar_1633; -. DR EnsemblBacteria; ABX13529; ABX13529; Nmar_1633. DR KEGG; nmr:Nmar_1633; -. DR eggNOG; arCOG00062; Archaea. DR eggNOG; COG0388; LUCA. DR HOGENOM; HOG000222700; -. DR OMA; FRLGIAQ; -. DR BioCyc; NMAR436308:GI3J-1678-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR GO; GO:0016746; F:transferase activity, transferring acyl groups; IEA:UniProtKB-KW. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.60.110.10; -; 1. DR InterPro; IPR003010; C-N_Hydrolase. DR InterPro; IPR001110; UPF0012_CS. DR Pfam; PF00795; CN_hydrolase; 1. DR SUPFAM; SSF56317; SSF56317; 1. DR PROSITE; PS50263; CN_HYDROLASE; 1. DR PROSITE; PS01227; UPF0012; 1. PE 4: Predicted; KW Acyltransferase {ECO:0000313|EMBL:ABX13529.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lipoprotein {ECO:0000313|EMBL:ABX13529.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13529.1}. FT DOMAIN 1 264 CN hydrolase. FT {ECO:0000259|PROSITE:PS50263}. SQ SEQUENCE 268 AA; 30009 MW; D4285363A502A6FD CRC64; MKAAVVQFKA STNKETNLKK IISFIEKAAS KNATLCAFPE FMMFYTNSSQ TPKQLATLAE TINGNFVNTI ANTAKENHVQ VVGSFYEKSR KKDRVYDTSF VIDKTGKVIS TYRKIHLYDA LGFRESDKMA SGSKIAKPVK TTIGKVGMMI CYDLRFPEMS RSLAAAGSEV LVAPSAWVKG NMKEEHWITI NKTRAIENGC YVIAPDQVGN IYCGRSLVVD PYGKILLDMK KKQGIGYVNI DLKKVKQIRK VLPLLKNRRT DIYPTLKA // ID A9A2F0_NITMS Unreviewed; 100 AA. AC A9A2F0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABX12861.1}; GN OrderedLocusNames=Nmar_0965 {ECO:0000313|EMBL:ABX12861.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12861.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12861.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12861.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12861.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2F0; -. DR STRING; 436308.Nmar_0965; -. DR EnsemblBacteria; ABX12861; ABX12861; Nmar_0965. DR KEGG; nmr:Nmar_0965; -. DR eggNOG; arCOG02854; Archaea. DR eggNOG; COG2146; LUCA. DR HOGENOM; HOG000128541; -. DR OMA; WHYNIRT; -. DR BioCyc; NMAR436308:GI3J-993-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 2.102.10.10; -; 1. DR InterPro; IPR017941; Rieske_2Fe-2S. DR Pfam; PF00355; Rieske; 1. DR SUPFAM; SSF50022; SSF50022; 1. DR PROSITE; PS51296; RIESKE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 98 Rieske. {ECO:0000259|PROSITE:PS51296}. SQ SEQUENCE 100 AA; 11197 MW; 391B59A052829D53 CRC64; MAWKKIAEKG DIDAGKGKAF EIDGKQIAIF NQDGYHAIDD LCVHQDGSIA PGKLDGDIVE CPLHFWHYNI KTGELTDYLK DVKLETYPVE ARDDGIYVDV // ID A9A3N2_NITMS Unreviewed; 697 AA. AC A9A3N2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13294.1}; GN OrderedLocusNames=Nmar_1398 {ECO:0000313|EMBL:ABX13294.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13294.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13294.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13294.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13294.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3N2; -. DR STRING; 436308.Nmar_1398; -. DR EnsemblBacteria; ABX13294; ABX13294; Nmar_1398. DR KEGG; nmr:Nmar_1398; -. DR eggNOG; arCOG03235; Archaea. DR eggNOG; COG3593; LUCA. DR HOGENOM; HOG000107108; -. DR OMA; FVWFFSF; -. DR BioCyc; NMAR436308:GI3J-1433-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 55 82 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 697 AA; 80841 MW; 2E468FEF818C826F CRC64; MRLRKFRVRA YRCIHDSGEI TVGDLAAFIG RNESGKTTIL QALTLLNRGE QVSELDLCDE MSDELKEEIR LAEGEFELNQ NEMEMVKEKF PGLPEMKKIR LFRTNQNPKV QYEFDDIELG EEENKGLNSW ENFAKQIIEF LDTIPNHLRI QVNTSFFEGD VPNSQESFDR GMAEFSNQFH VVAMQEPKVI EEWEKIYESP ESQFSNLLSG KSEKTALQNF IESELHPRFV YFSDYKKIYG NINLNEYMRE EKGERADSIE YVEEFDKAET VRNLFYLAEL DMNELEEVKE SPSKCIKLLN AASNRLTSKL NPAWKGDPIH VDLRYNPGNI MSVVISDVHK DGTVTNTGLL NRRAEGFKWT FSFIVNFAAE TQRAELKEAI LLLDEPARNL HPTQQMGISD LLKNLAGSNQ VLYATHSPFM IFDYTPGNLL VVELDKRKHL SRIFYDYWNA DDKTLTPILY GLSRGQVESI VDREIGTNSR PVIIVETMSD SMYLNAFDKF LQDPNISMNP LNVVAAYNKN SVLPLAIFYR NHGYRTFILL DNTEESKQIS AQLVSNEFSP IQTIFFELEG KKLESIEDYI VLEDYLHPVN QTYEIKLRRE GFSNLAPEDV LSKEGKGNLE KLKKIWQEHS DDDWGQFNNE EITRYICEKI SLEETSFLSD KTKDQFRSLY RLIAERIRQY QNVNAKSDLD KFQKAKA // ID A9A5U2_NITMS Unreviewed; 1708 AA. AC A9A5U2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13097.1}; GN OrderedLocusNames=Nmar_1201 {ECO:0000313|EMBL:ABX13097.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13097.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13097.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13097.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13097.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13097; ABX13097; Nmar_1201. DR KEGG; nmr:Nmar_1201; -. DR eggNOG; arCOG08647; Archaea. DR eggNOG; ENOG410Z3CW; LUCA. DR HOGENOM; HOG000105415; -. DR OMA; ETWTANE; -. DR BioCyc; NMAR436308:GI3J-1234-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 1708 AA; 180898 MW; A68D2434509E9EDC CRC64; MYNEIGRKIT SLTLMTIMVA GGLTFAIPGV MPEAMAANAN LFVSAENSQF DNYMSGPQVI EVVVIDSDIN DTDEAKGEPD VTVNGKNLRM VQAVDGNWYG YFADRDQAQI ADSTATTIGS GLDFGVFCAA SSGTAFLGFS TTETDGIAVP ITVANATATG NGTQTGSNSG GAITTTCAAN TLDASTANGT INVVREAKDP VAVSGSVSAG QIGLKNGTNN GANWPFIQLY ELNPTGNVVV QYNKGGGVQS TTLTFDTVDQ FAELSLDRAV YPRVSQVHAT ITDLWLNIDP TDEDSWTFAT NTKNTTSSFN VDTFYQVFDE NGASGGSALT LRTTLPNLMC EDNCVLKLDV DAQSSGTPVV TIQDNGDSIL TQLNSTANTN NASAFGISAE TGELGVGSIP VTITEQGPNS GVFGTYDESD TSVLKITDNA KRGTSASLDY NETPQTILVG FSFASIDIQP VDDEWTSGEE IPVVIVDADQ NKNSRVDEDL DLNNPDVTLI PALATGDPFT IDEGGTPSLI FTNGTNGDDS IFDTGAINNT AAGQVGNFTL NINVTAFTGA TNITSTESVD TFSKRLISAQ TANSSANFDV DFAIIDLGSA TMKTLKETLV DEDNTTIGFN FFNYDVKSLG ADTVSIALLN TTGNILPWVN NDTRNIDKNN AILLVSNSTE SQDYIDLTNA VSDAIYGSTN DDDNVNVGLA MYFTGVDDIA AKEVIVMDFF SFGFTDDGAQ SGERFANQII RIEAEETGDN TSIFEGSLEY VMVNQINIQD AGTFAGITPI ADDPTFIVIE DLTDEDAPRV NYNDLGADGV TTPVSDQEDA PSHSGVVSLD ADSYKIADTV VITVEDLDLN VDSDLIDIFT VVSDTGADTF DVVGSATTQD LSFGELGRLL DVSFNDVVWK TAQGTCDDNQ ASSDTGLGAT GFTLVETGKA SGVFVGDFQI PVDWCRSDNA TPETITGLDI EVNYVDFRDA SGEIIQVSDS AGIRAHTGSV SLDRTVYPVP FGTVGESNAA ANASPNGRSV FPIHATGVTS TIDSTEELAN GDLTIHVRIN DPDFDENPSG EDTMDQDDAL KISVIRGSDS VVLGYAGASE RTGKIDVGGN NGTISNIRSF GEMVEIAPDA GVFELELDIK FTDGPASAKC NSHDTIYTAT DGTTGKADTN RFDDGAPSGQ EYCILQGDIL QVEYTDPADA SGDANTVTDS ATFDLRNGVL QSDKSVYIIG SDMILTLIEP DFDLDNDSAE TYDLDLIEWD SDAATTTMGN KGVTGAAAAF DPEPTDFRET GDSTGIFQIV IEIPEELDGD RLERGEEIIL EYTDWGPSGS DYVGDEDEDV NLTIYTSNFG ATVELDQKVY TWTDKVYITI VAPDHNFDSF LVDEIGESDR DPIKVSTRGF DLDNYKLVET GTDTGIFTGE VILTGFTSHD ADGDGTTGDA KGTTSGTGPT DGLLATDDDD GLTISFEFSE DETIVGSALI RWNIGEVQWL EASYPASGTG VVRVIDPDMN LDPEAVDNFN VDVWSDSDAG GIDLTLTETN EATGIFEGTV FFTVHNESSG HRLRVSEGDT VTAEYEDNTL PDPYTTADEL DITATSLIGT VVPPLERAPA ANLRAVDAFG NSLDSVSVDQ QVQISADLAN GQDREQSFAY LVQIQDANGV TVSLAWITGS LSSGQSFSPA LSWIPTEAGT YTATAFVWES VDNPTALSPP VSTTVNVS // ID A9A1X5_NITMS Unreviewed; 150 AA. AC A9A1X5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12096.1}; GN OrderedLocusNames=Nmar_0200 {ECO:0000313|EMBL:ABX12096.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12096.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12096.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12096.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12096.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0200; -. DR EnsemblBacteria; ABX12096; ABX12096; Nmar_0200. DR KEGG; nmr:Nmar_0200; -. DR eggNOG; arCOG08634; Archaea. DR eggNOG; ENOG4110ZWP; LUCA. DR OMA; FHAPENN; -. DR BioCyc; NMAR436308:GI3J-204-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 150 AA; 17050 MW; 4491CD9B764742C9 CRC64; MNRIILFSSI FVMAIFLSLS VDSAFAHPHS GQIMVNDHTH TSQTEIIPFN GMMGLEKSTL VFHAPENNDL PWGFVEGKIA NHVEGYPVII QIFQNNDAVH FAQTDVGEDG TYEYKFRVLH SENGDTKKIF DGDYSVTIFK VVYIYQENFI // ID A9A2F1_NITMS Unreviewed; 237 AA. AC A9A2F1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; DE EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; GN Name=nadE {ECO:0000256|HAMAP-Rule:MF_00193}; GN OrderedLocusNames=Nmar_0966 {ECO:0000313|EMBL:ABX12862.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12862.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12862.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12862.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + deamido-NAD(+) + NH(3) = AMP + CC diphosphate + NAD(+). {ECO:0000256|HAMAP-Rule:MF_00193, CC ECO:0000256|RuleBase:RU003812}. CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from CC deamido-NAD(+) (ammonia route): step 1/1. {ECO:0000256|HAMAP- CC Rule:MF_00193}. CC -!- SIMILARITY: Belongs to the NAD synthetase family. CC {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003811}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12862.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2F1; -. DR STRING; 436308.Nmar_0966; -. DR EnsemblBacteria; ABX12862; ABX12862; Nmar_0966. DR KEGG; nmr:Nmar_0966; -. DR eggNOG; arCOG00069; Archaea. DR eggNOG; COG0171; LUCA. DR HOGENOM; HOG000238069; -. DR KO; K01916; -. DR OMA; WYGDLAS; -. DR BioCyc; NMAR436308:GI3J-994-MONOMER; -. DR UniPathway; UPA00253; UER00333. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003952; F:NAD+ synthase (glutamine-hydrolyzing) activity; IEA:InterPro. DR GO; GO:0008795; F:NAD+ synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00193; NadE; 1. DR InterPro; IPR022310; NAD/GMP_synthase. DR InterPro; IPR003694; NAD_synthase. DR InterPro; IPR022926; NH(3)-dep_NAD(+)_synth. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF02540; NAD_synthase; 1. DR TIGRFAMs; TIGR00552; nadE; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00193, KW ECO:0000256|RuleBase:RU003811}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00193, KW ECO:0000256|RuleBase:RU003811}; KW NAD {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003811}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00193, KW ECO:0000256|RuleBase:RU003811}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 227 NAD_synthase. {ECO:0000259|Pfam:PF02540}. FT NP_BIND 12 19 ATP. {ECO:0000256|HAMAP-Rule:MF_00193}. FT ACT_SITE 14 14 {ECO:0000256|HAMAP-Rule:MF_00193}. SQ SEQUENCE 237 AA; 26821 MW; D51001CC82C3271E CRC64; MEKNHAEGLI LGLSGGIDSA VLAYICKRKF ANKTTALIMP DTAITPKTET DDALKMISLT GIQYKLLDIN PIVNEYSMYL EPNERAKGNL RARVRTNILY YYANAKNYLV LGSSDKSEYL IGYFTKFGDG ASDITPIVSL YKLQVREIAK YLGVPENVIL KKSSPHLWKD HEAENELGIS YEEVDSILYC LFEKKLSTED TQKTTGIEMS TIEKIQELNK NSEHKRLPAQ KPDRDSR // ID A9A5W8_NITMS Unreviewed; 195 AA. AC A9A5W8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13446.1}; GN OrderedLocusNames=Nmar_1550 {ECO:0000313|EMBL:ABX13446.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13446.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13446.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13446.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13446.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1550; -. DR EnsemblBacteria; ABX13446; ABX13446; Nmar_1550. DR KEGG; nmr:Nmar_1550; -. DR eggNOG; arCOG08828; Archaea. DR eggNOG; ENOG411100M; LUCA. DR OMA; NITHYEV; -. DR BioCyc; NMAR436308:GI3J-1593-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 9 29 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 195 AA; 22655 MW; 66108F8DA0E33631 CRC64; MEHVSNKVII PITGVIIAII AIAVVMINFE QPETMEIEDT IDREIQPVEE TTPEIQEKLD EIKKINLENT YSPKDREWIT SGPFQIDRSE YLLGEKIFLR IGGLDYKEKG QVVFLRPLNI THYEVYWSIP FDGADKPAFN YYLQPQLSKI KGYCSVDDFV GDWRVVFRGT DYQNLEFKII EDILPGDENN YQPVC // ID A9A1D4_NITMS Unreviewed; 265 AA. AC A9A1D4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 53. DE SubName: Full=Phosphonate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ABX12769.1}; GN OrderedLocusNames=Nmar_0873 {ECO:0000313|EMBL:ABX12769.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12769.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12769.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12769.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12769.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1D4; -. DR STRING; 436308.Nmar_0873; -. DR EnsemblBacteria; ABX12769; ABX12769; Nmar_0873. DR KEGG; nmr:Nmar_0873; -. DR eggNOG; arCOG00173; Archaea. DR eggNOG; COG3639; LUCA. DR HOGENOM; HOG000095580; -. DR KO; K02042; -. DR OMA; WVVQPVR; -. DR BioCyc; NMAR436308:GI3J-901-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:InterPro. DR GO; GO:0015604; F:organic phosphonate transmembrane transporter activity; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR InterPro; IPR005769; PhnE/PtxC. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR TIGRFAMs; TIGR01097; PhnE; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU363032}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363032}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 65 87 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 99 121 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 127 146 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 200 219 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 225 244 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 61 243 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 265 AA; 29146 MW; 67160D82A3F103EA CRC64; MLMTPKNNII IGIIIALLVA ASYNVDANPI DFVQGLPNLG IVAEEMLEVD SKYIPTALWA MFETIQMAFI GTIVGVAIAL PLSMFAARNL NSKYVYAPIR ALLAAIRTFP SILWAILFVI MVGLGPFAGV LAIIMYTIGF VAKLQYEAIE TIDSDPMDAV SSIGVSKWQL IRYVVIPESA SHLLSQMLYM FDYNVRQTSI LGLVGAGGIG FYIINYIKFF EYGKAAVFML VVLAAVLVID WVSVKIRDKY IIKSQHGMEV TAKSN // ID A9A211_NITMS Unreviewed; 202 AA. AC A9A211; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12424.1}; GN OrderedLocusNames=Nmar_0528 {ECO:0000313|EMBL:ABX12424.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12424.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12424.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12424.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12424.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0528; -. DR EnsemblBacteria; ABX12424; ABX12424; Nmar_0528. DR KEGG; nmr:Nmar_0528; -. DR eggNOG; arCOG08739; Archaea. DR eggNOG; ENOG4111079; LUCA. DR HOGENOM; HOG000023852; -. DR OMA; KFTFPYS; -. DR BioCyc; NMAR436308:GI3J-550-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 202 AA; 23281 MW; 71460D09D0136D50 CRC64; MSELKLSYSG YVCAPYLHTH ESVELKESWM KSKNIERLYF VTGTFSSESK PYFADSTNHY ILAKFKDSSK IADDLVEHNQ EKTSFVFNVK DDLFQHEVIG DVNFVSVYYL EYNDDEDISE VADLLVKKDQ IESAGLGNME TFCKNPSKFT FPYSENIIVI EVASEKSHQS VKKYCEQTRR DANRKGLSMT NLMSLSILEQ LK // ID A9A166_NITMS Unreviewed; 2764 AA. AC A9A166; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12352.1}; GN OrderedLocusNames=Nmar_0456 {ECO:0000313|EMBL:ABX12352.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12352.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12352.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12352.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12352.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0456; -. DR EnsemblBacteria; ABX12352; ABX12352; Nmar_0456. DR KEGG; nmr:Nmar_0456; -. DR eggNOG; arCOG02565; Archaea. DR eggNOG; COG5276; LUCA. DR OMA; MRILNAT; -. DR BioCyc; NMAR436308:GI3J-475-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 91 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 167 186 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 2764 AA; 291259 MW; 4C79CF2A1AD92EAA CRC64; MKWEIPLLVS FVFLLGIFSS FPVVDSNFTI DENGLKHYVL TPEKNISSFD VVATSLSKYN REVDFDEQDP YFVFFLFVLL LVLLYRSNFV LQVKQSVLKT FASDYINLFL KNNFAQTLFS ENKINLKEIF VILSSSNTKL QNNSTVLYRN CSNVLINSKK FFVSKKIIVV LLLFVVLIVP VYNHAYAASG DITKSLVDSF EFDNQAGSYP DIIQIDSNTF AISYQGQGSG VLSGYIQTFD IDSLGNISSL NTLQFDPDAI VYTELVAVDS DTFAIVYRST DADGFIHTVD ITGAGVITNG TNYEFDTTAG TDPQIVAVDS DTFAVVNQGG GADGWLRTLN ISSDGLTISE EDSFEFDTNE GRDNDIIQVD SDTFLIVYRG VEADGFAKTI NISTDGTINS VEDTLEFEPT FDAYHNAIAQ VDSDTFVVAY RDIDSDGRLA TLDVTSSGSI TLVETYEYDT NTAQHPDIKR LDDKSFVIAY QGAGSDGFIK TIPITASGNI GTVTDTYEFD TGNGRFPSII SIDGNTVAIA SRGGGNDGFL DTIFIDVELA GTDTPSFVEV DDSSKTAIIM ASSTPVVVSE GLNSINPELF PASTVNPTHG FEMGIYASST PIPAHEVTIS TIKTNDTFEF DTADAETPDL VQVDTDTFAV VYKGTDNDGF IKTVDITSTG TITDTGNSLE FDTADGWTPN IVPVDTDTFA VVYNGTDSDG FVKTLNISGV GAITDTGNSL EFDIADGLYP DIVAVDSDTF AIVYTGTDTD GFIKTLNISG VGAITDTGNS LEFDTGTGIF PDILAVDSDT FVISYTGNGN DGFVKTVDIT GAGVISSVID TLEFDTSTAY ETSLVKIDDD TFAVAYRGPG SDGFVKTFDI DSSGNINNSI TDSLEFDTGN GREPDMVSLG SGNYGIAYRG NSNDGFFVIV TIDDAGNIGN SVVESLEYNT SNGYFPSLIG VDLNTFAIAH RGNAEDGFIT TIDTSNELAF SDSDTLDVVE SVDLIKKYAI FGTSAPIFEH SVITTGNSII DDANSTPLVV SSAITLKGYF LNANSTPNVS DSGNTVAQYT RTASDILDVA EQNTEFKNYT ISNSTTPDIV SSGIISFSLS ANSTPLLTSN ATSSADISSN STPLLSSNAT TVAMFVLDPS TIPSVSSTAT VAFTLSANST PLLTSNATSS ADISSNSTPV LSSNATSTVM RILNATSIPS LFSNATSSAD ISSNSTPVLS SNATSTVMRI LNATSIPSLF SNATSSADIS SNSTPVLSSN ATSTVMRILN ATSIPSLFSN ATSSADISSN STPVLSSNAT STVMRILNAT SIPSLFSNAT SSADISSNST PVLSSNATST VMRILNATSI PSLFSNATSS ADISSNSTPV LSSNATSTVM RILNATSIPS LFSNATSSAD ISSNSTPVLS SNATSTVMRI LNATSIPSLF SNATSSADIS GSSTPFLSSN ATSTVMRILN ATSIPSLFSN ATSSADISSN STPVLSSNAT STVMRILNAT SIPSLFSNAT SSADISGSST PFLSSNATVS LSGSSTPFLS SNATSTGMFD ISSNSTPFLS SNATVSLSGS STPFLSSNAT STVMRILNAT SEPVISSNAT TVAMFNLNAT SIPSLFGNAT VSLSGSSTPV LSSNATYGTL VASANTTPFL SSNATVSLSG SSTPFLSSNA TSTVMHILSA NSSPVVSSNA ITTGMFNISA NSTPVLSSNA TSTVMRILNA TSEPVLSDDA QITGMFNISA NSTPVLSSNA TSTVMRILNA TSEPVLSDDA QITGMFNISA NSTPVLSSNA TSTVMRILNA TSEPVLSDDA QITGMFNISA NSTPVLSSNA TSTVMRILNA TSEPVLSDDA QITGMFNISA NSTPVLSDNA QVTGMFTINA NSTPVLSDNA QVTGMFTINA NSTPVLSDNA QVTGMFTINA NSTPVLSDNA QVTGMFTINA NSTPVLSDNA TSDTVFALLT SDAPSLTESI DQIERYAINA IDVPVISESV GKPKHSKLLA TSTPRITEFG LIAGHYTLET TSIPEISHSG NIPPRITSAN VTSTTQIDIA FERNIDRKSV KPANFVLTDP SATIKGVKTT NNVITLRLDS AITSGQTPTI AIAGNAVKDT DGNTVDSVTV TSVDKVPPKV KKAYATTKSS IVIIFDKNVT SQLSDYSSLQ IPTGTSKTIS GHTASDNVVT LTVNSADITA RAHGTITISS GLTDTNGNSF NTNHNPVSVI SNIEEAPVEL DEDFTDLVIT TEEIEIKEIL VKTNVKAKLD LSKSPTKTTV TENSVTKNRV QITNEMKITS SDGTDEEVQI VIPKDVLVSG PQDKFTGSID LPEPKTNNSC PINPDGSQIV SCIAIGLSDD ELTFNKAVKI TIPGEGSLTP YYSTDNTTWN AISTLCDAAN TAEVNGVSIS SDGTRECYFV DGSDMIIWTT HFTVFGTLSS TSTSSSSGGG SSGDNSAPSI TTSIGPSITD SGLGGIIGNT DQPLVPGAEI KNYPLVFDGI GYDENSFNSV HTAVIETEQP LNVILSLYEN SGAQNIEHVE MYVNHFGPRV LNDRTETAII YDKFTGIEIL DPYGLISDAT VLPTLLDTQS QFYFQVFFEE EIEQSDVLFR VWDKNRNSVE LHLSDALMVV KGESSSEERN VTESGIVSPT DPSESEIVSP ADPSESEIVS PADPSESEII STELPPESEK IKIPSEPELG TYVGIPMDPE PGIDVNLQMD PEPGIDVNLQ MDPEPGIDVN LQMDPEPGID VNKPKSLLDS ISEFFEVLTK LLKF // ID A9A1X2_NITMS Unreviewed; 121 AA. AC A9A1X2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12093.1}; GN OrderedLocusNames=Nmar_0197 {ECO:0000313|EMBL:ABX12093.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12093.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12093.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12093.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12093.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12093; ABX12093; Nmar_0197. DR KEGG; nmr:Nmar_0197; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000106406; -. DR BioCyc; NMAR436308:GI3J-201-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 121 AA; 14143 MW; 8F4CE72A45AAD28E CRC64; MDYEKFCSQI LDADPKIRFA TVYDEWAVHV GGGMREGVKN LLSDHAEKEL VNLSILDWKA RKDMSKWLGK TIYTLGEYDK VKRFSFYLGD DHLLLVSTEK DDDTNVVVDE VIRLYYENQD K // ID A9A3W5_NITMS Unreviewed; 439 AA. AC A9A3W5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 51. DE SubName: Full=Amino acid permease-associated region {ECO:0000313|EMBL:ABX13665.1}; GN OrderedLocusNames=Nmar_1769 {ECO:0000313|EMBL:ABX13665.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13665.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13665.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13665.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13665.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1769; -. DR EnsemblBacteria; ABX13665; ABX13665; Nmar_1769. DR KEGG; nmr:Nmar_1769; -. DR eggNOG; arCOG00009; Archaea. DR eggNOG; COG0531; LUCA. DR HOGENOM; HOG000027235; -. DR KO; K03294; -. DR OMA; HAFGAYA; -. DR BioCyc; NMAR436308:GI3J-1816-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015171; F:amino acid transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR002293; AA/rel_permease1. DR PANTHER; PTHR11785; PTHR11785; 1. DR Pfam; PF13520; AA_permease_2; 1. DR PIRSF; PIRSF006060; AA_transporter; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 50 70 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 91 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 126 145 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 152 174 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 186 207 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 228 250 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 270 302 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 323 341 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 347 369 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 389 405 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 411 429 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 439 AA; 47511 MW; EFB1E06A0317D4EC CRC64; MNLVRKQQMS ELDRHMGLFH LTMYGVGLIL GAGIYVLIGE AAEFAGNSMW ISFLMAAIVA MFAGLSYAEL SALYPKAAAE YTFVKNAFKN NFFGFIIGWL TAITGVIVAA TVSLGFGGYL TQFIDLPITI SAVFLIIILS IVNFIGIRES AWANTIFALI TAAGLVLIIF LGFSMEPIEP IDYFEAPTGM TGIILAFVLI FFAFIGFEDM ANVAEEVRKP KKTIPRAIIL SIVITGIIYI LVSLASIRIL NWENLALSSA PLADVAHSAI GVNGSITLSL IALFATASTV LITLVANARI LYGMAKSNSL PKFLCKVHPK TKTPWLAVIG TLVASVGFAF VGDIVVIANI VVFAVVITFA AINLAVIVLR YTEPVLERPF RVPVNVGKFP VLPLFGFGTT IYMALQFEVE VILVGLVIIA IGSVLYVILK RRKDFMNSD // ID A9A3G4_NITMS Unreviewed; 436 AA. AC A9A3G4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12896.1}; GN OrderedLocusNames=Nmar_1000 {ECO:0000313|EMBL:ABX12896.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12896.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12896.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12896.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12896.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1000; -. DR EnsemblBacteria; ABX12896; ABX12896; Nmar_1000. DR KEGG; nmr:Nmar_1000; -. DR BioCyc; NMAR436308:GI3J-1028-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 436 AA; 49713 MW; 7D18B0CC2C5DDC13 CRC64; MGLSSPNLNG LRVFPPSSLL DGSLGFFEFF RYETKSLRDE SNVLKDDFLE LIPKSTKIKK SSKIKKSELA KQFDEFCKIL DRTLFIKNTK DELSDIKWAR IDNFCKLLRL IERSDERKIR WALYYIFTAG KTKISKQNLN ELLNNFKIKN LDKILAKIIK TETLSGLDAT YDGKTFTINH DSGDKVVLHY LADAIEEASR RSPGELEEEI LELIDEGSYS NQEISQALLI DEGLVSRTIS KLRDQDKIVL SSFGQRGARY FTTNCDNCPF GTTKASCRKE AISYITSAFM KDFGLDLSAN DFESVETNQA LLKIKRIVMM ARKEKNTKLE RNLGENLDIL LSKVVDKFTE IETPDKKSLN VPEIKMQVTS NMSKLPMLYQ LGLKKGARGG INLMDEILHL ASKSIKKEDR IKIKKHALNE SNNFLKNIGL EQKSSK // ID A9A3Z9_NITMS Unreviewed; 283 AA. AC A9A3Z9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 48. DE SubName: Full=Polyprenyl synthetase {ECO:0000313|EMBL:ABX12183.1}; GN OrderedLocusNames=Nmar_0287 {ECO:0000313|EMBL:ABX12183.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12183.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12183.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12183.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the FPP/GGPP synthase family. CC {ECO:0000256|RuleBase:RU004466}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12183.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Z9; -. DR STRING; 436308.Nmar_0287; -. DR EnsemblBacteria; ABX12183; ABX12183; Nmar_0287. DR KEGG; nmr:Nmar_0287; -. DR eggNOG; arCOG01727; Archaea. DR eggNOG; COG0142; LUCA. DR HOGENOM; HOG000109741; -. DR KO; K02523; -. DR OMA; INIVRIM; -. DR BioCyc; NMAR436308:GI3J-297-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0008299; P:isoprenoid biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.600.10; -; 1. DR InterPro; IPR008949; Isoprenoid_synthase_dom. DR InterPro; IPR000092; Polyprenyl_synt. DR InterPro; IPR017446; Polyprenyl_synth-rel. DR PANTHER; PTHR12001; PTHR12001; 1. DR Pfam; PF00348; polyprenyl_synt; 1. DR SUPFAM; SSF48576; SSF48576; 1. DR PROSITE; PS00444; POLYPRENYL_SYNTHASE_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU004466}. SQ SEQUENCE 283 AA; 32320 MW; D416A91EAA1C3823 CRC64; MDRKNIEINP LLETYGEYIK KIDQALDKEL DLYSESEFIE PLKYSLEGGK RIRPIILTLS AESIGKVDDN TFAASCAVEF LHMESIIHDD IIDNETMRRQ KDPFHIKYGY NTSVLTGDFV LGLILAVCSR LDNPRITKDL ATTAMLMSEG EMIENRLETS EDVTFDDYLK VIEYKTATAF EVAARTGAII ANGTEEQIEG LTEYGKNIGI AYQIRDDLLD WKNEDKLFNI LIKKSSDPRD VFNKMEELLK EYSEKARTSL RKIPDSDAKI NLDNLIKFTS FKA // ID A9A1Y9_NITMS Unreviewed; 206 AA. AC A9A1Y9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=SNARE associated Golgi protein {ECO:0000313|EMBL:ABX12402.1}; GN OrderedLocusNames=Nmar_0506 {ECO:0000313|EMBL:ABX12402.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12402.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12402.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12402.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12402.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12402; ABX12402; Nmar_0506. DR KEGG; nmr:Nmar_0506; -. DR eggNOG; ENOG4102TK5; Archaea. DR eggNOG; ENOG410Y416; LUCA. DR HOGENOM; HOG000108903; -. DR OMA; WMAMSWV; -. DR BioCyc; NMAR436308:GI3J-527-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 49 67 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 129 149 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 169 192 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 206 AA; 23448 MW; 161B1490F2C2DCE1 CRC64; MVDIFEFFAE FSYFGIFLVL ILVNASPILM PPSWIVLTSF YLLDPSLNIV FLAMVGATGA TIGRFFLKKI SGLFRKFVGE EQKSNLDIIG DYLNHKKYGY LLASFLFGAT PLPSNMLFIT YGLMRAKSIG IYIGFWFGRT ISYIIMIYFG NAVLQPFLEI FEDRLTGILL IDGVGIGVIV LFASINWTVL ITQRKIKFVK PKIWRF // ID A9A452_NITMS Unreviewed; 265 AA. AC A9A452; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 44. DE SubName: Full=ExsB family protein {ECO:0000313|EMBL:ABX12236.1}; GN OrderedLocusNames=Nmar_0340 {ECO:0000313|EMBL:ABX12236.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12236.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12236.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12236.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12236.1; -; Genomic_DNA. DR ProteinModelPortal; A9A452; -. DR STRING; 436308.Nmar_0340; -. DR EnsemblBacteria; ABX12236; ABX12236; Nmar_0340. DR KEGG; nmr:Nmar_0340; -. DR eggNOG; arCOG00043; Archaea. DR eggNOG; COG1606; LUCA. DR HOGENOM; HOG000226513; -. DR KO; K06864; -. DR OMA; DKPAQPC; -. DR BioCyc; NMAR436308:GI3J-355-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR005232; CHP00268. DR InterPro; IPR018317; QueC. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF06508; QueC; 1. DR PIRSF; PIRSF006661; PP-lp_UCP006661; 1. DR TIGRFAMs; TIGR00268; TIGR00268; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 265 AA; 29696 MW; 762506E051FEB821 CRC64; MTKLNELENW FADKNKVMIA LSGGVDSALV AYAAYQKLGD FAIAVTADYK TLSEEELQTA KQICSEIGIT QFFLDYDELE NEEFTKNDST RCFHCRLELG VHLLKLAKEH HVDVIVDGTN LDDLGEYRPG IDALRQNGIR SPLVETNLSK SQIRHIAKSV GLSVHDKPSN SCLASRIPWG QRVTAERLAR IEFGETVVKQ LTKVKQVRVR DFNGSAKIEV EKNDISEFNN LVLDKITEKL KLIGFTSVEI DPEGYKPGKI NVIAD // ID A9A334_NITMS Unreviewed; 55 AA. AC A9A334; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12162.1}; GN OrderedLocusNames=Nmar_0266 {ECO:0000313|EMBL:ABX12162.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12162.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12162.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12162.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12162.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0266; -. DR EnsemblBacteria; ABX12162; ABX12162; Nmar_0266. DR KEGG; nmr:Nmar_0266; -. DR eggNOG; arCOG05278; Archaea. DR eggNOG; COG5466; LUCA. DR HOGENOM; HOG000109652; -. DR OMA; YSKEAIM; -. DR BioCyc; NMAR436308:GI3J-276-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR009409; DUF1059. DR Pfam; PF06348; DUF1059; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 55 AA; 6515 MW; 572FA6B2FC083EA1 CRC64; MTELKCRDYG FECDFVADGE TEQVIENFRN HTEEEHGIDY SKEAIMQFLL RKQGL // ID A9A3G6_NITMS Unreviewed; 130 AA. AC A9A3G6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12898.1}; GN OrderedLocusNames=Nmar_1002 {ECO:0000313|EMBL:ABX12898.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12898.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12898.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12898.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12898.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12898; ABX12898; Nmar_1002. DR KEGG; nmr:Nmar_1002; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000023845; -. DR BioCyc; NMAR436308:GI3J-1030-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 130 AA; 14502 MW; 9E6B47D902DE32A4 CRC64; MAILSVNDVQ RLDAACVELS NEEKVRHVGG ISELGRLVAG GFKKGVTPLL SDDKVRMVYM QMQLDFNMRQ ELDDILGPID YITSRRTNQL IISVPIGENL VLITAEPDAD DKKIIKKAEE IFDEITISTI // ID A9A5H1_NITMS Unreviewed; 106 AA. AC A9A5H1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12682.1}; GN OrderedLocusNames=Nmar_0786 {ECO:0000313|EMBL:ABX12682.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12682.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12682.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12682.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12682.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0786; -. DR EnsemblBacteria; ABX12682; ABX12682; Nmar_0786. DR KEGG; nmr:Nmar_0786; -. DR BioCyc; NMAR436308:GI3J-812-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 106 AA; 12509 MW; 0DA222F592E4E802 CRC64; MVRVFYSQKT EDLIEKMTLT NWRQHVQQQL GQEHQDMSDN WKMCAIGERI KIEGKDLESI KDLSPEAIRL GYEFSVAMQE KDNEKALEII TKIEQLPTIW RNEING // ID A9A3A3_NITMS Unreviewed; 128 AA. AC A9A3A3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12532.1}; GN OrderedLocusNames=Nmar_0636 {ECO:0000313|EMBL:ABX12532.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12532.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12532.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12532.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12532.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0636; -. DR EnsemblBacteria; ABX12532; ABX12532; Nmar_0636. DR KEGG; nmr:Nmar_0636; -. DR eggNOG; arCOG08654; Archaea. DR eggNOG; ENOG4110ZS5; LUCA. DR HOGENOM; HOG000105594; -. DR OMA; EMFSWIG; -. DR BioCyc; NMAR436308:GI3J-661-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 128 AA; 14829 MW; F91342B055DD3A1A CRC64; MRDSETFGVE KGHGEEVVAW LNEHAKTQKI KLEARLYGYS VATKNFGEFE MFSWIGDVQV ARKLIIKASK RFKVKVIEGG YKPKDKVLSM KRFDFAKVKR GDKTVGQLKF SAPRFGNSQW EIEDEERH // ID A9A5P0_NITMS Unreviewed; 229 AA. AC A9A5P0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13045.1}; GN OrderedLocusNames=Nmar_1149 {ECO:0000313|EMBL:ABX13045.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13045.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13045.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13045.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13045.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1149; -. DR EnsemblBacteria; ABX13045; ABX13045; Nmar_1149. DR KEGG; nmr:Nmar_1149; -. DR eggNOG; arCOG10350; Archaea. DR eggNOG; ENOG41122U8; LUCA. DR BioCyc; NMAR436308:GI3J-1181-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 229 AA; 25408 MW; 0ACD94C5E8FAF4F7 CRC64; MKLIWIILPL IFLLTIDVEK SFADDSPAHD ECINMNNTKN ILCDETFVPQ SVSIFSVVDS SVGIFEDPDT KLPVVDLGTF YGIGGNGTIP DMINVYRDSV LWKTTTKETG IAPSTSHSEW QLPQTFFFNE LPGKYKLVLI TNDVETLVYE FLVVQIIEKL ENDNLESDVN VDPPASDLAP LKQVASGILP DDILCKENLQ LVLKTTDNSP ACVSSNTAEK LIQRGWAKN // ID A9A1S8_NITMS Unreviewed; 247 AA. AC A9A1S8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:ABX12049.1}; GN OrderedLocusNames=Nmar_0149 {ECO:0000313|EMBL:ABX12049.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12049.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12049.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12049.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12049.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1S8; -. DR STRING; 436308.Nmar_0149; -. DR EnsemblBacteria; ABX12049; ABX12049; Nmar_0149. DR KEGG; nmr:Nmar_0149; -. DR eggNOG; arCOG04817; Archaea. DR eggNOG; COG1083; LUCA. DR KO; K07257; -. DR BioCyc; NMAR436308:GI3J-152-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR003329; Cytidylyl_trans. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF02348; CTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotidyltransferase {ECO:0000313|EMBL:ABX12049.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12049.1}. SQ SEQUENCE 247 AA; 28476 MW; 7EC9CCA06D26E014 CRC64; MNSAAIVSVR NSSTRLPNKA IMEIKNNFTS IDVVIQRAKK TELPVIIATS TSKEDDIFED IAKKNDVEIF RGPLINKIKR WYECFNKFGI QYALLVDGDD LSYSYDIGKR AISELKNKSV DMITHPKDIV TGFFTSAINE KGIKKLFSVA PTDEINTDVI TRYIEKANLT TDIVPLKDFE KNENVRFTLD YKEDLEFFKK LYENLDILSS GKEILDFLNN NKHLIQINFH KQKEFLDNQA KFNESVK // ID A9A1G7_NITMS Unreviewed; 239 AA. AC A9A1G7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Protease inhibitor Kazal-type {ECO:0000313|EMBL:ABX13146.1}; GN OrderedLocusNames=Nmar_1250 {ECO:0000313|EMBL:ABX13146.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13146.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13146.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13146.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13146.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G7; -. DR STRING; 436308.Nmar_1250; -. DR EnsemblBacteria; ABX13146; ABX13146; Nmar_1250. DR KEGG; nmr:Nmar_1250; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-1283-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR002350; Kazal_dom. DR Pfam; PF00127; Copper-bind; 1. DR Pfam; PF00050; Kazal_1; 1. DR SMART; SM00280; KAZAL; 1. DR SUPFAM; SSF49503; SSF49503; 1. DR PROSITE; PS51465; KAZAL_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13146.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Protease {ECO:0000313|EMBL:ABX13146.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 39 78 Kazal-like. FT {ECO:0000259|PROSITE:PS51465}. SQ SEQUENCE 239 AA; 25730 MW; E2643DB7D40E499B CRC64; MNFSYGIIAA VGILVAISVG LISMSPDEII EPRTVEEQPI ACTMQWDPMC GVDGETYGNS CMLDAANVKL DYVGECVIAE PEPEPIPEPE PEPEPIPEPE PEPEPIPEPE PEPEPIPEPE PEPEPIPEPE PEPETQSDLP MSLTISAPEG SGVPGCEETN ECYLPYEATV AVGTTVTWSN DDTAAHTVTS GNVSAGPTGV FDSGLFMSGG TFEFTFEETG TYDYFCMVHP WMTGIIHVE // ID A9A4D7_NITMS Unreviewed; 432 AA. AC A9A4D7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12626.1}; GN OrderedLocusNames=Nmar_0730 {ECO:0000313|EMBL:ABX12626.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12626.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12626.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12626.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12626.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0730; -. DR EnsemblBacteria; ABX12626; ABX12626; Nmar_0730. DR KEGG; nmr:Nmar_0730; -. DR eggNOG; arCOG08798; Archaea. DR eggNOG; ENOG410XZUZ; LUCA. DR HOGENOM; HOG000110097; -. DR OMA; DDGMMMD; -. DR BioCyc; NMAR436308:GI3J-756-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 432 AA; 46745 MW; 5CAB8A09FCEC1D44 CRC64; MNKSLRYIAL LAILPLLTTG LGTDYFSDAD AKKSKGTATS QYGSSTGICG LDLCSNYPGG RAGWEADQDS ATTPVAPVEK EKMDVMEKTH EEKHMEETMM EESEDLTEAD LGSVLRLSRA NVPATIPMHQ GFYDGGDVYY IITDSSDPTH ADLITENQGW KVELAPLLKN APDTALSKTY MFTNGIEGDG VHGFQGEVFT STPAQPDVYS ALTSHVHVTW NENKTPRVLT SDAMVMEAAD NGEITLTSVD VVLNMPQIVW PDGQMMVKED KTLTDETPYG GGQVLDIDTE EMNVTFIAHR GWGPDGRTIY YIVTDATPSG PAGMMGVVSS PTSASLIANS AAVDLFQFKN GLTSTGPLGF QPGIAAGAPG DENYSPMWRI FMTSWANPEN AQLLETIDDL NAYREAGLID IGIARPMDSD HIVNCPFIDP FQ // ID A9A1P4_NITMS Unreviewed; 353 AA. AC A9A1P4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Multicopper oxidase type 3 {ECO:0000313|EMBL:ABX13559.1}; GN OrderedLocusNames=Nmar_1663 {ECO:0000313|EMBL:ABX13559.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13559.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13559.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13559.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13559.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1P4; -. DR STRING; 436308.Nmar_1663; -. DR EnsemblBacteria; ABX13559; ABX13559; Nmar_1663. DR KEGG; nmr:Nmar_1663; -. DR eggNOG; arCOG03914; Archaea. DR eggNOG; COG2132; LUCA. DR HOGENOM; HOG000096103; -. DR OMA; ERHILEF; -. DR BioCyc; NMAR436308:GI3J-1708-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0050421; F:nitrite reductase (NO-forming) activity; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 2. DR InterPro; IPR011706; Cu-oxidase_2. DR InterPro; IPR011707; Cu-oxidase_3. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR001287; NO2-reductase_Cu. DR Pfam; PF07731; Cu-oxidase_2; 1. DR Pfam; PF07732; Cu-oxidase_3; 1. DR PRINTS; PR00695; CUNO2RDTASE. DR SUPFAM; SSF49503; SSF49503; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 110 209 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07732}. FT DOMAIN 230 341 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07731}. SQ SEQUENCE 353 AA; 40198 MW; 0D898F59F48BC875 CRC64; MVMRSRSGLM LVFIVAVVAI SSVFLVFPEG IDAQKEEKAF VTHTGSVVKT SGEVLDPVYQ VSEVEFDPEK YLREFNYGRV SQLENGQTVR EFTIIADDDR VQEISPGVFY NVWTFNGTVP GPTIRATEGD LLRINFINNG DKPHTMHFHG EHPAEMDGVF EIVGANGGQF TYEFEAGPVG VHPYHCHVMP LEEHIAHGLY GVFIVDPKEG RPPADEMVMV LNGFDTDFDT ENNFYAANSI PFYYQHHPIQ IKKDELIRVY VVNMVEFDPI NNLHLHGNLY QYYPTGTDIV PSEFTDMITL SQTERGIMEF KYQYPGKYLF HAHKVEFSEK GWVGVFLVKD DEQKNTEEVD YGT // ID A9A4E9_NITMS Unreviewed; 365 AA. AC A9A4E9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX12638.1}; GN OrderedLocusNames=Nmar_0742 {ECO:0000313|EMBL:ABX12638.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12638.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12638.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12638.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|PIRSR:PIRSR004762-1}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|PIRSR:PIRSR004762-1}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12638.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4E9; -. DR STRING; 436308.Nmar_0742; -. DR EnsemblBacteria; ABX12638; ABX12638; Nmar_0742. DR KEGG; nmr:Nmar_0742; -. DR eggNOG; arCOG00656; Archaea. DR eggNOG; COG1060; LUCA. DR HOGENOM; HOG000224280; -. DR KO; K18285; -. DR OMA; VYFIENM; -. DR BioCyc; NMAR436308:GI3J-768-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:InterPro. DR GO; GO:0051188; P:cofactor biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR020050; FO_synthase_su2. DR InterPro; IPR005244; FO_synthase_su2-like. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF004762; CHP00423; 1. DR TIGRFAMs; TIGR00423; TIGR00423; 1. PE 4: Predicted; KW 4Fe-4S {ECO:0000256|PIRSR:PIRSR004762-1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|PIRSR:PIRSR004762-1}; KW Iron-sulfur {ECO:0000256|PIRSR:PIRSR004762-1}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR004762-1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|PIRSR:PIRSR004762-1}. FT DOMAIN 63 232 Radical_SAM. {ECO:0000259|Pfam:PF04055}. FT METAL 68 68 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 72 72 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 75 75 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004762-1}. SQ SEQUENCE 365 AA; 40769 MW; 11D1414F06352E16 CRC64; MLEQLVGDSK ALDRAIAGED LSYNDGMDLM NYDNLHLLGA VADARRKELV GDTVTFAASY YMNYTNVCAA SCQMCAFYRK DGAEDAYTLT PQEIEQRVGI AKQMGATEVH IVGGFHPKLP LEYYEDMMRI IKKHHPQLNI KALTAAEIFY LSKLTKNSTK EILSRLKDAG LDSMPGGGAE LFHPEIRKQI VRGKCTGQEW LDVIEEAHTM GIQSNVTMLY GHIEKPEHIV DHLIKIRDLQ KKTNGFITLI PLKFSLDNTE LEQEHLVNNE CSSVYDLRVI ALSRLMLANY LNNISVYWVA YGKKLAQVAL SNGGSDLVGT AFSEEIYRAA GKATNSSVDE LATMVKEIGR VPAQRNTHFG ILKNF // ID A9A139_NITMS Unreviewed; 429 AA. AC A9A139; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit D {ECO:0000256|RuleBase:RU004457}; DE EC=6.3.5.- {ECO:0000256|RuleBase:RU004457}; GN OrderedLocusNames=Nmar_0100 {ECO:0000313|EMBL:ABX12000.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12000.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12000.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12000.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) CC through the transamidation of misacylated Glu-tRNA(Gln) in CC organisms which lack glutaminyl-tRNA synthetase. The reaction CC takes place in the presence of glutamine and ATP through an CC activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is CC specific for glutamate and does not act on aspartate. CC {ECO:0000256|RuleBase:RU004457}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP CC + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. CC {ECO:0000256|RuleBase:RU004457}. CC -!- SUBUNIT: Heterodimer of GatD and GatE. CC {ECO:0000256|RuleBase:RU004457}. CC -!- SIMILARITY: Belongs to the asparaginase 1 family. GatD subfamily. CC {ECO:0000256|RuleBase:RU004457}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12000.1; -; Genomic_DNA. DR ProteinModelPortal; A9A139; -. DR STRING; 436308.Nmar_0100; -. DR EnsemblBacteria; ABX12000; ABX12000; Nmar_0100. DR KEGG; nmr:Nmar_0100; -. DR eggNOG; arCOG01924; Archaea. DR eggNOG; COG0252; LUCA. DR HOGENOM; HOG000227975; -. DR KO; K09482; -. DR OMA; MHGETGD; -. DR BioCyc; NMAR436308:GI3J-103-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004067; F:asparaginase activity; IEA:InterPro. DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR GO; GO:0006450; P:regulation of translational fidelity; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1170; -; 1. DR Gene3D; 3.40.50.40; -; 1. DR InterPro; IPR006033; AsnASEI. DR InterPro; IPR006034; Asparaginase/glutaminase. DR InterPro; IPR020827; Asparaginase/glutaminase_AS1. DR InterPro; IPR027475; Asparaginase/glutaminase_AS2. DR InterPro; IPR011878; GatD. DR InterPro; IPR027473; L-asparaginase_C. DR InterPro; IPR027474; L-asparaginase_N. DR Pfam; PF00710; Asparaginase; 1. DR PIRSF; PIRSF500175; Glu_ADT_D; 1. DR PIRSF; PIRSF001220; L-ASNase_gatD; 1. DR PRINTS; PR00139; ASNGLNASE. DR SMART; SM00870; Asparaginase; 1. DR SUPFAM; SSF53774; SSF53774; 1. DR TIGRFAMs; TIGR00519; asnASE_I; 1. DR TIGRFAMs; TIGR02153; gatD_arch; 1. DR PROSITE; PS00144; ASN_GLN_ASE_1; 1. DR PROSITE; PS00917; ASN_GLN_ASE_2; 1. DR PROSITE; PS51732; ASN_GLN_ASE_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|RuleBase:RU004457}; KW Protein biosynthesis {ECO:0000256|RuleBase:RU004457}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12000.1}. FT DOMAIN 94 284 Asparaginase. {ECO:0000259|Pfam:PF00710}. SQ SEQUENCE 429 AA; 47384 MW; CEEAFFFBBC6F8B22 CRC64; MSEYRGYEGN SLEFLKSNQV VVGDSVKILS DITYSGIIMP RYEHSDDKHI VLKLKSGYNV GLEIAKIESI EKIQSSEKNI DELEKISKID GLPKVLLLST GGTIASKVDY RTGAVTPVLT AEELNSSVPE LSKIANIDAE VLLSEYSENI MPENWLEIAN KISSYSNSDY SGIIIAHGTD TMHYTSSFLS FALAGFPVPI VLVGSQRSSD RASSDAALNL IGATKFITES KTKGVYIVMH NDENDNTVAC HIGTRVRKNH TSKRGAFQTV GDDPAFIIAE EKIQKNISKE FYKVQKFQPK INLDTKIALV KYYPGYDPKL VEQIIDNGYK GIIFEGTGLG HIGRVMYDSV KKASEKGIFL GMTSQCIDGR VRMTVYESGR DLLNLGIIPL ENMLPEVALV KAMWALGNTQ NIEEVKEIML DNIASEMSI // ID A9A595_NITMS Unreviewed; 160 AA. AC A9A595; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 56. DE RecName: Full=50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00570233}; GN Name=rpl18 {ECO:0000256|HAMAP-Rule:MF_01337}; GN OrderedLocusNames=Nmar_0398 {ECO:0000313|EMBL:ABX12294.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12294.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12294.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12294.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: This is one of the proteins that binds and probably CC mediates the attachment of the 5S RNA into the large ribosomal CC subunit, where it forms part of the central protuberance. CC {ECO:0000256|HAMAP-Rule:MF_01337}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Contacts the 5S and CC 23S rRNAs. {ECO:0000256|HAMAP-Rule:MF_01337}. CC -!- SIMILARITY: Belongs to the ribosomal protein L18P family. CC {ECO:0000256|HAMAP-Rule:MF_01337}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12294.1; -; Genomic_DNA. DR ProteinModelPortal; A9A595; -. DR STRING; 436308.Nmar_0398; -. DR EnsemblBacteria; ABX12294; ABX12294; Nmar_0398. DR KEGG; nmr:Nmar_0398; -. DR eggNOG; arCOG04088; Archaea. DR eggNOG; COG0256; LUCA. DR HOGENOM; HOG000105947; -. DR KO; K02881; -. DR OMA; GNKVFAV; -. DR BioCyc; NMAR436308:GI3J-415-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0008097; F:5S rRNA binding; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01337_A; Ribosomal_L18_A; 1. DR InterPro; IPR005485; Rbsml_L5_euk/L18_arc. DR PANTHER; PTHR23410; PTHR23410; 1. DR Pfam; PF17144; Ribosomal_L5e; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01337, KW ECO:0000313|EMBL:ABX12294.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01337, KW ECO:0000313|EMBL:ABX12294.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01337}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01337}. SQ SEQUENCE 160 AA; 17856 MW; 119A1780FAB65994 CRC64; MAYSKILRRL REEKTNYRKR STMLMGKRDF ITVNITNENT QVQILKPGMT GDKVVASAHS RYLLEKGWKG SRKSVPAAYL TGYLAGKKAL GQGAKDAILY TGTKRYTQRM AAALKGVIDA GLEVPANEET FPSEERINGE HLTVKNEVSK MKSTIDTEVK // ID A9A502_NITMS Unreviewed; 713 AA. AC A9A502; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 62. DE SubName: Full=AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:ABX11911.1}; DE EC=3.6.4.6 {ECO:0000313|EMBL:ABX11911.1}; GN OrderedLocusNames=Nmar_0011 {ECO:0000313|EMBL:ABX11911.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11911.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11911.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11911.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11911.1; -; Genomic_DNA. DR ProteinModelPortal; A9A502; -. DR STRING; 436308.Nmar_0011; -. DR EnsemblBacteria; ABX11911; ABX11911; Nmar_0011. DR KEGG; nmr:Nmar_0011; -. DR eggNOG; arCOG01308; Archaea. DR eggNOG; COG0464; LUCA. DR HOGENOM; HOG000223224; -. DR KO; K13525; -. DR OMA; TIPLNIM; -. DR BioCyc; NMAR436308:GI3J-11-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.330.10; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR005938; AAA_ATPase_CDC48. DR InterPro; IPR009010; Asp_de-COase-like_dom. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR003960; ATPase_AAA_CS. DR InterPro; IPR004201; Cdc48_dom2. DR InterPro; IPR029067; CDC48_domain_2-like. DR InterPro; IPR003338; CDC4_N-term_subdom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00004; AAA; 2. DR Pfam; PF02933; CDC48_2; 1. DR Pfam; PF02359; CDC48_N; 1. DR SMART; SM00382; AAA; 2. DR SMART; SM01072; CDC48_2; 1. DR SMART; SM01073; CDC48_N; 1. DR SUPFAM; SSF50692; SSF50692; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR SUPFAM; SSF54585; SSF54585; 1. DR TIGRFAMs; TIGR01243; CDC48; 1. DR PROSITE; PS00674; AAA; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX11911.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 89 CDC48_N. {ECO:0000259|SMART:SM01073}. FT DOMAIN 102 167 CDC48_2. {ECO:0000259|SMART:SM01072}. FT DOMAIN 210 346 AAA. {ECO:0000259|SMART:SM00382}. FT DOMAIN 483 621 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 713 AA; 78837 MW; 8E50144263A1A0C7 CRC64; MSEIILKVDE IPQQHVGRGR AIIDPKIIED NKWNTGQILE LTYNKKTHVK LWPGNPEEYG TGIIKIDGMA RQNIGAGIGD KISLKSVEAA NAEQIVLSPT EKISAEGLQE YMTYNYLNHV FTTGDTLSLN TQMGGRVQFI VTSTKPSKPV IVTENTIFKL GTMTKSVDAS VPRITYDELG GLKNEVQKIR EMVELPMRHP ELFDKIGVEA PKGVLLYGPP GTGKTLLAKA VAGETNAHFI SLSGPEIMGK YYGESEEKIR EIFNQAEENS PSIIFIDEID SIAPKRDEVS GEVEKRIVSQ LLTLMDGMKS RGKVVVIAAT NRPDSIDPAL RRPGRFDREI EIGIPDDEGR FEILSIHTRG MPIDEKVDLK QISKTTHGFV GADLEVLSKE AAMRSLRRIL PEIDLDEDKI SAEILQKIEI TSEDFRDALK EVRPSALREV QVQIPNVSWD DVGGLDELKE ELREAVEWPI KHKEAFDYVD VETPKGILLH GPPGTGKTLI AKALAKMTES NFISIKGPEL LSKWVGESEK GVREIFRKAR QAAPCIIFLD EVDALVPRRG SGGSESHVTE SVVSQILTEI DGLEELHNVL IVGATNRLDI VDDALLRPGR FDRIIEVPNP DAKGRRNIFE IHTKKKPLAS DVDIAKLVEL TDGFSGAEIA AVANRAAIAA LKKYVSGKAQ NVKDIKISQQ ELVDAIDKVK PRKKEIPLAQ SIK // ID A9A4B7_NITMS Unreviewed; 77 AA. AC A9A4B7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Regulatory protein AsnC/Lrp family {ECO:0000313|EMBL:ABX12606.1}; GN OrderedLocusNames=Nmar_0710 {ECO:0000313|EMBL:ABX12606.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12606.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12606.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12606.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12606.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4B7; -. DR STRING; 436308.Nmar_0710; -. DR EnsemblBacteria; ABX12606; ABX12606; Nmar_0710. DR KEGG; nmr:Nmar_0710; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000225449; -. DR OMA; FETIGTH; -. DR BioCyc; NMAR436308:GI3J-736-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 73 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 77 AA; 8911 MW; 33DE078392ADF43E CRC64; MTDAYVMLNC ELGAETEIIE KLKELEQVVD VFETIGTHDM LVKLQAENFE KIREIVSWNI QKLDKVRSTA TLIKKDN // ID A9A349_NITMS Unreviewed; 165 AA. AC A9A349; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 61. DE SubName: Full=4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABX12177.1}; GN OrderedLocusNames=Nmar_0281 {ECO:0000313|EMBL:ABX12177.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12177.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12177.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12177.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12177.1; -; Genomic_DNA. DR ProteinModelPortal; A9A349; -. DR STRING; 436308.Nmar_0281; -. DR EnsemblBacteria; ABX12177; ABX12177; Nmar_0281. DR KEGG; nmr:Nmar_0281; -. DR eggNOG; arCOG01543; Archaea. DR eggNOG; COG1143; LUCA. DR HOGENOM; HOG000109707; -. DR KO; K00338; -. DR OMA; TARTRNS; -. DR BioCyc; NMAR436308:GI3J-291-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR Pfam; PF00037; Fer4; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 2. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW 4Fe-4S {ECO:0000256|RuleBase:RU003429}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|RuleBase:RU003429}; KW Iron-sulfur {ECO:0000256|RuleBase:RU003429}; KW Metal-binding {ECO:0000256|RuleBase:RU003429}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 54 85 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 96 125 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 165 AA; 18150 MW; C7419F30F616D863 CRC64; MGTATGIIRA LNSGIKHIAI KRFTLRYPEE KLKFVGDGYQ FDPSTGVGIA GLKGRHMLFH DHCTGCQLCS IACEGVAEAI AMVKVPEEQK QNKKSIMPQI DYGKCVFCGL CVDACPFYAL YMTNDYELSS FTKEGLIYTP AQLAVKPYLT QDSEIQITDR GATHG // ID A9A429_NITMS Unreviewed; 412 AA. AC A9A429; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 63. DE RecName: Full=Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; DE EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318}; DE AltName: Full=2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; DE AltName: Full=2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; GN Name=eno {ECO:0000256|HAMAP-Rule:MF_00318}; GN OrderedLocusNames=Nmar_0317 {ECO:0000313|EMBL:ABX12213.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12213.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12213.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12213.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the reversible conversion of 2- CC phosphoglycerate into phosphoenolpyruvate. It is essential for the CC degradation of carbohydrates via glycolysis. {ECO:0000256|HAMAP- CC Rule:MF_00318}. CC -!- CATALYTIC ACTIVITY: 2-phospho-D-glycerate = phosphoenolpyruvate + CC H(2)O. {ECO:0000256|HAMAP-Rule:MF_00318}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00318}; CC -!- ENZYME REGULATION: The covalent binding to the substrate causes CC inactivation of the enzyme, and possibly serves as a signal for CC the export of the protein. {ECO:0000256|HAMAP-Rule:MF_00318}. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D- CC glyceraldehyde 3-phosphate: step 4/5. {ECO:0000256|HAMAP- CC Rule:MF_00318}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00318}. CC Secreted {ECO:0000256|HAMAP-Rule:MF_00318}. Cell surface CC {ECO:0000256|HAMAP-Rule:MF_00318}. Note=Fractions of enolase are CC present in both the cytoplasm and on the cell surface. The export CC of enolase possibly depends on the covalent binding to the CC substrate; once secreted, it remains attached to the cell surface. CC {ECO:0000256|HAMAP-Rule:MF_00318}. CC -!- SIMILARITY: Belongs to the enolase family. {ECO:0000256|HAMAP- CC Rule:MF_00318}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12213.1; -; Genomic_DNA. DR ProteinModelPortal; A9A429; -. DR STRING; 436308.Nmar_0317; -. DR EnsemblBacteria; ABX12213; ABX12213; Nmar_0317. DR KEGG; nmr:Nmar_0317; -. DR eggNOG; arCOG01169; Archaea. DR eggNOG; COG0148; LUCA. DR HOGENOM; HOG000072173; -. DR KO; K01689; -. DR OMA; DQPNIDA; -. DR BioCyc; NMAR436308:GI3J-331-MONOMER; -. DR UniPathway; UPA00109; UER00187. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009986; C:cell surface; IEA:UniProtKB-SubCell. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0000015; C:phosphopyruvate hydratase complex; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004634; F:phosphopyruvate hydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.120; -; 1. DR Gene3D; 3.30.390.10; -; 1. DR HAMAP; MF_00318; Enolase; 1. DR InterPro; IPR000941; Enolase. DR InterPro; IPR020810; Enolase_C. DR InterPro; IPR029065; Enolase_C-like. DR InterPro; IPR020811; Enolase_N. DR InterPro; IPR029017; Enolase_N-like. DR PANTHER; PTHR11902; PTHR11902; 1. DR Pfam; PF00113; Enolase_C; 1. DR Pfam; PF03952; Enolase_N; 1. DR PIRSF; PIRSF001400; Enolase; 1. DR PRINTS; PR00148; ENOLASE. DR SMART; SM01192; Enolase_C; 1. DR SMART; SM01193; Enolase_N; 1. DR SUPFAM; SSF51604; SSF51604; 1. DR SUPFAM; SSF54826; SSF54826; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00318}; KW Glycolysis {ECO:0000256|HAMAP-Rule:MF_00318}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:ABX12213.1}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00318}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00318}; KW Pyruvate {ECO:0000313|EMBL:ABX12213.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Secreted {ECO:0000256|HAMAP-Rule:MF_00318}. FT REGION 358 361 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-2}. FT ACT_SITE 199 199 Proton donor. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-1}. FT ACT_SITE 331 331 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-1}. FT METAL 235 235 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00318}. FT METAL 280 280 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00318}. FT METAL 306 306 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00318}. FT BINDING 146 146 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-2}. FT BINDING 156 156 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-2}. FT BINDING 280 280 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-2}. FT BINDING 306 306 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-2}. FT BINDING 331 331 Substrate (covalent); in inhibited form. FT {ECO:0000256|HAMAP-Rule:MF_00318}. FT BINDING 382 382 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00318, FT ECO:0000256|PIRSR:PIRSR001400-2}. SQ SEQUENCE 412 AA; 44546 MW; 2AE0A9DAF9839C30 CRC64; MAKITSIEGR ILYNSRGSKT IEVDVESEGK FVGRVCAPSG ASVGKYEAVS FRNGRPEDSL QVLKENSQKF IGLESSDLKG IHDTLKSFDN SSNYSEIGGA LAFAVTIASM ESASKALDQP LFKTLSNESS FKFPFPLGNI LGGGAHAGPG TPDIQEILIC ATGAKTIEES IETNLAVHKE LRSVLEKEDP NFTNGRGDEG GWAPKLENQK ALEVSAMACE NLGFTLGKEV SLGVDFASST QWNEEKSKYV YDRAGFENTT SEQIDFAADI IEKFKLIYAE DAVHEEAFED MSELTAKFPN TLITGDDLTV TNKGILSKAI DKKSCNAAIL KVNQAGSLYD ALEFANLANE NNIRLITSHR SGESTDSQIS HIGLATKSKM LKVGVVGGER VAKLNELLRL SEHDLIRGMA EV // ID A9A4P6_NITMS Unreviewed; 296 AA. AC A9A4P6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=Periplasmic solute binding protein {ECO:0000313|EMBL:ABX13024.1}; GN OrderedLocusNames=Nmar_1128 {ECO:0000313|EMBL:ABX13024.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13024.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13024.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13024.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13024.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4P6; -. DR STRING; 436308.Nmar_1128; -. DR EnsemblBacteria; ABX13024; ABX13024; Nmar_1128. DR KEGG; nmr:Nmar_1128; -. DR eggNOG; arCOG01005; Archaea. DR eggNOG; COG0803; LUCA. DR HOGENOM; HOG000180308; -. DR KO; K09815; -. DR OMA; IYHPALS; -. DR BioCyc; NMAR436308:GI3J-1160-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR GO; GO:0030001; P:metal ion transport; IEA:InterPro. DR InterPro; IPR006129; AdhesinB. DR InterPro; IPR006128; Lipoprotein_4. DR InterPro; IPR006127; ZnuA-like. DR Pfam; PF01297; ZnuA; 1. DR PRINTS; PR00691; ADHESINB. DR PRINTS; PR00690; ADHESNFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 296 AA; 33575 MW; 6F790704515CD0EA CRC64; MSFALWNVDS PAELPDSDLE IQKINVLASF YPIEEFTKKV GKDKVNVSLL VNPGAEPHDW EPQVKDLQRI QETDLIIING LGFETWIDDV AEINSDVNVI DTSNGIDPIY IESDYRLQIS AKSKELTTDP HIWLNPITIK TQVQNIADAL IEFDPQNKIY YQNNADAYKL ELDSMDKKIR NELAQCSKKD FFAFHDAFSY FAQEYGLNQH TVLKSIDPLS EPSPQDIQEV IDLARILNAN VIFTEEGVNP KMSQVIADEI GSKVLMLSPL EFGDEDGTFM ERMDNNLINL KDALCN // ID A9A5Q1_NITMS Unreviewed; 279 AA. AC A9A5Q1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 38. DE SubName: Full=Gp37Gp68 family protein {ECO:0000313|EMBL:ABX13056.1}; GN OrderedLocusNames=Nmar_1160 {ECO:0000313|EMBL:ABX13056.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13056.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13056.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13056.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13056.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1160; -. DR EnsemblBacteria; ABX13056; ABX13056; Nmar_1160. DR KEGG; nmr:Nmar_1160; -. DR eggNOG; COG4422; LUCA. DR HOGENOM; HOG000151992; -. DR OMA; IEWTEMT; -. DR BioCyc; NMAR436308:GI3J-1192-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR011101; DUF5131. DR Pfam; PF07505; DUF5131; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 279 AA; 32625 MW; AB846A861DA239FC CRC64; MSLAIGSGIE WTEATWNPTS GCSKISPGCK NCYAETLTKR LKAMGQQKYK KGFQYVEHPS DVNLPLTWKK PKKIFVNSMS DLFHENSTFE FTGKCFATMI QADRHDYQIL TKRPKRMAEF SKIFFEYFGH KIPNFMWMGT SIENKQYVSR IKDLRKVKCH TRFISFEPLI GSVGKVNLKG IDWAIIGGES GHHFRKVKKE WIEEIIDQCK EQEVPVFFKQ WGGFRPKSGG RTINRRKYSE YPEIEKRNSL KNVNFDEIAF AEMCMKHEAM KREQMLVKN // ID A9A2C0_NITMS Unreviewed; 339 AA. AC A9A2C0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=Asparagine synthase {ECO:0000313|EMBL:ABX12831.1}; GN OrderedLocusNames=Nmar_0935 {ECO:0000313|EMBL:ABX12831.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12831.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12831.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12831.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12831.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2C0; -. DR STRING; 436308.Nmar_0935; -. DR EnsemblBacteria; ABX12831; ABX12831; Nmar_0935. DR KEGG; nmr:Nmar_0935; -. DR eggNOG; arCOG00071; Archaea. DR eggNOG; COG0367; LUCA. DR HOGENOM; HOG000105771; -. DR KO; K01953; -. DR OMA; SIEERHY; -. DR BioCyc; NMAR436308:GI3J-963-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004066; F:asparagine synthase (glutamine-hydrolyzing) activity; IEA:InterPro. DR GO; GO:0006529; P:asparagine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR001962; Asn_synthase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00733; Asn_synthase; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 33 167 Asparagine synthetase. FT {ECO:0000259|Pfam:PF00733}. FT DOMAIN 193 310 Asparagine synthetase. FT {ECO:0000259|Pfam:PF00733}. SQ SEQUENCE 339 AA; 38991 MW; 402464D1C9886295 CRC64; MQKLVWPNDI NVRHIYFNFK RFYFALDNTS KDLYEALQES CNSCKSNLIS LSGGLDSSII AYFLKERKPN TLAIIAEDFV STDLTYCQLV SKEMDLPLTI FNVKTAEILE AVEQTIKILK NFNDIEIRNN VVMYLAIKWA KDNGEKSIIT GDGADELFAG YNFLVHKSEE ELESEINRVC SIMHFPTQGI GKALGIKIES PFLSDKVISL AKKIPANLKV KEENKKRHGK WILRKTFEPY IPEQITWREK SPMQEGSGTS GLTNLFESII EEEKYVEKKL TVEKEDNVVI RSRESMHYYE IFKKLYGSPV DKEAKSVCPY CKHKVENSKF CRMCGAFPI // ID A9A1Q5_NITMS Unreviewed; 393 AA. AC A9A1Q5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 38. DE SubName: Full=Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ABX12026.1}; GN OrderedLocusNames=Nmar_0126 {ECO:0000313|EMBL:ABX12026.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12026.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12026.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12026.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12026.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Q5; -. DR STRING; 436308.Nmar_0126; -. DR EnsemblBacteria; ABX12026; ABX12026; Nmar_0126. DR KEGG; nmr:Nmar_0126; -. DR eggNOG; ENOG4110G62; LUCA. DR BioCyc; NMAR436308:GI3J-129-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1110; -; 2. DR InterPro; IPR013830; SGNH_hydro. DR Pfam; PF13472; Lipase_GDSL_2; 1. DR SUPFAM; SSF52266; SSF52266; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 35 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 393 AA; 45171 MW; 9CE4E0C8C2DDF37E CRC64; MSVQVSSGKQ FIFFLILGII LLIGIEVSLH ITYLFSMECD SLNSSFFDYF SEYDKQVLCR EYTLANDVSM FDAPVRLHVP DQHGKYVNIN SDGWRGEEIK FLDDEYRIFF FGGSTAFGNI STSDETTIPG YLEKKLRDEG YNVKVINVGV SGAATIDEFY VLENLILRFD PDMVIMYDGW NDVAGFNLTK FNIPYQEFIL NDALLNNMSF DRFNSSSGSG SGLIKFFERI NFKTGIGLFI FYKNIVNEQP TLENIDNSKL DVKKGKVDPK IVEFIQNYMK KYWSKTCELG QTNDFTVVNF IQPILGTSDR VIGDDEKRIM NDTSFINEYS TYLREINLNT GEVKYCDNIF DLRNSFSEMN GINIYLDEGH MSDFGNEIMA DSIYNKIFPM IPH // ID A9A4V1_NITMS Unreviewed; 473 AA. AC A9A4V1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=Phosphoesterase DHHA1 {ECO:0000313|EMBL:ABX13405.1}; GN OrderedLocusNames=Nmar_1509 {ECO:0000313|EMBL:ABX13405.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13405.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13405.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13405.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13405.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4V1; -. DR STRING; 436308.Nmar_1509; -. DR EnsemblBacteria; ABX13405; ABX13405; Nmar_1509. DR KEGG; nmr:Nmar_1509; -. DR eggNOG; arCOG00427; Archaea. DR eggNOG; COG0608; LUCA. DR HOGENOM; HOG000105221; -. DR KO; K07463; -. DR OMA; TARYGHA; -. DR BioCyc; NMAR436308:GI3J-1551-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR InterPro; IPR003156; DHHA1_dom. DR Pfam; PF02272; DHHA1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 393 459 DHHA1. {ECO:0000259|Pfam:PF02272}. SQ SEQUENCE 473 AA; 52207 MW; 34E92C1CEE6DA619 CRC64; MTKSLDESLS FFKDKVTDCI RSKKSIFVTT HIDCDGLTSG SIITKALIRA GANCTVRTSK EFSKNVVDSF KTDSRDFHIV TDLGGGFGKD LNETLGDNWI VLDHHQIPDE EIENPNVINA WKYGIDGGLE ICAGGMAYLA SMALDEKNSD LSSIAVVSAL GDRQDQGERK SFTGKNFEIA NTAKEQGLVE IDLDLLLVGR ETRPLPDALA FTSQPFIEGL TWNRDACLSL LNSSGIQLKD EGRWRVPAEL DEEEKRQVIE SITKFTAGKN ATEIMSELIG YTYTFPREDK RSFLRDGREF STMLNSCGRI NRSGVGMAIC MGDRNKILRE GETILTDYRK MIREYMNILS NERWRISESE TCVMVNGEDI VPETMTGTIS SLIAGSPKNS GKIVILRTKG EENTIKFSSR KSFGCKSDIN LSDLMRAGAE KFDGIGGGHD AAAGAKITKD KLDEFLNYLE VNVVNVSSAD SPQ // ID A9A5B0_NITMS Unreviewed; 636 AA. AC A9A5B0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 55. DE SubName: Full=Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein {ECO:0000313|EMBL:ABX12309.1}; GN OrderedLocusNames=Nmar_0413 {ECO:0000313|EMBL:ABX12309.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12309.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12309.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12309.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12309.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5B0; -. DR STRING; 436308.Nmar_0413; -. DR EnsemblBacteria; ABX12309; ABX12309; Nmar_0413. DR KEGG; nmr:Nmar_0413; -. DR eggNOG; arCOG01606; Archaea. DR eggNOG; ENOG4102UA5; Archaea. DR eggNOG; COG0674; LUCA. DR eggNOG; COG1014; LUCA. DR HOGENOM; HOG000007071; -. DR KO; K00174; -. DR OMA; TGFPTRT; -. DR BioCyc; NMAR436308:GI3J-431-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016903; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors; IEA:InterPro. DR Gene3D; 3.40.50.920; -; 1. DR Gene3D; 3.40.50.970; -; 1. DR Gene3D; 3.40.920.10; -; 2. DR InterPro; IPR022367; 2-oxoacid/accept_OxRdtase_asu. DR InterPro; IPR033412; PFOR_II. DR InterPro; IPR019752; Pyrv/ketoisovalerate_OxRed_cat. DR InterPro; IPR002880; Pyrv_Fd/Flavodoxin_OxRdtase_N. DR InterPro; IPR002869; Pyrv_flavodox_OxRed_cen. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR009014; Transketo_C/PFOR_II. DR Pfam; PF17147; PFOR_II; 1. DR Pfam; PF01558; POR; 1. DR Pfam; PF01855; POR_N; 1. DR SUPFAM; SSF52518; SSF52518; 1. DR SUPFAM; SSF52922; SSF52922; 1. DR SUPFAM; SSF53323; SSF53323; 1. DR TIGRFAMs; TIGR03710; OAFO_sf; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyruvate {ECO:0000313|EMBL:ABX12309.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 15 218 POR. {ECO:0000259|Pfam:PF01558}. FT DOMAIN 253 494 POR_N. {ECO:0000259|Pfam:PF01855}. SQ SEQUENCE 636 AA; 70334 MW; F8C6D2D2356598CF CRC64; MSSTDFTWLI GGPQGSGVES GANIFSRVCA EMGYQVFGKR EFYSNIKGEH SYFAVRISDE KIHSNVNDVT LMASFDAETI FRHYDEVVSD GGIIYDADLD DVTTDRVHTL DAPFRERLHK KLESKNKPFS IAGVLEIAKE NGVKLYPVSF KSILETLAEE TENPRLKGLV RMFNVIGVSL SLGLVKMPPD SLQKTIGTIF SKKQEIAKIN QQTANYSYNY ATAKFEDFHH TLTGIQKESG TLLVQGFQGT ALGKMACGCR VQPYYPITPA SDESVFLESN EILEIIDDRP GSTAVIQTED EICAMGMTIG SALTGTRSAT CTSGPGFALM TEMLGWAGIN EVPVVITNYQ RSGPSTGLPT RHGQDDLLFS VFAGHGDFPK IVYASGDVEE SFYDTGNVFN YADIFQVPVI HLMDKFIASS VVTCTRFDPS KITINRGKLL DKVEGEYERF AFTEDGVSPR SKLGLDNGIF WDTGDESDEK GHITEDPVLR VKMMDKRMSR LDLILKEIPE AEKAVSFGVE DFTVITWGSS KGPIIDAIEM LKKDGISIGL VQIKLLHPFP GDYVASLLKD AKTIIDVEAN HSAQLGKLFK QNVQRDIDYS ILKYTGRAMT STEVYDSLKK IVENKAEKRE VLMHGA // ID A9A408_NITMS Unreviewed; 488 AA. AC A9A408; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE RecName: Full=Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; DE AltName: Full=Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; DE AltName: Full=Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; GN Name=pepA {ECO:0000256|HAMAP-Rule:MF_00181}; GN OrderedLocusNames=Nmar_0296 {ECO:0000313|EMBL:ABX12192.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12192.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12192.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12192.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Presumably involved in the processing and regular CC turnover of intracellular proteins. Catalyzes the removal of CC unsubstituted N-terminal amino acids from various peptides. CC {ECO:0000256|HAMAP-Rule:MF_00181}. CC -!- CATALYTIC ACTIVITY: Release of an N-terminal amino acid, Xaa-|- CC Yaa-, in which Xaa is preferably Leu, but may be other amino acids CC including Pro although not Arg or Lys, and Yaa may be Pro. Amino CC acid amides and methyl esters are also readily hydrolyzed, but CC rates on arylamides are exceedingly low. {ECO:0000256|HAMAP- CC Rule:MF_00181}. CC -!- CATALYTIC ACTIVITY: Release of an N-terminal amino acid, CC preferentially leucine, but not glutamic or aspartic acids. CC {ECO:0000256|HAMAP-Rule:MF_00181}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00181}; CC Note=Binds 2 manganese ions per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00181}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00181}. CC -!- SIMILARITY: Belongs to the peptidase M17 family. CC {ECO:0000256|HAMAP-Rule:MF_00181}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12192.1; -; Genomic_DNA. DR ProteinModelPortal; A9A408; -. DR STRING; 436308.Nmar_0296; -. DR EnsemblBacteria; ABX12192; ABX12192; Nmar_0296. DR KEGG; nmr:Nmar_0296; -. DR eggNOG; arCOG04322; Archaea. DR eggNOG; COG0260; LUCA. DR HOGENOM; HOG000243132; -. DR KO; K01255; -. DR OMA; NTPPMIG; -. DR BioCyc; NMAR436308:GI3J-309-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008235; F:metalloexopeptidase activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00181; Cytosol_peptidase_M17; 1. DR InterPro; IPR011356; Leucine_aapep/pepB. DR InterPro; IPR000819; Peptidase_M17_C. DR InterPro; IPR023042; Peptidase_M17_leu_NH2_pept. DR InterPro; IPR008283; Peptidase_M17_N. DR Pfam; PF00883; Peptidase_M17; 1. DR Pfam; PF02789; Peptidase_M17_N; 1. DR PRINTS; PR00481; LAMNOPPTDASE. DR PROSITE; PS00631; CYTOSOL_AP; 1. PE 3: Inferred from homology; KW Aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181, KW ECO:0000313|EMBL:ABX12192.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00181}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00181, KW ECO:0000313|EMBL:ABX12192.1}; KW Manganese {ECO:0000256|HAMAP-Rule:MF_00181}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00181}; KW Protease {ECO:0000256|HAMAP-Rule:MF_00181, KW ECO:0000313|EMBL:ABX12192.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 333 340 CYTOSOL_AP. FT {ECO:0000259|PROSITE:PS00631}. FT ACT_SITE 265 265 {ECO:0000256|HAMAP-Rule:MF_00181}. FT ACT_SITE 339 339 {ECO:0000256|HAMAP-Rule:MF_00181}. FT METAL 253 253 Manganese 2. {ECO:0000256|HAMAP- FT Rule:MF_00181}. FT METAL 258 258 Manganese 1. {ECO:0000256|HAMAP- FT Rule:MF_00181}. FT METAL 258 258 Manganese 2. {ECO:0000256|HAMAP- FT Rule:MF_00181}. FT METAL 276 276 Manganese 2. {ECO:0000256|HAMAP- FT Rule:MF_00181}. FT METAL 335 335 Manganese 1. {ECO:0000256|HAMAP- FT Rule:MF_00181}. FT METAL 337 337 Manganese 1. {ECO:0000256|HAMAP- FT Rule:MF_00181}. FT METAL 337 337 Manganese 2. {ECO:0000256|HAMAP- FT Rule:MF_00181}. SQ SEQUENCE 488 AA; 53113 MW; 60B11142E63D2850 CRC64; MKIKVQNTPK KTQLLCAFAL EKSDKVLGLP KLDAKTSFVV NQSLKDIEGK LGKLMVIPST GKKQFQRILI AGIGKKEDIT KDTFRQISGK IAQKARELKL KEFSIIIPPT FVIEQVSSTT QVVEGAKMAL YKFEKFKAEK EENSPDMTII VPKSNKVLKS IKTAEIVAEG AIFTKSIANL PPNECTPSTL ANFAKTISKN KMKCKIISKP ELKKKGFGGI TAVGQGSKNE PKLIIMEHNR GSRNEKPIVL VGKAVTFDTG GISLKPGANM DEMKFDKCGG CTVLGIMKAI SELKLPINVI GIVPSVENMP GGESYRPGDI IKLYNGKTAE ILNTDAEGRL ILADALAYGE KHYAPKAIID FATLTGACII ALGTNVAGMV SNNEKLSKKI FESSKNTTEQ IWELPLNQEF MDMIKSDVAD MKNMGIGRAA GTITAAAFLR NAIEDTPWTH LDIAGVAWTQ TATKEKSYNP KGATGFGVRL ILDYLQKL // ID A9A2N7_NITMS Unreviewed; 178 AA. AC A9A2N7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Putative methylase {ECO:0000313|EMBL:ABX13276.1}; GN OrderedLocusNames=Nmar_1380 {ECO:0000313|EMBL:ABX13276.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13276.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13276.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13276.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13276.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2N7; -. DR STRING; 436308.Nmar_1380; -. DR EnsemblBacteria; ABX13276; ABX13276; Nmar_1380. DR KEGG; nmr:Nmar_1380; -. DR eggNOG; arCOG00109; Archaea. DR eggNOG; COG2890; LUCA. DR HOGENOM; HOG000106450; -. DR KO; K02493; -. DR OMA; ATHYFFE; -. DR BioCyc; NMAR436308:GI3J-1415-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008276; F:protein methyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR004557; PrmC-related. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR007848; Small_mtfrase_dom. DR Pfam; PF05175; MTS; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00537; hemK_rel_arch; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13276.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13276.1}. SQ SEQUENCE 178 AA; 19938 MW; 65E57C6AA877F8BD CRC64; MQNKFSKNDE YPPSEDTFFI AENIENENGE YALDIGSGSG YLTKLLSENF SLVVGTDINC DVLQHQSSYK TQNLICCNGS DALKVKFDFI VCNLPYLATD EILDIATDGG AEGFEIPKKI FDSAKNNLKK NGKFVFVTSS LSNYEKLIDY AQKLGLKTRI MAKKKLFFEE LILVEAIN // ID A9A396_NITMS Unreviewed; 207 AA. AC A9A396; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Methyltransferase type 11 {ECO:0000313|EMBL:ABX12525.1}; GN OrderedLocusNames=Nmar_0629 {ECO:0000313|EMBL:ABX12525.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12525.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12525.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12525.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12525.1; -; Genomic_DNA. DR ProteinModelPortal; A9A396; -. DR EnsemblBacteria; ABX12525; ABX12525; Nmar_0629. DR KEGG; nmr:Nmar_0629; -. DR eggNOG; arCOG01781; Archaea. DR eggNOG; ENOG41122B3; LUCA. DR HOGENOM; HOG000108524; -. DR OMA; SGGTFYC; -. DR BioCyc; NMAR436308:GI3J-654-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12525.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12525.1}. SQ SEQUENCE 207 AA; 24165 MW; 1BBF5D97A4AEE439 CRC64; MDGVRRTFDE WAQNGRAELM EVEHGKNVSK FLNSISFDGP FTFLDVGCGN GWVVRKIAKE NNCKRAIGID KSKKMIIQAK KKIVSKKEGF VHTDIESWKY GGKFDYIFSM EALYYSDSIE EALKKIFKML KPGGQFFCGT DFYTDNKATA RWKDVMKIQM HLHSKKEWKE FFKNAGFQIK TKHIKDLKSR KKWKREFGTL FIIGTKN // ID A9A640_NITMS Unreviewed; 358 AA. AC A9A640; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABX13518.1}; GN OrderedLocusNames=Nmar_1622 {ECO:0000313|EMBL:ABX13518.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13518.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13518.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13518.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13518.1; -; Genomic_DNA. DR ProteinModelPortal; A9A640; -. DR STRING; 436308.Nmar_1622; -. DR EnsemblBacteria; ABX13518; ABX13518; Nmar_1622. DR KEGG; nmr:Nmar_1622; -. DR eggNOG; arCOG01458; Archaea. DR eggNOG; COG0604; LUCA. DR HOGENOM; HOG000294672; -. DR OMA; NEVIVYP; -. DR BioCyc; NMAR436308:GI3J-1666-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.180.10; -; 1. DR InterPro; IPR013149; ADH_C. DR InterPro; IPR013154; ADH_N. DR InterPro; IPR002085; ADH_SF_Zn-type. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020843; PKS_ER. DR PANTHER; PTHR11695; PTHR11695; 1. DR Pfam; PF08240; ADH_N; 1. DR Pfam; PF00107; ADH_zinc_N; 1. DR SMART; SM00829; PKS_ER; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 358 AA; 38903 MW; 841833138748D748 CRC64; MKAVVYNEYA PDDNYAKILK VQDIDEPKPK ADEVIFTNKA SALNYNDIWG MRGVPVAVPL PHVSGSDVAG DVIAVGEDVK NFKVGDRVVS HSNLACRVCS ACTDGREFDC TRRQVWGFQT GPLWGAYSEQ IHLPEVNVSK IPDGVSYEDA AAASMTILTS WHMLVGRAKI TPGQTVLVMG GGSGVGSFAI QIAKLYNCDV IATASPDKLD KCKELGADYA VDHRKDDWSK EVFKISKEIA KTKGEAPGID LAFDHIGQTH FNKQLTLLKY GATLVSCGAT TGYDAQIDLR HIFFKGINVL GSTQGTKAEL DQGLYWMGQG KIKSIVDSVF TFEQAAEAHT KMLKGDFFGK IIMKPEGA // ID A9A1G0_NITMS Unreviewed; 510 AA. AC A9A1G0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13139.1}; GN OrderedLocusNames=Nmar_1243 {ECO:0000313|EMBL:ABX13139.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13139.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13139.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13139.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13139.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G0; -. DR STRING; 436308.Nmar_1243; -. DR EnsemblBacteria; ABX13139; ABX13139; Nmar_1243. DR KEGG; nmr:Nmar_1243; -. DR eggNOG; arCOG00280; Archaea. DR eggNOG; COG0433; LUCA. DR HOGENOM; HOG000223323; -. DR KO; K06915; -. DR OMA; WINRIAK; -. DR BioCyc; NMAR436308:GI3J-1276-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR008571; HerA. DR InterPro; IPR002789; HerA_central. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR30121:SF2; PTHR30121:SF2; 1. DR Pfam; PF01935; DUF87; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 128 329 DUF87. {ECO:0000259|Pfam:PF01935}. SQ SEQUENCE 510 AA; 56900 MW; 1F67FAF70568A8CE CRC64; MSLGFVIGES KPTFVTAITS RALSVGEYIK IGSDEGEILG LVEKSSVTSA AFTDVRNFDE AAESTEIAEL NKRDKTFTAH IGILGFLENL RKGQSIIPAI PPIPGTEITQ PSKQDLEEIF SPKNDGWVKI GNLLRNKTID AKVNLDKIVS RHLGILAMTG MGKSNLVSLV TKQISKLKGT VIIFDYHNDY TTLNIPRINV VDAKINPRLL DADQLSEVLE IRDGANVQQR VLRMAFTKHV KESKEFWSKL ENEIDFIVNS EDKKLKEIRT SAYRVQDIIE EAQKRFEDIL DPDMGDPISF IKEGRTNVLN ISELSEKQAN VAVAFYLQQL LKDRKDASIA RHGKSKRERN YRFNSPIFVI IEEAHVFIPK DHDTSAKYWA AKIAREGRKF GLGLGVVSQR PRSVDLNVLS QMGSFAIMKI IQEDDQRQIA SATESTSREL IAQLTSLNVG DAVLVGQWTN LPSLVHVEEV KEKIMGADQS AVNAWANAEK MKEVAVESTQ GLVQKDLLLD // ID A9A489_NITMS Unreviewed; 542 AA. AC A9A489; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Collagen triple helix repeat {ECO:0000313|EMBL:ABX12578.1}; GN OrderedLocusNames=Nmar_0682 {ECO:0000313|EMBL:ABX12578.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12578.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12578.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12578.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12578.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0682; -. DR EnsemblBacteria; ABX12578; ABX12578; Nmar_0682. DR KEGG; nmr:Nmar_0682; -. DR eggNOG; arCOG03606; Archaea. DR eggNOG; ENOG410XNMM; LUCA. DR HOGENOM; HOG000105981; -. DR OMA; ELETIWI; -. DR BioCyc; NMAR436308:GI3J-707-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005581; C:collagen trimer; IEA:UniProtKB-KW. DR InterPro; IPR008160; Collagen. DR Pfam; PF01391; Collagen; 3. PE 4: Predicted; KW Collagen {ECO:0000313|EMBL:ABX12578.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 542 AA; 53184 MW; CC7D8AC2BEA7A200 CRC64; MSSQSRLEIQ GQAPFKQSGV YEAQIAIVGS RPSDAQIKSK QFTSLWRGNF HLRVKDGVFS ETIGSPENPI PSSVLELETI WIVVTDLFSS LHSVFDVPLS KPKSSPKPPE SKPSETKSNL ETPKQTRSTK STQSTPGVRG SPGEKGAPGL QGPTGDKGPQ GPPGPTGPPG DKGPDGPQGP PGDKGPTGDK GPAGDKGIAG DKGITGDKGI TGDKGDKGDK GIPGPVGDKG DKGATGPIGE KGPTGLKGPI GEKGEKGPTG PPGDKGLSGL KGPPGEKGEK GPTGPPGDKG LTGPVGTPGE KGPTGQAGVQ GEKGIQGGPG PIGEKGPAGP VGDKGPIGPA GPLGDKGLSG PTGVPGDKGP IGPPGPIGEK GPKGTEGPIG EKGPQGPQGP AGAKGLTGVP GPQGEKGEKG PTGPPGEKGL TGPAGPPGEI GTVGPQGSQG ERGPTGPSGE KGPQGPQGIQ GPQGERGPTG PIGSIGEAGP RGEQGPLGPA GPRGPPGPPG EKGPSGGMSS EQKALFKELL EILTEKNIIS TEEQIKLMSY LY // ID A9A3U7_NITMS Unreviewed; 127 AA. AC A9A3U7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABX13359.1}; GN OrderedLocusNames=Nmar_1463 {ECO:0000313|EMBL:ABX13359.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13359.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13359.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13359.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13359.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3U7; -. DR STRING; 436308.Nmar_1463; -. DR EnsemblBacteria; ABX13359; ABX13359; Nmar_1463. DR KEGG; nmr:Nmar_1463; -. DR eggNOG; arCOG04946; Archaea. DR eggNOG; COG3324; LUCA. DR HOGENOM; HOG000232020; -. DR KO; K06996; -. DR OMA; HFEIPAD; -. DR BioCyc; NMAR436308:GI3J-1500-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051213; F:dioxygenase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.180.10; -; 1. DR InterPro; IPR029068; Glyas_Bleomycin-R_OHBP_Dase. DR SUPFAM; SSF54593; SSF54593; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Dioxygenase {ECO:0000313|EMBL:ABX13359.1}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13359.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 127 AA; 14129 MW; A60A848DAD3EC5D7 CRC64; MNKVVHFEIP FDDESRAQKF YQDVFGWQIT KFPEMDYYLA TTTPSDENMK PKEPGAINGG LLKKDPTGEH PVIVIDVPSV DEHISKVESA GGKTIMPKIQ VGDFGLYARV ADTEGNVIGI WQTLKAC // ID A9A5R3_NITMS Unreviewed; 415 AA. AC A9A5R3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Vitamin K-dependent gamma-carboxylase {ECO:0000313|EMBL:ABX13068.1}; GN OrderedLocusNames=Nmar_1172 {ECO:0000313|EMBL:ABX13068.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13068.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13068.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13068.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13068.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1172; -. DR EnsemblBacteria; ABX13068; ABX13068; Nmar_1172. DR KEGG; nmr:Nmar_1172; -. DR eggNOG; ENOG410XR5Q; LUCA. DR HOGENOM; HOG000032358; -. DR OMA; TYLNHYY; -. DR BioCyc; NMAR436308:GI3J-1204-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008488; F:gamma-glutamyl carboxylase activity; IEA:InterPro. DR GO; GO:0017187; P:peptidyl-glutamic acid carboxylation; IEA:InterPro. DR InterPro; IPR011020; HTTM. DR InterPro; IPR007782; VKG_COase. DR PANTHER; PTHR12639; PTHR12639; 1. DR Pfam; PF05090; VKG_Carbox; 1. DR SMART; SM00752; HTTM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 40 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 61 77 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 100 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 121 139 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 177 197 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 204 222 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 228 246 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 267 285 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 415 AA; 49344 MW; F28947D1DD99F259 CRC64; MLWEVFRYFE HDWISKYWID PIFHFTYYGF DWVKPWPGDL MYVHFAAMGV LSVCIMVGFK YRICAILFFL AFSQIFFSEQ SRYLNHFYLI WLVSFILIFI PANRSLSIDS WFNKKIRTDF ISAYSLWLLR ILVGIPYFFG GIAKLNPDWL AGYPLRFWLE SEADTFPLLG QFFTEEWFVM FFAYSALFVD LLAVPFLLWR RSRIFAYAIL VSFHLLNAQL FSIGIFPWFM IFATLIFFVP SWPRVLKRFK VAKKPKSKIT TLTKNQKIVL SLILIFLVVQ ITLPLRHYAY PGNVSWTEEG HNFAWHMKLR DKDTLFMEFT ATDPSTGRSW TVDHDEDLTA RQESKMSTRP DMILQYSHFL AEKYRSQGYE DIEIRVDITS SVNGRDYQKL IYPNVDLAKE PRTLLPKSWI VPLEN // ID A9A1T6_NITMS Unreviewed; 311 AA. AC A9A1T6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABX12057.1}; GN OrderedLocusNames=Nmar_0161 {ECO:0000313|EMBL:ABX12057.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12057.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12057.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12057.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12057.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T6; -. DR STRING; 436308.Nmar_0161; -. DR EnsemblBacteria; ABX12057; ABX12057; Nmar_0161. DR KEGG; nmr:Nmar_0161; -. DR eggNOG; arCOG00984; Archaea. DR eggNOG; COG1454; LUCA. DR HOGENOM; HOG000106698; -. DR KO; K18602; -. DR OMA; YLINTTF; -. DR BioCyc; NMAR436308:GI3J-162-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR001670; ADH_Fe. DR Pfam; PF00465; Fe-ADH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 273 Fe-ADH. {ECO:0000259|Pfam:PF00465}. SQ SEQUENCE 311 AA; 34532 MW; C4FBDCE802490EF4 CRC64; MWTIKQPPKI IFGKNCVSEF IFPTKCLVVT SKGAKSRGWL DYCGLNDQMI FNNVEPNPSI ETTEKIISEF QNSDFTHIVG IGGGSSMDVA KYCGFKMNKQ KLMIPTTFGS GSEVTRISVL KVNGKKKSFH DDGIFSDTAL IDSFFLENST PKIFKNSVID ACAQCTEAYD SKSSNPYTKF FCNQAFELLE EGILTNNNEK IVLGSLFDGL GFGNSSTTLG HALSYVFSNE GISHGHALAF TTSAAHKFNK SKYFERFEKL VSFLGFEPIT LEQSLDHATE TILPDKKHLD NNPIPVSKDD IYNLLKTIIS K // ID A9A3T6_NITMS Unreviewed; 134 AA. AC A9A3T6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13348.1}; GN OrderedLocusNames=Nmar_1452 {ECO:0000313|EMBL:ABX13348.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13348.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13348.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13348.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the PDCD5 family. CC {ECO:0000256|SAAS:SAAS00576770}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13348.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1452; -. DR EnsemblBacteria; ABX13348; ABX13348; Nmar_1452. DR KEGG; nmr:Nmar_1452; -. DR eggNOG; arCOG05529; Archaea. DR eggNOG; ENOG410XTWE; LUCA. DR HOGENOM; HOG000107913; -. DR OMA; NETAMIV; -. DR BioCyc; NMAR436308:GI3J-1489-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR InterPro; IPR002836; PDCD5-related. DR Pfam; PF01984; dsDNA_bind; 1. DR PIRSF; PIRSF015730; TFAR19; 1. DR SUPFAM; SSF46950; SSF46950; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 134 AA; 15256 MW; 6893C082D1C886EB CRC64; MSDDSELERL KAKRLAEMQK NINTRQDSEK TPEQTQEKPP ENPRDILVKV LGFRGLEVLQ NAESQFPNET AMIVQKLSEL IKSGELNETI DGGKLMTLFR AVGLHIRMET KINVEQDGKF VSLTDKLTKQ SKDE // ID A9A579_NITMS Unreviewed; 220 AA. AC A9A579; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 60. DE RecName: Full=50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318, ECO:0000256|SAAS:SAAS00010815}; GN Name=rpl1 {ECO:0000256|HAMAP-Rule:MF_01318}; GN OrderedLocusNames=Nmar_0382 {ECO:0000313|EMBL:ABX12278.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12278.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12278.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12278.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds directly to 23S rRNA. Probably involved in E site CC tRNA release. {ECO:0000256|HAMAP-Rule:MF_01318}. CC -!- FUNCTION: Protein L1 is also a translational repressor protein, it CC controls the translation of its operon by binding to its mRNA. CC {ECO:0000256|HAMAP-Rule:MF_01318}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01318, ECO:0000256|SAAS:SAAS00010803}. CC -!- SIMILARITY: Belongs to the ribosomal protein L1P family. CC {ECO:0000256|HAMAP-Rule:MF_01318, ECO:0000256|RuleBase:RU000659, CC ECO:0000256|SAAS:SAAS00539152}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12278.1; -; Genomic_DNA. DR ProteinModelPortal; A9A579; -. DR STRING; 436308.Nmar_0382; -. DR EnsemblBacteria; ABX12278; ABX12278; Nmar_0382. DR KEGG; nmr:Nmar_0382; -. DR eggNOG; arCOG04289; Archaea. DR eggNOG; COG0081; LUCA. DR HOGENOM; HOG000207016; -. DR KO; K02863; -. DR OMA; DFFIAQA; -. DR BioCyc; NMAR436308:GI3J-398-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW. DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.190.20; -; 2. DR Gene3D; 3.40.50.790; -; 1. DR HAMAP; MF_01318_A; Ribosomal_L1_A; 1. DR InterPro; IPR002143; Ribosomal_L1. DR InterPro; IPR023674; Ribosomal_L1-like. DR InterPro; IPR028364; Ribosomal_L1/biogenesis. DR InterPro; IPR016094; Ribosomal_L1_2-a/b-sand. DR InterPro; IPR016095; Ribosomal_L1_3-a/b-sand. DR InterPro; IPR023669; Ribosomal_L1_arc. DR InterPro; IPR023673; Ribosomal_L1_CS. DR Pfam; PF00687; Ribosomal_L1; 1. DR PIRSF; PIRSF002155; Ribosomal_L1; 1. DR SUPFAM; SSF56808; SSF56808; 1. DR PROSITE; PS01199; RIBOSOMAL_L1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repressor {ECO:0000256|HAMAP-Rule:MF_01318, KW ECO:0000256|SAAS:SAAS00421319}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01318, KW ECO:0000256|RuleBase:RU000659, ECO:0000256|SAAS:SAAS00421315, KW ECO:0000313|EMBL:ABX12278.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01318, KW ECO:0000256|RuleBase:RU000659, ECO:0000256|SAAS:SAAS00421315, KW ECO:0000313|EMBL:ABX12278.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01318, KW ECO:0000256|SAAS:SAAS00421313, ECO:0000256|SAAS:SAAS00421314}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01318, KW ECO:0000256|SAAS:SAAS00421313}; KW Translation regulation {ECO:0000256|HAMAP-Rule:MF_01318, KW ECO:0000256|SAAS:SAAS00421317}; KW tRNA-binding {ECO:0000256|HAMAP-Rule:MF_01318, KW ECO:0000256|SAAS:SAAS00421314}. SQ SEQUENCE 220 AA; 24145 MW; E1F688C29FA7BF31 CRC64; MITEAQLVDI VKEAKAATKA KKFKQSIELI VNFKDIDVKK GFALNEVVQL PKTSSPATVC VIATGDMGTK AKAAKADSVI GNEELDKFGA NKRESRKFIN KYDFFLADTQ IMPTVGKTLG QLLGPRGKMP TPVPFNAPIE SFLSRFRSSI KVRTRASLSV SCKIGDETME DADLAINAHA VLSAIEKKLP NGEKNMKRVM IKTTMGKPIK QLQEVKKKFA // ID A9A4Y5_NITMS Unreviewed; 531 AA. AC A9A4Y5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=Cytochrome b/b6 domain {ECO:0000313|EMBL:ABX13439.1}; GN OrderedLocusNames=Nmar_1543 {ECO:0000313|EMBL:ABX13439.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13439.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13439.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13439.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13439.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Y5; -. DR STRING; 436308.Nmar_1543; -. DR EnsemblBacteria; ABX13439; ABX13439; Nmar_1543. DR KEGG; nmr:Nmar_1543; -. DR eggNOG; arCOG01721; Archaea. DR eggNOG; COG1290; LUCA. DR HOGENOM; HOG000104895; -. DR KO; K00412; -. DR OMA; HIRNIHY; -. DR BioCyc; NMAR436308:GI3J-1586-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0022904; P:respiratory electron transport chain; IEA:InterPro. DR Gene3D; 1.20.810.10; -; 1. DR InterPro; IPR005798; Cyt_b/b6_C. DR InterPro; IPR005797; Cyt_b/b6_N. DR InterPro; IPR027387; Cytb/b6-like. DR InterPro; IPR016174; Di-haem_cyt_TM. DR Pfam; PF00032; Cytochrom_B_C; 1. DR Pfam; PF00033; Cytochrome_B; 1. DR SUPFAM; SSF81342; SSF81342; 1. DR SUPFAM; SSF81648; SSF81648; 1. DR PROSITE; PS51003; CYTB_CTER; 1. DR PROSITE; PS51002; CYTB_NTER; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 68 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 95 115 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 127 149 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 156 175 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 187 207 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 214 236 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 273 293 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 305 326 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 346 366 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 396 420 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 426 445 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 15 223 CYTB_NTER. {ECO:0000259|PROSITE:PS51002}. FT DOMAIN 245 368 CYTB_CTER. {ECO:0000259|PROSITE:PS51003}. SQ SEQUENCE 531 AA; 59502 MW; 210E377E85DB7229 CRC64; MAVSLEPRRN GVVEFLYWLW EGVDRTIFTA IKFSFPARFV SPFGFLGMLT FIVFIILGIS GALLMFYYQP ILDRAWDSVQ FINDEVPFGF HIRNIHYHGS NAMVLLAVLH MYYQYFSGRY KIRNEVLWMT GVILGVVTIL EAFTGYDVIF SERAQLAISI AASLTTSIPV AGSVIRDAAL GSGFSDFVLR FYAQHVFLLP IVMLGLMAVH FPRFLVFDVP MVMAIAGAIL ITGGVFPIDL GFKFEPTVPP GVTVPEWYLT GIYAFMRTQY DKFVTGLLWP LIFIISFVLI PFIDRYKKFS WRDRPIITAF GITSLAQIMV TTYWGFYISP DISIPLVERL VIDPVFFYSV MILLVPMSFG FTYMMIKLAN EAERKSKLAK NTGPQKVATL DLSEKWINWL LVALLAFQVF LNIAAYNAAL TGMNNMSLFF VGLILMVFAG FFHIYRYGMS QQKNAPPAPP APVSDEKPKL AEPEESSQPE ESAKLPEGET AAEKPEEKPI APEVSAPKTQ ADLGVGADNN PNLGTGDLNK P // ID A9A4S4_NITMS Unreviewed; 754 AA. AC A9A4S4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE SubName: Full=Aconitate hydratase {ECO:0000313|EMBL:ABX13378.1}; DE EC=4.2.1.3 {ECO:0000313|EMBL:ABX13378.1}; GN OrderedLocusNames=Nmar_1482 {ECO:0000313|EMBL:ABX13378.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13378.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13378.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13378.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13378.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4S4; -. DR SMR; A9A4S4; 13-754. DR STRING; 436308.Nmar_1482; -. DR EnsemblBacteria; ABX13378; ABX13378; Nmar_1482. DR KEGG; nmr:Nmar_1482; -. DR eggNOG; arCOG01697; Archaea. DR eggNOG; COG1048; LUCA. DR HOGENOM; HOG000224293; -. DR KO; K01681; -. DR OMA; VFTNACG; -. DR BioCyc; NMAR436308:GI3J-1520-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro. DR GO; GO:0003994; F:aconitate hydratase activity; IEA:UniProtKB-EC. DR GO; GO:0006099; P:tricarboxylic acid cycle; IEA:InterPro. DR Gene3D; 3.20.19.10; -; 1. DR Gene3D; 3.30.499.10; -; 2. DR Gene3D; 3.40.1060.10; -; 1. DR InterPro; IPR015931; Acnase/IPM_dHydase_lsu_aba_1/3. DR InterPro; IPR015937; Acoase/IPM_deHydtase. DR InterPro; IPR001030; Acoase/IPM_deHydtase_lsu_aba. DR InterPro; IPR015928; Aconitase/3IPM_dehydase_swvl. DR InterPro; IPR015932; Aconitase/IPMdHydase_lsu_aba_2. DR InterPro; IPR018136; Aconitase_4Fe-4S_BS. DR InterPro; IPR006248; Aconitase_mito-like. DR InterPro; IPR000573; AconitaseA/IPMdHydase_ssu_swvl. DR PANTHER; PTHR11670; PTHR11670; 1. DR Pfam; PF00330; Aconitase; 1. DR Pfam; PF00694; Aconitase_C; 1. DR PRINTS; PR00415; ACONITASE. DR SUPFAM; SSF52016; SSF52016; 1. DR SUPFAM; SSF53732; SSF53732; 1. DR TIGRFAMs; TIGR01340; aconitase_mito; 1. DR PROSITE; PS00450; ACONITASE_1; 1. DR PROSITE; PS01244; ACONITASE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX13378.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 36 478 Aconitase. {ECO:0000259|Pfam:PF00330}. FT DOMAIN 560 687 Aconitase_C. {ECO:0000259|Pfam:PF00694}. SQ SEQUENCE 754 AA; 82387 MW; 0A7B6EC23318AAC9 CRC64; MNIDSTPELV SGVYAKLKEN IAKFRNVTGR PLTLTEKILS GHLNQIDDTN FTGGKDYVFL KPDRVALQDV TGQMVMLQFM QAGLKQTALP TTVHCDHLIR AEVQGDVDMK VSLDENSEVF KFLQSAAAKY GCGFWKPGAG IIHQVVLENY AFPGGLMIGT DSHTPNAGGL GMIAIGVGGL DAAETMAGMP WELLYPKRIG VKLTGELNGW TAPKDIILKV ADELTVSGGT NSIVEYFGPG TKSISCTGKA TITNMGAEIG ATCSVFPYDE RMETYLKYTN RGDIAELANQ NKESLVADPE VESNPEKFFD KVIEINLSTL EPHIVGPHTP DLARSISELS DDVKSKDYVD PISVALIGSC TNSSYEDMSR AASLAEQAKA KGIKAKIPLL VTPGSEQIRG TIERDGQMDS LKDIGATVLA NACGPCIGQW NRPELDKDEQ NTIVTTFNRN FPGRNDGHRS TLNFIGSPEM IIALSLGGRL SFNPLVDELT AADGTKFKLE PPKPAPEVPE EGFMRPEGIF VAPPENSDDV EVIIDPNSKR LQRLEPFPVW DGKDFEEVPI MVKAKGKCTT DHISPAGAWL SLRGHLDNLS DNMLLGAVNA YNDEVGKGKN VLNGELESFS QIARQYKEKQ MRWVIIGDNN YGEGSSREHA AMTPRYLGCA AVITKSLARI HETNLKKQGL LALTFTNPDD YEKILEDDKI SLVDLNNLQP GQQVKCIITH ADGNKEEIML NHSYNKSQIE WFKAGSALNV LRNK // ID A9A1U8_NITMS Unreviewed; 215 AA. AC A9A1U8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX12069.1}; GN OrderedLocusNames=Nmar_0173 {ECO:0000313|EMBL:ABX12069.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12069.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12069.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12069.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12069.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U8; -. DR STRING; 436308.Nmar_0173; -. DR EnsemblBacteria; ABX12069; ABX12069; Nmar_0173. DR KEGG; nmr:Nmar_0173; -. DR eggNOG; arCOG01259; Archaea. DR eggNOG; COG1028; LUCA. DR HOGENOM; HOG000110831; -. DR KO; K00059; -. DR BioCyc; NMAR436308:GI3J-174-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR002347; SDR_fam. DR PRINTS; PR00081; GDHRDH. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 215 AA; 23839 MW; ED018A42B7DE7523 CRC64; MTSAIVLGGS RGIGKAISES LKSLEIDVFA ASKNDIDTSN LDSVREFLKN HNQTDILVLN TGGPEPKPFA TITEDDWKLY HNQLFLGFVT ILQNIKINNG GYIFLISSSV IKEPNSKLII SSAYRAAFAE IFKVLSKEYA KNQISCINIA PGPINTDRTQ ELIENVEEYQ KSLPMKRLGE PDEIGNFVKS IVQNKIKYLS GVTINFDGAN SNYIF // ID A9A236_NITMS Unreviewed; 260 AA. AC A9A236; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE RecName: Full=2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000256|HAMAP-Rule:MF_00960}; DE Short=ADH synthase {ECO:0000256|HAMAP-Rule:MF_00960}; DE Short=ADHS {ECO:0000256|HAMAP-Rule:MF_00960}; DE Short=ADTH synthase {ECO:0000256|HAMAP-Rule:MF_00960}; DE EC=2.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00960}; GN Name=aroA' {ECO:0000256|HAMAP-Rule:MF_00960}; GN OrderedLocusNames=Nmar_0553 {ECO:0000313|EMBL:ABX12449.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12449.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12449.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12449.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes a transaldol reaction between 6-deoxy-5- CC ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) CC with an elimination of hydroxypyruvaldehyde phosphate to yield 2- CC amino-3,7-dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role CC in an alternative pathway of the biosynthesis of 3-dehydroquinate CC (DHQ), which is involved in the canonical pathway for the CC biosynthesis of aromatic amino acids. {ECO:0000256|HAMAP- CC Rule:MF_00960}. CC -!- CATALYTIC ACTIVITY: L-aspartate 4-semialdehyde + 1-deoxy-D-threo- CC hexo-2,5-diulose 6-phosphate = 2-amino-2,3,7-trideoxy-D-lyxo-hept- CC 6-ulosonate + 2,3-dioxopropylaldehyde phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00960}. CC -!- SUBUNIT: Homodecamer. {ECO:0000256|HAMAP-Rule:MF_00960}. CC -!- SIMILARITY: Belongs to the DeoC/FbaB aldolase family. ADHS CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00960}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12449.1; -; Genomic_DNA. DR ProteinModelPortal; A9A236; -. DR STRING; 436308.Nmar_0553; -. DR EnsemblBacteria; ABX12449; ABX12449; Nmar_0553. DR KEGG; nmr:Nmar_0553; -. DR eggNOG; arCOG04044; Archaea. DR eggNOG; COG1830; LUCA. DR HOGENOM; HOG000224790; -. DR KO; K16306; -. DR OMA; SLHINIG; -. DR BioCyc; NMAR436308:GI3J-575-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016836; F:hydro-lyase activity; IEA:InterPro. DR GO; GO:0016744; F:transferase activity, transferring aldehyde or ketonic groups; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00960; ADH_synthase; 1. DR InterPro; IPR010210; ADH_synthase. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR002915; DeoC/FbaB/lacD_aldolase. DR Pfam; PF01791; DeoC; 1. DR PIRSF; PIRSF038992; Aldolase_Ia; 1. DR SMART; SM01133; DeoC; 1. DR TIGRFAMs; TIGR01949; AroFGH_arch; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00960}; KW Aromatic amino acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00960}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12449.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Schiff base {ECO:0000256|HAMAP-Rule:MF_00960}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00960}. FT REGION 24 28 DKFP binding. {ECO:0000256|HAMAP- FT Rule:MF_00960}. FT REGION 142 144 DKFP binding. {ECO:0000256|HAMAP- FT Rule:MF_00960}. FT REGION 198 199 DKFP binding. {ECO:0000256|HAMAP- FT Rule:MF_00960}. FT REGION 226 227 DKFP binding. {ECO:0000256|HAMAP- FT Rule:MF_00960}. FT ACT_SITE 24 24 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00960}. FT ACT_SITE 142 142 Proton donor. {ECO:0000256|HAMAP- FT Rule:MF_00960}. FT ACT_SITE 173 173 Schiff-base intermediate with substrate. FT {ECO:0000256|HAMAP-Rule:MF_00960}. SQ SEQUENCE 260 AA; 27836 MW; EA492152C90F23D7 CRC64; MVSGNQIRLN RILRKGKMLC IPMDHGISNG PIEGLEDPAS TIYKCEGHGL TSVIINKGII KSLPKPPKVG VLVHFSSSTA LSLSPNRKML TGTVKEAVAL GADGVSLHIN IGGKEEPEML EQLGLTADQC HRWGMPLLAM MYPRGENIKD PHDPEVVAHV ARIGAECGAD IVKTLYTGDI DSFSKVVKST PVPIVIAGGP KAKTDLDILQ MTEDAIAAGA KGVTYGRNIF AHKAPEKMVE ALAEIIFRKG TAKEAMKKIE // ID A9A3A2_NITMS Unreviewed; 292 AA. AC A9A3A2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE SubName: Full=2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:ABX12531.1}; DE EC=1.1.1.60 {ECO:0000313|EMBL:ABX12531.1}; GN OrderedLocusNames=Nmar_0635 {ECO:0000313|EMBL:ABX12531.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12531.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12531.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12531.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12531.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3A2; -. DR STRING; 436308.Nmar_0635; -. DR EnsemblBacteria; ABX12531; ABX12531; Nmar_0635. DR KEGG; nmr:Nmar_0635; -. DR eggNOG; arCOG00247; Archaea. DR eggNOG; COG2084; LUCA. DR HOGENOM; HOG000105605; -. DR KO; K00020; -. DR OMA; CLEDLAY; -. DR BioCyc; NMAR436308:GI3J-660-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008679; F:2-hydroxy-3-oxopropionate reductase activity; IEA:UniProtKB-EC. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0004616; F:phosphogluconate dehydrogenase (decarboxylating) activity; IEA:InterPro. DR Gene3D; 1.10.1040.10; -; 1. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR013328; 6PGD_dom_2. DR InterPro; IPR006115; 6PGDH_NADP-bd. DR InterPro; IPR015815; HIBADH-related. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR029154; NADP-bd. DR Pfam; PF14833; NAD_binding_11; 1. DR Pfam; PF03446; NAD_binding_2; 1. DR PIRSF; PIRSF000103; HIBADH; 1. DR SUPFAM; SSF48179; SSF48179; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12531.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 162 NAD_binding_2. FT {ECO:0000259|Pfam:PF03446}. FT DOMAIN 165 284 NAD_binding_11. FT {ECO:0000259|Pfam:PF14833}. SQ SEQUENCE 292 AA; 31958 MW; B7CE837026E1B09E CRC64; MKKIGIVGLG MLGNAVGLHL LESGFEVTVF NRSKDKTIQA KEKGATVVDS PKEVAEKSDL VIIVVKDADA VKEVSFEREG IIKSENKKLI VADMSTIDPS ESKNISDKFL EFGIHKLDIP VMGGPNVAIT GDLVMMASGN KESFEECKKV FEKIANKVFF LGEKGVAHSI KLAMNLQITM LALALSEGIT LVKKADVDPK IFLEILNSTY FKTGMSENKA FKMIDGKYDP TFTLENLKKD IITMTNAAKS LGIKLPMIEK AEEVYGNAVK EGLGGIDYTG IIEYIKRINE SK // ID A9A2U1_NITMS Unreviewed; 280 AA. AC A9A2U1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 40. DE SubName: Full=Methyltransferase type 11 {ECO:0000313|EMBL:ABX13618.1}; GN OrderedLocusNames=Nmar_1722 {ECO:0000313|EMBL:ABX13618.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13618.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13618.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13618.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13618.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U1; -. DR STRING; 436308.Nmar_1722; -. DR EnsemblBacteria; ABX13618; ABX13618; Nmar_1722. DR KEGG; nmr:Nmar_1722; -. DR eggNOG; arCOG04347; Archaea. DR eggNOG; COG0500; LUCA. DR HOGENOM; HOG000109247; -. DR OMA; AGFNRIA; -. DR BioCyc; NMAR436308:GI3J-1767-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13618.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13618.1}. SQ SEQUENCE 280 AA; 32232 MW; BF89BB5B450B7B2B CRC64; MKVKPFDYKK RNMAVWNEVA PRYHKRWATA KRGPFQSTKK LVELIDVKKG DHILDVASGT GVVTKLLNQK VGKSGFVVGA DTATTAIKVA KKWNKKSPNL LFVNADAENF SFKEKFDIIT CQYALFFFPN AQKALKNMKN SLKESGKLGL SVHGHPDRVP YFDSIFEAVT QFIPNYVPPG TPDFDRFGTK KALRDEIKKA GFRKITVKDY NFPYSPGTFD QYWSNYLRYV AKPIKEKLDL LERSQRKELK ERVKENTKPY TKKNGIIQFP WEVLILTAKH // ID A9A411_NITMS Unreviewed; 555 AA. AC A9A411; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:ABX12195.1}; GN OrderedLocusNames=Nmar_0299 {ECO:0000313|EMBL:ABX12195.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12195.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12195.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12195.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12195.1; -; Genomic_DNA. DR ProteinModelPortal; A9A411; -. DR STRING; 436308.Nmar_0299; -. DR EnsemblBacteria; ABX12195; ABX12195; Nmar_0299. DR KEGG; nmr:Nmar_0299; -. DR eggNOG; arCOG01053; Archaea. DR eggNOG; arCOG05046; Archaea. DR eggNOG; ENOG4102UA4; Archaea. DR eggNOG; COG0036; LUCA. DR eggNOG; COG3959; LUCA. DR HOGENOM; HOG000105118; -. DR KO; K00615; -. DR OMA; CPGVEFC; -. DR BioCyc; NMAR436308:GI3J-312-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016857; F:racemase and epimerase activity, acting on carbohydrates and derivatives; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR Gene3D; 3.40.50.970; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR000056; Ribul_P_3_epim-like. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR033247; Transketolase_fam. DR InterPro; IPR005474; Transketolase_N. DR PANTHER; PTHR11624; PTHR11624; 1. DR Pfam; PF00834; Ribul_P_3_epim; 1. DR Pfam; PF00456; Transketolase_N; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR SUPFAM; SSF52518; SSF52518; 1. DR PROSITE; PS01085; RIBUL_P_3_EPIMER_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 281 TRANSKETOLASE_1. FT {ECO:0000259|Pfam:PF00456}. SQ SEQUENCE 555 AA; 61649 MW; 488C5EFA0DE05203 CRC64; MGLNYYQIKK HVLRARKLVI KATNTAGSGH PGGSFSMAEI LGCLFNKYLK FDPKNPQWED RDRLVLSKGH AAPGLFSNMA VAGYFPESEL ETLRKFGSKL QGHPDLKCPG VEFCGGSLGT GLSYSVGIAL AGKIDSKDYH VYTIIGDGES DEGQVWEAAM TAAKYKVDNL TVFLDRNFIQ QDSYTEKIMP LDKKLETDDL SEMWKDASRW KTGDKWRSFG WNVIEIDGHR VEQIDAAITK ANTIKGVPTI IISRTIKGKA VEHMEDNPAW HGKAPDSDVV PIINMELDSQ FMIAPSIIAG DMSNLENEVK RCVSGRADYI HLDVMDGQFV PNKTFDHIKI KELRPLTVIP FDSHLMINEP VKHVRDYIDA GSDIITVHAE VTDESSFGEI HDVLKQNQVG IGFAINPDTE LPEWSYKFIP SLDQLIVMSV VPGKSGQKYI EETHAKMARL NTILNEHNFS GYIEADGGVN LENIGSVFAD GARAFVGGGA IIGQQDVRAA IRDFRTEVLS SRRQLLLDKA NDLGGTELVN KWIGLHVVGE KQEQIKKIAE ERGYL // ID A9A2X6_NITMS Unreviewed; 236 AA. AC A9A2X6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=Peptidase S26B, signal peptidase {ECO:0000313|EMBL:ABX12104.1}; GN OrderedLocusNames=Nmar_0208 {ECO:0000313|EMBL:ABX12104.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12104.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12104.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12104.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12104.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2X6; -. DR STRING; 436308.Nmar_0208; -. DR EnsemblBacteria; ABX12104; ABX12104; Nmar_0208. DR KEGG; nmr:Nmar_0208; -. DR eggNOG; arCOG01739; Archaea. DR eggNOG; COG0681; LUCA. DR KO; K13280; -. DR OMA; HEPFNEL; -. DR BioCyc; NMAR436308:GI3J-212-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008233; F:peptidase activity; IEA:InterPro. DR GO; GO:0006465; P:signal peptide processing; IEA:InterPro. DR Gene3D; 2.10.109.10; -; 1. DR InterPro; IPR028360; Peptidase_S24/S26_b-rbn. DR InterPro; IPR019759; Peptidase_S24_S26. DR InterPro; IPR015927; Peptidase_S24_S26A/B/C. DR InterPro; IPR001733; Peptidase_S26B. DR PANTHER; PTHR10806; PTHR10806; 1. DR Pfam; PF00717; Peptidase_S24; 1. DR SUPFAM; SSF51306; SSF51306; 1. DR TIGRFAMs; TIGR02228; sigpep_I_arch; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 163 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 41 90 Peptidase_S24. FT {ECO:0000259|Pfam:PF00717}. SQ SEQUENCE 236 AA; 26409 MW; 816AF36233E4D61E CRC64; MGKKSISKGV IKDIIIVAVG VLVIWIGLQI AFGTPNPFYV VASGSMIPAL EVYDVLMVSG HEPFNELEVG DIIVFDRPSD HNRVIVHRVA SILDEDPRTI RTKGDANPAS IPGTDFPITE EEYIGKVAYT LPQVGYVTQL LKPPINYVII AIVIGIMIFK QFAKRKEEKE LPFEDPMDSE NPDTIEELSD IDKIEEDTEY SESTELNNVE KNDESTETKS DDPTEHSEES KEEKKE // ID A9A179_NITMS Unreviewed; 158 AA. AC A9A179; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12365.1}; GN OrderedLocusNames=Nmar_0469 {ECO:0000313|EMBL:ABX12365.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12365.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12365.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12365.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12365.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12365; ABX12365; Nmar_0469. DR KEGG; nmr:Nmar_0469; -. DR eggNOG; arCOG10527; Archaea. DR eggNOG; ENOG41111AI; LUCA. DR OMA; CRIDERV; -. DR BioCyc; NMAR436308:GI3J-489-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 158 AA; 18821 MW; 734AEB4856F07487 CRC64; MIFSELISDL QDALKKDLAQ IRFLLKKNPA MGYTRIVEIG KEVGKKYNIK LVVNFPKEGR IEEFEMYGKR DLSLIVDYER KRFPIDREQI KQKALEFLGN VQTEDAYMYE NKEGVRVFGE NWKIDILPHS VHIWTEFDDK VTAFCDWLME NAYQMKKK // ID A9A4W1_NITMS Unreviewed; 187 AA. AC A9A4W1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; DE AltName: Full=Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; DE AltName: Full=TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; DE AltName: Full=TATA-box factor {ECO:0000256|HAMAP-Rule:MF_00408}; GN Name=tbp {ECO:0000256|HAMAP-Rule:MF_00408}; GN OrderedLocusNames=Nmar_1519 {ECO:0000313|EMBL:ABX13415.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13415.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13415.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13415.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: General factor that plays a role in the activation of CC archaeal genes transcribed by RNA polymerase. Binds specifically CC to the TATA box promoter element which lies close to the position CC of transcription initiation. {ECO:0000256|HAMAP-Rule:MF_00408, CC ECO:0000256|RuleBase:RU000523}. CC -!- SIMILARITY: Belongs to the TBP family. {ECO:0000256|HAMAP- CC Rule:MF_00408, ECO:0000256|RuleBase:RU000523}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13415.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4W1; -. DR STRING; 436308.Nmar_1519; -. DR EnsemblBacteria; ABX13415; ABX13415; Nmar_1519. DR KEGG; nmr:Nmar_1519; -. DR eggNOG; arCOG01764; Archaea. DR eggNOG; COG2101; LUCA. DR HOGENOM; HOG000105163; -. DR KO; K03120; -. DR OMA; MDCLEAI; -. DR BioCyc; NMAR436308:GI3J-1561-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR Gene3D; 3.30.310.10; -; 2. DR HAMAP; MF_00408; TATA_bind_prot_arch; 1. DR InterPro; IPR012295; Beta2_adaptin/TBP_C_dom. DR InterPro; IPR000814; TBP. DR InterPro; IPR030491; TBP_CS. DR PANTHER; PTHR10126; PTHR10126; 1. DR Pfam; PF00352; TBP; 2. DR PRINTS; PR00686; TIFACTORIID. DR PROSITE; PS00351; TFIID; 2. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00408, KW ECO:0000256|RuleBase:RU000523}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repeat {ECO:0000256|HAMAP-Rule:MF_00408}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00408, KW ECO:0000256|RuleBase:RU000523}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00408, KW ECO:0000256|RuleBase:RU000523}. FT REPEAT 10 86 1. {ECO:0000256|HAMAP-Rule:MF_00408}. FT REPEAT 101 177 2. {ECO:0000256|HAMAP-Rule:MF_00408}. SQ SEQUENCE 187 AA; 20857 MW; B164DC940F13E31B CRC64; MPQTKPIVSV ENVVASASVD QKIDLNEITE KFPDTEYHPE QFPGLVFRLS TPRTATLIFR TGKMVCTGAK SEEMAIKAVN TVVQKLRKGK IKIKNDAVIT VQNIVAAINL GGKIHLEKAA RTLPRSMYEP EQFPGLIHRM LDPKTVILLF ASGKLVCTGA KKESDVYRSV HNLHSVLEEK NLMIYDE // ID A9A4T5_NITMS Unreviewed; 109 AA. AC A9A4T5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13389.1}; GN OrderedLocusNames=Nmar_1493 {ECO:0000313|EMBL:ABX13389.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13389.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13389.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13389.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13389.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1493; -. DR EnsemblBacteria; ABX13389; ABX13389; Nmar_1493. DR KEGG; nmr:Nmar_1493; -. DR eggNOG; arCOG08641; Archaea. DR eggNOG; ENOG41111FI; LUCA. DR HOGENOM; HOG000105096; -. DR OMA; RLYFLKV; -. DR BioCyc; NMAR436308:GI3J-1531-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 109 AA; 12933 MW; CFEFDABF718B52E6 CRC64; MAIIKHMMNK IDTDVANLKQ GLHPQNLSYW YDKIIKETIE MAPPWLQDKI KVHQDPILLM KFNLDISKRA VRYFMIAVDN NLDDMPYSTR LYFLKVQEIM STEMDKSLV // ID A9A1L9_NITMS Unreviewed; 623 AA. AC A9A1L9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13534.1}; GN OrderedLocusNames=Nmar_1638 {ECO:0000313|EMBL:ABX13534.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13534.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13534.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13534.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13534.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1638; -. DR EnsemblBacteria; ABX13534; ABX13534; Nmar_1638. DR KEGG; nmr:Nmar_1638; -. DR eggNOG; arCOG08647; Archaea. DR eggNOG; arCOG08793; Archaea. DR eggNOG; ENOG410Z3CW; LUCA. DR eggNOG; ENOG41110FI; LUCA. DR BioCyc; NMAR436308:GI3J-1683-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 28 48 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 623 AA; 70531 MW; 9FB75096E05957B6 CRC64; MVHLSNEPFP LYSKQCFRFH MAKSMGTIAI FAFMVILTST ITISPVLADT GFTNVQKSAG IIMKFCANET FKLQDCNERY EGIGWTDRVN VLIYAPGWNE DDDKIEQIGT TSNPIDVYTD ANRVNGVEFT ETGPDTGIFM GVVKLTGAMR YTVHDTFLTT VKTPGMTMDP DGMNISAHDR AVMIATSTQD GRLTVDWEYN EDQHVYKTAY YTWQMGQAEF HKDTYDVNEK VTFFIRDTDL WKHHREFFTN YVKVYSDSDK AGIFVGVQFV KDMDHAKIQN AVYDRHLSEP AASSLTKYTP DGEWKTYLWT EPGGVIGVDQ DYDFNLMVHD GLTDIHEMGL SYDMDIYLNG ELIESRNDQY WVDGQGVEPI RFDERGSAKI VVSNIFDQPG QEVNFSFQVA PEAILEEVVP RHGSFEVGST PNYFVGYEHP HYINYLPGEF FMTTGDSSQE QNRLRVTNGD TIYIEYEDIT LPRPYTTADS MEIVARALVL DTGVHMVSDD SEIFVETPRP TVTPVSSDID MSKPTITSVS TDIAIPDWVK KNAMWWSDGQ INDPDFAKGI EYLVQENIIS VSAAEEIVDE DVNITSIPMW VRNNAGWWSE GHLTDVEFAN GIKFLMASGL IKV // ID A9A574_NITMS Unreviewed; 295 AA. AC A9A574; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12273.1}; GN OrderedLocusNames=Nmar_0377 {ECO:0000313|EMBL:ABX12273.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12273.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12273.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12273.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12273.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0377; -. DR EnsemblBacteria; ABX12273; ABX12273; Nmar_0377. DR KEGG; nmr:Nmar_0377; -. DR BioCyc; NMAR436308:GI3J-393-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 26 68 {ECO:0000256|SAM:Coils}. FT COILED 239 280 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 295 AA; 36202 MW; E6E3B54D65C1CC88 CRC64; MQKLLPILGL FAILIVGLTT PAMAEYDEWD DKYEQLEDEF EDKRHQIEKE FEQKYDELDK HYEELKAEIY EKIDSNSDLS YSEIDAMFYE LFLEFEEKEK ALESEMIKQF GELDESFENE LRNLDEQSRQ YYDEHEKEDD EFYENDPEWK SIEPLVDRIM KLVSMEKIQR LWEAGEIDQL VELIVSETDL SHEEAKRVVI FFEKYEDETH DEDYYYDDDY PEYDYREYDF EEYEYPESYP TDNEQILRLE QRIAELEEEN QMLLETIEEL EEKIIQVNAI MMEQVKFIYE WVQSQ // ID A9A170_NITMS Unreviewed; 600 AA. AC A9A170; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX12356.1}; GN OrderedLocusNames=Nmar_0460 {ECO:0000313|EMBL:ABX12356.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12356.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12356.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12356.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12356.1; -; Genomic_DNA. DR ProteinModelPortal; A9A170; -. DR STRING; 436308.Nmar_0460; -. DR EnsemblBacteria; ABX12356; ABX12356; Nmar_0460. DR KEGG; nmr:Nmar_0460; -. DR eggNOG; arCOG02358; Archaea. DR eggNOG; COG0642; LUCA. DR OMA; RMSMLIS; -. DR BioCyc; NMAR436308:GI3J-479-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR007891; CHASE3. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF05227; CHASE3; 2. DR Pfam; PF00672; HAMP; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00304; HAMP; 1. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50885; HAMP; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12356.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12356.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 317 337 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 338 390 HAMP. {ECO:0000259|PROSITE:PS50885}. FT DOMAIN 400 600 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 600 AA; 68160 MW; A09F450A7373FAED CRC64; MKIKSKLFFG FAVVVSITLF LGILTNSQSN IASDDFKSIA ERDLLVIQNA EKLQRLAVDS ENGQRGFIIT GNESFLEPYN RGVDEFFVLL EEEKNLVSYN PSQVEKLEHI SQLFSDWIES AGSPEIELAR QIHSSQDDAL ESILSNESDI ILDEIYQIIL LLEGNLRDSE NVDGFLLLGK IKADIYDTEV SQREYLISGN EDFLVSFNSV KIELRENIQN LENILKDDEE NLQLIYSIGK LYQKWDQEVV YPNIESRRNI VENYNLNEAS ILLEKETGKR ILDEIRTEFS EFIQIENENT QQRLENSLNN QELVRNVIII VLVASVVSAV VLAFLILNSV LNPLSKLEKV IQQFKEGDYA QKIDINSNDE LGDFSKSFDA IREILIKKEK LKNIGELATR LAHDLRNPLA VIQGAVNLMK TDLQEKDESL DKRFRMIDAA ILRMTHQIND VMDFVRVSNL QIETHSLLEL LQSSISRTTK NDSITIELPE NDIKLRCDAH KLDILFVNLL SNAIDAVKEN GTIKIRFFDE TSHVKIELED SGSPIPPNIL EEMFEPLFTT KQVGTGLGLA SCKNIVEQHR GEISAKTNPT VISLTLSKTL // ID A9A340_NITMS Unreviewed; 515 AA. AC A9A340; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Carboxyl transferase {ECO:0000313|EMBL:ABX12168.1}; GN OrderedLocusNames=Nmar_0272 {ECO:0000313|EMBL:ABX12168.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12168.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12168.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12168.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12168.1; -; Genomic_DNA. DR ProteinModelPortal; A9A340; -. DR SMR; A9A340; 3-515. DR STRING; 436308.Nmar_0272; -. DR EnsemblBacteria; ABX12168; ABX12168; Nmar_0272. DR KEGG; nmr:Nmar_0272; -. DR eggNOG; arCOG02705; Archaea. DR eggNOG; COG4799; LUCA. DR HOGENOM; HOG000218693; -. DR KO; K18604; -. DR OMA; YLAMGSK; -. DR BioCyc; NMAR436308:GI3J-282-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016874; F:ligase activity; IEA:InterPro. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.226.10; -; 2. DR InterPro; IPR000022; Carboxyl_trans. DR InterPro; IPR029045; ClpP/crotonase-like_dom. DR InterPro; IPR011763; COA_CT_C. DR InterPro; IPR011762; COA_CT_N. DR Pfam; PF01039; Carboxyl_trans; 1. DR SUPFAM; SSF52096; SSF52096; 2. DR PROSITE; PS50989; COA_CT_CTER; 1. DR PROSITE; PS50980; COA_CT_NTER; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12168.1}. FT DOMAIN 8 222 Carboxyltransferase. FT {ECO:0000259|PROSITE:PS50980}. FT DOMAIN 223 507 COA_CT_CTER. FT {ECO:0000259|PROSITE:PS50989}. SQ SEQUENCE 515 AA; 56746 MW; 47E042E26E46B1EB CRC64; MHSEKLENYN NKHKTSQQGG GQDRIKAQHD KGKLTARERI DLLLDEGSFT EIDPMVTHHY HEYDMQKKKF FTDGVVGGYG NVNGRQIFVF AYDFTVLGGT LSQMGAKKIT KLMDHAVRTG CPVIGIMDSG GARIQEGIMS LDGFADIFYH NQLASGVVPQ ITASIGPSAG GSVYSPAMTD FVVMVEKAGS MFVTGPDVVK TVLGEEISMD DLGGAMTHGS KSGVAHFVAQ NEYECMDYIK KLISYIPQNN SEEPPKIKTD DDPNRLDNNL INVIPENPLQ PYDMKEIINS IVDNHEFFEV HELFAPNIVV GYARMDGQVV GIIANNPMHL AGALDIDSSN KSARFIRFCD AFNIPIITLV DTPGYMPGSN QEHNGIIRHG SKLLYAYCEA TVPRITLVIG KAYGGAYIAM GSKNLRTDIN YAWPTARCAV LGGEAAVKIM NRKDLADADN PEELKKKLID EFTEKFENPY VAASHGTVDN VIDPAETRPM LIKALKMLAN KREKQLPRKH GNINL // ID A9A3Q0_NITMS Unreviewed; 263 AA. AC A9A3Q0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 59. DE RecName: Full=Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific {ECO:0000256|HAMAP-Rule:MF_01139}; DE EC=2.5.1.89 {ECO:0000256|HAMAP-Rule:MF_01139}; DE AltName: Full=Undecaprenyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; DE AltName: Full=Undecaprenyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; GN Name=uppS {ECO:0000256|HAMAP-Rule:MF_01139}; GN OrderedLocusNames=Nmar_1416 {ECO:0000313|EMBL:ABX13312.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13312.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13312.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13312.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the sequential condensation of isopentenyl CC diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield CC (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate CC (tritrans,heptacis-UPP). It is probably the precursor of glycosyl CC carrier lipids. {ECO:0000256|HAMAP-Rule:MF_01139}. CC -!- CATALYTIC ACTIVITY: Geranylgeranyl diphosphate + 7 isopentenyl CC diphosphate = 7 diphosphate + tritrans,heptacis-undecaprenyl CC diphosphate. {ECO:0000256|HAMAP-Rule:MF_01139}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01139}; CC Note=Binds 2 magnesium ions per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01139}; CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01139}. CC -!- SIMILARITY: Belongs to the UPP synthase family. CC {ECO:0000256|HAMAP-Rule:MF_01139}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13312.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Q0; -. DR STRING; 436308.Nmar_1416; -. DR EnsemblBacteria; ABX13312; ABX13312; Nmar_1416. DR KEGG; nmr:Nmar_1416; -. DR eggNOG; arCOG01532; Archaea. DR eggNOG; COG0020; LUCA. DR HOGENOM; HOG000006056; -. DR KO; K15888; -. DR OMA; WAKLKNK; -. DR BioCyc; NMAR436308:GI3J-1451-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004659; F:prenyltransferase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1180.10; -; 1. DR HAMAP; MF_01139; ISPT; 1. DR InterPro; IPR001441; UPP_synth-like. DR InterPro; IPR018520; UPP_synth-like_CS. DR PANTHER; PTHR10291; PTHR10291; 1. DR Pfam; PF01255; Prenyltransf; 1. DR SUPFAM; SSF64005; SSF64005; 1. DR TIGRFAMs; TIGR00055; uppS; 1. DR PROSITE; PS01066; UPP_SYNTHASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_01139}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01139}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01139, KW ECO:0000313|EMBL:ABX13312.1}. FT ACT_SITE 40 40 {ECO:0000256|HAMAP-Rule:MF_01139}. FT ACT_SITE 88 88 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_01139}. FT METAL 40 40 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_01139}. FT METAL 231 231 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_01139}. FT BINDING 45 45 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01139}. FT BINDING 54 54 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01139}. FT BINDING 57 57 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01139}. FT BINDING 91 91 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01139}. FT BINDING 212 212 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01139}. SQ SEQUENCE 263 AA; 30760 MW; E293C28C284AD0C0 CRC64; MSKIKDVLLQ LSGLYKIYGK RLESEIQTGD IPNHVALILD GNRRWAKRHL SLPKAGHWKG ADAVENLLDW CEEFNIKIVT LYALSAENLD RNDEELDHLY ELIRMRLEKL YNDPRIHRSK MRVKGIGRIE LLPDSIKEIL QKLDDATKDY DNHFLNIALA YGGQYELVDA VKKIGEKIKD GQLDVEKITK KEIESNLYTS HLPQSSPDMI LRTSGEKRLS GFLMWQSAYS ELVFMDIFWP EFRKIDLMRA IRTFQERKRR LGK // ID A9A3I7_NITMS Unreviewed; 120 AA. AC A9A3I7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ABX12919.1}; GN OrderedLocusNames=Nmar_1023 {ECO:0000313|EMBL:ABX12919.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12919.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12919.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12919.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12919.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3I7; -. DR STRING; 436308.Nmar_1023; -. DR EnsemblBacteria; ABX12919; ABX12919; Nmar_1023. DR KEGG; nmr:Nmar_1023; -. DR eggNOG; arCOG03003; Archaea. DR eggNOG; COG0662; LUCA. DR HOGENOM; HOG000219786; -. DR OMA; FLCIVEP; -. DR BioCyc; NMAR436308:GI3J-1054-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.120.10; -; 1. DR InterPro; IPR013096; Cupin_2. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin. DR Pfam; PF07883; Cupin_2; 1. DR SUPFAM; SSF51182; SSF51182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 40 107 Cupin_2. {ECO:0000259|Pfam:PF07883}. SQ SEQUENCE 120 AA; 13683 MW; 3A315BE22DB55BEC CRC64; MSLRKNSEIE SIQGAEGTSI KQFFHPHNTL EGIGYSLAQF TLEPGKESKL HMLKSSEIYY ILEGKANLRI DDEIMELQKD DSAYVPPNSK QNIKNIGEEN LRFLCIVEPA WKADDEIILE // ID A9A1M5_NITMS Unreviewed; 386 AA. AC A9A1M5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13540.1}; GN OrderedLocusNames=Nmar_1644 {ECO:0000313|EMBL:ABX13540.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13540.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13540.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13540.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13540.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1644; -. DR EnsemblBacteria; ABX13540; ABX13540; Nmar_1644. DR KEGG; nmr:Nmar_1644; -. DR eggNOG; arCOG08728; Archaea. DR eggNOG; ENOG4110ZS3; LUCA. DR OMA; HEDASIW; -. DR BioCyc; NMAR436308:GI3J-1689-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 386 AA; 43971 MW; 80B213CD54E20893 CRC64; MSFAEVYVPL HEYLGYFDST GIYTVVGNVK NENDFAIIPT ITVSVIENSE TISKTIQHVP LAAGTEIPFK IKFPEVQSNT PVLVNPELIY EQTMTNPVPI QILYDKTLVK HEDGHISGRI QNTGNETIHF PKIFAVVHGY EKVLDITQNI EYIEKIEPGE ILDFTMYPDP SVTEDIFYYS CFAPVDTTVI PVTAKKNGGD FDFRYDSGAW YSAAKFDESG TTMTIRGYNS YPLETYANFE FAPISGNEKF SVTLNDEPIE FIQSIDDMGF WHVAFTVEPQ SQGVLKISGF DKGLPPELPT VPVWVKQNAD WWATQQIPDS EFLEGIDFLF EKQILSVPTR EVVSESQWKI PQWVQIPAGW WYEEKITDEQ FLNIIENLVQ REIIVV // ID A9A1T7_NITMS Unreviewed; 98 AA. AC A9A1T7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABX12058.1}; GN OrderedLocusNames=Nmar_0162 {ECO:0000313|EMBL:ABX12058.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12058.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12058.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12058.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12058.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T7; -. DR STRING; 436308.Nmar_0162; -. DR EnsemblBacteria; ABX12058; ABX12058; Nmar_0162. DR KEGG; nmr:Nmar_0162; -. DR eggNOG; arCOG02852; Archaea. DR eggNOG; COG2146; LUCA. DR BioCyc; NMAR436308:GI3J-163-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 2.102.10.10; -; 1. DR InterPro; IPR017941; Rieske_2Fe-2S. DR Pfam; PF00355; Rieske; 1. DR SUPFAM; SSF50022; SSF50022; 1. DR PROSITE; PS51296; RIESKE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 95 Rieske. {ECO:0000259|PROSITE:PS51296}. SQ SEQUENCE 98 AA; 10933 MW; 396963C84052F42A CRC64; MKFTVKKQDI PIGKLVEVSV SPKIIVFNNG EQIFAVSGIC PHAKWPLELG FVKGQTLTCG GHGWEFDISK GNCVTNPGRD LKNYRVIENQ NEVIIFDE // ID A9A2A0_NITMS Unreviewed; 395 AA. AC A9A2A0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 59. DE RecName: Full=Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; DE EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133}; GN Name=trpB {ECO:0000256|HAMAP-Rule:MF_00133}; GN OrderedLocusNames=Nmar_0915 {ECO:0000313|EMBL:ABX12811.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12811.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12811.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12811.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: The beta subunit is responsible for the synthesis of L- CC tryptophan from indole and L-serine. {ECO:0000256|HAMAP- CC Rule:MF_00133}. CC -!- CATALYTIC ACTIVITY: L-serine + 1-C-(indol-3-yl)glycerol 3- CC phosphate = L-tryptophan + D-glyceraldehyde 3-phosphate + H(2)O. CC {ECO:0000256|HAMAP-Rule:MF_00133}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00133}; CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 5/5. {ECO:0000256|HAMAP- CC Rule:MF_00133}. CC -!- SUBUNIT: Tetramer of two alpha and two beta chains. CC {ECO:0000256|HAMAP-Rule:MF_00133}. CC -!- SIMILARITY: Belongs to the TrpB family. {ECO:0000256|HAMAP- CC Rule:MF_00133}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12811.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2A0; -. DR SMR; A9A2A0; 9-385. DR STRING; 436308.Nmar_0915; -. DR EnsemblBacteria; ABX12811; ABX12811; Nmar_0915. DR KEGG; nmr:Nmar_0915; -. DR eggNOG; arCOG01433; Archaea. DR eggNOG; COG0133; LUCA. DR HOGENOM; HOG000161710; -. DR KO; K01696; -. DR OMA; IPEMLYP; -. DR BioCyc; NMAR436308:GI3J-943-MONOMER; -. DR UniPathway; UPA00035; UER00044. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004834; F:tryptophan synthase activity; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00133; Trp_synth_beta; 1. DR InterPro; IPR006653; Trp_synth_b_CS. DR InterPro; IPR006654; Trp_synth_beta. DR InterPro; IPR023026; Trp_synth_beta/beta-like. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR PANTHER; PTHR10314:SF3; PTHR10314:SF3; 1. DR Pfam; PF00291; PALP; 1. DR PIRSF; PIRSF001413; Trp_syn_beta; 1. DR SUPFAM; SSF53686; SSF53686; 1. DR TIGRFAMs; TIGR00263; trpB; 1. DR PROSITE; PS00168; TRP_SYNTHASE_BETA; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00133}; KW Aromatic amino acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00133}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00133}; KW Pyridoxal phosphate {ECO:0000256|HAMAP-Rule:MF_00133, KW ECO:0000256|RuleBase:RU003663}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Tryptophan biosynthesis {ECO:0000256|HAMAP-Rule:MF_00133}. FT DOMAIN 53 376 PALP. {ECO:0000259|Pfam:PF00291}. FT MOD_RES 88 88 N6-(pyridoxal phosphate)lysine. FT {ECO:0000256|HAMAP-Rule:MF_00133}. SQ SEQUENCE 395 AA; 43364 MW; BC22331A4BE9EBA5 CRC64; MKYPKNGRFG EFGGKYIPET LVPAIEELEE NYLKFKNDKN FKKELDYYLK VYAGRPTPLY YAKNLSEKLG GAKIYLKRED LLHGGAHKIN NTLGQALLAK KMKKKRIIAE TGAGQHGVAT AMACATLGMK AEVYMGYKDT IRQKLNVFRM NLLGSKVHPV KSGSKTLKDA INEAIRDWIT NVETTYYLLG SAVGPHPYPV MVRDFQSVIG NEIKSQMKKL NKTPDSVIAC VGGGSNAIGT FYPLVDSNAE IIGVEAAGHG LKSKKHSATL SAGSKGVLHG MMTYLLQDKE GQITETHSIS AGLDYPGVGP EHSYFKDTKR VKYHAATDTE VIDAFLMLTR TEGIIPALES AHAIAEAIKV ARKSKKSESI VVTLSGRGDK DVEEVQNYLS KNVKD // ID A9A3M8_NITMS Unreviewed; 382 AA. AC A9A3M8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 44. DE SubName: Full=tRNA (Guanine-N(2)-)-methyltransferase {ECO:0000313|EMBL:ABX13290.1}; GN OrderedLocusNames=Nmar_1394 {ECO:0000313|EMBL:ABX13290.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13290.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13290.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13290.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13290.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1394; -. DR EnsemblBacteria; ABX13290; ABX13290; Nmar_1394. DR KEGG; nmr:Nmar_1394; -. DR eggNOG; arCOG01219; Archaea. DR eggNOG; COG1867; LUCA. DR HOGENOM; HOG000229931; -. DR KO; K00555; -. DR OMA; TEYHAEV; -. DR BioCyc; NMAR436308:GI3J-1429-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0004809; F:tRNA (guanine-N2-)-methyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR002905; Trm1. DR PANTHER; PTHR10631; PTHR10631; 1. DR Pfam; PF02005; TRM; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00308; TRM1; 1. DR PROSITE; PS51626; SAM_MT_TRM1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13290.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13290.1}. SQ SEQUENCE 382 AA; 42966 MW; EA01DF8D78BC542F CRC64; MEIPNESLQE IVEGKTKLLV PKGSITEKVP PKEPAFFNPK ARLNRDFSII AYAAFLKNFQ GPKIFLEGLS GIGARGLRVA NELKIDNLVI NDLNPTALKM AEYSAKLNEI KNVEFLEKEV CRFFSNFSKK GERGSIVDID PFGSPAAFFD CGIRATMHGG ILSVAATDLQ VLNGLFQSAC KRKYGGVPVR AEYGNEIAIR LVLGCLRMVA ARLGVEVEPM FVESDMHYYR TYVKVRNRPD QDENIGYILH CKNCGHREMA LEQKQECKLC KSKISIAGPL WIGKIFDKKF IENMLIQIPN LEVDKVCEKT LNKCMLEAEM PGMYYTLDEI AKKMKSSPPK LEDVIENLKK NKFVASITSF SPTGFRTNAN INEITKIFET IQ // ID A9A4K3_NITMS Unreviewed; 1080 AA. AC A9A4K3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Carbamoyl-phosphate synthase, large subunit {ECO:0000313|EMBL:ABX12981.1}; GN OrderedLocusNames=Nmar_1085 {ECO:0000313|EMBL:ABX12981.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12981.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12981.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12981.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12981.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4K3; -. DR STRING; 436308.Nmar_1085; -. DR EnsemblBacteria; ABX12981; ABX12981; Nmar_1085. DR KEGG; nmr:Nmar_1085; -. DR eggNOG; arCOG01594; Archaea. DR eggNOG; COG0458; LUCA. DR HOGENOM; HOG000234583; -. DR KO; K01955; -. DR OMA; AVFPFNK; -. DR BioCyc; NMAR436308:GI3J-1116-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 1.10.1030.10; -; 1. DR Gene3D; 3.30.1490.20; -; 2. DR Gene3D; 3.30.470.20; -; 2. DR Gene3D; 3.40.50.1380; -; 1. DR Gene3D; 3.40.50.20; -; 2. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR006275; CarbamoylP_synth_lsu. DR InterPro; IPR005480; CarbamoylP_synth_lsu_oligo. DR InterPro; IPR005479; CbamoylP_synth_lsu-like_ATP-bd. DR InterPro; IPR005483; CbamoylP_synth_lsu_CPSase_dom. DR InterPro; IPR011607; MGS-like_dom. DR InterPro; IPR016185; PreATP-grasp_dom. DR Pfam; PF02786; CPSase_L_D2; 2. DR Pfam; PF02787; CPSase_L_D3; 1. DR Pfam; PF02142; MGS; 1. DR PRINTS; PR00098; CPSASE. DR SMART; SM01096; CPSase_L_D3; 1. DR SMART; SM00851; MGS; 1. DR SUPFAM; SSF48108; SSF48108; 1. DR SUPFAM; SSF52335; SSF52335; 1. DR SUPFAM; SSF52440; SSF52440; 2. DR TIGRFAMs; TIGR01369; CPSaseII_lrg; 1. DR PROSITE; PS50975; ATP_GRASP; 2. DR PROSITE; PS00866; CPSASE_1; 1. DR PROSITE; PS00867; CPSASE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 133 327 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. FT DOMAIN 676 867 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 1080 AA; 119743 MW; 5167E00102D92A02 CRC64; MPKNESLNKI LVLGSGAIKI GEAGEFDYSG SQCLKAIHED GLKSVLINPN IATIQTDTRF ADQVYLLPVN PQYVESVVEK ERPDGIMLAY GGQTALNCGV KLEEAGILQK YGVKVLGTQV QGIKNTEDRQ LFKDQMTEAG VPVLKSKTVT NVDDAKKVAE ELNYPVIVRV AYTLGGRGGG IAHNEIELHE IVERGLNASL VGQVLVEEYI GHWKQIEYEV MQDYDGNNVI VCNMENVLSM KVHTGDNIVV APSQTINNHE YHMLRSAALR ATKHVGIVGE CNIQYALDSD SDRYVAIEIN PRLSRSSALA SKATGYPLAY MSAKIGLGYS LSELVNRITK STTACFEPSL DYVVCKHPRW DFSKFEQVNR KLGVTMKSVG EVMAVGRTFE ESLQKAIRML AIGNDGLVLN RANGKKYTEE EIEFKLSHHD DEILYNVAIA LKMGISVERI YKLSAIDPWF IDKIQNILNA EAKIKESELD KSLMWDIKKL GFSDNQIARA KGSTPDEVRE IRKELGVVPS VKQIDTLAAE WPAVTNYLYL TYGGHSHDIE IPKDDPGIVV VGAGPYRIGS SVEFDWGTVN MVWGLQENGE KNVSVVNCNP ETVSTDYDIC TRLYFEELTQ ERLLDITDFE NPKGVITCVG GQTANNLTPG LAERGINILG TSAKDVDRAE DRSKFSAELD KLHIGQPRWQ AFSNLNEAKS FAQEVGFPVI VRPSYVLSGA AMKVVWSQEE LKTYVKEATD VSPDHPVVIS KFMLNSLEVD VDGISNGKEV VIGAIVEHID SAGVHSGDAM MCIPPWRLSN KIIETITDYT KRIALTFNVK GPFNLQFLIN NDQVYVIELN IRASRSMPFV SKLVKMNLIS LASKAILDKP LPKIPENKWQ KIHNYGIKVP QFSFMQLDGA DIALGVEMQS TGEAACFGNS FHDALAKGLT SVGIKLPQTG TAVVTVGGTE NKEKLLSSIA KLKQLGFKIM ATEHTAEFFE EKVGGIEIIH KISEPERLPN IADMLYERKI DFIINIPSTS TIEKYVGMLD DEYQIRRKAI ELGIPVLTTI ELADSFVKTL EWLQHNETTK DPIEPYDPIE // ID A9A5S8_NITMS Unreviewed; 151 AA. AC A9A5S8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13083.1}; GN OrderedLocusNames=Nmar_1187 {ECO:0000313|EMBL:ABX13083.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13083.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13083.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13083.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13083.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1187; -. DR EnsemblBacteria; ABX13083; ABX13083; Nmar_1187. DR KEGG; nmr:Nmar_1187; -. DR eggNOG; arCOG08690; Archaea. DR eggNOG; ENOG411107C; LUCA. DR HOGENOM; HOG000106543; -. DR OMA; SHTDQDM; -. DR BioCyc; NMAR436308:GI3J-1220-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 151 AA; 17695 MW; 50F3FBD74C86ADD1 CRC64; MWKLELDEEY FRIYDSKKMI VGYFDPDYGD IFPKENSEQI ISSMLKNHDK ILGGMVMVPL VKFGLFDKDL DTSITDVHEN VTRVNVHLDK WNDVLSEINC KFHSVRISHT DQDMLTITFP VLFSQPTPLK KEELAKELFS ILDLLQKRDL L // ID A9A1N5_NITMS Unreviewed; 240 AA. AC A9A1N5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 57. DE SubName: Full=ABC transporter related {ECO:0000313|EMBL:ABX13550.1}; GN OrderedLocusNames=Nmar_1654 {ECO:0000313|EMBL:ABX13550.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13550.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13550.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13550.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13550.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1N5; -. DR STRING; 436308.Nmar_1654; -. DR EnsemblBacteria; ABX13550; ABX13550; Nmar_1654. DR KEGG; nmr:Nmar_1654; -. DR eggNOG; arCOG00201; Archaea. DR eggNOG; COG1121; LUCA. DR KO; K09817; -. DR OMA; INKCCEL; -. DR BioCyc; NMAR436308:GI3J-1699-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 232 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 240 AA; 27462 MW; 94287C81BCE08B77 CRC64; MLKAVEISNL SVQYPDVKAL DDVSFVVNQG NFLGIIGPNG AGKSTLFDCM LGLNTKYKGE IKFFDKDIRI SKNYLKEIGY VPQKPIFEKN FPATVTDVVR MGLRNESDEN KINEILQQLW IHELRNRRIG ELSGGQLQRV FIAKALVNNP KLLILDEPIT GIDQQSIELF YSILRELNSK QKITIIWSSH DLDAVNQLAN HVACLNRTLF FHGESEKFFS DDELVKQYSE ASMQEHMHHH // ID A9A475_NITMS Unreviewed; 528 AA. AC A9A475; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 29. DE SubName: Full=Putative periplasmic ligand-binding sensor protein {ECO:0000313|EMBL:ABX12259.1}; GN OrderedLocusNames=Nmar_0363 {ECO:0000313|EMBL:ABX12259.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12259.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12259.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12259.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12259.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12259; ABX12259; Nmar_0363. DR KEGG; nmr:Nmar_0363; -. DR eggNOG; arCOG10350; Archaea. DR eggNOG; ENOG41122U8; LUCA. DR BioCyc; NMAR436308:GI3J-379-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 528 AA; 62747 MW; 0E4DBB9F94D2477A CRC64; MNSTQLLSVV LSMILVLGVS AGPAFAQVDD DMDDDRYDDD DRYDDDDRYD DDDRYDDDDR YDDDDRYDDD DRYDDDDRYD DDDRYDKHAD LDDRLEHFCE MTDEEKRQFF ADHPRIEQFA DRLANYCEMS EDERDDAIDE FIRENFPGEK EHDGEYDLGD LLDRFCAATD EDKRKLFADR PILEQFRDRL TNYCEMSDEE QDAVEDLLEN YKGEIKTAIK KYAADYKRDH AVDFREKLEN YCVMSDEDKK AYIAEHDKTE EHQTKMNTYC EADEAERKTF IKDNLETYKA HMKEKMHEKK HHMNYDKLCA MSESDRAAEI TDAVKLDRIS NWCSMTPEEK ADYKKKHHDS MKEKMMEKHH DMKFSEKSKH LKAMIMTKYD ISDERMDEIK KKYREKYGDL DKKHSELKMK FKEHMKKMKH SVSDERKSMI HDRIAEMKAF KSELRERAAE MTSEEKQQLR EEFIEKAKDM QLAWISPRIQ IAAGVDASEV ECREGYSLVM KTSNGVAMCL KADTALKMID RGIAVPAN // ID A9A3Q4_NITMS Unreviewed; 333 AA. AC A9A3Q4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 69. DE RecName: Full=Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; DE Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011}; DE Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011}; DE EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; DE AltName: Full=IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; GN Name=purA {ECO:0000256|HAMAP-Rule:MF_00011}; GN OrderedLocusNames=Nmar_1420 {ECO:0000313|EMBL:ABX13316.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13316.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13316.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13316.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Plays an important role in the de novo pathway of purine CC nucleotide biosynthesis. Catalyzes the first committed step in the CC biosynthesis of AMP from IMP. {ECO:0000256|HAMAP-Rule:MF_00011}. CC -!- CATALYTIC ACTIVITY: GTP + IMP + L-aspartate = GDP + phosphate + CC N(6)-(1,2-dicarboxyethyl)-AMP. {ECO:0000256|HAMAP-Rule:MF_00011, CC ECO:0000256|RuleBase:RU000520}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00011}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00011}; CC -!- PATHWAY: Purine metabolism; AMP biosynthesis via de novo pathway; CC AMP from IMP: step 1/2. {ECO:0000256|HAMAP-Rule:MF_00011, CC ECO:0000256|RuleBase:RU000520}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00011}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00011}. CC -!- SIMILARITY: Belongs to the adenylosuccinate synthetase family. CC {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13316.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Q4; -. DR STRING; 436308.Nmar_1420; -. DR EnsemblBacteria; ABX13316; ABX13316; Nmar_1420. DR KEGG; nmr:Nmar_1420; -. DR eggNOG; arCOG04387; Archaea. DR eggNOG; COG0104; LUCA. DR HOGENOM; HOG000260959; -. DR KO; K01939; -. DR OMA; VQVKYEV; -. DR BioCyc; NMAR436308:GI3J-1455-MONOMER; -. DR UniPathway; UPA00075; UER00335. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004019; F:adenylosuccinate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0044208; P:'de novo' AMP biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00011; Adenylosucc_synth; 1. DR InterPro; IPR018220; Adenylosuccin_syn_GTP-bd. DR InterPro; IPR001114; Adenylosuccinate_synthetase. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR11846; PTHR11846; 1. DR Pfam; PF00709; Adenylsucc_synt; 3. DR SMART; SM00788; Adenylsucc_synt; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS01266; ADENYLOSUCCIN_SYN_1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00011}; KW GTP-binding {ECO:0000256|HAMAP-Rule:MF_00011, KW ECO:0000256|RuleBase:RU000520}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00011, KW ECO:0000256|RuleBase:RU000520, ECO:0000313|EMBL:ABX13316.1}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00011, KW ECO:0000256|RuleBase:RU000520}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00011, KW ECO:0000256|RuleBase:RU000520}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00011, KW ECO:0000256|RuleBase:RU000520}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00011, KW ECO:0000256|RuleBase:RU000520}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT NP_BIND 12 18 GTP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT NP_BIND 42 44 GTP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT NP_BIND 280 282 GTP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT NP_BIND 320 322 GTP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT REGION 13 16 IMP binding. {ECO:0000256|HAMAP- FT Rule:MF_00011}. FT REGION 40 43 IMP binding. {ECO:0000256|HAMAP- FT Rule:MF_00011}. FT REGION 248 254 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00011}. FT ACT_SITE 13 13 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00011}. FT ACT_SITE 43 43 Proton donor. {ECO:0000256|HAMAP- FT Rule:MF_00011}. FT METAL 13 13 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00011}. FT METAL 42 42 Magnesium; via carbonyl oxygen. FT {ECO:0000256|HAMAP-Rule:MF_00011}. FT BINDING 123 123 IMP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT BINDING 137 137 IMP; shared with dimeric partner. FT {ECO:0000256|HAMAP-Rule:MF_00011}. FT BINDING 175 175 IMP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT BINDING 190 190 IMP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT BINDING 252 252 IMP. {ECO:0000256|HAMAP-Rule:MF_00011}. FT BINDING 254 254 GTP. {ECO:0000256|HAMAP-Rule:MF_00011}. SQ SEQUENCE 333 AA; 35804 MW; F501D146238AFCE5 CRC64; MTSTVVVGGF FGDEGKGKII SYLAIKDNPK VIVRGGAGPN AGHTIKDGDK VYKVRMLPSG FLNKDAKVMI GPGVVINPEV LQKEIDDFGV SGRAFIDKHC GVIEETHLAR DSKGELKEKI GSTGSGTGPA NADRAMRVLN LAKDFDSLSS IITDVPAEIN SAIDKNENVL IEGTQGTFLS LWHGTYPFVT SKDVTASGIC ADIGLGPTKV DEVIVVFKSY VTRVGTGPLD KELSLEEAEK KGWSEFGTVT GRQRRAADFD FDLARRAIML NGATQISITK LDVLFTDCAG KTSYDELFDD AKAFIKNIED ELNTPVTIIG TGPTVNDVID RRN // ID A9A4U0_NITMS Unreviewed; 127 AA. AC A9A4U0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13394.1}; GN OrderedLocusNames=Nmar_1498 {ECO:0000313|EMBL:ABX13394.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13394.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13394.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13394.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13394.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13394; ABX13394; Nmar_1498. DR KEGG; nmr:Nmar_1498; -. DR eggNOG; arCOG08677; Archaea. DR eggNOG; ENOG4110ZS4; LUCA. DR HOGENOM; HOG000106204; -. DR OMA; APRMESI; -. DR BioCyc; NMAR436308:GI3J-1538-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 127 AA; 14703 MW; 21ED54FDB5D2BD19 CRC64; MPKAGFKSIT VSETVYDKFQ EVYQKSKDDL AMKGVNSFSG YVTYMLEEMM QKDKTFARYA PKIEKISVDD DRIILKDNIK NRIAEVAVQK GELYCQLCDE KDCVHVGYVW SIPEVYEVLN ARGIRQK // ID A9A510_NITMS Unreviewed; 314 AA. AC A9A510; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11919.1}; GN OrderedLocusNames=Nmar_0019 {ECO:0000313|EMBL:ABX11919.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11919.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11919.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11919.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11919.1; -; Genomic_DNA. DR EnsemblBacteria; ABX11919; ABX11919; Nmar_0019. DR KEGG; nmr:Nmar_0019; -. DR eggNOG; arCOG02080; Archaea. DR eggNOG; COG1361; LUCA. DR HOGENOM; HOG000110453; -. DR OMA; TFMELTT; -. DR BioCyc; NMAR436308:GI3J-19-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 277 299 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 314 AA; 35210 MW; 832038A51DBFD186 CRC64; MNRFWIAPFL VGLFFMIPNI HGETLVQNLE GGMDIKITHP DEIVVGREGI ISILIKNNGW EEKQDISFEF SLSDVPGLIV EPNSVTIEKL TEGGSYGENV SLNITNDASP GIHFLNIKYS QILVSNNETP QDPFYHDIAI PITIKEDPNV TIHTKMPESI FANAEFPIEV EVISKDIDIT DVRIKIIPPK DIEFRGETMH SFSKIEKNTP VGITSRIITP TEEVNTEYKL PFEIIVQYTD DVGDEKEDSQ TVSVVLRPRT FMELTTDGGI WVGDFFIAPY VSLGTIIGIP AGAIISLLVR RKTSPKKRTR KKKV // ID A9A325_NITMS Unreviewed; 169 AA. AC A9A325; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:ABX12153.1}; GN OrderedLocusNames=Nmar_0257 {ECO:0000313|EMBL:ABX12153.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12153.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12153.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12153.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12153.1; -; Genomic_DNA. DR ProteinModelPortal; A9A325; -. DR STRING; 436308.Nmar_0257; -. DR EnsemblBacteria; ABX12153; ABX12153; Nmar_0257. DR KEGG; nmr:Nmar_0257; -. DR eggNOG; arCOG00002; Archaea. DR eggNOG; COG1695; LUCA. DR OMA; SEWFQRV; -. DR BioCyc; NMAR436308:GI3J-265-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR005149; Tscrpt_reg_PadR_N. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF03551; PadR; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 86 PadR. {ECO:0000259|Pfam:PF03551}. SQ SEQUENCE 169 AA; 19260 MW; 1D4022B6CB38961F CRC64; MISEWFQRVG SSVPRGFSRY FILELLKKKE QTGKEIIDYA VEQSNGIWKP SPGLIYPLLG RLLDEGLIQE TKDGKYQLTE KGAETAQDVD KVNDIVKKQL DVLFRLGNVG RFVAMDLLEK ISSMGAILSS NVANMTTEET EKYRKFLQEE LKKIDAKDVE KKGKEIKID // ID A9A1M1_NITMS Unreviewed; 455 AA. AC A9A1M1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13536.1}; GN OrderedLocusNames=Nmar_1640 {ECO:0000313|EMBL:ABX13536.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13536.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13536.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13536.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13536.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1640; -. DR EnsemblBacteria; ABX13536; ABX13536; Nmar_1640. DR KEGG; nmr:Nmar_1640; -. DR eggNOG; arCOG06854; Archaea. DR eggNOG; ENOG4111PRK; LUCA. DR OMA; EYAREEP; -. DR BioCyc; NMAR436308:GI3J-1685-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 313 332 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 455 AA; 52103 MW; DDF149E0D5D70AED CRC64; MAGIELSHNS LLFSKKIIGI FLLLPLIAVN PAFAESTEIQ MDWLIEGQLE KEHVTTQEAE IVSSYEELVV ENTESVKPIY DKFITGNNYS IGDYKITIDS EEGQILNGML IEQRDLRQES FKHKIKYYDR FSDGYVEIAE ALLDPIGDSR YLIKGQAFDY NPNSNLELFV LERGYSMDNL AAIPNDIFTP KEFTLGRQMM EDATFSGEGE FDLREYSPNY LLLTKEQIQE RMNDAFSEQT LQLFDGILSG EQLPPGKLPD TGIAVSAPTS EPENIFDNFK FEKPKFENTR HIRDSLQSNP FQVTAPTQSF ENISLLLIIP VFVALAVFGY LLRKKLSERK YEEPLLQVSK PQTDFRELTQ QMINKSQNLF DNNQRKEAFE TLSQAIRYYY SQNMEIYKEM TNQELLSVLD ESKSDAFGKV RGWLLLCGSV EYAKYDSSDA DFGDALSQFS KEVST // ID A9A4Z4_NITMS Unreviewed; 168 AA. AC A9A4Z4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11903.1}; GN OrderedLocusNames=Nmar_0003 {ECO:0000313|EMBL:ABX11903.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11903.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11903.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11903.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11903.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0003; -. DR EnsemblBacteria; ABX11903; ABX11903; Nmar_0003. DR KEGG; nmr:Nmar_0003; -. DR eggNOG; arCOG01995; Archaea. DR eggNOG; ENOG4111V8Y; LUCA. DR HOGENOM; HOG000110262; -. DR OMA; PFGIMEV; -. DR BioCyc; NMAR436308:GI3J-3-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR002798; SpoIIM-like. DR Pfam; PF01944; SpoIIM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 58 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 107 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 127 148 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 168 AA; 18316 MW; 258D7EDDF43E8E14 CRC64; MAIFTGTYQI GSMSTVSQEE ADIFMSEFEE LVLDIDGFGI FTHNTSLALP MFIPGFGVAW GLFSAWSTGF AFAAITTTAP ILEKVPPLAI LFLSPFGLME LTAYSLATSR SFILIRAITK KINLRTFIKP TVIEIGVVVG LLLAGGYLEF YMIEMAQEQG LQIPGIDI // ID A9A4M1_NITMS Unreviewed; 528 AA. AC A9A4M1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Excinuclease ABC, C subunit {ECO:0000313|EMBL:ABX12999.1}; GN OrderedLocusNames=Nmar_1103 {ECO:0000313|EMBL:ABX12999.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12999.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12999.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12999.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12999.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M1; -. DR STRING; 436308.Nmar_1103; -. DR EnsemblBacteria; ABX12999; ABX12999; Nmar_1103. DR KEGG; nmr:Nmar_1103; -. DR eggNOG; arCOG04753; Archaea. DR eggNOG; COG0322; LUCA. DR HOGENOM; HOG000279960; -. DR KO; K03703; -. DR OMA; GAINSYK; -. DR BioCyc; NMAR436308:GI3J-1134-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0009380; C:excinuclease repair complex; IEA:InterPro. DR GO; GO:0009381; F:excinuclease ABC activity; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR Gene3D; 3.40.1440.10; -; 1. DR Gene3D; 4.10.860.10; -; 1. DR InterPro; IPR027299; GIY-YIG_dom. DR InterPro; IPR000305; GIY-YIG_SF. DR InterPro; IPR001943; UVR_dom. DR InterPro; IPR004791; UvrC. DR InterPro; IPR001162; UvrC_homol_region. DR Pfam; PF01541; GIY-YIG; 1. DR Pfam; PF02151; UVR; 1. DR Pfam; PF08459; UvrC_HhH_N; 1. DR SMART; SM00465; GIYc; 1. DR SUPFAM; SSF46600; SSF46600; 1. DR SUPFAM; SSF82771; SSF82771; 1. DR TIGRFAMs; TIGR00194; uvrC; 1. DR PROSITE; PS50164; GIY_YIG; 1. DR PROSITE; PS50151; UVR; 1. DR PROSITE; PS50165; UVRC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 89 GIY-YIG. {ECO:0000259|PROSITE:PS50164}. FT DOMAIN 200 235 UVR. {ECO:0000259|PROSITE:PS50151}. FT DOMAIN 288 464 UVRC. {ECO:0000259|PROSITE:PS50165}. SQ SEQUENCE 528 AA; 60558 MW; 485F0D5E28689AAA CRC64; MTFDISKITI PTDPGIYLMK DSDGTIIYIG KAKNLKKRVK SYFLKNQNYK TQKLVQNISD IEFVLTDNES EAFLLESNMI KKYRPRFNIE LKDQQRYTYL RISDEKYPRL LVARRTRDGK FLGKGKTFGP FTQGSSKLLT IGALRKAFQI RICKTLPKKV CLEYHLGNCE GPCEFNDAQD RYPKHVAALE EVLKGKNQTK IFTKKLEEEM HQAAELQQFE RAKDIRDTLI RLGSLQTKQK MEYVENSDEE YFGIGIQEQS ATVMNFRMIN GVIRDSDKFF FDLVGDNSFS NFLYQYYSTH KIPKYIIVSE LPENQKLLES LLSEQAGFSV KISTPTKGKK KDIMNLILKN IKLIHSKGGE PGLVELKDIL HLPVIPNVIE CFDISNHGED FAVGSMAQFV NGKPNKSGYR KFKIKTVSGR DDFAMIGEVI KRRYYRLLEE NSELPDLIVI DGGKGQLNAA TKSLQSLGLK LPCISLAKEN EEIYLPKTKN PVTIAKNKPS LQILQHARDE THRFGVAYNR TIRKNQIK // ID A9A2T8_NITMS Unreviewed; 254 AA. AC A9A2T8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13615.1}; GN OrderedLocusNames=Nmar_1719 {ECO:0000313|EMBL:ABX13615.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13615.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13615.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13615.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13615.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1719; -. DR EnsemblBacteria; ABX13615; ABX13615; Nmar_1719. DR KEGG; nmr:Nmar_1719; -. DR eggNOG; arCOG04262; Archaea. DR eggNOG; COG1701; LUCA. DR HOGENOM; HOG000230027; -. DR KO; K09722; -. DR OMA; PKSHPRY; -. DR BioCyc; NMAR436308:GI3J-1764-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002855; PPS. DR Pfam; PF02006; DUF137; 1. DR PIRSF; PIRSF004853; UCP004853; 1. DR ProDom; PD016827; DUF137; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 254 AA; 27906 MW; 69BDCA624FB1D957 CRC64; MTLIPKSHPR AKSLLIREKL VSGFDNGLVA KEGLLAQGRG EAFDYLLGEK TNQAAKRAIK AAAAQLLQAQ KPVISVNGNV AALCPKEIIR LSKQIKAKLE VNLFYTNEKR KQAIIKTLKK NGVKEILGTN SANSTKLPGI DSARRIVDKD GIFAADVVVV PLEDGDRTMA LRNAGKTVIT FDLNPLSRTS QTANITIVDN VTRAIELLIS ESKKLTKRNE KSLEKIISDF DNKKNLTENV IQIKNNLTRR ARVA // ID A9A478_NITMS Unreviewed; 157 AA. AC A9A478; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12567.1}; GN OrderedLocusNames=Nmar_0671 {ECO:0000313|EMBL:ABX12567.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12567.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12567.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12567.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12567.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12567; ABX12567; Nmar_0671. DR KEGG; nmr:Nmar_0671; -. DR eggNOG; arCOG10533; Archaea. DR eggNOG; ENOG4111132; LUCA. DR BioCyc; NMAR436308:GI3J-696-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 157 AA; 19120 MW; E653FBCC75CA3FAC CRC64; MTDEIENSQK TMKEHSDKLA KLGMELSKIQ FSYKVEEKTS KEYWQKRIKN FEEYNKKALE YYNQVFSLMK IADKEESERF LLQISKFRQL SSSLIDIMQK IEENPTIINS KDRQQSQWSR EIKNNITDQS DKCLHHERDM NSYFRDFYEK HLKNILE // ID A9A433_NITMS Unreviewed; 202 AA. AC A9A433; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Beta-lactamase domain protein {ECO:0000313|EMBL:ABX12217.1}; GN OrderedLocusNames=Nmar_0321 {ECO:0000313|EMBL:ABX12217.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12217.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12217.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12217.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12217.1; -; Genomic_DNA. DR ProteinModelPortal; A9A433; -. DR STRING; 436308.Nmar_0321; -. DR EnsemblBacteria; ABX12217; ABX12217; Nmar_0321. DR KEGG; nmr:Nmar_0321; -. DR eggNOG; ENOG4102TGT; Archaea. DR eggNOG; ENOG4110GCR; LUCA. DR HOGENOM; HOG000058039; -. DR OMA; DTVFTEG; -. DR BioCyc; NMAR436308:GI3J-336-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.60.15.10; -; 1. DR InterPro; IPR001279; Metallo-B-lactamas. DR Pfam; PF00753; Lactamase_B; 1. DR SMART; SM00849; Lactamase_B; 1. DR SUPFAM; SSF56281; SSF56281; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 169 Lactamase_B. {ECO:0000259|SMART:SM00849}. SQ SEQUENCE 202 AA; 22772 MW; 9455CF5A6C084847 CRC64; MIVHQIQVGN MQNFSYIVVD EDTSESIIID PSWDLIELEM VIKENDLKIK YIVNTHHHFD HTIGNEAMAE STKAPIIQHE NSELKHDITV KDGDVIEFGN SKLKVLHTPG HSKDSICLIG DGKIFSGDTL FVGNCGRIDL PGGSAKELYH SLFDILYSLD DNLVLYSGHN YGHKEISTLG QEKITNMVMQ KRTEQQFLDM MG // ID A9A3I1_NITMS Unreviewed; 435 AA. AC A9A3I1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 51. DE SubName: Full=Aminotransferase class-III {ECO:0000313|EMBL:ABX12913.1}; GN OrderedLocusNames=Nmar_1017 {ECO:0000313|EMBL:ABX12913.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12913.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12913.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12913.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU003560}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12913.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3I1; -. DR STRING; 436308.Nmar_1017; -. DR EnsemblBacteria; ABX12913; ABX12913; Nmar_1017. DR KEGG; nmr:Nmar_1017; -. DR eggNOG; arCOG00918; Archaea. DR eggNOG; COG0001; LUCA. DR HOGENOM; HOG000020210; -. DR KO; K01845; -. DR OMA; GTEATMY; -. DR BioCyc; NMAR436308:GI3J-1048-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX12913.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU003560}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12913.1}. SQ SEQUENCE 435 AA; 47839 MW; 02EB16ADBB83082D CRC64; MNLLLDYIKE YKKKTKTSAK LFSKSAKLHV NGVSHNIRFY EPYPFVVKKS AGKNLVDVDS NKYTDYWMGH WALILGHGPN SVKKNLQKQI EKSWMYGTVN EQTIQLSELI SKAVPVAEKI RYVTSGTEAT MYAVRLARSV SGRKVIAKID GGWHGYTSDL LKSVNWPFSE SESSGVVNEE QIVSIPYNDL EKSLSILKKY SKDLAGVIIE PVLGGGGCIP ADSEYLKGVQ EFCKKNNSLF ILDEIVTGFR FRFGCLYPTM KLDPDIVTLG KIVGGGLSIG VMCGKKEIME AADTTGKKKS ERSYVGGGTF SANPASMVAG YSTLDYLKSK KTVYSKINDL GKFARKEIGK AFDGKVAVTG KGSLFMTHFL QNGISEIRNS ADAAKCNGGL LAKYHFKMIA HDGIFFLPGK LGAISNAHSK EDIKKIVKAS EEFTC // ID A9A1N0_NITMS Unreviewed; 275 AA. AC A9A1N0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13545.1}; GN OrderedLocusNames=Nmar_1649 {ECO:0000313|EMBL:ABX13545.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13545.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13545.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13545.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13545.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1649; -. DR EnsemblBacteria; ABX13545; ABX13545; Nmar_1649. DR KEGG; nmr:Nmar_1649; -. DR eggNOG; arCOG10597; Archaea. DR eggNOG; ENOG410Y4H9; LUCA. DR HOGENOM; HOG000110017; -. DR OMA; GPIPLTH; -. DR BioCyc; NMAR436308:GI3J-1694-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 243 267 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 275 AA; 30793 MW; 4A1A0B42EC12C0B6 CRC64; MKILFVLLLI PFLMVPAFAE TQTLPTEKNT LDVKLTYDTI EPGIQTKINI DFINPQTQKV QEHIDYTVVV SKDGETVFGP IPLTHTSLGS VKIPIEFNRG EGVYSMDFEV EGILFQPIPR ETVSFDIQVG EANAQPITPP EDNNDENNGE NGGCLIATAT FGSELAPQVQ QLRELRDNTV LKTNSGITFM TTFNQFYYSF SPVIADFERE QPLFKEVMKV TLTPMLSSLS LLNHADIDSE QEMLGYGISI VLLNLGMYVG IPIFGILKLY QFRKN // ID A9A3U6_NITMS Unreviewed; 621 AA. AC A9A3U6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13358.1}; GN OrderedLocusNames=Nmar_1462 {ECO:0000313|EMBL:ABX13358.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13358.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13358.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13358.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13358.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1462; -. DR EnsemblBacteria; ABX13358; ABX13358; Nmar_1462. DR KEGG; nmr:Nmar_1462; -. DR eggNOG; arCOG08777; Archaea. DR eggNOG; ENOG4110ZNH; LUCA. DR BioCyc; NMAR436308:GI3J-1499-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 621 AA; 69338 MW; B80B320089852217 CRC64; MKFFLVVIFS IIIITVSPAF AAISLDKSPY TWTDKINIRI TEHGVDSDGA SVRVYTEDHE IRNYKLAKAG NGLYTGEIIL TGFLHDVNGD GKYDTNPRTT GTGPNNGFLE SSRDDEFTIL VRFADGDEIK KSVKINWNVG TMDYTRMFNG YGESFLITVN DPDMNLNPDT LDTLSIQVFS DSDKAGLVID AKELHDSPGT FVAYFSTSQD DSSGRSLYAL PDDVIYVQYD DHTLPKPYSV NDDLAVSVEL HPFPFEQLDA KNIEWSQANY STKNGTSSAK IIVTDHEQNK FANSIDTVKA KILSDSSLEG ITIDLYETSK DSGVFERTFA FSDKRSGPNI LYGNQGDTMT ALYDPQQSID SKNFLTATTL LGSTGPPLER APVSAPRISD LKHNTIVYPV VGEQVLLTSD IANQQDREQR FVWIAQIIDS DKKTQALSWI DGTLNPLSSF SPATSWIPNV AGDYRVVFFV WQSIENPTAL SPPIEFDFTV LDEDPTRHHY EELTPDDLEA RQNMIEELRT VPGENSMDHL SDDARDFVIS EVLKNNKVSS ILDGYTYDVE CCSFSVDRKN PPLNQHVGLK FNVEEKYLFV TVTFDLKQEK ITAILKGSSD GFSIIPVDDK K // ID A9A5Y8_NITMS Unreviewed; 281 AA. AC A9A5Y8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=Dihydropteroate synthase {ECO:0000313|EMBL:ABX13466.1}; DE EC=2.5.1.15 {ECO:0000313|EMBL:ABX13466.1}; GN OrderedLocusNames=Nmar_1570 {ECO:0000313|EMBL:ABX13466.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13466.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13466.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13466.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13466.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y8; -. DR STRING; 436308.Nmar_1570; -. DR EnsemblBacteria; ABX13466; ABX13466; Nmar_1570. DR KEGG; nmr:Nmar_1570; -. DR eggNOG; arCOG02817; Archaea. DR eggNOG; COG0294; LUCA. DR HOGENOM; HOG000217509; -. DR KO; K00796; -. DR OMA; SIDTYHA; -. DR BioCyc; NMAR436308:GI3J-1614-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004156; F:dihydropteroate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0009396; P:folic acid-containing compound biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.20; -; 1. DR InterPro; IPR006390; DHP_synth. DR InterPro; IPR011005; Dihydropteroate_synth-like. DR InterPro; IPR000489; Pterin-binding_dom. DR Pfam; PF00809; Pterin_bind; 1. DR SUPFAM; SSF51717; SSF51717; 1. DR TIGRFAMs; TIGR01496; DHPS; 1. DR PROSITE; PS50972; PTERIN_BINDING; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13466.1}. FT DOMAIN 15 274 Pterin-binding. FT {ECO:0000259|PROSITE:PS50972}. SQ SEQUENCE 281 AA; 30768 MW; 4D06047786CB3412 CRC64; MTRIAKVGVG GKNPVRIMGI LNTSPESFYK KSIQTTKTQI KNSIKEMEND GVDFIDVGGM STAPYLSTMV SEKTESKRIL EAVKIIQDVS NIPISVDTCR AKPARDALEN GVEIINDISG LKYDEKMKDV ISDFSPSLIL CAFSSKTVTG NLMSTKKLLQ ESLKIAKKSH VPSEKIVLDP SIGFFRKKGN GPFFTKIKSD WVKRDLTIIQ NLNSIKGNYP VLISVSNKSF LGEILQKDPS DRLFGSIAAE AISVVNGADI IRTHNVNATK DAITIASNLK K // ID A9A3N0_NITMS Unreviewed; 291 AA. AC A9A3N0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13292.1}; GN OrderedLocusNames=Nmar_1396 {ECO:0000313|EMBL:ABX13292.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13292.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13292.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13292.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13292.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1396; -. DR EnsemblBacteria; ABX13292; ABX13292; Nmar_1396. DR KEGG; nmr:Nmar_1396; -. DR eggNOG; arCOG04153; Archaea. DR eggNOG; COG1522; LUCA. DR OMA; SIENSPC; -. DR BioCyc; NMAR436308:GI3J-1431-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 5 32 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 291 AA; 33368 MW; 597732C418BE51E0 CRC64; MAKKKEELVD EAKKIKAEID ALKKKTEILD SKPKKSTKKA EAKPTKKTTK KAEAKPTKKT TKKAEAKPTK KTTKKAEAKP TKKTTKKAEA KPTKKTTKKA EAKPTKKTTK KAEAKPTKKT TKKAEAKPEK PKKLTKKELE EQKRIEELTP EEELEEQLSD EEIENFQIEK VDMERLTNKV CDILAERESE GMFQSELWKK LKLTSRDGSR LSLKLERIGF ITREKMLEKN RWTYKLILKK TPISTQSIEN SPCLVCPVEQ KCSLEGEISP RNCQFIEDWV IAEMKKPAKA K // ID A9A5K9_NITMS Unreviewed; 75 AA. AC A9A5K9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12720.1}; GN OrderedLocusNames=Nmar_0824 {ECO:0000313|EMBL:ABX12720.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12720.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12720.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12720.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12720.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12720; ABX12720; Nmar_0824. DR KEGG; nmr:Nmar_0824; -. DR eggNOG; arCOG03748; Archaea. DR eggNOG; COG1846; LUCA. DR BioCyc; NMAR436308:GI3J-851-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 75 AA; 8751 MW; 13AC45DF1DC0EFA0 CRC64; MTPQTKDMQV LGIMHQGANT FDKIQRNLKI DSKELDSILQ QLEKRDLIKV IQKQGMFGPK IEIYSTDKGF KEYYS // ID A9A4L0_NITMS Unreviewed; 151 AA. AC A9A4L0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 42. DE SubName: Full=Endoribonuclease L-PSP {ECO:0000313|EMBL:ABX12988.1}; GN OrderedLocusNames=Nmar_1092 {ECO:0000313|EMBL:ABX12988.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12988.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12988.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12988.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12988.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4L0; -. DR STRING; 436308.Nmar_1092; -. DR EnsemblBacteria; ABX12988; ABX12988; Nmar_1092. DR KEGG; nmr:Nmar_1092; -. DR eggNOG; arCOG01630; Archaea. DR eggNOG; COG0251; LUCA. DR HOGENOM; HOG000267216; -. DR OMA; ARTCALN; -. DR BioCyc; NMAR436308:GI3J-1123-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.1330.40; -; 1. DR InterPro; IPR013813; Endoribo_LPSP/chorism_mut-like. DR InterPro; IPR006175; YjgF/YER057c/UK114. DR PANTHER; PTHR11803; PTHR11803; 1. DR Pfam; PF14588; YjgF_endoribonc; 1. DR SUPFAM; SSF55298; SSF55298; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 144 YjgF_endoribonc. FT {ECO:0000259|Pfam:PF14588}. SQ SEQUENCE 151 AA; 16103 MW; 34E74CFEF3C77FA2 CRC64; MSEAKLKELG IELPEAPIPA GNYIPAVKTG NLLFISGQIP LENGKVAYTG KVSDDNLETA QKSAKSCAIN ILAQIKREAG SLDKVTKIVR LSGFVNSVPE FTQHPKVINP ASDLMFEVFG EKGKHARIAL GAGSLPLDSM TEIDAIVELS E // ID A9A5P7_NITMS Unreviewed; 205 AA. AC A9A5P7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Cation efflux protein {ECO:0000313|EMBL:ABX13052.1}; GN OrderedLocusNames=Nmar_1156 {ECO:0000313|EMBL:ABX13052.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13052.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13052.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13052.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13052.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5P7; -. DR STRING; 436308.Nmar_1156; -. DR EnsemblBacteria; ABX13052; ABX13052; Nmar_1156. DR KEGG; nmr:Nmar_1156; -. DR eggNOG; arCOG01477; Archaea. DR eggNOG; COG1230; LUCA. DR HOGENOM; HOG000002625; -. DR OMA; IWLFSRN; -. DR BioCyc; NMAR436308:GI3J-1188-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR Gene3D; 1.20.1510.10; -; 1. DR InterPro; IPR002524; Cation_efflux. DR InterPro; IPR027469; Cation_efflux_TMD. DR PANTHER; PTHR11562; PTHR11562; 1. DR Pfam; PF01545; Cation_efflux; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 100 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 132 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 152 169 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 175 193 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 205 AA; 22031 MW; 626E48FB89564533 CRC64; MSDDDDLPKD LAHITPAYRR ALWIVVLLNV GYGLVEMIGG FFADSQALKA DALDFLGDGS ITFLGLLAIG WGLKLRARSA LIQGIFLGVM GIGVLAYTIY RTQVLQTPEA GLMGILGFGA LLINVIAVII LLPHRKGDAN VRAVWLFSRN DALGNILVIV GAGFVFLTDT SFPDLIVAGI IASLFLQSSW SIIKDARSDL KKSEV // ID A9A607_NITMS Unreviewed; 69 AA. AC A9A607; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13485.1}; GN OrderedLocusNames=Nmar_1589 {ECO:0000313|EMBL:ABX13485.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13485.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13485.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13485.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13485.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13485; ABX13485; Nmar_1589. DR KEGG; nmr:Nmar_1589; -. DR eggNOG; arCOG10591; Archaea. DR eggNOG; ENOG41110RC; LUCA. DR BioCyc; NMAR436308:GI3J-1633-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 69 AA; 7948 MW; 21FC93297EE81F47 CRC64; MNDDEKGKRF LELIDEQNNV QWSIVAKLSS LISSNWDSID VQKELEELVE KHTSITKELN SLDENSSIL // ID A9A2A2_NITMS Unreviewed; 227 AA. AC A9A2A2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12813.1}; GN OrderedLocusNames=Nmar_0917 {ECO:0000313|EMBL:ABX12813.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12813.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12813.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12813.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12813.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12813; ABX12813; Nmar_0917. DR KEGG; nmr:Nmar_0917; -. DR eggNOG; ENOG4102UA1; Archaea. DR eggNOG; ENOG4110ZJT; LUCA. DR BioCyc; NMAR436308:GI3J-945-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 67 86 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 227 AA; 26363 MW; C42D6B0D5C70CCE1 CRC64; MENTNPNYRA TLVILNDIEK NGLYHFNPKY HDEKFFLNFI GFQKGFSSSF SEVIRKLDDF DTKREDVIIF AVYSMMSFVN SHLAVFEKFL KIILDSTKLK GGFDEDTTLS QILKKVCNKM QYNPKLKNAI RGLFLADFAD ALAYNQYLIS KDGHLIIYPK DEEKKKQISI DELYDDSLQV RAIFNAMLDW SDTTDDPPKN KTDTLDDVVK NLINQVNSLD RKLDRIS // ID A9A3Y0_NITMS Unreviewed; 69 AA. AC A9A3Y0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13680.1}; GN OrderedLocusNames=Nmar_1784 {ECO:0000313|EMBL:ABX13680.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13680.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13680.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13680.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13680.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1784; -. DR EnsemblBacteria; ABX13680; ABX13680; Nmar_1784. DR KEGG; nmr:Nmar_1784; -. DR eggNOG; arCOG08810; Archaea. DR eggNOG; ENOG4111049; LUCA. DR HOGENOM; HOG000110362; -. DR OMA; ICHRISA; -. DR BioCyc; NMAR436308:GI3J-1832-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 69 AA; 7894 MW; 0794D1129688CD89 CRC64; MKICNICHKL SATGEDHIDC IQKRSIELEA EDFKNNIPEK LNLSKNDKDL GVEMKAVLEH LAREKENSD // ID A9A112_NITMS Unreviewed; 122 AA. AC A9A112; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11973.1}; GN OrderedLocusNames=Nmar_0073 {ECO:0000313|EMBL:ABX11973.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11973.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11973.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11973.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11973.1; -; Genomic_DNA. DR ProteinModelPortal; A9A112; -. DR STRING; 436308.Nmar_0073; -. DR EnsemblBacteria; ABX11973; ABX11973; Nmar_0073. DR KEGG; nmr:Nmar_0073; -. DR eggNOG; arCOG04312; Archaea. DR eggNOG; COG1412; LUCA. DR HOGENOM; HOG000110721; -. DR KO; K07158; -. DR OMA; VEIGTIS; -. DR BioCyc; NMAR436308:GI3J-74-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.1010; -; 1. DR InterPro; IPR029060; PIN_domain-like. DR SUPFAM; SSF88723; SSF88723; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 122 AA; 13753 MW; 4AA898C9E47988A2 CRC64; MVEVICDTSF LINLATRRIK NIDNLDVEIG TISFVVPEVV KTELSKLLKI PEKKYDIEKT LNFIKNFKTI PLSGSFADKE LLEFIKSNNS IIGTMDKELK KQIKSVGSSV LSFSNDKIIL ES // ID A9A1I1_NITMS Unreviewed; 52 AA. AC A9A1I1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE RecName: Full=50S ribosomal protein L39e {ECO:0000256|HAMAP-Rule:MF_00629}; GN Name=rpl39e {ECO:0000256|HAMAP-Rule:MF_00629}; GN OrderedLocusNames=Nmar_1264 {ECO:0000313|EMBL:ABX13160.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13160.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13160.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13160.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein L39e family. CC {ECO:0000256|HAMAP-Rule:MF_00629}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13160.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I1; -. DR STRING; 436308.Nmar_1264; -. DR EnsemblBacteria; ABX13160; ABX13160; Nmar_1264. DR KEGG; nmr:Nmar_1264; -. DR eggNOG; arCOG04177; Archaea. DR eggNOG; COG2167; LUCA. DR HOGENOM; HOG000230627; -. DR KO; K02924; -. DR OMA; RRAWRST; -. DR BioCyc; NMAR436308:GI3J-1297-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1620.10; -; 1. DR HAMAP; MF_00629; Ribosomal_L39e; 1. DR InterPro; IPR000077; Ribosomal_L39. DR InterPro; IPR023626; Ribosomal_L39e_dom. DR Pfam; PF00832; Ribosomal_L39; 1. DR SUPFAM; SSF48662; SSF48662; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00629, KW ECO:0000313|EMBL:ABX13160.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00629, KW ECO:0000313|EMBL:ABX13160.1}. SQ SEQUENCE 52 AA; 5999 MW; E22305A3357169E7 CRC64; MAARKSSPRK IRLLKKTKQA SPVPAWIILK TKRSVRTNPK RRAWRSTDVE VG // ID A9A5P4_NITMS Unreviewed; 233 AA. AC A9A5P4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=High-affinity nickel-transporter {ECO:0000313|EMBL:ABX13049.1}; GN OrderedLocusNames=Nmar_1153 {ECO:0000313|EMBL:ABX13049.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13049.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13049.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13049.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13049.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13049; ABX13049; Nmar_1153. DR KEGG; nmr:Nmar_1153; -. DR eggNOG; arCOG10578; Archaea. DR eggNOG; ENOG4111Z4X; LUCA. DR HOGENOM; HOG000236880; -. DR OMA; WGIGHTL; -. DR BioCyc; NMAR436308:GI3J-1185-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 79 100 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 138 160 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 166 195 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 207 227 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 233 AA; 25300 MW; 26AEBF147A783D1E CRC64; MGLGLVVGIQ HAFEPDHVAA VSTQISKSKY LQKSVGASLK ESLTKSSILG ALWGAGHTTT LVLIGFLVYV LAITIQDQIF FGFEFAVGLM LVFLGITTIV NKKIQLKHKH PHQHKDGTIH LDEHNHNDSD HRHAHKSYLI GLIHGLAGSG SLVVLTATTL ENIELVLSFI MIFGIGSMIG MTLVGGLMGI PLVFTSKIGM IQKTFRYVSG IFSLIIGFNI IFQIGILENL IAF // ID A9A2A9_NITMS Unreviewed; 190 AA. AC A9A2A9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ABX12820.1}; GN OrderedLocusNames=Nmar_0924 {ECO:0000313|EMBL:ABX12820.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12820.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12820.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12820.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the CDP-alcohol phosphatidyltransferase CC class-I family. {ECO:0000256|RuleBase:RU003750}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12820.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0924; -. DR EnsemblBacteria; ABX12820; ABX12820; Nmar_0924. DR KEGG; nmr:Nmar_0924; -. DR eggNOG; arCOG00670; Archaea. DR eggNOG; COG0558; LUCA. DR HOGENOM; HOG000224460; -. DR KO; K17884; -. DR OMA; RYSELFM; -. DR BioCyc; NMAR436308:GI3J-952-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016780; F:phosphotransferase activity, for other substituted phosphate groups; IEA:InterPro. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:InterPro. DR InterPro; IPR000462; CDP-OH_P_trans. DR Pfam; PF01066; CDP-OH_P_transf; 1. DR PROSITE; PS00379; CDP_ALCOHOL_P_TRANSF; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU003750, KW ECO:0000313|EMBL:ABX12820.1}; Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 51 69 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 150 178 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 190 AA; 20176 MW; E1B84C9F7403F81A CRC64; MLNNLRDSLK PTLEKIGKGF ASTGLSPNFW TAVGLGVAFL SAIVYGLGIE FGLIIGGILL LVSGFFDMVD GQVARVTGKT SQKGSYLDSM FDKIAETAIF LGILVGGYAE PYLVLLAITL SLLVSYARAK SDAINVKLQG VGIGERAERL LVIAIIGIIG FMEIAVIIVV IIAAITLIQR MIVTAKNIKE // ID A9A3X6_NITMS Unreviewed; 197 AA. AC A9A3X6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Dephospho-CoA kinase, CoaE {ECO:0000313|EMBL:ABX13676.1}; GN OrderedLocusNames=Nmar_1780 {ECO:0000313|EMBL:ABX13676.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13676.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13676.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13676.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13676.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X6; -. DR STRING; 436308.Nmar_1780; -. DR EnsemblBacteria; ABX13676; ABX13676; Nmar_1780. DR KEGG; nmr:Nmar_1780; -. DR eggNOG; arCOG01045; Archaea. DR eggNOG; COG0237; LUCA. DR HOGENOM; HOG000110408; -. DR OMA; IALADYM; -. DR BioCyc; NMAR436308:GI3J-1827-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13676.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13676.1}. SQ SEQUENCE 197 AA; 21753 MW; F2BD1926D8A2DD76 CRC64; MISGSFIDEF GFRYSMTKLI VCLTGMPGAG KSTIAEGLKP KGYDIVNMGN AVREEAKKRN LEPSRSNLGK LMLELREKNG PGAIAELIKP QIESSSSNVI LIDGVRSNDE IEVLRKIGNV KLLAIHASTD TRFDFLQKRG RSDDPQTKEH FEERDNRELG VGISNSIALS DYAISNIGLT KDELIESANE IIQSWVL // ID A9A2P4_NITMS Unreviewed; 127 AA. AC A9A2P4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13571.1}; GN OrderedLocusNames=Nmar_1675 {ECO:0000313|EMBL:ABX13571.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13571.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13571.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13571.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13571.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1675; -. DR EnsemblBacteria; ABX13571; ABX13571; Nmar_1675. DR KEGG; nmr:Nmar_1675; -. DR BioCyc; NMAR436308:GI3J-1720-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 42 64 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 94 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 106 124 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 127 AA; 14121 MW; 7F9CCF375867F4B4 CRC64; MQVSTLDNKS KFKLLGILVL IGLVILIPLT SENFTDENKV HIFIHISSAL LGLFLSIVAL ITYSEFKTTR LFLVLCAFAT ITTVELFSIV SFILSHTPPT PDVDTLITHG LIFTMLSFFV IGIFRSD // ID A9A5J3_NITMS Unreviewed; 271 AA. AC A9A5J3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; GN Name=rpl4 {ECO:0000256|HAMAP-Rule:MF_01328}; GN OrderedLocusNames=Nmar_0808 {ECO:0000313|EMBL:ABX12704.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12704.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12704.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12704.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Forms part of the polypeptide exit tunnel. CC {ECO:0000256|HAMAP-Rule:MF_01328}. CC -!- FUNCTION: One of the primary rRNA binding proteins, this protein CC initially binds near the 5'-end of the 23S rRNA. It is important CC during the early stages of 50S assembly. It makes multiple CC contacts with different domains of the 23S rRNA in the assembled CC 50S subunit and ribosome. {ECO:0000256|HAMAP-Rule:MF_01328}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01328}. CC -!- SIMILARITY: Belongs to the ribosomal protein L4P family. CC {ECO:0000256|HAMAP-Rule:MF_01328}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12704.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5J3; -. DR STRING; 436308.Nmar_0808; -. DR EnsemblBacteria; ABX12704; ABX12704; Nmar_0808. DR KEGG; nmr:Nmar_0808; -. DR eggNOG; arCOG04071; Archaea. DR eggNOG; COG0088; LUCA. DR HOGENOM; HOG000107332; -. DR KO; K02930; -. DR OMA; KNYHERI; -. DR BioCyc; NMAR436308:GI3J-835-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.1370.10; -; 1. DR HAMAP; MF_01328_A; Ribosomal_L4_A; 1. DR InterPro; IPR002136; Ribosomal_L4/L1e. DR InterPro; IPR013000; Ribosomal_L4/L1e_euk/arc_CS. DR InterPro; IPR023574; Ribosomal_L4_dom. DR InterPro; IPR019970; Ribosomall_L4. DR Pfam; PF00573; Ribosomal_L4; 1. DR SUPFAM; SSF52166; SSF52166; 1. DR TIGRFAMs; TIGR03672; rpl4p_arch; 1. DR PROSITE; PS00939; RIBOSOMAL_L1E; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01328, KW ECO:0000313|EMBL:ABX12704.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01328, KW ECO:0000313|EMBL:ABX12704.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01328}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01328}. SQ SEQUENCE 271 AA; 28992 MW; BA2677BFA6CB14B0 CRC64; MTKTAVYTTT GTKDGEVELP AVFSTPFRRE LIHKAFTNLT SHKFQPQGRH PTAGQDVVAD SNDPPTGQGV SRVARAQGGG GGRQGQGAEV ASTRGGRQAH PPIVEKVIYK KLNKKEKKLA LCSAIAATAS KDRVESRGHK VEGIESFPIV VSDDIESVSK TSEVSKILDS LKLTQDVQRL ETRKARSGQS RLRGRSKKVG KSVLFVTKDA SNISKAIGAL PGVEATSVKD LSVLDLAPGS DPIRLTVYSK SAIEEIGKIK STHLEVMAKV Q // ID A9A2L0_NITMS Unreviewed; 180 AA. AC A9A2L0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13249.1}; GN OrderedLocusNames=Nmar_1353 {ECO:0000313|EMBL:ABX13249.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13249.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13249.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13249.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13249.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2L0; -. DR STRING; 436308.Nmar_1353; -. DR EnsemblBacteria; ABX13249; ABX13249; Nmar_1353. DR KEGG; nmr:Nmar_1353; -. DR eggNOG; arCOG01471; Archaea. DR eggNOG; COG3945; LUCA. DR HOGENOM; HOG000110475; -. DR BioCyc; NMAR436308:GI3J-1387-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR012312; Haemerythrin-like. DR Pfam; PF01814; Hemerythrin; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 130 Hemerythrin. {ECO:0000259|Pfam:PF01814}. SQ SEQUENCE 180 AA; 21412 MW; 6001049D65E49716 CRC64; MSATDELRAD HIQVRRLEKI VFKCAEELKN GEDIPFSDLT KITIVISEFV DTIHHSREED SYFPCVASHD SLKDEIHKFL VEHEFGRNVA KKIHHHLKRW KAGEDARESV SRYLKTYAVF LNDHLNKENK FFDDAEEKVL SEQEEIDMYE QYRSIFAVVK KVEDMIKEID YLESCPWYQK // ID A9A336_NITMS Unreviewed; 266 AA. AC A9A336; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 44. DE SubName: Full=Inositol-phosphate phosphatase {ECO:0000313|EMBL:ABX12164.1}; DE EC=3.1.3.25 {ECO:0000313|EMBL:ABX12164.1}; GN OrderedLocusNames=Nmar_0268 {ECO:0000313|EMBL:ABX12164.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12164.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12164.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12164.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12164.1; -; Genomic_DNA. DR ProteinModelPortal; A9A336; -. DR STRING; 436308.Nmar_0268; -. DR EnsemblBacteria; ABX12164; ABX12164; Nmar_0268. DR KEGG; nmr:Nmar_0268; -. DR eggNOG; arCOG01349; Archaea. DR eggNOG; COG0483; LUCA. DR HOGENOM; HOG000109583; -. DR KO; K01092; -. DR OMA; CTTCLET; -. DR BioCyc; NMAR436308:GI3J-278-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008934; F:inositol monophosphate 1-phosphatase activity; IEA:UniProtKB-EC. DR GO; GO:0052832; F:inositol monophosphate 3-phosphatase activity; IEA:UniProtKB-EC. DR GO; GO:0052833; F:inositol monophosphate 4-phosphatase activity; IEA:UniProtKB-EC. DR GO; GO:0046854; P:phosphatidylinositol phosphorylation; IEA:InterPro. DR InterPro; IPR000760; Inositol_monophosphatase. DR PANTHER; PTHR20854; PTHR20854; 1. DR Pfam; PF00459; Inositol_P; 1. DR PRINTS; PR00377; IMPHPHTASES. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12164.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 266 AA; 29389 MW; C6A1596028052104 CRC64; MEVIEILREV SNKIYENVKD LAGTEHAAGD FGRGAGGDIS RNIDIIAEKT VLDFLKEINF PCVVLGEECG RVELSKEPKG YVIMDAIDGS ANAVRGVPFF CSSLAFATEN KLSSITDGVI TNLHNGEMYW ASKDKGSYFN QEQMKVHNKD PIYKIVGINT SGASTELMKK LHPIFENHNH TRHFGANALE MALFARGLMD IFIDLRDKIR IQDIAAGYLI VKEAGGLLLD ANLNPLDADL SYDTRVSFIA AANQKILDEI MSQMNE // ID A9A2P7_NITMS Unreviewed; 336 AA. AC A9A2P7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13574.1}; GN OrderedLocusNames=Nmar_1678 {ECO:0000313|EMBL:ABX13574.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13574.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13574.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13574.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13574.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2P7; -. DR STRING; 436308.Nmar_1678; -. DR EnsemblBacteria; ABX13574; ABX13574; Nmar_1678. DR KEGG; nmr:Nmar_1678; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-1723-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 296 318 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 48 136 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 336 AA; 38447 MW; 28BFE8CC700B454B CRC64; MQKKFFILFV VATSFLFTGN IQNSFAEDFV VSIPFGAFNP ELNTPAKVWY DPPELSIVEG DTVTWVNDDR EGHTVTSGSG AGRFDWMDAK NLGEPDGLFD SLRFMPDESW SYTFEKAGDY NYFCVIHPWM EGIIFVKPFI PDYPHDATGK KYEQFPTFLI TPDGSIEINF SWEPRVIKTH EKTNFIYRFY DAIYDQPLRK LEYDIAILQN NQVLYKDEGA VSGAGGDYRQ WIFEEPGPII VKISNIKPYG SVAETQINLG PDATARLGDF TAMVYENYEK KTTTEKIVQP RDTLQFYYEI AVAMIIVPAI MLAVIVLYMK GKKPTYNYPE RKASPV // ID A9A391_NITMS Unreviewed; 302 AA. AC A9A391; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; DE Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383}; GN Name=tfb {ECO:0000256|HAMAP-Rule:MF_00383}; GN OrderedLocusNames=Nmar_0624 {ECO:0000313|EMBL:ABX12520.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12520.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12520.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12520.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Stabilizes TBP binding to an archaeal box-A promoter. CC Also responsible for recruiting RNA polymerase II to the pre- CC initiation complex (DNA-TBP-TFIIB). {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00383}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00383}; CC -!- SIMILARITY: Belongs to the TFIIB family. {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC -!- SIMILARITY: Contains 1 TFIIB-type zinc finger. {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12520.1; -; Genomic_DNA. DR ProteinModelPortal; A9A391; -. DR STRING; 436308.Nmar_0624; -. DR EnsemblBacteria; ABX12520; ABX12520; Nmar_0624. DR KEGG; nmr:Nmar_0624; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; NDERSNE; -. DR BioCyc; NMAR436308:GI3J-648-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.472.10; -; 2. DR HAMAP; MF_00383; TF2B_arch; 1. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR023484; TFIIB_arc. DR InterPro; IPR023486; TFIIB_CS. DR InterPro; IPR013150; TFIIB_cyclin. DR InterPro; IPR013137; Znf_TFIIB. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF08271; TF_Zn_Ribbon; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SMART; SM00385; CYCLIN; 2. DR SUPFAM; SSF47954; SSF47954; 2. DR PROSITE; PS00782; TFIIB; 2. DR PROSITE; PS51134; ZF_TFIIB; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00383}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repeat {ECO:0000256|HAMAP-Rule:MF_00383}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00383}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00383}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00383}; KW Zinc-finger {ECO:0000256|HAMAP-Rule:MF_00383}. FT DOMAIN 7 38 TFIIB-type. FT {ECO:0000259|PROSITE:PS51134}. FT REPEAT 123 206 1. {ECO:0000256|HAMAP-Rule:MF_00383}. FT REPEAT 217 298 2. {ECO:0000256|HAMAP-Rule:MF_00383}. FT ZN_FING 7 38 TFIIB-type. {ECO:0000256|HAMAP- FT Rule:MF_00383}. FT METAL 11 11 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 14 14 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 30 30 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 33 33 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. SQ SEQUENCE 302 AA; 33148 MW; 1EC703090392FD51 CRC64; MVKGENQKYK CPRCGKGTLV TDPNTGENFC GACGFVITEK VEESGPEWRS FSNEGENKSR AGVPTSLAMH DMGLATVINP QNRDATGKPL TASMKSTIER LRTWDSRSQV HEPVDRNFRQ AFSELDRLKD KLAVGDAVIE KAAYIYRKAL EKGLVRGRSI SALIASALYA ACRDTETPRT LKDIGQASNI KRKDIARCYR LLLRELNLKM PVVDPIKCIS RIASKAGLSE KTKRKATKIL QTAEENKISA GKDPMGLAAA ALYVACVTNG ENKTQRDVAE AAGVTEVTIR NRYKGLKVAL NL // ID A9A4I3_NITMS Unreviewed; 172 AA. AC A9A4I3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Transcription elongation factor NusA {ECO:0000313|EMBL:ABX12961.1}; GN OrderedLocusNames=Nmar_1065 {ECO:0000313|EMBL:ABX12961.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12961.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12961.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12961.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12961.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1065; -. DR EnsemblBacteria; ABX12961; ABX12961; Nmar_1065. DR KEGG; nmr:Nmar_1065; -. DR eggNOG; arCOG01761; Archaea. DR eggNOG; COG0195; LUCA. DR OMA; WFVESES; -. DR BioCyc; NMAR436308:GI3J-1096-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Elongation factor {ECO:0000313|EMBL:ABX12961.1}; KW Protein biosynthesis {ECO:0000313|EMBL:ABX12961.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 172 AA; 19561 MW; 0601132ECD8E7CF7 CRC64; MKLPICGFDA KNAILCPQCE SKVESGEITQ ADVDASIVLA KIAKSNNEIE NFTLYSCKEF QGNFVLSLAK NDIMIIRQSR TLYRLLQDQF KGKIWLVEAD ETDKRFIEDL FFPTKVLSIN SVWAPGGVQK TKAVISGKWT PRFPIDTEKV VEIVRNARNL DIEIEFEDKG RK // ID A9A4U1_NITMS Unreviewed; 280 AA. AC A9A4U1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 56. DE SubName: Full=DNA adenine methylase {ECO:0000313|EMBL:ABX13395.1}; DE EC=2.1.1.72 {ECO:0000313|EMBL:ABX13395.1}; GN OrderedLocusNames=Nmar_1499 {ECO:0000313|EMBL:ABX13395.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13395.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13395.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13395.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13395.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4U1; -. DR REBASE; 16737; M.NmaSCMORF1499P. DR EnsemblBacteria; ABX13395; ABX13395; Nmar_1499. DR KEGG; nmr:Nmar_1499; -. DR eggNOG; arCOG03416; Archaea. DR eggNOG; COG0338; LUCA. DR HOGENOM; HOG000281350; -. DR KO; K06223; -. DR OMA; MNRHGFN; -. DR BioCyc; NMAR436308:GI3J-1541-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0009007; F:site-specific DNA-methyltransferase (adenine-specific) activity; IEA:UniProtKB-EC. DR Gene3D; 1.10.1020.10; -; 1. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR023095; Ade_MeTrfase_dom_2. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR012263; M_m6A_EcoRV. DR InterPro; IPR012327; MeTrfase_D12. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02086; MethyltransfD12; 1. DR PIRSF; PIRSF000398; M_m6A_EcoRV; 1. DR PRINTS; PR00505; D12N6MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00571; dam; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13395.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13395.1}. SQ SEQUENCE 280 AA; 31926 MW; B24CFE1FA4C0A3B4 CRC64; MSTVTPKPFV KWAGGKRQLI PILNENLPKT FGTYYEPFIG GGALLFHILT ERNNQKCSIS DLNSDLVLAY TTIRNRIDDL ISSLKNHEKN YHKDSKSYYY SVRESNPRSE IEKTSRLLFL NRTCFNGLYR VNSKGKFNVP LGRYTNPNIV NEENLRSVSA ILQSSKVSIK CRDFGAVLRD AKKGDLVYFD PPYQPVSDTA NFTSYTNKDF TDKDLERLAD LCNKLDSKGC KVLLSNSDSK QVSDMFSGKS WKVNKVQANR SINSNSKKRT GHFELLIKNY // ID A9A470_NITMS Unreviewed; 149 AA. AC A9A470; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABX12254.1}; GN OrderedLocusNames=Nmar_0358 {ECO:0000313|EMBL:ABX12254.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12254.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12254.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12254.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12254.1; -; Genomic_DNA. DR ProteinModelPortal; A9A470; -. DR STRING; 436308.Nmar_0358; -. DR EnsemblBacteria; ABX12254; ABX12254; Nmar_0358. DR KEGG; nmr:Nmar_0358; -. DR eggNOG; arCOG00826; Archaea. DR eggNOG; COG0454; LUCA. DR OMA; RASERDC; -. DR BioCyc; NMAR436308:GI3J-374-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008080; F:N-acetyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR000182; GNAT_dom. DR Pfam; PF00583; Acetyltransf_1; 1. DR SUPFAM; SSF55729; SSF55729; 1. DR PROSITE; PS51186; GNAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12254.1}. FT DOMAIN 4 149 N-acetyltransferase. FT {ECO:0000259|PROSITE:PS51186}. SQ SEQUENCE 149 AA; 17231 MW; 8EC3AB17F32E862F CRC64; MTNVTIREAT DKDIPIILGL LYELGRPKPQ QDSDVDSFRK LVKTYIQESD KKLLVAILDD MKIVGMISMM LLPRLNRDTL EMYVPELIVL EKYQGKGIGK KLINSCITFA IEKKCHRIRL ESGNQRKESH KFYKHLGFEQ SSLSFTKNL // ID A9A5V3_NITMS Unreviewed; 415 AA. AC A9A5V3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Metallophosphoesterase {ECO:0000313|EMBL:ABX13108.1}; GN OrderedLocusNames=Nmar_1212 {ECO:0000313|EMBL:ABX13108.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13108.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13108.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13108.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13108.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5V3; -. DR STRING; 436308.Nmar_1212; -. DR EnsemblBacteria; ABX13108; ABX13108; Nmar_1212. DR KEGG; nmr:Nmar_1212; -. DR eggNOG; arCOG00397; Archaea. DR eggNOG; COG0420; LUCA. DR HOGENOM; HOG000107613; -. DR OMA; FLFHSAI; -. DR BioCyc; NMAR436308:GI3J-1245-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.60.21.10; -; 1. DR InterPro; IPR004843; Calcineurin-like_PHP_apaH. DR InterPro; IPR029052; Metallo-depent_PP-like. DR Pfam; PF00149; Metallophos; 1. DR SUPFAM; SSF56300; SSF56300; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 199 Metallophos. {ECO:0000259|Pfam:PF00149}. SQ SEQUENCE 415 AA; 47746 MW; 9DA40D9C168F167E CRC64; MYKFAHVSDI HLGFQDKKEL QKIEQEVFEE VVCTCIKQKV DFVLITGDLF HRNLPEMRVQ RFAFKNFKKL YDAKIPIYVV YGSHDFSPIE YSVIDLLTDV GYLTKVSKEH TNNEKTELDF TEDPKTKVKL VGISGRTAGI DKENYENLEL PVLDNSFKIF LFHIGIDELN SSSEIDTNSI PIESLPKGFD YYAGGHVHVF SHKQVKNLGE ICYPGTPFAG YHSDLEENAK QVKRGFVIVE FDNKIKNVKF CEIKKTDYEL LEFNANGKTA NALNIEILKK ISQIIPENKI ILLKVQGELK SGKTTEVNFI EFKEKLLQSG AREVNVNRIN LFSKKYHIEK IEAGKKEELE NKIFEENIKK IKTEQPELSG EKGILFAKEL LQFLKEPINT NEKKIDYQKR ISAAVLAMMG IEMEK // ID A9A2P0_NITMS Unreviewed; 108 AA. AC A9A2P0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=RNA polymerase Rpb4 {ECO:0000313|EMBL:ABX13279.1}; GN OrderedLocusNames=Nmar_1383 {ECO:0000313|EMBL:ABX13279.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13279.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13279.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13279.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13279.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2P0; -. DR STRING; 436308.Nmar_1383; -. DR EnsemblBacteria; ABX13279; ABX13279; Nmar_1383. DR KEGG; nmr:Nmar_1383; -. DR eggNOG; arCOG01016; Archaea. DR eggNOG; COG1460; LUCA. DR HOGENOM; HOG000106439; -. DR KO; K03051; -. DR OMA; GWKKLIL; -. DR BioCyc; NMAR436308:GI3J-1418-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.150.80; -; 1. DR InterPro; IPR010997; HRDC-like. DR InterPro; IPR002121; HRDC_dom. DR InterPro; IPR005574; RNA_pol_II_Rpb4. DR InterPro; IPR010924; RNAP_F. DR Pfam; PF03874; RNA_pol_Rpb4; 1. DR PIRSF; PIRSF005053; RNA_pol_F_arch; 1. DR SUPFAM; SSF47819; SSF47819; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 108 AA; 12677 MW; B46129C792D6FFAE CRC64; MEEVQKKQAI SLSEVKEILG KVDPEEMDQI QRWTYDYVSK FVSLDPKDAK EMKKKLIKEC ELTEDEAVEI VNIRPTSMAE LRSFTFGWKK LILAETLEKM LKIIKEHS // ID A9A114_NITMS Unreviewed; 712 AA. AC A9A114; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Dolichyl-diphosphooligosaccharide--protein glycotransferase {ECO:0000313|EMBL:ABX11975.1}; DE EC=2.4.99.18 {ECO:0000313|EMBL:ABX11975.1}; GN OrderedLocusNames=Nmar_0075 {ECO:0000313|EMBL:ABX11975.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11975.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11975.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11975.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11975.1; -; Genomic_DNA. DR ProteinModelPortal; A9A114; -. DR STRING; 436308.Nmar_0075; -. DR CAZy; GT66; Glycosyltransferase Family 66. DR EnsemblBacteria; ABX11975; ABX11975; Nmar_0075. DR KEGG; nmr:Nmar_0075; -. DR eggNOG; arCOG02044; Archaea. DR eggNOG; COG1287; LUCA. DR HOGENOM; HOG000110732; -. DR KO; K07151; -. DR OMA; WMIRIGN; -. DR BioCyc; NMAR436308:GI3J-76-MONOMER; -. DR BRENDA; 2.4.99.18; 10773. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004576; F:oligosaccharyl transferase activity; IEA:InterPro. DR GO; GO:0006486; P:protein glycosylation; IEA:InterPro. DR InterPro; IPR003674; Oligo_trans_STT3. DR Pfam; PF02516; STT3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosyltransferase {ECO:0000313|EMBL:ABX11975.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11975.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 111 134 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 158 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 170 186 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 226 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 238 257 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 263 286 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 298 316 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 360 379 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 391 410 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 416 436 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 448 470 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 712 AA; 79571 MW; 2A6D6E06E9435B5D CRC64; MNSDSTLISV GQFDLKLNHL LVIGILSLSF SISFLVRAQP AEWGWELHEF DPFFNYRATE YLVNNGVDAY FEWNDELSWY PWGRDVSESS QVALHLTAAV TYWMFGGGGN LYDFTILFPA IFGSLTTIVI FALVRVIGGT TAGLLSALLF SVSIPMLTRG AIGWFKSEPL GLFFAILSMY LLLSGINSKN QKIVIPKLVF SGFFIIMSLS AWGGNQFFII PLAIFFLTLP FLRKDHKFLI WAIPIFSLST IITSLGFERI TSNFLIGLGG FALFVPTIFL VLCIIIQNKS NDKHKMRNGL IFLASFLIII SAFLLINTSE EFIPLPSHRY LNAINPFLTT DNALTDSVSE HATPTIHHSF LFHSVIMVFA GIGIWLMLSN SKNHFVIRND MKSFSLLVGI TGVYAASTFL RLEVFASVSV IILASLGISF LSKSLFSNKM KFSNLKNLVL TLSFGIGLIT LLVIPITFVA PLNVFQVGDN PFTILNGGTT FGLANNDWND SLEWIKNNTP ENSVVAAWWD YGYWIQTKAE RTTLADNSTL IDHVIEKIAK VFLSTPEQGW KTLQEMEADY IVIFIAGQRL NLDGNENQPV YILSGGGDES KKQWFMSIAG EPLEKYLQSD GISGTDHFWN NTTLGKMIPF ELLGYVNFET NQQSLSYQPG FTAIYEKNIK FSMDDNGPLK LVYSSPSYDT PRGGALTGIF VYEINKDYIP TN // ID A9A2L9_NITMS Unreviewed; 113 AA. AC A9A2L9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13258.1}; GN OrderedLocusNames=Nmar_1362 {ECO:0000313|EMBL:ABX13258.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13258.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13258.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13258.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13258.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1362; -. DR EnsemblBacteria; ABX13258; ABX13258; Nmar_1362. DR KEGG; nmr:Nmar_1362; -. DR eggNOG; arCOG03067; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000108357; -. DR BioCyc; NMAR436308:GI3J-1396-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 113 AA; 12847 MW; 5B6FF42709EA538B CRC64; MAKKITPLLV EKYDISHKIF SELANLESRH ILFAIIKKPK RAQDISKETK IPLSSVYNRI SSLKECSLMY EKSDFADNGH VVTLYQSLIK DAEINVAKLE PTIALTKNQS VKK // ID A9A394_NITMS Unreviewed; 458 AA. AC A9A394; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12523.1}; GN OrderedLocusNames=Nmar_0627 {ECO:0000313|EMBL:ABX12523.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12523.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12523.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12523.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12523.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0627; -. DR EnsemblBacteria; ABX12523; ABX12523; Nmar_0627. DR KEGG; nmr:Nmar_0627; -. DR eggNOG; arCOG08742; Archaea. DR eggNOG; ENOG4110ZS1; LUCA. DR HOGENOM; HOG000108235; -. DR OMA; WHFLFDP; -. DR BioCyc; NMAR436308:GI3J-651-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 318 337 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 458 AA; 49358 MW; 94DF8F5CC32E92E8 CRC64; MSRAVVLTVL LAGLIVVGST GSVFGAQMDA RINPNNETSP FKMNYQKTVF IEYPNGGQLF DVLQGQEWSV IGEADISDPG VKSLMTQLNN KIKADGSQAQ ITDLNVSYDI HLKARNINTS VDYRVIIEGT LSNYVITQDS LKTLIDLGWR GLTATDEVVI DGHELNFPIN ILLEMEPEAA AFFVGTEAEE VLHRNLIDAD FILEQPLTNW HFLFDPTGIN VDAGTFGLSD EIAGYVVSSW TMGESSLREG RQVERVYEAE VMADQLYIVR SVQSSDQGNL YAIGFGALDI FDGVEIAGVT PTPPEDYATT STGDFPVMII YGMAAIAGIA GGAFFMFSNR ALKNEKTGQQ GIDPNRLVGY QTSVSSGGYQ TNRGEAQLAD GSDYQQTRSM YDDSSNSTQS PPPQPEATPT AAEEAACGCA ASAEMGSECD CAMQGACLCD ATCPCNADIC KENAREMS // ID A9A2B3_NITMS Unreviewed; 354 AA. AC A9A2B3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Deoxyhypusine synthase {ECO:0000313|EMBL:ABX12824.1}; GN OrderedLocusNames=Nmar_0928 {ECO:0000313|EMBL:ABX12824.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12824.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12824.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12824.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12824.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2B3; -. DR STRING; 436308.Nmar_0928; -. DR EnsemblBacteria; ABX12824; ABX12824; Nmar_0928. DR KEGG; nmr:Nmar_0928; -. DR eggNOG; arCOG04142; Archaea. DR eggNOG; COG1899; LUCA. DR HOGENOM; HOG000228839; -. DR KO; K00809; -. DR OMA; ANVYHED; -. DR BioCyc; NMAR436308:GI3J-956-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008612; P:peptidyl-lysine modification to peptidyl-hypusine; IEA:InterPro. DR Gene3D; 3.40.910.10; -; 1. DR InterPro; IPR002773; Deoxyhypusine_synthase. DR InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom. DR PANTHER; PTHR11703; PTHR11703; 1. DR Pfam; PF01916; DS; 1. DR SUPFAM; SSF52467; SSF52467; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 354 AA; 39806 MW; 7090B33DB06D171C CRC64; MDHHNFHGKN IPHIELKPNM KIEDVVEVFA QSGYNGRQLG EAAKLYAKMI DDGATICLTI AGAMTPVGFG GIFKTLIERG FVDWIITTGA NVYHEDHFAH KLPVKQGHFD VDDMVLYEKG IVRIRDVYID FEKTMKAEDK IMQNMFKEKF IDKSFTSAEL CNFIGKITKE KAKNPEKSFL ASAYKYDVPV YISTIGDSSI AMNLAVHRLR GKEYNFDFVK ELLEQAAILY NSKKSGILEL GGGVPKNTAQ QTGPTLDQIL DREDGGQDYI IQITDARPDT GGLSGATLQE GKSWGKVQDA HEDVVTVYAD ATIAFPILAL YAISTQKKRK PKRIFKDLDK FYKKLQSDYL NNKK // ID A9A559_NITMS Unreviewed; 180 AA. AC A9A559; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Glutamine amidotransferase class-I {ECO:0000313|EMBL:ABX11968.1}; GN OrderedLocusNames=Nmar_0068 {ECO:0000313|EMBL:ABX11968.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11968.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11968.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11968.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11968.1; -; Genomic_DNA. DR ProteinModelPortal; A9A559; -. DR STRING; 436308.Nmar_0068; -. DR EnsemblBacteria; ABX11968; ABX11968; Nmar_0068. DR KEGG; nmr:Nmar_0068; -. DR eggNOG; arCOG00087; Archaea. DR eggNOG; COG0518; LUCA. DR HOGENOM; HOG000110687; -. DR KO; K01951; -. DR OMA; ICYGAEI; -. DR BioCyc; NMAR436308:GI3J-68-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.880; -; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR Pfam; PF00117; GATase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000313|EMBL:ABX11968.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11968.1}. FT DOMAIN 1 180 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. SQ SEQUENCE 180 AA; 20379 MW; F467FD2AE3E812E7 CRC64; MLLIVDNGSI YTKNLTDFLT RKNIPFETKT PFTIDINSLS NYDSFILSGR RKNEKKINEI NSKIVNYSMQ NNSKLLGICY GAEILALTLG GTIKKSSSFQ KGNETVKIFE NDLTNNDSLL VFESHNFEIS KLPKELVSIG ESSNCKYEII KHVNKPIFGT QFHPEMSLDG NNLIEQFCLL // ID A9A438_NITMS Unreviewed; 102 AA. AC A9A438; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12222.1}; GN OrderedLocusNames=Nmar_0326 {ECO:0000313|EMBL:ABX12222.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12222.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12222.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12222.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12222.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12222; ABX12222; Nmar_0326. DR KEGG; nmr:Nmar_0326; -. DR eggNOG; arCOG08780; Archaea. DR eggNOG; ENOG411117N; LUCA. DR HOGENOM; HOG000109447; -. DR OMA; KMDSYLN; -. DR BioCyc; NMAR436308:GI3J-341-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 102 AA; 11323 MW; E40C675C1D651AC0 CRC64; MADTFDREKV VDCMFDPVTS SILAELEDGE KTCSSLAQQA SISESEVLER LSYLIEHEFI IKNTDGETTL SANSEKLSSI VESGDNFDET ISSLEKMDSY LN // ID A9A4C9_NITMS Unreviewed; 90 AA. AC A9A4C9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE SubName: Full=Arsenate reductase and related {ECO:0000313|EMBL:ABX12618.1}; GN OrderedLocusNames=Nmar_0722 {ECO:0000313|EMBL:ABX12618.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12618.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12618.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12618.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12618.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4C9; -. DR EnsemblBacteria; ABX12618; ABX12618; Nmar_0722. DR KEGG; nmr:Nmar_0722; -. DR eggNOG; ENOG410Z1A9; LUCA. DR KO; K00537; -. DR OMA; DYFKERF; -. DR BioCyc; NMAR436308:GI3J-748-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR006660; Arsenate_reductase-like. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF03960; ArsC; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51353; ARSC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 90 AA; 10575 MW; FEB39032496F0494 CRC64; MKTDIEKRDF FKEPFSESEL KKIVKMTGKK PSELLRKRDK MYKELDLENN KKTDSQIIKL MVQYPGLILR PIIISKNKAY VGKVDASKIK // ID A9A5G4_NITMS Unreviewed; 228 AA. AC A9A5G4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; DE Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421}; DE EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421}; DE AltName: Full=Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; DE AltName: Full=Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; DE AltName: Full=Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; GN Name=purQ {ECO:0000256|HAMAP-Rule:MF_00421}; GN OrderedLocusNames=Nmar_0779 {ECO:0000313|EMBL:ABX12675.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12675.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12675.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12675.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of the phosphoribosylformylglycinamidine synthase CC complex involved in the purines biosynthetic pathway. Catalyzes CC the ATP-dependent conversion of formylglycinamide ribonucleotide CC (FGAR) and glutamine to yield formylglycinamidine ribonucleotide CC (FGAM) and glutamate. The FGAM synthase complex is composed of CC three subunits. PurQ produces an ammonia molecule by converting CC glutamine to glutamate. PurL transfers the ammonia molecule to CC FGAR to form FGAM in an ATP-dependent manner. PurS interacts with CC PurQ and PurL and is thought to assist in the transfer of the CC ammonia molecule from PurQ to PurL. {ECO:0000256|HAMAP- CC Rule:MF_00421}. CC -!- CATALYTIC ACTIVITY: ATP + N(2)-formyl-N(1)-(5-phospho-D- CC ribosyl)glycinamide + L-glutamine + H(2)O = ADP + phosphate + 2- CC (formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_00421}. CC -!- CATALYTIC ACTIVITY: L-glutamine + H(2)O = L-glutamate + NH(3). CC {ECO:0000256|HAMAP-Rule:MF_00421}. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5- CC phospho-D-ribosyl)glycinamide: step 1/2. {ECO:0000256|HAMAP- CC Rule:MF_00421}. CC -!- SUBUNIT: Part of the FGAM synthase complex composed of 1 PurL, 1 CC PurQ and 2 PurS subunits. {ECO:0000256|HAMAP-Rule:MF_00421}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00421}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000256|HAMAP-Rule:MF_00421}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12675.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5G4; -. DR STRING; 436308.Nmar_0779; -. DR EnsemblBacteria; ABX12675; ABX12675; Nmar_0779. DR KEGG; nmr:Nmar_0779; -. DR eggNOG; arCOG00102; Archaea. DR eggNOG; COG0047; LUCA. DR HOGENOM; HOG000238240; -. DR KO; K01952; -. DR OMA; VLYRYCS; -. DR BioCyc; NMAR436308:GI3J-805-MONOMER; -. DR UniPathway; UPA00074; UER00128. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR GO; GO:0004642; F:phosphoribosylformylglycinamidine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_00421; PurQ; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR InterPro; IPR010075; PRibForGlyAmidine_synth_PurQ. DR PIRSF; PIRSF001586; FGAM_synth_I; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR01737; FGAM_synth_I; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00421}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00421}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00421}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00421}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000313|EMBL:ABX12675.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00421}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00421}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 228 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. FT ACT_SITE 88 88 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00421}. FT ACT_SITE 196 196 {ECO:0000256|HAMAP-Rule:MF_00421}. FT ACT_SITE 198 198 {ECO:0000256|HAMAP-Rule:MF_00421}. SQ SEQUENCE 228 AA; 25341 MW; D1F7C5A1A5893991 CRC64; MNVKVGVVVF PGSNCDRDMY HVLTDVFNLD AQYYWHEKSL PKNIDAVILP GGFSYGDRLR AGVIAAHSPI IKDVQKMAKK GIPVLGVCNG FQILVESGLL PGVLLKNESL NFMCEWTNLV VENNKTPFTN QFKLQQKIPI PIANGEGRYY VDDNTLKELK KKNQIVFRYD EVVNGSSNRI AGVCNEDGNV VGMMPHPERA VESEINPIDN KPSSLIFESL LSKMGVSN // ID A9A4V9_NITMS Unreviewed; 514 AA. AC A9A4V9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ABX13413.1}; GN OrderedLocusNames=Nmar_1517 {ECO:0000313|EMBL:ABX13413.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13413.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13413.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13413.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13413.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4V9; -. DR STRING; 436308.Nmar_1517; -. DR EnsemblBacteria; ABX13413; ABX13413; Nmar_1517. DR KEGG; nmr:Nmar_1517; -. DR eggNOG; arCOG01430; Archaea. DR eggNOG; COG0031; LUCA. DR HOGENOM; HOG000105165; -. DR KO; K01738; -. DR OMA; MDICPAP; -. DR BioCyc; NMAR436308:GI3J-1559-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR Pfam; PF00291; PALP; 1. DR SUPFAM; SSF53686; SSF53686; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 62 365 PALP. {ECO:0000259|Pfam:PF00291}. SQ SEQUENCE 514 AA; 56467 MW; E169512D75EA8C3B CRC64; MSENQNYDPA LLEKFEQEIW NKIPHVEGDK IVNATPLVDL TADLKECAKS VFKLNLDDKD FKIYGKFDSE LLSGSIKVRA ASHIIHEAIK EGKCNGKRVV IEATSGNFGI ALGLLSKLGV TVVALVSRKL QEGVFKELRN ENIKIMDLDM DICPAPGMEN KADEMAAKAT AGNIRSQLTE MGFDPQIFDN NLTEIEALLA KQDIINLARY LADIYDLFCP KQYDNELNID IHNTVTAPEI DQQLHELGDS LEDYALYCSF GTGGTSGGLS KYMTEKYNKK AVHVVFPPLG QDVAGIRTKS KAEGLTLYNP ESYTEHEIDF ENAKLILKYM VDKGHDIGES SALELFAALE MAYKGEIKKA VVMIADGIDK YRKNFEMIGK GSDVPMRVSL EDAAAVAGDY DNIIWVHTQY TPKEEGIEII AKSLGVDKSK ITIPKASTIN NLLSTQQVPE ELSKELDGSK GKSLLVCMAG NTSLMTAQVL ASKGIVTQSL NGGITNLPEG RGKNPGEYIQ VARE // ID A9A4Z7_NITMS Unreviewed; 163 AA. AC A9A4Z7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11906.1}; GN OrderedLocusNames=Nmar_0006 {ECO:0000313|EMBL:ABX11906.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11906.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11906.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11906.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11906.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0006; -. DR EnsemblBacteria; ABX11906; ABX11906; Nmar_0006. DR KEGG; nmr:Nmar_0006; -. DR eggNOG; arCOG08807; Archaea. DR eggNOG; ENOG41111J2; LUCA. DR HOGENOM; HOG000110285; -. DR OMA; HETHSIR; -. DR BioCyc; NMAR436308:GI3J-6-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 163 AA; 19577 MW; C36BA295B2520439 CRC64; MQPDEKIQAH VVSIWRESKK FLSIGGKEGM LVLTDKHLMF IHKTEAKMKW WKAITQRQVI NFIRSKNTMI RHDGYDEEDL MNDVEDKRNT ELSFDDISNI SFEEKTWGSV LELEYEQDGK KEKFQYSIAQ DWVKYPAKEP TKYMKVDWAP FVQYIKDRQK FTK // ID A9A526_NITMS Unreviewed; 116 AA. AC A9A526; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11935.1}; GN OrderedLocusNames=Nmar_0035 {ECO:0000313|EMBL:ABX11935.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11935.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11935.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11935.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11935.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0035; -. DR EnsemblBacteria; ABX11935; ABX11935; Nmar_0035. DR KEGG; nmr:Nmar_0035; -. DR BioCyc; NMAR436308:GI3J-35-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 116 AA; 12455 MW; C31E58AAE7E26E0D CRC64; MKSLTLLALL VLTVGIISTN QAFAEPLDSV STSVSNYDGD SATVEITWNN DDSVKNYKVG CVSCTPNIVE FTTGNSMTID NVTPFPNGSS ALLYVISYDS ENNIITAKQL IVNLNQ // ID A9A250_NITMS Unreviewed; 216 AA. AC A9A250; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12463.1}; GN OrderedLocusNames=Nmar_0567 {ECO:0000313|EMBL:ABX12463.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12463.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12463.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12463.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12463.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0567; -. DR EnsemblBacteria; ABX12463; ABX12463; Nmar_0567. DR KEGG; nmr:Nmar_0567; -. DR eggNOG; ENOG4102U9H; Archaea. DR eggNOG; ENOG4110ZK9; LUCA. DR BioCyc; NMAR436308:GI3J-590-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 82 102 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 175 195 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 216 AA; 24252 MW; A8FFE6F2E7FB0F6B CRC64; MGDLYLRGIF ESLIVFGIMT GLLLPARLLF VEFVSDDWLG SFGIITAISM SVIILAKKQK LGFFGSMLER QIYKFQKGKR GIVVFGESVF LLLILGTMIV AIDQGSSIHS QYMLQNFETI PMMNSPEQVL EMTTEMSPTD WIVGFLLAPS ALLTEFPKMS AAIASIDQSL DGWLMHFYTV GFVEYLELLG ILIFYRVSFK RKISVTANQL YVKAAI // ID A9A4B5_NITMS Unreviewed; 90 AA. AC A9A4B5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12604.1}; GN OrderedLocusNames=Nmar_0708 {ECO:0000313|EMBL:ABX12604.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12604.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12604.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12604.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12604.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0708; -. DR EnsemblBacteria; ABX12604; ABX12604; Nmar_0708. DR KEGG; nmr:Nmar_0708; -. DR eggNOG; arCOG10534; Archaea. DR eggNOG; ENOG4110ZVA; LUCA. DR BioCyc; NMAR436308:GI3J-733-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 90 AA; 10746 MW; 288DC4BC1536B17F CRC64; MNKMSKIVFP PHLEDKIFEI KYDSNTVSKI TSYFPFSDSE KQEITSIVNV DFLEFHSIFT DTVSDEEWNR TKDQIKKRFN DELFNIDKKS // ID A9A617_NITMS Unreviewed; 148 AA. AC A9A617; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13495.1}; GN OrderedLocusNames=Nmar_1599 {ECO:0000313|EMBL:ABX13495.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13495.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13495.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13495.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13495.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1599; -. DR EnsemblBacteria; ABX13495; ABX13495; Nmar_1599. DR KEGG; nmr:Nmar_1599; -. DR eggNOG; arCOG08662; Archaea. DR eggNOG; ENOG41110SQ; LUCA. DR BioCyc; NMAR436308:GI3J-1643-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 148 AA; 16844 MW; EFB7FAB00A6131FF CRC64; MTCKGICVRY KAQKPVGTGR YASGQRRCQI CEIFIKWEGL WCPCCGYRLR TKPRNLKYKA KLRARVEADA VEAKSVEVQP ETEEIAVKAK TTKSKTKKSK ATKTKEKTLC EYCQKSFVYL DKHQKNCKKN PNNIADASQE SESIAIKA // ID A9A4Y8_NITMS Unreviewed; 334 AA. AC A9A4Y8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13442.1}; GN OrderedLocusNames=Nmar_1546 {ECO:0000313|EMBL:ABX13442.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13442.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13442.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13442.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13442.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1546; -. DR EnsemblBacteria; ABX13442; ABX13442; Nmar_1546. DR KEGG; nmr:Nmar_1546; -. DR eggNOG; arCOG08035; Archaea. DR eggNOG; ENOG41111FS; LUCA. DR HOGENOM; HOG000108992; -. DR OMA; TWPESST; -. DR BioCyc; NMAR436308:GI3J-1589-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 311 331 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 334 AA; 36446 MW; B6664F53537167EE CRC64; MKLNILFLFF TILLIIQIPN SYAQFDTTDD EFVGLSLYTN SKVYAPSHNL QIYGTGLPEE NLILRLFAPD ETIAKFDQLT TNADGSYNHS LLTWPQPSSN LPYGTYTVEV ISTAQNGISK TIDVKFSSTT DLVDVPVERH VNTLVFAPET AAINQPIRVF VQTTSDGLLI GNEAGIKELL GNTHVHLPSG MTVTLTSSFK ALHQGLYYVD YTPIEEGTHV FHVIAFSQGT TSHGSAATNV LSQDLGGISE QIIRLNTILD DTSKELDVLK SEIEGFDNTL ETASSKIDES TGTISTSVEF ISEASSQLNS LLFPIIASIG IIVALQIAIL ARRR // ID A9A4Y4_NITMS Unreviewed; 154 AA. AC A9A4Y4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13438.1}; GN OrderedLocusNames=Nmar_1542 {ECO:0000313|EMBL:ABX13438.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13438.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13438.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13438.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13438.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Y4; -. DR STRING; 436308.Nmar_1542; -. DR EnsemblBacteria; ABX13438; ABX13438; Nmar_1542. DR KEGG; nmr:Nmar_1542; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR HOGENOM; HOG000104906; -. DR BioCyc; NMAR436308:GI3J-1585-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 82 149 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 154 AA; 17037 MW; EEF93527A50816E2 CRC64; MSSPTSSHAY GIGLIALLVG LSASVVFYTS FYLPESLAKP SVSHAILEPA EEFFLIEIVP GAVNDDGNDY LPQKAEALLT FTNNVRWINN DDTAHTVTPD HRYTDGYSGD FGSPGVIKPG DTYEFLFTEE TVIHYFCQPH PWMKGEITIA KSRF // ID A9A3R3_NITMS Unreviewed; 257 AA. AC A9A3R3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=ThiamineS protein {ECO:0000313|EMBL:ABX13325.1}; GN OrderedLocusNames=Nmar_1429 {ECO:0000313|EMBL:ABX13325.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13325.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13325.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13325.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13325.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3R3; -. DR STRING; 436308.Nmar_1429; -. DR EnsemblBacteria; ABX13325; ABX13325; Nmar_1429. DR KEGG; nmr:Nmar_1429; -. DR eggNOG; arCOG00536; Archaea. DR eggNOG; arCOG02197; Archaea. DR eggNOG; ENOG4110ZKA; LUCA. DR HOGENOM; HOG000108826; -. DR OMA; IETDILM; -. DR BioCyc; NMAR436308:GI3J-1464-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.20.30; -; 1. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR013926; CGI121/TPRKB. DR InterPro; IPR016155; Mopterin_synth/thiamin_S_b. DR InterPro; IPR003749; ThiS/MoaD. DR Pfam; PF08617; CGI-121; 1. DR Pfam; PF02597; ThiS; 1. DR SUPFAM; SSF54285; SSF54285; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 257 AA; 28370 MW; 536A0EEF7C28CBFA CRC64; MITVKLVGGA KKSFSTEKLE FEKSNITIQE LIDLLLETKP NDSPELDTEN ILIAVNGVDS SALEGKSTMI KNDDVVSIIP VIHGGASKKL LYKILSKQIQ VVQIKGQKNI DVKFLDDLRE KFPKIQLQAI SSKFVLNSSH LKKILSLSLE SQKNDVLLSN KLETDILMRF AISKQISAAI ASAGIKPKTD FLLIAIGNKT SLDSLYKQVS PQSIPLFSKN NEAFLKKSFD ISKKQIDSVY SKNPLEDILV ETAAVLL // ID A9A5E7_NITMS Unreviewed; 199 AA. AC A9A5E7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 52. DE SubName: Full=tRNA intron endonuclease {ECO:0000313|EMBL:ABX12346.1}; GN OrderedLocusNames=Nmar_0450 {ECO:0000313|EMBL:ABX12346.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12346.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12346.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12346.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12346.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5E7; -. DR STRING; 436308.Nmar_0450; -. DR EnsemblBacteria; ABX12346; ABX12346; Nmar_0450. DR KEGG; nmr:Nmar_0450; -. DR eggNOG; arCOG01701; Archaea. DR eggNOG; COG1676; LUCA. DR HOGENOM; HOG000108002; -. DR KO; K01170; -. DR OMA; MIHELEL; -. DR BioCyc; NMAR436308:GI3J-469-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0000213; F:tRNA-intron endonuclease activity; IEA:InterPro. DR GO; GO:0006388; P:tRNA splicing, via endonucleolytic cleavage and ligation; IEA:InterPro. DR Gene3D; 3.40.1350.10; -; 1. DR InterPro; IPR011856; tRNA_endonuc-like_dom. DR InterPro; IPR006677; tRNA_intron_Endonuc_cat-like. DR InterPro; IPR006678; tRNA_intron_Endonuc_N. DR InterPro; IPR006676; tRNA_splic. DR Pfam; PF01974; tRNA_int_endo; 1. DR Pfam; PF02778; tRNA_int_endo_N; 1. DR SUPFAM; SSF53032; SSF53032; 1. DR SUPFAM; SSF55267; SSF55267; 1. DR TIGRFAMs; TIGR00324; endA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Endonuclease {ECO:0000313|EMBL:ABX12346.1}; KW Hydrolase {ECO:0000313|EMBL:ABX12346.1}; KW Nuclease {ECO:0000313|EMBL:ABX12346.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 19 83 tRNA_int_endo_N. FT {ECO:0000259|Pfam:PF02778}. FT DOMAIN 94 178 tRNA_int_endo. FT {ECO:0000259|Pfam:PF01974}. SQ SEQUENCE 199 AA; 23515 MW; 70B687648D95EC8D CRC64; MLIWKSFGFL FIMEETPLVR GTLVSDQACI SDKKMIHELE LKGYGEIEKE KFFLKQFETL YLLYTNKLIL KKGKKEIDFD FFMNVCQKND SEILTKFLIY RDLRNRGYVV KDGFGFGSDF RVYERGHFGE KGAKFLIFGL NEGQQEKMGA LQKKIQEITQ MGKEPIIAVI ERRGEVIYYK INKMNFYENK ARLEESFNL // ID A9A479_NITMS Unreviewed; 334 AA. AC A9A479; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 59. DE SubName: Full=Thioredoxin reductase {ECO:0000313|EMBL:ABX12568.1}; GN OrderedLocusNames=Nmar_0672 {ECO:0000313|EMBL:ABX12568.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12568.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12568.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12568.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12568.1; -; Genomic_DNA. DR ProteinModelPortal; A9A479; -. DR SMR; A9A479; 27-330. DR STRING; 436308.Nmar_0672; -. DR EnsemblBacteria; ABX12568; ABX12568; Nmar_0672. DR KEGG; nmr:Nmar_0672; -. DR eggNOG; arCOG01296; Archaea. DR eggNOG; COG0492; LUCA. DR HOGENOM; HOG000072912; -. DR KO; K00384; -. DR OMA; GQLEMNN; -. DR BioCyc; NMAR436308:GI3J-697-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004791; F:thioredoxin-disulfide reductase activity; IEA:InterPro. DR GO; GO:0019430; P:removal of superoxide radicals; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 2. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR008255; Pyr_nucl-diS_OxRdtase_2_AS. DR InterPro; IPR000103; Pyridine_nuc-diS_OxRdtase_2. DR InterPro; IPR005982; Thioredox_Rdtase. DR Pfam; PF07992; Pyr_redox_2; 1. DR PRINTS; PR00469; PNDRDTASEII. DR SUPFAM; SSF51905; SSF51905; 1. DR TIGRFAMs; TIGR01292; TRX_reduct; 1. DR PROSITE; PS00573; PYRIDINE_REDOX_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 28 313 FAD/NAD-binding_dom. FT {ECO:0000259|Pfam:PF07992}. SQ SEQUENCE 334 AA; 36386 MW; 524657CA410AFDC6 CRC64; MMAADAGSTV LESKDDGPKM PDKKKTKFDV VIIGAGPSGY TAGIYCSRAG YDTLILSGIL PGGQLVNTTE VENYPGFENG IMGPDLMIEM RKQCQRMGTT IVDDEAVDVD FRRKPLKVLT ASEEYEGRAI IIATGANPRK LGLEGEETFG GKGVSYCATC DGPFFRNQEL VVVGGGDSAV EEATFLTKFA TTVHLVHRRD ELRASKVMQD RAHSNEKIKF HWDSAVVDIK GDQKMQQAVL KNLKTNEEST LDVGGLFVAI GHEPNTKLFK NQIDLDDEGY VVLKNKTHTN VEGVFAAGDV HDRSYRQAIT AAGYGCMAAI DVDKYLTESA DNQE // ID A9A390_NITMS Unreviewed; 329 AA. AC A9A390; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Abortive infection protein {ECO:0000313|EMBL:ABX12519.1}; GN OrderedLocusNames=Nmar_0623 {ECO:0000313|EMBL:ABX12519.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12519.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12519.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12519.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12519.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0623; -. DR EnsemblBacteria; ABX12519; ABX12519; Nmar_0623. DR KEGG; nmr:Nmar_0623; -. DR eggNOG; arCOG08741; Archaea. DR eggNOG; ENOG4112C5B; LUCA. DR HOGENOM; HOG000108213; -. DR OMA; IHWATNY; -. DR BioCyc; NMAR436308:GI3J-647-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR003675; CAAX_protease. DR Pfam; PF02517; Abi; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 75 94 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 115 138 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 158 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 212 230 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 242 263 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 297 316 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 329 AA; 36668 MW; 6845035964073E65 CRC64; MQNQNKLLQA VGIPFTALLS VIFGLLLVSF PIGIFVVFES DIGGDINYDF PITHLVLFEG TSVYQTASDV SIGDVFVGLW VFYVVLFVIA ILGPKTGFLK SFTSIISFGK YDSTSNYMVG VTKWLSILVL VSVLINFVQE QFGIVTVPPL DDNDLIQFFY VSLAPLIEEI GFRLILIGIP LFALYSRRTS VKYFFKCLWS PRNLDIYDSK KAILLIVFVG ILFGFAHIAF AESWTEGKFA QAAAGGIILG WVYLRFGFVA SLLIHWATNY FIFSYATFLS QINSISIESA FSHSLMSTLE LLLLASGILS VGMLFLHRYC SKKESSLEV // ID A9A1X8_NITMS Unreviewed; 94 AA. AC A9A1X8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12099.1}; GN OrderedLocusNames=Nmar_0203 {ECO:0000313|EMBL:ABX12099.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12099.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12099.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12099.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12099.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0203; -. DR EnsemblBacteria; ABX12099; ABX12099; Nmar_0203. DR KEGG; nmr:Nmar_0203; -. DR eggNOG; arCOG10520; Archaea. DR eggNOG; ENOG411103A; LUCA. DR OMA; AVYANIY; -. DR BioCyc; NMAR436308:GI3J-207-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 61 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 73 93 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 94 AA; 10232 MW; 90F41C4B678E0671 CRC64; MEPTSLILSI VSIINMGILG ILIAIFGNMY GKTRAQLPLG MIVVAAMLFL HNVVGAMAYF SMEHLFSNEI FPYMLGVGVA ELVGLIIFLK ITLD // ID A9A3I0_NITMS Unreviewed; 196 AA. AC A9A3I0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12912.1}; GN OrderedLocusNames=Nmar_1016 {ECO:0000313|EMBL:ABX12912.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12912.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12912.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12912.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12912.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12912; ABX12912; Nmar_1016. DR KEGG; nmr:Nmar_1016; -. DR eggNOG; arCOG09752; Archaea. DR eggNOG; ENOG410ZQ98; LUCA. DR OMA; SIASMAW; -. DR BioCyc; NMAR436308:GI3J-1044-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 79 105 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 117 140 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 152 181 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 196 AA; 21588 MW; 0B27FABA34A74B32 CRC64; MLEQDLKLYA SDAKYLENLI QTHLPDSENT DLKNDTKKET TQNKTLQNNS NENKPNSTKP NEIRVTSTRN YVRPLGVTII AILEIISGIS SIVIGAVFSM LVGFVGADVF DMIGTSIMGI VSGTMVAMGV VAFVLAWGLL KGKSWAWTVT LIFTILNVII SIPSMNPISL AINFVILYYL YRPHVKAYFG KGAEIL // ID A9A3R0_NITMS Unreviewed; 95 AA. AC A9A3R0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13322.1}; GN OrderedLocusNames=Nmar_1426 {ECO:0000313|EMBL:ABX13322.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13322.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13322.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13322.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13322.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3R0; -. DR STRING; 436308.Nmar_1426; -. DR EnsemblBacteria; ABX13322; ABX13322; Nmar_1426. DR KEGG; nmr:Nmar_1426; -. DR eggNOG; arCOG01055; Archaea. DR eggNOG; COG3432; LUCA. DR HOGENOM; HOG000223779; -. DR OMA; NISHTRI; -. DR BioCyc; NMAR436308:GI3J-1461-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 95 AA; 10792 MW; 863E66BCA1E2CFB7 CRC64; MAEYRTHMKI IGDILSTTRD DLQDEDGATV TYLIRKANVS HSRISRILKT LVSQGLLEQV DSQGSNKYKI SPTGREFLQA YYKFTSFADN FGLNI // ID A9A464_NITMS Unreviewed; 107 AA. AC A9A464; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:ABX12248.1}; GN OrderedLocusNames=Nmar_0352 {ECO:0000313|EMBL:ABX12248.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12248.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12248.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12248.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12248.1; -; Genomic_DNA. DR ProteinModelPortal; A9A464; -. DR STRING; 436308.Nmar_0352; -. DR EnsemblBacteria; ABX12248; ABX12248; Nmar_0352. DR KEGG; nmr:Nmar_0352; -. DR eggNOG; arCOG01752; Archaea. DR eggNOG; COG1911; LUCA. DR HOGENOM; HOG000106359; -. DR KO; K02908; -. DR OMA; KEDRCTI; -. DR BioCyc; NMAR436308:GI3J-367-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 3.30.1330.30; -; 1. DR InterPro; IPR029064; L30e-like. DR InterPro; IPR000231; Ribosomal_L30e. DR InterPro; IPR004038; Ribosomal_L7Ae/L30e/S12e/Gad45. DR PANTHER; PTHR11449; PTHR11449; 1. DR Pfam; PF01248; Ribosomal_L7Ae; 1. DR SUPFAM; SSF55315; SSF55315; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12248.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX12248.1}. FT DOMAIN 5 93 Ribosomal_L7Ae. FT {ECO:0000259|Pfam:PF01248}. SQ SEQUENCE 107 AA; 11896 MW; 7FA9E2F023F8F67E CRC64; MSKILEKSLK DAHKEGKLTM GTKQVLNSVK NSKLIVLSQS VEKEMIEQIE TDAKKEKIPL VNFQGTSVAL GRLCGLQFRI STISFTSIDD ANIKSILKDT EAEEKND // ID A9A5S0_NITMS Unreviewed; 381 AA. AC A9A5S0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13075.1}; GN OrderedLocusNames=Nmar_1179 {ECO:0000313|EMBL:ABX13075.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13075.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13075.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13075.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13075.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13075; ABX13075; Nmar_1179. DR KEGG; nmr:Nmar_1179; -. DR eggNOG; arCOG08686; Archaea. DR eggNOG; ENOG41111FD; LUCA. DR HOGENOM; HOG000106510; -. DR OMA; ESCIMIN; -. DR BioCyc; NMAR436308:GI3J-1211-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 357 376 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 381 AA; 42121 MW; D36D67CFC122C179 CRC64; MQKILWILLL VAVVGISTNF AYSQEIGLAT FQETAQVLVD RSISQNVTAS ITLQSTSIQE IRIPAELEQK LREDEMVKAV IITNQEQCVL GVFDESCIMI NVVRDPTAKG IIEIQDAAKE VAMPYIDEIN QVFDVNSKLH SVFVHSDDAS NEALETSGVI SGKGMISVVY TMSPEDTNAM YEKTSAILIP KIIRESGGFY EVAKNLSFEE NAKMTFSIIP LDSKSLLQLK LSVDYPNEAS TISEVSPLDL LKTNTINRSD YFSSGFYPLN SIIQVVILSP EDETISNIRG NIVPTQIIDN EKIPTDISKE GWVFDPQEGQ RIQGMYIFGE ETSVSKDKLK FSLGDAPPIQ PESSDDSLIV VIIISIVAIA AALFYLKGYK R // ID A9A2Y5_NITMS Unreviewed; 356 AA. AC A9A2Y5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX12113.1}; GN OrderedLocusNames=Nmar_0217 {ECO:0000313|EMBL:ABX12113.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12113.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12113.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12113.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|PIRSR:PIRSR004869-50}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|PIRSR:PIRSR004869-50}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12113.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Y5; -. DR STRING; 436308.Nmar_0217; -. DR EnsemblBacteria; ABX12113; ABX12113; Nmar_0217. DR KEGG; nmr:Nmar_0217; -. DR eggNOG; arCOG00946; Archaea. DR eggNOG; COG1180; LUCA. DR HOGENOM; HOG000227597; -. DR KO; K04069; -. DR OMA; PYIDAMN; -. DR BioCyc; NMAR436308:GI3J-222-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR InterPro; IPR027596; AmmeMemoSam_rS. DR InterPro; IPR016431; Pyrv-formate_lyase-activ_prd. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF004869; PflX_prd; 1. DR TIGRFAMs; TIGR04337; AmmeMemoSam_rS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|PIRSR:PIRSR004869-50}; KW Iron-sulfur {ECO:0000256|PIRSR:PIRSR004869-50}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR004869-50}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|PIRSR:PIRSR004869-50}. FT DOMAIN 83 230 Radical_SAM. {ECO:0000259|Pfam:PF04055}. FT METAL 87 87 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004869-50}. FT METAL 91 91 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004869-50}. FT METAL 94 94 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004869-50}. SQ SEQUENCE 356 AA; 40509 MW; FD20B26C9251FC32 CRC64; MTAILGKEAE LYEKLADDKV KCTACARYCE IGKGQIGLCG IRGNEDGKLQ LYAYGKVISG HVDPIEKKPL IHYYPGSKVY SIATTGCNWL CRYCQNSDIS QRREIQGIDM TPDQVVDTAI KYGAHGIAYT YNEPSIFIEF AKDCGVAARK KGLFNVFVSN GYDTTESVSM MNQFLDGITV DFKGSAEKEF TRKFIGVPDP QPIFDTLLEI RDKTNIHIEI TDLIVPKVGD DLEHAKKLSN FILDEFGPEM PIHFLRFHPD YKMMEYPSTP VETLEKHYQI AKEVGLKYVY LGNVPGHKWE HTYCSECNNV VVNRYGFSIR EWNLDKNNCC KFCGNKIPIK GKLQEGYKED RFQFVS // ID A9A4Y3_NITMS Unreviewed; 116 AA. AC A9A4Y3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13437.1}; GN OrderedLocusNames=Nmar_1541 {ECO:0000313|EMBL:ABX13437.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13437.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13437.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13437.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13437.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1541; -. DR EnsemblBacteria; ABX13437; ABX13437; Nmar_1541. DR KEGG; nmr:Nmar_1541; -. DR eggNOG; arCOG08633; Archaea. DR eggNOG; ENOG41110FN; LUCA. DR HOGENOM; HOG000104918; -. DR OMA; VKFRASI; -. DR BioCyc; NMAR436308:GI3J-1584-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 116 AA; 13380 MW; D02B068644F5AECA CRC64; MKDIEFKLNS TDIHPNSEIK GEITVSYPGR YDGVVINTQI LDSNEHITYK SYNGKTISNN VARLFINKDV MSENKAEFTA VIKFEPTQEY EVKFRASIIE QHKEIESQII FAKYSV // ID A9A4I8_NITMS Unreviewed; 505 AA. AC A9A4I8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Isopropylmalate/citramalate/homocitrate synthase {ECO:0000313|EMBL:ABX12966.1}; GN OrderedLocusNames=Nmar_1070 {ECO:0000313|EMBL:ABX12966.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12966.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12966.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12966.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the alpha-IPM synthase/homocitrate synthase CC family. {ECO:0000256|RuleBase:RU003523}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12966.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4I8; -. DR STRING; 436308.Nmar_1070; -. DR EnsemblBacteria; ABX12966; ABX12966; Nmar_1070. DR KEGG; nmr:Nmar_1070; -. DR eggNOG; arCOG02092; Archaea. DR eggNOG; COG0119; LUCA. DR HOGENOM; HOG000046859; -. DR KO; K01649; -. DR OMA; EMAGIEL; -. DR BioCyc; NMAR436308:GI3J-1101-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003852; F:2-isopropylmalate synthase activity; IEA:InterPro. DR GO; GO:0009098; P:leucine biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013709; 2-isopropylmalate_synth_dimer. DR InterPro; IPR002034; AIPM/Hcit_synth_CS. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR011830; LEU1_arch. DR InterPro; IPR000891; PYR_CT. DR Pfam; PF00682; HMGL-like; 1. DR Pfam; PF08502; LeuA_dimer; 1. DR SMART; SM00917; LeuA_dimer; 1. DR SUPFAM; SSF110921; SSF110921; 1. DR TIGRFAMs; TIGR02090; LEU1_arch; 1. DR PROSITE; PS00815; AIPM_HOMOCIT_SYNTH_1; 1. DR PROSITE; PS00816; AIPM_HOMOCIT_SYNTH_2; 1. DR PROSITE; PS50991; PYR_CT; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU003523}. FT DOMAIN 4 258 PYR_CT. {ECO:0000259|PROSITE:PS50991}. SQ SEQUENCE 505 AA; 54288 MW; 3DDAD142FB8CB18B CRC64; MTNVRIFDTT LRDGEQTLGV SLSPDQKLAI AKKLDELGVD AIEAGFPVIS EGELQAVKMI TAAGLSSEIC GLTRTIKKDI DAAIDAGLNY VHTFIATSDI HLEHKLQMTR EQALEKAIEA VEYGKSHGLQ VEFSAEDASR TDREFLKKVF SEVAKAGADR VNIPDTVGYS TPEYMAQITK DTIEATNLPV SVHCHNDFGL AVANALAGIH VGAACAHVTI NGIGERAGNA SLEELSMALK CLPYEQKYET NIKSELIYDV SRFISKTVGI IVQPNKAIVG ANAFGHESGI HTHGVLNNPL TYEPISPELV GRKRWLKVGK HAGVHGMNAM LEEYGVKPTE DQAKQILEKV KVLGDQGKQI TDVELLSMAS EVLGKKDLKR IVQLTGFSVS TGIGTMPYAF VKLNVDGQDH IGTDYGVGPV DAALNAIQKI TGKISEIRIK DYGLASISGG SGALCEVTVK VEDPLGNKVS AKSVGEDIVT TSVKAVIDAI NRIMLKKMLQ EKQVS // ID A9A168_NITMS Unreviewed; 148 AA. AC A9A168; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12354.1}; GN OrderedLocusNames=Nmar_0458 {ECO:0000313|EMBL:ABX12354.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12354.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12354.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12354.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12354.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0458; -. DR EnsemblBacteria; ABX12354; ABX12354; Nmar_0458. DR KEGG; nmr:Nmar_0458; -. DR OMA; TENDNCI; -. DR BioCyc; NMAR436308:GI3J-477-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 148 AA; 17134 MW; 893A91E6617DCD60 CRC64; MSSKNDKIVL IGLAIAAGLI LIFATNENSL VFLFFNQYTP VVWEEVIERN IVRSSIPIEI LDTENDNCIV SAKNFDKIVD HQYFVKSENI IEELKYDRND ETLSIPCDLL EGDKSRLNVW FVVEESPKHP NKYEYFVSPW EEITDSKS // ID A9A275_NITMS Unreviewed; 81 AA. AC A9A275; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12786.1}; GN OrderedLocusNames=Nmar_0890 {ECO:0000313|EMBL:ABX12786.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12786.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12786.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12786.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12786.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0890; -. DR EnsemblBacteria; ABX12786; ABX12786; Nmar_0890. DR KEGG; nmr:Nmar_0890; -. DR BioCyc; NMAR436308:GI3J-918-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 81 AA; 8589 MW; 1382FCAFD2CECB57 CRC64; MGNAMIYAGI AIGVAALAGI MVYAHDNQEN YLRDDAVLAP AAEQGAFSSD TGMVQLNKEQ WHEDPFGDRA AEVRAAYESG G // ID A9A2D2_NITMS Unreviewed; 200 AA. AC A9A2D2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=CMP/dCMP deaminase zinc-binding {ECO:0000313|EMBL:ABX12843.1}; GN OrderedLocusNames=Nmar_0947 {ECO:0000313|EMBL:ABX12843.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12843.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12843.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12843.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12843.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2D2; -. DR STRING; 436308.Nmar_0947; -. DR EnsemblBacteria; ABX12843; ABX12843; Nmar_0947. DR KEGG; nmr:Nmar_0947; -. DR eggNOG; arCOG01487; Archaea. DR eggNOG; COG2131; LUCA. DR HOGENOM; HOG000015714; -. DR KO; K01493; -. DR OMA; HNERIPW; -. DR BioCyc; NMAR436308:GI3J-975-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR InterPro; IPR002125; CMP_dCMP_Zn-bd. DR InterPro; IPR016193; Cytidine_deaminase-like. DR InterPro; IPR015517; dCMP_deaminase-rel. DR PANTHER; PTHR11086; PTHR11086; 1. DR Pfam; PF00383; dCMP_cyt_deam_1; 1. DR SUPFAM; SSF53927; SSF53927; 1. DR PROSITE; PS51747; CYT_DCMP_DEAMINASES_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 35 178 CMP/dCMP-type deaminase. FT {ECO:0000259|PROSITE:PS51747}. SQ SEQUENCE 200 AA; 22317 MW; 56375DE57F53816F CRC64; MLFTNILIAK KSEFNVIHIL NRPTELVLST FERPNWDEYF MLQAELAKLR SNCITRQVGA VIVRNHRQLA TGYNGTPPGI KNCFDGGCKR CQLRMEGKIE SGASLDRCLC NHAEANAIMH CAILGIEAGI EGAVLYTTFV PCLECTKMAI TIGIRKFVCL DSYPETDFDL LKEAGVEVIQ LDKAKIAKWA QELVNKYNSG // ID A9A367_NITMS Unreviewed; 59 AA. AC A9A367; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12496.1}; GN OrderedLocusNames=Nmar_0600 {ECO:0000313|EMBL:ABX12496.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12496.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12496.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12496.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12496.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0600; -. DR EnsemblBacteria; ABX12496; ABX12496; Nmar_0600. DR KEGG; nmr:Nmar_0600; -. DR eggNOG; arCOG03770; Archaea. DR eggNOG; ENOG410XU73; LUCA. DR OMA; TIEMIFG; -. DR BioCyc; NMAR436308:GI3J-623-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 59 AA; 6744 MW; 023760CC62C15933 CRC64; MFSKEKITVA YTVEKCEKCD MQKKRKFSEG DVLFAEISKC NSCDGITVID KIFGETLEQ // ID A9A1M0_NITMS Unreviewed; 443 AA. AC A9A1M0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13535.1}; GN OrderedLocusNames=Nmar_1639 {ECO:0000313|EMBL:ABX13535.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13535.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13535.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13535.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13535.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1639; -. DR EnsemblBacteria; ABX13535; ABX13535; Nmar_1639. DR KEGG; nmr:Nmar_1639; -. DR eggNOG; arCOG08728; Archaea. DR eggNOG; ENOG4110ZS3; LUCA. DR eggNOG; ENOG411114J; LUCA. DR BioCyc; NMAR436308:GI3J-1684-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 443 AA; 51730 MW; 86A2ADA85D09AB56 CRC64; MNLKISSLFA ITVLLLVISL QNPVFGDDSE PSIFPDWVRQ TTSIWIDGQM SDSEFLALIQ NILDKNIIPD EIKSQEILIN TAKTVIQDIP ELYEEKTLEL IPYWVKDRAE WWIDGKISDL QFLRTIHYLR EVGYLEYNPE QSIFSNDETF QSSLEKYLLN DKEILNITKE TKWRTFSTEY EFEEKEGVVD SVKIIFNDIT RVYEPIFYKF KVPTLTMQII EFNNKNDLDD YWNSFENKDK VFESAYLSGN PNENSECLFN YTSKGGLTSC IYENFIIHVI IFDQHNEHYN YDVSDLILDE TEPTTRFMSE ILKKIAYFNN DHMSSQLHHI LQKDIQENIS QDSSNPIQTV PKSIEPEKSA IQGVENFSCI RDDFGLVTIS GQYHNDHLKR PQVELSISFL DAKGNTVGKT STTFTDLQEF ESKRFVGHSK WSEHFHSCHV EVK // ID A9A1Y1_NITMS Unreviewed; 698 AA. AC A9A1Y1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 46. DE SubName: Full=CoA-binding domain protein {ECO:0000313|EMBL:ABX12102.1}; GN OrderedLocusNames=Nmar_0206 {ECO:0000313|EMBL:ABX12102.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12102.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12102.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12102.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12102.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Y1; -. DR STRING; 436308.Nmar_0206; -. DR EnsemblBacteria; ABX12102; ABX12102; Nmar_0206. DR KEGG; nmr:Nmar_0206; -. DR eggNOG; arCOG01340; Archaea. DR eggNOG; COG1042; LUCA. DR HOGENOM; HOG000220089; -. DR KO; K18593; -. DR OMA; IVIYMES; -. DR BioCyc; NMAR436308:GI3J-210-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0048037; F:cofactor binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.261; -; 2. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR003781; CoA-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR032875; Succ_CoA_lig_flav_dom. DR InterPro; IPR016102; Succinyl-CoA_synth-like. DR Pfam; PF13380; CoA_binding_2; 1. DR Pfam; PF13607; Succ_CoA_lig; 1. DR SMART; SM00881; CoA_binding; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF52210; SSF52210; 2. DR PROSITE; PS50975; ATP_GRASP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 491 544 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 698 AA; 75619 MW; 1A89F457B276F758 CRC64; MTDSPILSPK SIAVIGASDK RGSVGATITS NIMNGFKGTV YPISPTRDTV FYKKAYKSVL DVPKSIDLAV IVIKNTLVTP VLEECGKKKI KGVIIITAGF KEVDEEGAKR EQQVIDIAKK YNMQVVGPNC LGVMNLDSKT MMNSTFLKVT PKSGKIALVS QSGAICAALV EDASAQGIGF SAVVSLGNKA VMSEVDVLKI LANHKQTEVI VMYLEDMGDG QEFLKVCKNI TKKLKKPVLV LKSGRSPEGA KAAMSHTGAL MGSDEIYDAL LKQSGAIRVD TMEELFDYAT AFSKQPLPSN GDLVIVSNAG GPAIISTDAC SKAKIKMADI TSIRKKIDEV IPPWGSSRNP VDIVGDADFN RFHNVLDRVL KHPKVGSVIS MCTPSGTLNY DKLAEVIVEM SKKYKKTMLA SLMGLDEGVT NREILADGNV PYYTYAEGAI RTLAAMIRFS DWVKSSPGKI TKFKVNKAKA KKIFDQVKKE KRPNLLEEEG QEVLKAYGLP LPKSTLAKNE AEAVKAAKKI GYPVVMKIAS PQIIHKSDAG GVKVNLTNDA EVKDAFKTIV KNAKKYNKKA EIKGVLIVEM VKGGKELIIG SKLEPGFGPV IMLGMGGIYV EVLKDVTFKL APVTDKEADD MIASIKTQKL LQGVRGEKPS DIVKLSECIQ RLSQLVSDFK EIKELDMNPV LVMEKGKGCR ILDVRIGL // ID A9A5E9_NITMS Unreviewed; 130 AA. AC A9A5E9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX12348.1}; GN OrderedLocusNames=Nmar_0452 {ECO:0000313|EMBL:ABX12348.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12348.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12348.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12348.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12348.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5E9; -. DR STRING; 436308.Nmar_0452; -. DR EnsemblBacteria; ABX12348; ABX12348; Nmar_0452. DR KEGG; nmr:Nmar_0452; -. DR eggNOG; arCOG02391; Archaea. DR eggNOG; COG0784; LUCA. DR HOGENOM; HOG000034820; -. DR OMA; SICHEMI; -. DR BioCyc; NMAR436308:GI3J-471-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 124 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 130 AA; 14329 MW; 5497039A86B52FB8 CRC64; MSDSTKRITG IVVDDEPDIV DVFSEMLEDR GIEVIGKGGN GKEAIDLYFA NNPDIVFVDM MMPDGSGFYA IKKIRAKDSK AVIIAVTADV TSLTEEKLKK LKVNGIVYKP IDMDNLMEIV KISQISKISK // ID A9A2I5_NITMS Unreviewed; 486 AA. AC A9A2I5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13224.1}; GN OrderedLocusNames=Nmar_1328 {ECO:0000313|EMBL:ABX13224.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13224.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13224.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13224.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13224.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1328; -. DR EnsemblBacteria; ABX13224; ABX13224; Nmar_1328. DR KEGG; nmr:Nmar_1328; -. DR eggNOG; arCOG08705; Archaea. DR eggNOG; ENOG41111NK; LUCA. DR BioCyc; NMAR436308:GI3J-1362-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 486 AA; 52958 MW; AE90C87F1BF35CC1 CRC64; MNSIRLFSIS SVTAIFLLLS LSVFVPVLGE IAPPNKQMKL GVLAEDVICK EGLQLMIRSS GNAICVKDSS TTRLADSGSA IVVPNNPIPL IEKQTEESEN TVQDEITQKA EKTIVIEPTN VGYFPGDTID FSGKARGNQN LEITLIDPNE KEVFTEVFEL DSSGNVSFQI VTETFFVEGR YFLIAEQSDD SEITPVTIGH NSNDIQLVVD DFYNKLDSEL LIEMYSDPLS TVELAVYDYA EHEKFRSDIT VNSNGYAETT IDLSGYKSGV YSAVLTHGTE DVDVDFAVGL KTGSTLPITL SVTKEHYVPN ERVLIFGTAS SNSAVTLDVI NPDGDLVHEI ESYSDASGKI STMFNLPTSA ATGEWKIATT GRSIVNEATF HVTGNDPPLS FEIDKVEPYE TGDVLTLVGS GVDTVSKIAI SITSGEVIEK FEVFATEDGD FSLSWSIPED LESGTHTITV DDNITTVTKN FEVINPLYEK SYFTSP // ID A9A1B0_NITMS Unreviewed; 278 AA. AC A9A1B0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12745.1}; GN OrderedLocusNames=Nmar_0849 {ECO:0000313|EMBL:ABX12745.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12745.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12745.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12745.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12745.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0849; -. DR EnsemblBacteria; ABX12745; ABX12745; Nmar_0849. DR KEGG; nmr:Nmar_0849; -. DR eggNOG; arCOG08708; Archaea. DR eggNOG; ENOG4110ZWK; LUCA. DR HOGENOM; HOG000107254; -. DR OMA; YENDEFR; -. DR BioCyc; NMAR436308:GI3J-876-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 278 AA; 32587 MW; F4A6391EA92127F9 CRC64; MRLGTRSPNE FIKLLNEKND LIQKSFLTKI TDMTKMIDAK VMLGDATVSE QKTFDPKLVM DYFQNIGTNL KDWSIQDVTI SNNEDLRRIF MKFEIMEGNY LISGHVSIQF HVLLYYKPDQ RVIDCQKELS EIIDMTKNKE EELSNNSDQY VLDKLKEMGY KDFDHQKLFE VFYENDEFRE KIFSEIEEQS GVDFQKLSEK KTQLFNELDS LLVETYQTTP TLIDDSKLVS GEEGCLCTFD LEFVKNNTRE GLFDPRKMSE SAKEGIVKRL DEFVTIIN // ID A9A3E8_NITMS Unreviewed; 335 AA. AC A9A3E8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Biotin--acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:ABX12880.1}; GN OrderedLocusNames=Nmar_0984 {ECO:0000313|EMBL:ABX12880.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12880.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12880.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12880.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12880.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3E8; -. DR STRING; 436308.Nmar_0984; -. DR EnsemblBacteria; ABX12880; ABX12880; Nmar_0984. DR KEGG; nmr:Nmar_0984; -. DR eggNOG; arCOG01940; Archaea. DR eggNOG; COG0340; LUCA. DR HOGENOM; HOG000041811; -. DR KO; K03524; -. DR OMA; YAAGCAT; -. DR BioCyc; NMAR436308:GI3J-1012-MONOMER; -. DR BRENDA; 6.3.4.14; 10773. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004077; F:biotin-[acetyl-CoA-carboxylase] ligase activity; IEA:InterPro. DR GO; GO:0006464; P:cellular protein modification process; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR HAMAP; MF_00978; Bifunct_BirA; 1. DR InterPro; IPR030855; Bifunct_BirA. DR InterPro; IPR004408; Biotin_CoA_COase_ligase. DR InterPro; IPR003142; BPL_C. DR InterPro; IPR004143; BPL_LPL_catalytic. DR InterPro; IPR013196; HTH_11. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR PANTHER; PTHR12835; PTHR12835; 1. DR Pfam; PF02237; BPL_C; 1. DR Pfam; PF03099; BPL_LplA_LipB; 1. DR Pfam; PF08279; HTH_11; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR TIGRFAMs; TIGR00121; birA_ligase; 1. DR PROSITE; PS51733; BPL_LPL_CATALYTIC; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX12880.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 67 270 BPL/LPL catalytic. FT {ECO:0000259|PROSITE:PS51733}. SQ SEQUENCE 335 AA; 37350 MW; 07EED93E3F99BBBA CRC64; MIYNSFDNPG LVKVLTFLQT HNTEYLSGQD LSDVLRISRV AVWKHIKKIQ ELGYTVESKQ KLGYKLTKNS DALLPWEITS GLKTKTLGQH AFYFDSTDST QNQALKMAIE PENNGAIIVA EKQTGGRGRS GRKWVSPKGG IWFSIILHPR FDISITTLFP IASALALSIA LEKTFKISPE LKWPNDITIK GKKLAGMLVD VSLESNKIEN LVLGVGINFD VDVKQIEKNL KGTPNFYGVA SLNEKKIKIR PVELVQSFLV ELEKIYKLLD TKQTKKIISE WTKRSSTIGK NVKLNTVDGE IKGKAIRIDD DGALVVSDNK DTNRVIAGDI IHVSK // ID A9A449_NITMS Unreviewed; 258 AA. AC A9A449; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:ABX12233.1}; GN OrderedLocusNames=Nmar_0337 {ECO:0000313|EMBL:ABX12233.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12233.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12233.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12233.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12233.1; -; Genomic_DNA. DR ProteinModelPortal; A9A449; -. DR STRING; 436308.Nmar_0337; -. DR EnsemblBacteria; ABX12233; ABX12233; Nmar_0337. DR KEGG; nmr:Nmar_0337; -. DR eggNOG; arCOG02465; Archaea. DR eggNOG; COG1691; LUCA. DR HOGENOM; HOG000230756; -. DR KO; K06898; -. DR OMA; MIEEDVC; -. DR BioCyc; NMAR436308:GI3J-352-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.7700; -; 1. DR InterPro; IPR000031; PurE_dom. DR Pfam; PF00731; AIRC; 1. DR SMART; SM01001; AIRC; 1. DR SUPFAM; SSF52255; SSF52255; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 121 256 AIRC. {ECO:0000259|SMART:SM01001}. SQ SEQUENCE 258 AA; 27917 MW; CF1936280829C849 CRC64; METHEILKAV KTGKISINDA KKLLSIYSIE EIEGIAKIDI NRRKRRGIPE IIFAETKELE DIRKIIKRTL QKSNSVIVSR LKKTDYPKIQ TFAKKLKVKV KTGKKSSTLL LFKKPIKFQG GKVGILTAGT SDIGVAEEAR LVCEAMNCKC ITSYDVGVAG IQRIFPILKE MIEEDVDCII VAAGMEGALA TLVSTLVDIP IIGIPTSVGY GYGEKGIAAL ASMLQSCSLG LSVVNIDNGI AAGGIAANIA NRTIRKKE // ID A9A373_NITMS Unreviewed; 523 AA. AC A9A373; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Type I restriction-modification system, M subunit {ECO:0000313|EMBL:ABX12502.1}; GN OrderedLocusNames=Nmar_0606 {ECO:0000313|EMBL:ABX12502.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12502.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12502.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12502.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12502.1; -; Genomic_DNA. DR ProteinModelPortal; A9A373; -. DR STRING; 436308.Nmar_0606; -. DR REBASE; 16740; M.NmaSCMORF606P. DR EnsemblBacteria; ABX12502; ABX12502; Nmar_0606. DR KEGG; nmr:Nmar_0606; -. DR eggNOG; arCOG02632; Archaea. DR eggNOG; COG0286; LUCA. DR HOGENOM; HOG000239472; -. DR KO; K03427; -. DR OMA; AGKSVFQ; -. DR BioCyc; NMAR436308:GI3J-630-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR022749; D12N6_MeTrfase_N. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF12161; HsdM_N; 1. DR Pfam; PF02384; N6_Mtase; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 386 407 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 12 140 HsdM_N. {ECO:0000259|Pfam:PF12161}. FT DOMAIN 157 487 N6_Mtase. {ECO:0000259|Pfam:PF02384}. FT COILED 491 518 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 523 AA; 60369 MW; 0BD9EA31FD74B61D CRC64; MLSDQKLTFE QLEQRLFDAA DILRKHLDAS ENRKPVLTLL FLKRLNDIFE ENVEKLMKDE GLSKKEAENK RRHPIFYLPE DTRWNKLQNV SEDVGSKIIE ICKKIEDANQ KKLGGTMMVS EFNIKEKYPD TALVKLIDHF STTDEGYFRL RNSDLENEDI FGDAYEQLLE MFASETKKKG GQFYTPRKVV QLLVELMEPK YDYRINDPTC GSGGMLIHSR QYVEKSLKKE KKSSKEIEEL LKNLTLHGQD SNIDTVNMCK MNMVIHGVPS FSIEWGDVLE SPKFVKDGKL IEYDRVLANF PFSENWEASG KENDGYGRFK YGIAPAKDKA DFAFILHMLS SLNENGKAAI VCSQGVLFRG SSEQKIRENM IAGNKDENLQ GDMIEAIIAL PVALFYGTGI PACVLILNKN KPKERKNKIL FIYAANEFQE GKVRNKLRDK DIEHIVKAFK AFKDEDKYCH VAELDEIREN EFNLNVPRYV DISEEEKIID IQATIDELKK LDKERDELEL KVKQDLKELG FKV // ID A9A5K0_NITMS Unreviewed; 539 AA. AC A9A5K0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX12711.1}; GN OrderedLocusNames=Nmar_0815 {ECO:0000313|EMBL:ABX12711.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12711.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12711.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12711.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12711.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5K0; -. DR STRING; 436308.Nmar_0815; -. DR EnsemblBacteria; ABX12711; ABX12711; Nmar_0815. DR KEGG; nmr:Nmar_0815; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-842-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 454 539 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 539 AA; 57981 MW; 8FD0EBFACC0B4DD6 CRC64; MSKTSMVVFI TAIMIVGIVG TNVIPNAEAL KGKGVGTSQY GSSTDICGLV LCSDYPGGKE AYQTNWFKTF LNPSVVSEKT HSDDHDEHEV SKIVPSANNA DEEFPAQLDE VIHMFEKGKI SADEAIDGIK EVHDAYVDAK ISNDIIDGVG EKLALHDNGS LNTADAVESV HLTAEPQNVN PEYQGALDEV IHMFEKGKIS ADEAIDGIKE VHDGFVGLYI TSDLIEGVDV IIGHIDSGKL SGADAVESVH LTAEPQNVNP EYQGALDEVI HMFEKGKISA DEAIDGIKEV HDGFVGLYIT SDLIEGVDVI IGHIDSGKLS GADAVESVHL TAEPQNVNPE FIGALDEYLH KFELNELSAE DTIAGVIAVH SGLTSLYISS ELVEDVGNQI NVYNSGNDSA EHVLHEIHEV IEDAELAAVA AMSDSGIPVM KELPPNHVDI PKGSGVPGCE VDDWCYMSAN LHVHLGDTVT WVNSDTLPHT VTSVSSTGAE TPTPNDEDGL FDSGFMSGGD EWSYTFNAKG EYYYYCQLHP WMQGEINVE // ID A9A4Z1_NITMS Unreviewed; 404 AA. AC A9A4Z1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE RecName: Full=Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; DE EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945}; GN OrderedLocusNames=Nmar_1549 {ECO:0000313|EMBL:ABX13445.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13445.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13445.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13445.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the gamma-elimination of phosphate from L- CC phosphohomoserine and the beta-addition of water to produce L- CC threonine. {ECO:0000256|PIRNR:PIRNR038945}. CC -!- CATALYTIC ACTIVITY: O-phospho-L-homoserine + H(2)O = L-threonine + CC phosphate. {ECO:0000256|PIRNR:PIRNR038945}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|PIRNR:PIRNR038945, CC ECO:0000256|PIRSR:PIRSR038945-1}; CC -!- PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L- CC threonine from L-aspartate: step 5/5. CC {ECO:0000256|PIRNR:PIRNR038945}. CC -!- SIMILARITY: Belongs to the threonine synthase family. CC {ECO:0000256|PIRNR:PIRNR038945}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13445.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Z1; -. DR STRING; 436308.Nmar_1549; -. DR EnsemblBacteria; ABX13445; ABX13445; Nmar_1549. DR KEGG; nmr:Nmar_1549; -. DR eggNOG; arCOG01434; Archaea. DR eggNOG; COG0498; LUCA. DR HOGENOM; HOG000076502; -. DR KO; K01733; -. DR OMA; CSELIGD; -. DR BioCyc; NMAR436308:GI3J-1592-MONOMER; -. DR UniPathway; UPA00050; UER00065. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004795; F:threonine synthase activity; IEA:UniProtKB-EC. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:UniProtKB-UniPathway. DR InterPro; IPR004450; Thr_synthase-like. DR InterPro; IPR026260; Thr_Synthase_bac/arc. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR Pfam; PF00291; PALP; 1. DR PIRSF; PIRSF038945; Thr_synthase; 1. DR SUPFAM; SSF53686; SSF53686; 1. DR TIGRFAMs; TIGR00260; thrC; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|PIRNR:PIRNR038945}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|PIRNR:PIRNR038945}; KW Pyridoxal phosphate {ECO:0000256|PIRNR:PIRNR038945, KW ECO:0000256|PIRSR:PIRSR038945-1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Threonine biosynthesis {ECO:0000256|PIRNR:PIRNR038945}. FT DOMAIN 69 373 PALP. {ECO:0000259|Pfam:PF00291}. FT BINDING 131 131 Pyridoxal phosphate. FT {ECO:0000256|PIRSR:PIRSR038945-1}. FT BINDING 372 372 Pyridoxal phosphate. FT {ECO:0000256|PIRSR:PIRSR038945-1}. FT MOD_RES 105 105 N6-(pyridoxal phosphate)lysine. FT {ECO:0000256|PIRSR:PIRSR038945-2}. SQ SEQUENCE 404 AA; 43783 MW; 750AD15A93493E3D CRC64; MTRTSLQCRE CKKEYETAFK YICDDCFGPL DVKYDFPTVT KDTFSNREHT YWRYFELLPI ENKSNIVSID AGLTPLTKAE NLGKALDLNN LYIKNDSVNP TFSFKDRPAG VAISKAKEFG LSAVGCASTG NLASATAAHA AKGGFPCHVF APSNIEMAKI AQALSYGANY VAVDGTYDDA NRIAAQIGDS RGIGIVNINM RSHYVEGSKT LAYEVAEQLD WNVPDQLIVP VGSGAMLNAI CKGFEELQQV SLLDDVSNMH MIAAQPHGCA PVVDAFKKNS KDVIPVENPD TVAKSLAIGD PGDGRYVLKR LEQYNGFAEE CNNKEILDAI LLLAKTEGIF TEPAGGVSVS VLQKMVEQGK IDKNDKVVCY VTGNGLKATE SIMEVLEKPN VLKADISEVS AVVN // ID A9A1C8_NITMS Unreviewed; 87 AA. AC A9A1C8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12763.1}; GN OrderedLocusNames=Nmar_0867 {ECO:0000313|EMBL:ABX12763.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12763.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12763.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12763.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12763.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0867; -. DR EnsemblBacteria; ABX12763; ABX12763; Nmar_0867. DR KEGG; nmr:Nmar_0867; -. DR eggNOG; arCOG10556; Archaea. DR eggNOG; ENOG41111RE; LUCA. DR BioCyc; NMAR436308:GI3J-895-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 87 AA; 9702 MW; D922C8871722DC8C CRC64; MSELSLEDIE FIKILATSDA TVLQAGMNDA TRKRLDEQVG VILREYYHEN TTFSGTKRIK EFEKAGITED HGKAAIACAR RLGIDIS // ID A9A453_NITMS Unreviewed; 388 AA. AC A9A453; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 58. DE SubName: Full=Cysteine desulfurase {ECO:0000313|EMBL:ABX12237.1}; DE EC=2.8.1.7 {ECO:0000313|EMBL:ABX12237.1}; GN OrderedLocusNames=Nmar_0341 {ECO:0000313|EMBL:ABX12237.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12237.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12237.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12237.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|RuleBase:RU004504}; CC -!- SIMILARITY: Belongs to the class-V pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU004075}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12237.1; -; Genomic_DNA. DR ProteinModelPortal; A9A453; -. DR STRING; 436308.Nmar_0341; -. DR EnsemblBacteria; ABX12237; ABX12237; Nmar_0341. DR KEGG; nmr:Nmar_0341; -. DR eggNOG; arCOG00066; Archaea. DR eggNOG; COG1104; LUCA. DR HOGENOM; HOG000017510; -. DR KO; K04487; -. DR OMA; EPIQSGG; -. DR BioCyc; NMAR436308:GI3J-356-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031071; F:cysteine desulfurase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000192; Aminotrans_V_dom. DR InterPro; IPR020578; Aminotrans_V_PyrdxlP_BS. DR InterPro; IPR016454; Cysteine_dSase. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00266; Aminotran_5; 1. DR PIRSF; PIRSF005572; NifS; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00595; AA_TRANSFER_CLASS_5; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12237.1}. FT DOMAIN 2 361 Aminotran_5. {ECO:0000259|Pfam:PF00266}. SQ SEQUENCE 388 AA; 42530 MW; 751CED131E1F5884 CRC64; MIYLDNAAST QIHDDVLESM LPYLKEQYGN PSSIHRYGRL SRKAIEKARK QIASLINADP SEIFITSGGT ESNNTALRGI ATKYSSGQII TSSIEHDAIL EPCKKLSQEE FDVVYLPVDN FGMISLSNLK DSLSEKTRVV SIMFGNNEVG TIQPIAEIAK LCHEHDVVLH TDAVQAIGKV PIDVHELGVD LLSISSHKLY GPKGIGALYI KKDTLLNPMI LGGGQEHGLR SGTENVANIV GFGKACDIAK SNLDENISHM KKLRNLLVQT VSDEISQVTV NGHPERHLPN NAHFTFLGVN GEDLIIKLDE YGVAASTGSA CSVHTQKASH VLQAMGFSHE QITGSLRLTT GIFNDQKEIE QTVEILKRVV EELRSVSPFK EKYSFSKN // ID A9A4N3_NITMS Unreviewed; 106 AA. AC A9A4N3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ABX13011.1}; GN OrderedLocusNames=Nmar_1115 {ECO:0000313|EMBL:ABX13011.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13011.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13011.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13011.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13011.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N3; -. DR STRING; 436308.Nmar_1115; -. DR EnsemblBacteria; ABX13011; ABX13011; Nmar_1115. DR KEGG; nmr:Nmar_1115; -. DR eggNOG; arCOG03008; Archaea. DR eggNOG; ENOG41124BF; LUCA. DR HOGENOM; HOG000023868; -. DR OMA; ETTHVAR; -. DR BioCyc; NMAR436308:GI3J-1146-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.120.10; -; 1. DR InterPro; IPR013096; Cupin_2. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin. DR Pfam; PF07883; Cupin_2; 1. DR SUPFAM; SSF51182; SSF51182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 34 98 Cupin_2. {ECO:0000259|Pfam:PF07883}. SQ SEQUENCE 106 AA; 12268 MW; 37CE829848FEA926 CRC64; MKLEFDLTTY LEKIKNSSDY FHTFINRDSL AAGVLVLQPG EEDTQTPHDS DEVYYVISGD GFLRIKDKDY KVSKDKLFFV AKDVEHYFHG NTKELKVLYF FGGPDS // ID A9A4Z0_NITMS Unreviewed; 443 AA. AC A9A4Z0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:ABX13444.1}; GN OrderedLocusNames=Nmar_1548 {ECO:0000313|EMBL:ABX13444.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13444.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13444.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13444.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13444.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Z0; -. DR STRING; 436308.Nmar_1548; -. DR EnsemblBacteria; ABX13444; ABX13444; Nmar_1548. DR KEGG; nmr:Nmar_1548; -. DR eggNOG; arCOG00536; Archaea. DR eggNOG; arCOG01676; Archaea. DR eggNOG; COG0476; LUCA. DR HOGENOM; HOG000111042; -. DR KO; K11996; -. DR OMA; QVINDYA; -. DR BioCyc; NMAR436308:GI3J-1591-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008641; F:small protein activating enzyme activity; IEA:InterPro. DR Gene3D; 3.10.20.30; -; 1. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR016155; Mopterin_synth/thiamin_S_b. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000594; ThiF_NAD_FAD-bd. DR InterPro; IPR003749; ThiS/MoaD. DR Pfam; PF00899; ThiF; 1. DR Pfam; PF02597; ThiS; 1. DR SUPFAM; SSF54285; SSF54285; 1. DR SUPFAM; SSF69572; SSF69572; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 105 336 ThiF. {ECO:0000259|Pfam:PF00899}. SQ SEQUENCE 443 AA; 48139 MW; 887AC02C09D859CB CRC64; MANITFTIPS VLNHGGGEKK IEIPADSLQD VFTKISEQMG DDFKRRVLEG DGTPRSLINI YINGKNAKFS SGMETALKDG DEIYILPAVA GGSEELSPKE LDKFSRQVML EEIGYGGQLK LKNAKVCVVG TGGLGHPIIS RLATMGVGNL RIIDRDVIEL SNLHRQIMFD EDDVGQVKVE VAAKKLQKLN PDCKIEALAV SINDYTALEV VEGCDVVIDA LDSVNARYAL NKACVKYNIP FVTGAAVGTS GQAFTVLPKE SACYFCMFPE LNEDTMPTCS IEGVHPPILS IVGAIEVAEA VKIILGKKPN LSERILHIDL ESLDFNSTRT FRADECPICG TGKLEVVQKE ELILEELCGR NRGKRTYSIT PTDTFELDVD AVTNIAKQKG FLVDNQGDLG LSMRTNDLSV SFMKKGSAVV VGPKDEDDAI SLYNCLLGKE IKA // ID A9A162_NITMS Unreviewed; 346 AA. AC A9A162; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 46. DE SubName: Full=Glycosyl transferase family 2 {ECO:0000313|EMBL:ABX12023.1}; GN OrderedLocusNames=Nmar_0123 {ECO:0000313|EMBL:ABX12023.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12023.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12023.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12023.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12023.1; -; Genomic_DNA. DR ProteinModelPortal; A9A162; -. DR STRING; 436308.Nmar_0123; -. DR CAZy; GT2; Glycosyltransferase Family 2. DR EnsemblBacteria; ABX12023; ABX12023; Nmar_0123. DR KEGG; nmr:Nmar_0123; -. DR eggNOG; arCOG01383; Archaea. DR eggNOG; COG1216; LUCA. DR KO; K07011; -. DR OMA; DEAFFYG; -. DR BioCyc; NMAR436308:GI3J-126-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR001173; Glyco_trans_2-like. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00535; Glycos_transf_2; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12023.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 249 268 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 9 166 Glyco_trans_2-like. FT {ECO:0000259|Pfam:PF00535}. SQ SEQUENCE 346 AA; 40284 MW; 2D7C6B976AFC9780 CRC64; MNTEEPLVSI IILNYNAGKL IENCIESIHK SDYKNFEIIL VDNVSTDNSQ NKCKKKFPEI KLIQNQENLG YCGGNNIGIK TAKGEFIVIL NPDTIVEKSW LKEFLQEYKK IGLGLYQPKL LALDDTSRIN SAGNMIQIFG FGYSFGKGEK ENSNHDKNYL INYASGACLF TTKQVLEKIG FFDDFLFAYH DDLELGWRAR QLGIKSHYVP RCVVYHAESF SFGWSKKKYF LLERNRHYCL LTHYSRKTFF KMLPSLIIIE IIVIMFYLSK GMIKEKIEGY SNILKNWNGI KKKYLEIESK KEIKDVEIIK EFKNQIEIPS IVTGRIYSKK INYILNILSK FFIKIL // ID A9A4V5_NITMS Unreviewed; 141 AA. AC A9A4V5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13409.1}; GN OrderedLocusNames=Nmar_1513 {ECO:0000313|EMBL:ABX13409.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13409.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13409.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13409.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13409.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4V5; -. DR STRING; 436308.Nmar_1513; -. DR EnsemblBacteria; ABX13409; ABX13409; Nmar_1513. DR KEGG; nmr:Nmar_1513; -. DR eggNOG; arCOG01042; Archaea. DR eggNOG; COG1325; LUCA. DR KO; K07581; -. DR OMA; RIRIHIP; -. DR BioCyc; NMAR436308:GI3J-1555-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.1440.10; -; 1. DR InterPro; IPR022803; Ribosomal_L5_domain. DR InterPro; IPR002739; UPF0201. DR Pfam; PF01877; RNA_binding; 1. DR SUPFAM; SSF55282; SSF55282; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 141 AA; 16455 MW; 44763736FDA8E5DC CRC64; MNDKIEITVD AIVHATEDIS KIFQAFEILE LQEDDFTINE TTGHFDNPIV MLNAKIVKKQ ALNFLKRLIE LLPQEQIDEL IDEIEERTVD SRFHMRLDKQ ELVKGNVTIS EKDTIKLKIH TPIYNKKDTV KTFTEIFQIA N // ID A9A608_NITMS Unreviewed; 164 AA. AC A9A608; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13486.1}; GN OrderedLocusNames=Nmar_1590 {ECO:0000313|EMBL:ABX13486.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13486.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13486.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13486.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13486.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13486; ABX13486; Nmar_1590. DR KEGG; nmr:Nmar_1590; -. DR eggNOG; arCOG10592; Archaea. DR eggNOG; ENOG41111MH; LUCA. DR BioCyc; NMAR436308:GI3J-1634-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 164 AA; 18956 MW; 22071D4B8643C0E1 CRC64; MAAKKKTTVK KKPVKKATSK PKSKATKPKS STKSSTKKPE FEKAWKEYNS ALNGWKESLA QWQKATNETL MTYHDACQKA VESDAELLKK VSSSWESTWE EIGPEYIKQQ TKMIENIFKE TNIESIKKFN EQWEKFLKTS GDDSIMAYQE AIKRFNQAWQ SGQM // ID A9A4U6_NITMS Unreviewed; 104 AA. AC A9A4U6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13400.1}; GN OrderedLocusNames=Nmar_1504 {ECO:0000313|EMBL:ABX13400.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13400.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13400.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13400.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13400.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1504; -. DR EnsemblBacteria; ABX13400; ABX13400; Nmar_1504. DR KEGG; nmr:Nmar_1504; -. DR eggNOG; arCOG08674; Archaea. DR eggNOG; ENOG41111NQ; LUCA. DR HOGENOM; HOG000106160; -. DR OMA; YKGESEW; -. DR BioCyc; NMAR436308:GI3J-1546-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 104 AA; 12504 MW; D11EDF93FBBEECDE CRC64; MLNFKIKKLD IFQSYFFGEV EFREDPYKVN IQNQRRGKVL KLPFEINPKR ENVLVRFSGP GELFVEDYLP YKGESEWLEV DSDEITYYIA DHQDQLDTIE IVYD // ID A9A571_NITMS Unreviewed; 105 AA. AC A9A571; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 41. DE RecName: Full=50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; GN Name=rpl12 {ECO:0000256|HAMAP-Rule:MF_01478}; GN OrderedLocusNames=Nmar_0374 {ECO:0000313|EMBL:ABX12270.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12270.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12270.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12270.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Forms part of the ribosomal stalk, playing a central CC role in the interaction of the ribosome with GTP-bound translation CC factors. {ECO:0000256|HAMAP-Rule:MF_01478}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Homodimer, it forms CC part of the ribosomal stalk which helps the ribosome interact with CC GTP-bound translation factors. Forms a heptameric CC L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine CC to which the L12 dimers bind in a sequential fashion. CC {ECO:0000256|HAMAP-Rule:MF_01478}. CC -!- SIMILARITY: Belongs to the ribosomal protein L12P family. CC {ECO:0000256|HAMAP-Rule:MF_01478}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12270.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0374; -. DR EnsemblBacteria; ABX12270; ABX12270; Nmar_0374. DR KEGG; nmr:Nmar_0374; -. DR eggNOG; arCOG04287; Archaea. DR eggNOG; COG2058; LUCA. DR HOGENOM; HOG000229898; -. DR KO; K02869; -. DR OMA; MEYVYGA; -. DR BioCyc; NMAR436308:GI3J-390-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006414; P:translational elongation; IEA:InterPro. DR HAMAP; MF_01478; Ribosomal_L12_arch; 1. DR InterPro; IPR027534; Ribosomal_L12. DR InterPro; IPR022295; Ribosomal_L12_arc. DR TIGRFAMs; TIGR03685; ribo_P1_arch; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01478, KW ECO:0000313|EMBL:ABX12270.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01478, KW ECO:0000313|EMBL:ABX12270.1}. SQ SEQUENCE 105 AA; 10566 MW; FC0E831BF18E1E07 CRC64; MEYVYAALLL HKLEKEVNEA NVSSVVKASG AEVNEAQVKA LVAALADVNI DEAVKAAPVA VAAAAAPAAD GGDAAAGGEA KKEEKPKEEG KTEEAAMEGL SSLFG // ID A9A2V6_NITMS Unreviewed; 174 AA. AC A9A2V6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 43. DE SubName: Full=NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABX13633.1}; GN OrderedLocusNames=Nmar_1737 {ECO:0000313|EMBL:ABX13633.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13633.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13633.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13633.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13633.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2V6; -. DR STRING; 436308.Nmar_1737; -. DR EnsemblBacteria; ABX13633; ABX13633; Nmar_1737. DR KEGG; nmr:Nmar_1737; -. DR eggNOG; arCOG04624; Archaea. DR eggNOG; COG0431; LUCA. DR HOGENOM; HOG000109368; -. DR OMA; KEMVDET; -. DR BioCyc; NMAR436308:GI3J-1784-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.360; -; 1. DR InterPro; IPR029039; Flavoprotein-like_dom. DR InterPro; IPR005025; FMN_Rdtase-like. DR Pfam; PF03358; FMN_red; 1. DR SUPFAM; SSF52218; SSF52218; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 141 FMN_red. {ECO:0000259|Pfam:PF03358}. SQ SEQUENCE 174 AA; 19614 MW; DDBFFE03A7FF7218 CRC64; MKVVVISGSP RKNANTQIIM KYVYEYTKSK NQDVKLINLS DGQIECYRGP EEEYNQATKD AAKDIMEADV WLIGSPIYNS FFSSALKNLF EYINYKETAG KVAGMAILAA GNIGFIDVQT LITQLLSYFR VITNPKAVFL TTESINENNI SEDGQTRLKE MVDETLKMAE KLED // ID A9A2E7_NITMS Unreviewed; 250 AA. AC A9A2E7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12858.1}; GN OrderedLocusNames=Nmar_0962 {ECO:0000313|EMBL:ABX12858.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12858.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12858.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12858.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12858.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0962; -. DR ESTHER; nitms-a9a2e7; Duf_900. DR EnsemblBacteria; ABX12858; ABX12858; Nmar_0962. DR KEGG; nmr:Nmar_0962; -. DR eggNOG; arCOG07550; Archaea. DR eggNOG; ENOG410ZQEM; LUCA. DR HOGENOM; HOG000108859; -. DR OMA; ARLECKG; -. DR BioCyc; NMAR436308:GI3J-990-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.1820; -; 1. DR InterPro; IPR029058; AB_hydrolase. DR InterPro; IPR007941; DUF726. DR Pfam; PF05277; DUF726; 1. DR SUPFAM; SSF53474; SSF53474; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 250 AA; 27988 MW; 4E7D67C8E06C073D CRC64; MKPVPRISTR GYYDLKTGKT LKRNNYYLYP KKDFQKLIDS KELTIMIHGL RNDNAGAIAK AVLARNRLRK LGYSHPVIGF SYDSNTTGAH LIKHAKHALA VGQSIAKKNG RNLGKFIEDF KESSPKTKIR LMGHSLGSQV ILSTIEYLAK KKQNSGILES VYFFGASITE DVPSSKKYGK LLQTVVNKKI LNHYAPSDEV LSWADDKKYV LGPLGLNGAI GKPIKKYHQK LVKPKNHRFA SYAAVLNTFP // ID A9A220_NITMS Unreviewed; 428 AA. AC A9A220; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Phosphoglycerate mutase {ECO:0000313|EMBL:ABX12433.1}; DE EC=5.4.2.- {ECO:0000313|EMBL:ABX12433.1}; GN OrderedLocusNames=Nmar_0537 {ECO:0000313|EMBL:ABX12433.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12433.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12433.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12433.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12433.1; -; Genomic_DNA. DR ProteinModelPortal; A9A220; -. DR STRING; 436308.Nmar_0537; -. DR EnsemblBacteria; ABX12433; ABX12433; Nmar_0537. DR KEGG; nmr:Nmar_0537; -. DR eggNOG; arCOG01696; Archaea. DR eggNOG; COG3635; LUCA. DR HOGENOM; HOG000004785; -. DR KO; K15635; -. DR OMA; YVHLKGP; -. DR BioCyc; NMAR436308:GI3J-559-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046537; F:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.40.720.10; -; 2. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR006124; Metalloenzyme. DR InterPro; IPR004456; Phosphoglycerate_mutase_apgM. DR Pfam; PF01676; Metalloenzyme; 1. DR Pfam; PF10143; PhosphMutase; 1. DR PIRSF; PIRSF006392; IPGAM_arch; 1. DR SUPFAM; SSF53649; SSF53649; 2. DR TIGRFAMs; TIGR00306; apgM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12433.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 412 Metalloenzyme. FT {ECO:0000259|Pfam:PF01676}. SQ SEQUENCE 428 AA; 46535 MW; B684348D2D9520A0 CRC64; MDNSDVHMIY VLLDGVGDLP HPDLDGKTPL EAANTPILDK IASNGAIGEV ISVGKGIAPE SDIAVFNMLG YKFKHEDYAG RGVIEAIGIG IDFKDGDLAL RGNYSTLDDQ EVIIDRRAGR HIEKEDADGI AREIEEKIKF SNQNTSVVVS PTIGHRVTVR IRNSAEKLSS KITNTDPAYS NIGGMGVAKA VGDFLKIEKC LPLEDVEDAK ATANTVNEFS DQAISICKES QINKKREEQG KKKLSCILLR DAGNKYPDVI PINEKYGMNF SCIVDMPVEL GISEVLKMKA FEAGGLTDYE EKARVAAKAM ETQNSIYVHL KGPDEFGHDG DAIGKMKNIE EIDQRFFKTL VENIDTNKVA IVISADHSTP CINKGHSDDP VPVLVSGDFI KKDGTTRMTE AQAKKGSIGL LQGADVVTKS LELIKSQT // ID A9A2R1_NITMS Unreviewed; 198 AA. AC A9A2R1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 42. DE RecName: Full=V-type proton ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; DE AltName: Full=V-ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; GN Name=atpE {ECO:0000256|HAMAP-Rule:MF_00311}; GN OrderedLocusNames=Nmar_1692 {ECO:0000313|EMBL:ABX13588.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13588.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13588.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13588.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. {ECO:0000256|HAMAP-Rule:MF_00311}. CC -!- SIMILARITY: Belongs to the V-ATPase E subunit family. CC {ECO:0000256|HAMAP-Rule:MF_00311}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13588.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2R1; -. DR STRING; 436308.Nmar_1692; -. DR EnsemblBacteria; ABX13588; ABX13588; Nmar_1692. DR KEGG; nmr:Nmar_1692; -. DR eggNOG; arCOG00869; Archaea. DR eggNOG; COG1390; LUCA. DR HOGENOM; HOG000023862; -. DR KO; K02121; -. DR OMA; MANTNDT; -. DR BioCyc; NMAR436308:GI3J-1737-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033178; C:proton-transporting two-sector ATPase complex, catalytic domain; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0046961; F:proton-transporting ATPase activity, rotational mechanism; IEA:InterPro. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00311; ATP_synth_E_arch; 1. DR InterPro; IPR002842; ATPase_V1/A1-cplx_esu. DR Pfam; PF01991; vATP-synt_E; 1. PE 3: Inferred from homology; KW ATP synthesis {ECO:0000256|HAMAP-Rule:MF_00311}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrogen ion transport {ECO:0000256|HAMAP-Rule:MF_00311}; KW Ion transport {ECO:0000256|HAMAP-Rule:MF_00311}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transport {ECO:0000256|HAMAP-Rule:MF_00311}. SQ SEQUENCE 198 AA; 21517 MW; 62006DDD797A8895 CRC64; MANSALETTI SKILEQTEKS VISNVESALN ESLKTLDDSV PKLEQEFDKI IADGKKEADK IEKQIMGSAD IEARNKQLMA LEDAVDKVFS KALEQIANAD RSGDYSNLIK TMITEATQIL GTSEITVTTN AKDKDVVQST LSQFPGSELS SDTIDCLGGV VVKSKDGAMT FDNTIDARIE RLKPLIRKEI ASKFGVGE // ID A9A4G5_NITMS Unreviewed; 70 AA. AC A9A4G5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12654.1}; GN OrderedLocusNames=Nmar_0758 {ECO:0000313|EMBL:ABX12654.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12654.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12654.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12654.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12654.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12654; ABX12654; Nmar_0758. DR KEGG; nmr:Nmar_0758; -. DR BioCyc; NMAR436308:GI3J-784-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 70 AA; 8535 MW; 3AC69D69256C9DE6 CRC64; MDVKEEDKSE ESKRNHIKYY RSLAKTISDI REEEKQEQNP VIKNHLEKRI EAMEKDKIRI KEMFPDITDE // ID A9A4W4_NITMS Unreviewed; 236 AA. AC A9A4W4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13418.1}; GN OrderedLocusNames=Nmar_1522 {ECO:0000313|EMBL:ABX13418.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13418.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13418.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13418.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13418.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13418; ABX13418; Nmar_1522. DR KEGG; nmr:Nmar_1522; -. DR eggNOG; arCOG08643; Archaea. DR eggNOG; ENOG4110ZS7; LUCA. DR HOGENOM; HOG000105129; -. DR OMA; CENNEVI; -. DR BioCyc; NMAR436308:GI3J-1564-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 105 127 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 236 AA; 25562 MW; 442B3E7AC634B6C9 CRC64; MDSLLDDVKA LLEKDFGDDR ILKQIRRACE NNEVISNFER NYVKKLAEKH LGRKPETPNV EKTEIPVEKP VVPDVVIPET PSIQKTQTIH KTQPKISSSS SKNKLMIGIG VVALVVIIAA AVSLGGISNV TPKTVPPIVN TPTGTESLMI QTDFSSYNNK DIISINGISD TTGSVNLSIE NQKGELVWTE QLSLKSDGRY STLAIAGGPG WESSGTYTIK VDNGAETKSS TFSFTT // ID A9A5U3_NITMS Unreviewed; 124 AA. AC A9A5U3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX13098.1}; GN OrderedLocusNames=Nmar_1202 {ECO:0000313|EMBL:ABX13098.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13098.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13098.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13098.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13098.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5U3; -. DR STRING; 436308.Nmar_1202; -. DR EnsemblBacteria; ABX13098; ABX13098; Nmar_1202. DR KEGG; nmr:Nmar_1202; -. DR eggNOG; ENOG4102TWD; Archaea. DR eggNOG; COG0642; LUCA. DR HOGENOM; HOG000034820; -. DR KO; K03413; -. DR OMA; IIYTANP; -. DR BioCyc; NMAR436308:GI3J-1235-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 122 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 124 AA; 13943 MW; 52D6B6CA7D862C92 CRC64; MRTTLAVILV VDDNTDLLGL NTFMLKNLDY DVITATNGEE AVAAYKTARP DIVIMDIKMP KMDGFDAFFK IKKMNQSAKI ILISAYAIDE KKLLNAQSMG LLNVINKPYE FDDIEKLIKE HVGD // ID A9A4R4_NITMS Unreviewed; 821 AA. AC A9A4R4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13368.1}; GN OrderedLocusNames=Nmar_1472 {ECO:0000313|EMBL:ABX13368.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13368.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13368.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13368.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13368.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1472; -. DR EnsemblBacteria; ABX13368; ABX13368; Nmar_1472. DR KEGG; nmr:Nmar_1472; -. DR BioCyc; NMAR436308:GI3J-1509-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR016024; ARM-type_fold. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF48371; SSF48371; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 821 AA; 94161 MW; 8494A6C291752F6F CRC64; MNEENMSSEI GLGLSLAEMI FKFAQKSFKW NWNEYRTEII DEFGAKYPES RDILIDVLSK QEFSDNFKKL SEGSVQDFLN LLKGLENAFQ DTEYKFDSEK LLTEIKQKIE MEGAETSFQK IMTAYNQKIL NIATKLDSKM DKAIGILKEV HEQTVTKDSG DQDQQFQQGN LNLLSYLKEL TTKLEAKPPP EHKFGITFSD ENGEKFPITE LHSIIKSKRK VILKGAAGSG KSNTVTEFLK SIVKEKVLPV FIPINGSETE FFKELEDARD ESAESRIDKL LKMSSVEITV ERLKSFEGDV IIVIDGINEF KSGDFGELTE KIIQDVGEYV RQTSPHTYVL LTDRMDVRGA LTGWNKITLN PLSEEEIRKN LDITIGKEQY ELNDVSMSLL SRPFFLNIAM ERCSASMTSE SSVLNDFFKE RLKMNEEEMK KLAKASFFAY QEGSVSFELK NFVEITGQET FDKLLGGGAA FTTSDTHATF SHQLLHDFLV SEYLASHPEN WDVDEFDIAT LESSSLESIH LVMQQIENKE LADRFLLEVY DWNWKAAIAS IILNSKLGIN NHSEDIVTAM LVLVAQKQFD NGYETSESAK NHLGDYEKTF GEQLTKANNL KELIDMISVM KSESDLFDEW KQLFTIKRDS EINDETLKLL KSDNSLIGWT ASNVLRECNL SEENQKDLRD MYDYSDADVP NQNTRRWRII HPLGKCPSEE NKKLLFIALE TDPYHWVRYG AARALVEMAA ITEDADMRKD ILDKLGNMAS KLRKNILDEI GKTVFYRNAY GQWDESVIPL LEKVKESKSD HVHDEDWEER LSKYKKGEWK S // ID A9A1Q2_NITMS Unreviewed; 524 AA. AC A9A1Q2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13567.1}; GN OrderedLocusNames=Nmar_1671 {ECO:0000313|EMBL:ABX13567.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13567.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13567.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13567.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13567.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1671; -. DR EnsemblBacteria; ABX13567; ABX13567; Nmar_1671. DR KEGG; nmr:Nmar_1671; -. DR eggNOG; arCOG03564; Archaea. DR eggNOG; ENOG410Y6I5; LUCA. DR HOGENOM; HOG000106621; -. DR KO; K18235; -. DR OMA; ETEYAVI; -. DR BioCyc; NMAR436308:GI3J-1716-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.120.10.30; -; 2. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 524 AA; 59560 MW; 24B0CECEE7343194 CRC64; MNKSKYLIII ASTIVLAAVG LYAYDELIED KESKIQETRS EITIQTEPES IEIVELTGTP LDNYSPEERD QHCGKSDFKS TRYIEEFEIP TPCTQPLSII TDSEDNVWFV QSNTGNVAMF DPITKEFVEY QNDQWNLKTA SMMWGITITE DNEIWFTDET NDYIWRFSID DKTYSKIDFP SEIENAFPQK LEYHNGYFLI NDFTGNRIVI LNHENLDNGE TEYAVIATPS GFFTSQTSVD DDENIWFVIW KYQKEAILIK TNFETRETEN FILPSSISAP NGVSVGPAGN VWIADTASSS FYRFSPNDNK VIEFVTSDAP IWTFGNSSGL IKTPITRPYW NSFDSNGNMW FNQQTANRLA VFDPVSESLL EYDIPSKNPG WADCGELVDC GTAQSFDFTV QNGQVWFTEW VENNIGVLDT SVDIPVTLDV EQNEIEIKQG EQKKIFLTIK PQEKQKVELF LSTSTNSELI GTETNTEPIS ISEQSQIPVT ILVDENAHQG DYKILLSAHL LDVVVSEYVT VKVI // ID A9A3H6_NITMS Unreviewed; 157 AA. AC A9A3H6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=UspA domain protein {ECO:0000313|EMBL:ABX12908.1}; GN OrderedLocusNames=Nmar_1012 {ECO:0000313|EMBL:ABX12908.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12908.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12908.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12908.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12908.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3H6; -. DR STRING; 436308.Nmar_1012; -. DR EnsemblBacteria; ABX12908; ABX12908; Nmar_1012. DR KEGG; nmr:Nmar_1012; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR HOGENOM; HOG000238897; -. DR OMA; ANESIRQ; -. DR BioCyc; NMAR436308:GI3J-1040-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006015; Universal_stress_UspA. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. DR PRINTS; PR01438; UNVRSLSTRESS. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 151 Usp. {ECO:0000259|Pfam:PF00582}. FT COILED 60 91 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 157 AA; 17412 MW; 0500324CADD7101A CRC64; MYKAILVPHA GTPAGDNALK HAIHAAKNSS AKIIILHIIE EIQRPPISFG LAESEREKIF DSIKDANESI RQEMEKVMEK LSQQCNDESI ETKVKVEMGD AAEIILDTIQ NENIDLVVMA KRRKLKGVKK LLSLGSVSRK VVENVTCPVI LLDVDNT // ID A9A5R4_NITMS Unreviewed; 43 AA. AC A9A5R4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13069.1}; GN OrderedLocusNames=Nmar_1173 {ECO:0000313|EMBL:ABX13069.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13069.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13069.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13069.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13069.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1173; -. DR EnsemblBacteria; ABX13069; ABX13069; Nmar_1173. DR KEGG; nmr:Nmar_1173; -. DR BioCyc; NMAR436308:GI3J-1205-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 43 AA; 4789 MW; 9E0DA8F3DB9DAE2B CRC64; MKARFPGKCV ECGEAIKVGK EILKNSKEQW VHAACSDLED ELP // ID A9A618_NITMS Unreviewed; 220 AA. AC A9A618; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13496.1}; GN OrderedLocusNames=Nmar_1600 {ECO:0000313|EMBL:ABX13496.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13496.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13496.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13496.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13496.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1600; -. DR EnsemblBacteria; ABX13496; ABX13496; Nmar_1600. DR KEGG; nmr:Nmar_1600; -. DR eggNOG; arCOG03142; Archaea. DR eggNOG; ENOG4111QY5; LUCA. DR HOGENOM; HOG000109896; -. DR OMA; HEDIFEH; -. DR BioCyc; NMAR436308:GI3J-1644-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 220 AA; 25048 MW; 38431D118DDAB2A7 CRC64; MSNIDPLLNS RIGVATSYGK PYYRFSTYLK ALKLSFDSIL PEDIQNYSGH LILTTRKESP KICETPILHE DIFEHPPTVL RGIMMQKLNL DFEENDLILG IDPGERTGLS VFYYGKEIES SFHSSVEELV AHIIRVLGGL RAKRKIVKIG NGNMGIAKQI VTMLNLKFCS SFELEFVDER KTSMKIKNFN QRGKRDMLSA KYISQRDGYR HSILPLSITG // ID A9A5Z7_NITMS Unreviewed; 93 AA. AC A9A5Z7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=50S ribosomal protein L44e {ECO:0000256|HAMAP-Rule:MF_01476}; GN Name=rpl44e {ECO:0000256|HAMAP-Rule:MF_01476}; GN OrderedLocusNames=Nmar_1579 {ECO:0000313|EMBL:ABX13475.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13475.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13475.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13475.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000256|HAMAP- CC Rule:MF_01476}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01476}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01476}; CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01476}. CC -!- SIMILARITY: Belongs to the ribosomal protein L44e family. CC {ECO:0000256|HAMAP-Rule:MF_01476}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13475.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z7; -. DR STRING; 436308.Nmar_1579; -. DR EnsemblBacteria; ABX13475; ABX13475; Nmar_1579. DR KEGG; nmr:Nmar_1579; -. DR eggNOG; arCOG04109; Archaea. DR eggNOG; COG1631; LUCA. DR HOGENOM; HOG000224989; -. DR KO; K02929; -. DR OMA; THCKSKE; -. DR BioCyc; NMAR436308:GI3J-1623-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0070180; F:large ribosomal subunit rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.10.450.80; -; 1. DR HAMAP; MF_01476; Ribosomal_L44e; 1. DR InterPro; IPR000552; Ribosomal_L44e. DR InterPro; IPR011332; Ribosomal_zn-bd. DR PANTHER; PTHR10369; PTHR10369; 1. DR Pfam; PF00935; Ribosomal_L44; 1. DR ProDom; PD002841; Ribosomal_L44e; 1. DR SUPFAM; SSF57829; SSF57829; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01476}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01476, KW ECO:0000313|EMBL:ABX13475.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01476, KW ECO:0000313|EMBL:ABX13475.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01476}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01476}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_01476}; KW Zinc-finger {ECO:0000256|HAMAP-Rule:MF_01476}. FT ZN_FING 11 74 C4-type. {ECO:0000256|HAMAP- FT Rule:MF_01476}. FT METAL 11 11 Zinc. {ECO:0000256|HAMAP-Rule:MF_01476}. FT METAL 14 14 Zinc. {ECO:0000256|HAMAP-Rule:MF_01476}. FT METAL 71 71 Zinc. {ECO:0000256|HAMAP-Rule:MF_01476}. FT METAL 74 74 Zinc. {ECO:0000256|HAMAP-Rule:MF_01476}. SQ SEQUENCE 93 AA; 10602 MW; E219D05987EEC6B6 CRC64; MNIPKVIRKY CAKCKTHTEQ KVSIYKAGKR RGSARGERRH AERKHGYGGQ KFPKLAKPAK VTKKVTPIMT CTVCKKKYNK LGVRIKKFEL VAA // ID A9A3Z8_NITMS Unreviewed; 494 AA. AC A9A3Z8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Proton-translocating NADH-quinone oxidoreductase, chain N {ECO:0000313|EMBL:ABX12182.1}; DE EC=1.6.99.5 {ECO:0000313|EMBL:ABX12182.1}; GN OrderedLocusNames=Nmar_0286 {ECO:0000313|EMBL:ABX12182.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12182.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12182.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12182.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12182.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0286; -. DR EnsemblBacteria; ABX12182; ABX12182; Nmar_0286. DR KEGG; nmr:Nmar_0286; -. DR eggNOG; arCOG01540; Archaea. DR eggNOG; COG1007; LUCA. DR HOGENOM; HOG000100794; -. DR KO; K00343; -. DR OMA; TLALYYY; -. DR BioCyc; NMAR436308:GI3J-296-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR HAMAP; MF_00445; NDH1_NuoN_1; 1. DR InterPro; IPR010096; NADH-Q_OxRdtase_suN/2. DR InterPro; IPR003918; NADH_UbQ_OxRdtase. DR InterPro; IPR001750; ND/Mrp_mem. DR Pfam; PF00361; Proton_antipo_M; 1. DR PRINTS; PR01437; NUOXDRDTASE4. DR TIGRFAMs; TIGR01770; NDH_I_N; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12182.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 78 101 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 108 126 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 132 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 205 222 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 277 296 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 303 324 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 344 362 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 374 393 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 413 435 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 456 473 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 127 414 Proton_antipo_M. FT {ECO:0000259|Pfam:PF00361}. SQ SEQUENCE 494 AA; 52840 MW; DCF8E06E60E5FC8B CRC64; MLEITSTPLI LIAILGTVGV ILPIISIARK EKGSNSFYAV IAFAALIVSM AYVGYEFINE NVAASALFSD DVIVDDAFGG FFAIAMLIVA LFTTVGSFNY MRKHNSPAVY YSLILLATIG MILVAYSTDL VMLFVAWELM SIPTYILVGY MKKNPSSNEA ALKYFLFGAL SSAIIVYGIA ISYGLTGSTN IGEVIEGYST LDPSLLPLAL LSVGMFIAGF GFKMGLVPFH QWLPDTYEGA PSPVTALLAA ATKKAGFAAA IRIIVLGMMA LNLDWTLALG IIAVMTMTIG NVAAIMQKNL SRMLAYSSIA HAGYILIGLA VAPYSSLGLQ GSLYQIFNHA VMKGAAFIAI AGIVTTLAVT HIDKLKGLGR RMPITALGMV ISLFALAGVP PLSGFWSKLM LFGSALDAST ALWWAPWLAI AGVLNSALSL AYYGWITRKM YFEGETEKRV SEPKSIVAVM IFSIIFLVGF GVYPEPLLKF VEFATPVVSL GLMP // ID A9A3S2_NITMS Unreviewed; 189 AA. AC A9A3S2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABX13334.1}; GN OrderedLocusNames=Nmar_1438 {ECO:0000313|EMBL:ABX13334.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13334.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13334.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13334.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13334.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3S2; -. DR STRING; 436308.Nmar_1438; -. DR EnsemblBacteria; ABX13334; ABX13334; Nmar_1438. DR KEGG; nmr:Nmar_1438; -. DR eggNOG; arCOG00310; Archaea. DR eggNOG; COG1225; LUCA. DR HOGENOM; HOG000022344; -. DR OMA; GCTPQAC; -. DR BioCyc; NMAR436308:GI3J-1473-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR013740; Redoxin. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF08534; Redoxin; 1. DR SUPFAM; SSF52833; SSF52833; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 26 173 Redoxin. {ECO:0000259|Pfam:PF08534}. SQ SEQUENCE 189 AA; 21622 MW; 6DC42F651EA0AC7C CRC64; MNDKLTKLPH DLPIPKNDGK ASHLLGRQIP NLILPSTKNS FFDLSAIEKK YGILYFFPMM NMPEKDLPQG WNDIPGARGC TPQNISVTKH IIELEKHDAM PIGISSQPIA DLEQLSTLRN FSQILVSDNK LEFQKKLNVP VFAVDGNTLY KRLTLIVKNS KIIKVFYPVF PPDEHIFEIL KWLEKENEN // ID A9A4U7_NITMS Unreviewed; 172 AA. AC A9A4U7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13401.1}; GN OrderedLocusNames=Nmar_1505 {ECO:0000313|EMBL:ABX13401.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13401.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13401.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13401.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13401.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1505; -. DR EnsemblBacteria; ABX13401; ABX13401; Nmar_1505. DR KEGG; nmr:Nmar_1505; -. DR eggNOG; arCOG08673; Archaea. DR eggNOG; ENOG411107E; LUCA. DR OMA; RDMEESK; -. DR BioCyc; NMAR436308:GI3J-1547-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 18 37 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 172 AA; 19471 MW; D89BD55A592C04FD CRC64; MKWPGATDPY KRNKTIRFLI ISAGIGAAAV LMTTMIVNPA IGNQPHNACI DDLDTPWKIS FTFEMVKDGL KAEVQPNIGI TEECQRAIYT LSNDGTVYAE WTENPNFEIG HFLYISGFQI RDMEESKTEI FVNDKPSEHG LKTPIQDGYH YKAVFISKGY DESKDRDFLP DN // ID A9A4M7_NITMS Unreviewed; 368 AA. AC A9A4M7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=Luciferase family protein {ECO:0000313|EMBL:ABX13005.1}; GN OrderedLocusNames=Nmar_1109 {ECO:0000313|EMBL:ABX13005.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13005.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13005.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13005.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13005.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M7; -. DR STRING; 436308.Nmar_1109; -. DR EnsemblBacteria; ABX13005; ABX13005; Nmar_1109. DR KEGG; nmr:Nmar_1109; -. DR eggNOG; arCOG02410; Archaea. DR eggNOG; COG2141; LUCA. DR HOGENOM; HOG000106687; -. DR KO; K14728; -. DR OMA; EESWARM; -. DR BioCyc; NMAR436308:GI3J-1140-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016705; F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; IEA:InterPro. DR Gene3D; 3.20.20.30; -; 1. DR InterPro; IPR011251; Luciferase-like_dom. DR Pfam; PF00296; Bac_luciferase; 1. DR SUPFAM; SSF51679; SSF51679; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 26 337 Bac_luciferase. FT {ECO:0000259|Pfam:PF00296}. SQ SEQUENCE 368 AA; 41617 MW; F429FEA8A5DE503B CRC64; MYLTDKKLKF GIQNGLNVAR AGYTEDQILT ACMLADKTGY DSIFYMDHTN VPQWKNAIVL DPWVMLSAIA AVTNNVELGT CVTDAIRRHP SNIALAAITL DRVSKGRAIL GIGAGEAQNL KEFCIPFEKP VSKWEEQIET IHTLYKSTPD NTVDYEGKYY KLEGACLQAP PIRKPHPPTY MASGGKRTLA LTGKLGDGWL PIGYTPELFE DHAAQIKKSM DENNRTQEEK DNFQYALDID VYFSEDAEES WARMKEAVKV SLFKPEVLRV HNLKEIEGFD FVKYFTEYSM SNQEWIVKMR EAATKIPEAV ARSSTAVGTP DDIIPTFERF MDAGVNHFVI RFWGKNYFGS IDKFASHVMP ALREKAKQ // ID A9A1Q9_NITMS Unreviewed; 257 AA. AC A9A1Q9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12030.1}; GN OrderedLocusNames=Nmar_0130 {ECO:0000313|EMBL:ABX12030.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12030.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12030.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12030.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12030.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0130; -. DR EnsemblBacteria; ABX12030; ABX12030; Nmar_0130. DR KEGG; nmr:Nmar_0130; -. DR BioCyc; NMAR436308:GI3J-133-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 257 AA; 29731 MW; 251C6B80649C1ADC CRC64; MKILEVNVLD RNRDECKLDK SIDEIKENIL SKNLVIIKNL LSQKEAQEIR EFSREFAKNN HDSCPEIDLN IPNFHRIDNN PEKSQVKRIN HLYCFFYWNS ETNPIANYFK RQFRLRNLIS GLKEDYALNN LDDDFISIPS IQQYPCGGGY MQEHKDPDIG QKLVIDTILS SAPKDYKKGG LFVRDENNEK LFVDNLVSPG DAIAFYPQIS HGVDPIDPDS DIDWNRDDGR WMCFSTLTTL SSWKGIKDKA SPKPVTN // ID A9A2W9_NITMS Unreviewed; 69 AA. AC A9A2W9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13646.1}; GN OrderedLocusNames=Nmar_1750 {ECO:0000313|EMBL:ABX13646.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13646.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13646.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13646.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13646.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13646; ABX13646; Nmar_1750. DR KEGG; nmr:Nmar_1750; -. DR eggNOG; arCOG10602; Archaea. DR eggNOG; ENOG41111HQ; LUCA. DR BioCyc; NMAR436308:GI3J-1797-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 69 AA; 7929 MW; D906DD94AEFDA545 CRC64; MTLEEGLELI ENYKKGLEKF LETLPEQSVQ LGTEMIKTLT MNSKNEIKNL EAIEKALKRQ PKYESGLSE // ID A9A4J8_NITMS Unreviewed; 97 AA. AC A9A4J8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 43. DE SubName: Full=Vacuolar H+transporting two-sector ATPase F subunit {ECO:0000313|EMBL:ABX12976.1}; GN OrderedLocusNames=Nmar_1080 {ECO:0000313|EMBL:ABX12976.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12976.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12976.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12976.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12976.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4J8; -. DR STRING; 436308.Nmar_1080; -. DR EnsemblBacteria; ABX12976; ABX12976; Nmar_1080. DR KEGG; nmr:Nmar_1080; -. DR eggNOG; arCOG04102; Archaea. DR eggNOG; COG1436; LUCA. DR HOGENOM; HOG000106887; -. DR KO; K02122; -. DR OMA; EINRMDE; -. DR BioCyc; NMAR436308:GI3J-1111-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0034220; P:ion transmembrane transport; IEA:InterPro. DR Gene3D; 3.40.50.10580; -; 1. DR InterPro; IPR008218; ATPase_V1-cplx_f_g_su. DR Pfam; PF01990; ATP-synt_F; 1. DR SUPFAM; SSF159468; SSF159468; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 97 AA; 10475 MW; 69D85BEFE30FB090 CRC64; MKIFTVGSKS FVTSFQLAGV PGVISDTPQK ALEDIRKLTD DSDVGLVLVS DDITESINDE LTALRAEKST LVFALPATGS EKTEVDYRVM LKKILGV // ID A9A1V2_NITMS Unreviewed; 391 AA. AC A9A1V2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Aminotransferase class I and II {ECO:0000313|EMBL:ABX12073.1}; GN OrderedLocusNames=Nmar_0177 {ECO:0000313|EMBL:ABX12073.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12073.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12073.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12073.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|RuleBase:RU000479}; CC -!- SIMILARITY: Belongs to the class-I pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU000479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12073.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1V2; -. DR STRING; 436308.Nmar_0177; -. DR EnsemblBacteria; ABX12073; ABX12073; Nmar_0177. DR KEGG; nmr:Nmar_0177; -. DR eggNOG; arCOG01131; Archaea. DR eggNOG; COG0436; LUCA. DR HOGENOM; HOG000223042; -. DR OMA; CSDEIYD; -. DR BioCyc; NMAR436308:GI3J-179-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR004838; NHTrfase_class1_PyrdxlP-BS. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00105; AA_TRANSFER_CLASS_1; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000256|RuleBase:RU000481, KW ECO:0000313|EMBL:ABX12073.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU000479}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU000481, KW ECO:0000313|EMBL:ABX12073.1}. FT DOMAIN 34 376 Aminotran_1_2. FT {ECO:0000259|Pfam:PF00155}. SQ SEQUENCE 391 AA; 43258 MW; D3F337F9B58CCF2A CRC64; MKVSKKVAGV EYAIRDIVLA ARKVQQKGMQ VDYLNIGDPV QFGFQPPDNV KQALIDAINN GENYYSTSEG LLDLRQEIAK KENTKGLSIS ADEILVTNGV SEGLDMVISS IVEEGDEVLL PGPYYPPYAS YVRLHGGVPV EFAVDLDNST PDIDDIKSKI TSKTVAICLI SPNNPTGVVF NEKSLRELVD IANQHNLYII CDEIYDQIVF DEKFVGIGKV AGDSPVIVLN GFSKVHLMSG WRIGYIAFNN SPKLDAIREN LPKLARVRIA TSLPIQHAAL ESLRGPQDYI SNFVSEIKKR RDLVVKRLNE MPGLSCPNPK GSFYAFPKIE DNRFGTDKEF VTKLLESKGV LTVHGSGFGE QYGSGHFRLV YLPSLEILDS AMNKIEEFVS Q // ID A9A507_NITMS Unreviewed; 75 AA. AC A9A507; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11916.1}; GN OrderedLocusNames=Nmar_0016 {ECO:0000313|EMBL:ABX11916.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11916.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11916.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11916.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11916.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0016; -. DR EnsemblBacteria; ABX11916; ABX11916; Nmar_0016. DR KEGG; nmr:Nmar_0016; -. DR eggNOG; arCOG10511; Archaea. DR eggNOG; ENOG41111HV; LUCA. DR BioCyc; NMAR436308:GI3J-16-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 75 AA; 8579 MW; 28754EDD6BACA2E9 CRC64; MVYSYQVVKF QTISFVQGTH WSQSVGDKGI LYKSLKDPFS KLIVQTNDSK KLFRVPKDRT VIVTNDTVHF LGELA // ID A9A2S7_NITMS Unreviewed; 126 AA. AC A9A2S7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Heat shock protein Hsp20 {ECO:0000313|EMBL:ABX13604.1}; GN OrderedLocusNames=Nmar_1708 {ECO:0000313|EMBL:ABX13604.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13604.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13604.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13604.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13604.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2S7; -. DR STRING; 436308.Nmar_1708; -. DR EnsemblBacteria; ABX13604; ABX13604; Nmar_1708. DR KEGG; nmr:Nmar_1708; -. DR eggNOG; arCOG01832; Archaea. DR eggNOG; COG0071; LUCA. DR HOGENOM; HOG000251751; -. DR OMA; SREFYEF; -. DR BioCyc; NMAR436308:GI3J-1753-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.40.790; -; 1. DR InterPro; IPR002068; A-crystallin/Hsp20_dom. DR InterPro; IPR008978; HSP20-like_chaperone. DR Pfam; PF00011; HSP20; 1. DR SUPFAM; SSF49764; SSF49764; 1. DR PROSITE; PS01031; HSP20; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Stress response {ECO:0000313|EMBL:ABX13604.1}. FT DOMAIN 27 116 HSP20. {ECO:0000259|PROSITE:PS01031}. SQ SEQUENCE 126 AA; 14263 MW; 6DD0DED3073B903A CRC64; MGLVKEVIKE IGNKSREFYE FVLPPIDMYL NDDNLKVVID IPGFSKKDIK LTLCGDILSI QACKEVDEKE SESLISKQRP NIIDKKIRLP IDIKQGEEKI DSAKYEDGVL TLVIPVTKKG KDISIE // ID A9A4K0_NITMS Unreviewed; 83 AA. AC A9A4K0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12978.1}; GN OrderedLocusNames=Nmar_1082 {ECO:0000313|EMBL:ABX12978.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12978.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12978.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12978.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12978.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1082; -. DR EnsemblBacteria; ABX12978; ABX12978; Nmar_1082. DR KEGG; nmr:Nmar_1082; -. DR eggNOG; arCOG10573; Archaea. DR eggNOG; ENOG41110MR; LUCA. DR BioCyc; NMAR436308:GI3J-1113-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 83 AA; 9340 MW; 554177D2C3320614 CRC64; MDEAQQNSEI EKIANLMIHD GISPDEQEPA KLEKYKNQVK EDCNLNDEDA MKLVYETLLF RKLKSSDSGD LLDKGSDFGA GFS // ID A9A5C1_NITMS Unreviewed; 239 AA. AC A9A5C1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Nucleotidyl transferase {ECO:0000313|EMBL:ABX12320.1}; GN OrderedLocusNames=Nmar_0424 {ECO:0000313|EMBL:ABX12320.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12320.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12320.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12320.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12320.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C1; -. DR STRING; 436308.Nmar_0424; -. DR EnsemblBacteria; ABX12320; ABX12320; Nmar_0424. DR KEGG; nmr:Nmar_0424; -. DR eggNOG; arCOG00663; Archaea. DR eggNOG; COG1208; LUCA. DR HOGENOM; HOG000109214; -. DR KO; K00966; -. DR OMA; TRGKPYT; -. DR BioCyc; NMAR436308:GI3J-442-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR005835; NTP_transferase_dom. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00483; NTP_transferase; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12320.1}. FT DOMAIN 2 224 NTP_transferase. FT {ECO:0000259|Pfam:PF00483}. SQ SEQUENCE 239 AA; 27276 MW; 1764540884AF5526 CRC64; MKAIILAGGK GTRGKPYTEF FPKAMTPIDG KPMIDYIIKY LQKYNFIKEI IIISDFNGLG GQIKNYYGNQ KNISFVQDSQ SGTGGDLLHI EKKLKGESEF VLWFVDNLCA VDLKKMKETF TKKKSSACIA TRTKRREETG FAVVKDGIIT EFKEKPVMKL QLSECFGIYM LEKDIIQKIK AKKKQKEINL SYDILQQLSK EGKISAFDVG DKEWIDAESP SYLERNQKTV KKIIKQMGL // ID A9A5C6_NITMS Unreviewed; 117 AA. AC A9A5C6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12325.1}; GN OrderedLocusNames=Nmar_0429 {ECO:0000313|EMBL:ABX12325.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12325.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12325.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12325.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12325.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0429; -. DR EnsemblBacteria; ABX12325; ABX12325; Nmar_0429. DR KEGG; nmr:Nmar_0429; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000023857; -. DR OMA; IANIMGK; -. DR BioCyc; NMAR436308:GI3J-447-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 117 AA; 13557 MW; 319FFF50405572AF CRC64; MDFEKLYSNI LNLDSSIRYA AIQNNTGVKI AGGFRSDVTP ILSDEELQMM HYYASQRWQT RKNIEHKIGP AKYALAEYDK IKRITFPVDE KHLLMITTEI DADHTSIIKK ILELIIN // ID A9A2L6_NITMS Unreviewed; 225 AA. AC A9A2L6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 57. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX13255.1}; GN OrderedLocusNames=Nmar_1359 {ECO:0000313|EMBL:ABX13255.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13255.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13255.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13255.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH arsR-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000711}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13255.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2L6; -. DR STRING; 436308.Nmar_1359; -. DR EnsemblBacteria; ABX13255; ABX13255; Nmar_1359. DR KEGG; nmr:Nmar_1359; -. DR eggNOG; arCOG01686; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000023838; -. DR BioCyc; NMAR436308:GI3J-1393-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000711}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000711}; KW Transcription regulation {ECO:0000256|RuleBase:RU000711}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 219 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 24 106 HTH arsR-type DNA-binding. FT {ECO:0000259|SMART:SM00418}. SQ SEQUENCE 225 AA; 24292 MW; AD388FBBC47D7D15 CRC64; MDSDEPNISD KVDIISTEDD RLKVIGEILS SDSSRKILQL LFNQSFTANQ LAQKTELSLP LVIHHLKKMQ SVGVVKITNV GKNSKSHDMK FYIVDKVALV ILPNAMSQPA KKSKSLFNSF NRIHRLATLG GVSVAAWFTS QFMQKTSTVS SPSQPAPSSA PFMSRSADSE MTARVPAGNM ESSGADSAVM TGDVAVDVFL SVIVVLAIVV IGLGIEVALK SRKNR // ID A9A5H8_NITMS Unreviewed; 95 AA. AC A9A5H8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12689.1}; GN OrderedLocusNames=Nmar_0793 {ECO:0000313|EMBL:ABX12689.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12689.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12689.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12689.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12689.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0793; -. DR EnsemblBacteria; ABX12689; ABX12689; Nmar_0793. DR KEGG; nmr:Nmar_0793; -. DR eggNOG; arCOG08710; Archaea. DR eggNOG; ENOG41111NJ; LUCA. DR HOGENOM; HOG000107344; -. DR OMA; DFLCGFF; -. DR BioCyc; NMAR436308:GI3J-820-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 95 AA; 10781 MW; 5881C0DBB5DEFFC2 CRC64; MTLDPEFSKQ TTDLILQTLE LYKKSGASPR VGEIWNCEKI GDFLCGFFVG EMVGSALSAF QVVHQREPTA DEHLEIIELV ESHSKEIKEF FAKFN // ID A9A209_NITMS Unreviewed; 103 AA. AC A9A209; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=Translation initiation factor 1A {ECO:0000256|HAMAP-Rule:MF_00216}; DE Short=aIF-1A {ECO:0000256|HAMAP-Rule:MF_00216}; GN Name=eif1a {ECO:0000256|HAMAP-Rule:MF_00216}; GN OrderedLocusNames=Nmar_0526 {ECO:0000313|EMBL:ABX12422.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12422.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12422.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12422.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Seems to be required for maximal rate of protein CC biosynthesis. Enhances ribosome dissociation into subunits and CC stabilizes the binding of the initiator Met-tRNA(I) to 40 S CC ribosomal subunits. {ECO:0000256|HAMAP-Rule:MF_00216}. CC -!- SIMILARITY: Belongs to the eIF-1A family. {ECO:0000256|HAMAP- CC Rule:MF_00216}. CC -!- SIMILARITY: Contains 1 S1-like domain. {ECO:0000256|HAMAP- CC Rule:MF_00216, ECO:0000256|RuleBase:RU004366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12422.1; -; Genomic_DNA. DR ProteinModelPortal; A9A209; -. DR STRING; 436308.Nmar_0526; -. DR EnsemblBacteria; ABX12422; ABX12422; Nmar_0526. DR KEGG; nmr:Nmar_0526; -. DR eggNOG; arCOG01179; Archaea. DR eggNOG; COG0361; LUCA. DR HOGENOM; HOG000223676; -. DR KO; K03236; -. DR OMA; EEGHITD; -. DR BioCyc; NMAR436308:GI3J-547-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00216; aIF_1A; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR006196; RNA-binding_domain_S1_IF1. DR InterPro; IPR001253; TIF_eIF-1A. DR PANTHER; PTHR21668; PTHR21668; 1. DR Pfam; PF01176; eIF-1a; 1. DR ProDom; PD005579; TIF_eIF-1A; 1. DR SMART; SM00652; eIF1a; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS50832; S1_IF1_TYPE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Initiation factor {ECO:0000256|HAMAP-Rule:MF_00216, KW ECO:0000313|EMBL:ABX12422.1}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00216, KW ECO:0000313|EMBL:ABX12422.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 86 S1-like. {ECO:0000256|HAMAP- FT Rule:MF_00216, FT ECO:0000259|PROSITE:PS50832}. SQ SEQUENCE 103 AA; 12085 MW; F5F110922116226B CRC64; MGKRQVKSES ALKEIRLPEE GELFGRVLKM LGGENVLIKC TDNVTRRGRI RGKLKRRVWI RDNDIVIIAP WDFNEAEKGD IVWRFTLPQV EWLKENGHIP KDF // ID A9A633_NITMS Unreviewed; 138 AA. AC A9A633; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE SubName: Full=6,7-dimethyl-8-ribityllumazine synthase {ECO:0000313|EMBL:ABX13511.1}; GN OrderedLocusNames=Nmar_1615 {ECO:0000313|EMBL:ABX13511.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13511.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13511.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13511.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13511.1; -; Genomic_DNA. DR ProteinModelPortal; A9A633; -. DR STRING; 436308.Nmar_1615; -. DR EnsemblBacteria; ABX13511; ABX13511; Nmar_1615. DR KEGG; nmr:Nmar_1615; -. DR eggNOG; arCOG01323; Archaea. DR eggNOG; COG0054; LUCA. DR HOGENOM; HOG000229251; -. DR KO; K00794; -. DR OMA; QHAARKI; -. DR BioCyc; NMAR436308:GI3J-1659-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009349; C:riboflavin synthase complex; IEA:InterPro. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.960; -; 1. DR InterPro; IPR002180; DMRL_synthase. DR PANTHER; PTHR21058; PTHR21058; 1. DR Pfam; PF00885; DMRL_synthase; 1. DR SUPFAM; SSF52121; SSF52121; 1. DR TIGRFAMs; TIGR00114; lumazine-synth; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 138 AA; 14994 MW; 452BA5F973543B06 CRC64; MNIAIVVSEF NDEVTSRMLS VAQEKADSLK LKITYTCSVP GAYDMPIIVD TLLQKNDVDA VVTLGAIIKG QTKHDEVISH AAAQALTDLS IKHQKPVSLG ISGPGMQERH AHARIRPVAE RAVEAVVKIS SELKRIQK // ID A9A496_NITMS Unreviewed; 113 AA. AC A9A496; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12585.1}; GN OrderedLocusNames=Nmar_0689 {ECO:0000313|EMBL:ABX12585.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12585.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12585.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12585.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12585.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12585; ABX12585; Nmar_0689. DR KEGG; nmr:Nmar_0689; -. DR eggNOG; arCOG08023; Archaea. DR eggNOG; ENOG4110ZSP; LUCA. DR BioCyc; NMAR436308:GI3J-714-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 113 AA; 12436 MW; 467CEC5EBF13D5F1 CRC64; MAELKVQGSG GYVIADLTDE QAKKADLGVG KLFLAPIGKI ETEKMLKHYC NNCETEFDNP PKIQLEESPN EEVADNLILI ERGQYVCEKC SGVIGEYRKF QKKGEVGSAR PSG // ID A9A3A8_NITMS Unreviewed; 313 AA. AC A9A3A8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12537.1}; GN OrderedLocusNames=Nmar_0641 {ECO:0000313|EMBL:ABX12537.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12537.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12537.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12537.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12537.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0641; -. DR EnsemblBacteria; ABX12537; ABX12537; Nmar_0641. DR KEGG; nmr:Nmar_0641; -. DR eggNOG; arCOG08669; Archaea. DR eggNOG; ENOG411117T; LUCA. DR HOGENOM; HOG000106126; -. DR OMA; GEIMFLP; -. DR BioCyc; NMAR436308:GI3J-666-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR026392; Exo/Archaeosortase_dom. DR InterPro; IPR027561; Thauma_sortase. DR TIGRFAMs; TIGR04178; exo_archaeo; 1. DR TIGRFAMs; TIGR04297; thauma_sortase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 83 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 103 123 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 151 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 202 224 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 236 259 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 279 296 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 313 AA; 35402 MW; 1F7820EC692396D5 CRC64; MQNLNLIAGI LIIASPILFS MIAYPDSVAW SWNEGRGGYL FALVFVVAEL VGLKIVISKK RLLAVIPIAL LTISYLISLE YGLRDYIVES AEQFDVQLIY SWTWMWDFVV MAIFIVVALS IFFGKRWIRI APAGPIFLTG TAIILSLDAF FPYDTLGPLQ YIVPYFVQAN VWVITALELG TAVARDNVMF LRGDHGSMAL QVFWPSAGVH SIIIFSLVIG AFMLKMNIPR ARKSMYFVLG IIGTITVNLI RIFSLSWYAL KVTTDPVAWE EYHKIAGEIM FLPWLFAFIL VVILIESRRL KKQEERDGTK NNS // ID A9A397_NITMS Unreviewed; 970 AA. AC A9A397; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12526.1}; GN OrderedLocusNames=Nmar_0630 {ECO:0000313|EMBL:ABX12526.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12526.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12526.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12526.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12526.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12526; ABX12526; Nmar_0630. DR KEGG; nmr:Nmar_0630; -. DR eggNOG; arCOG08752; Archaea. DR eggNOG; ENOG41111SF; LUCA. DR HOGENOM; HOG000108535; -. DR OMA; NDWESAR; -. DR BioCyc; NMAR436308:GI3J-655-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 970 AA; 111271 MW; 7132C642B51C6BF9 CRC64; MPVYAFAQSP DRITILDNFG DYEHGEPLFV YGQIANLVDD SFLIMQIINP HGDLCQIQQL IPQENGVFLT DVIPLKGRIC GLPGEYEIKL FYGDYTKSTK FNVSSDIHSE STTEQKVLLA QTLVSEHASL ISETFDISNP ISNEIPDTLS ELKSTYVDLW DEFFVDELIF EINPLIRPAV VNSLDSVQEL LDQDEISFEI AKSIERTVFE AIFYYEINDK TTAINLLSDI FVDITNVNPE KTVSPRAPSF DELEETLLNL MKKSDTVMSK SVKTEIGFIF ARGTAPIYSD DITELIDLLS KSRYLDIVSR KQSDLYRLVN NDWESVKPSL TEKESISELL ASSARVSELH QASIILKDMS DVERFVSSDS EENTDLINLV KPEWDNLESK LVLATSVDEI LESESEIDQM VQVIEISSRL GKIIEISQIS NVDSGLTSDW KSLLETVENA QSVDEILAVV SEFDQTMTEL REKRNPLVVL EFEYKSMKEK AELQADYQNL FLIDNALNIL ETAKQMESGN PSITRIDRIE VLLSWASEKA PQIKEDLDSY DKDAFKIRAS DILQRAKSLE NLVELSLTKN RFLPNYIEFT DKLNEKIDNV RDLVIQNDLE QADILVRELF DEWTLVSEKY VEDPYGSDVG YNVDEIKRIE FRERLQTYSD MTSTFYNNDF TNHVDGYKQL MNEAYELIDI GNFVDAESKV TEIGDYLSDY LVLKTPSIMY DISYDHEKDI WILNGATEKS RFDYRENLYV TVYNMDGTLH SNMEFTDTRQ GNFYTQWNAP AESGLYVVML QYKDSKATQI VHIEEEFEYT YNSSDLDMVD LAREFEELES FAQKFGGENF DNNSRFASVI TEIKAGFDDK DAQSVGNNLD ELRTIIERYL PIRNPNAPIE AIYAENELVI SGRILKTVQF SEDLFIDIYN QRGERVEEIA LKDDPSGLFN KVISQPFENG VYVVQLQYHD LIVTDFFKVP // ID A9A4X9_NITMS Unreviewed; 100 AA. AC A9A4X9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABX13433.1}; GN OrderedLocusNames=Nmar_1537 {ECO:0000313|EMBL:ABX13433.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13433.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13433.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13433.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13433.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X9; -. DR STRING; 436308.Nmar_1537; -. DR EnsemblBacteria; ABX13433; ABX13433; Nmar_1537. DR KEGG; nmr:Nmar_1537; -. DR eggNOG; arCOG00291; Archaea. DR eggNOG; COG1145; LUCA. DR HOGENOM; HOG000105738; -. DR OMA; DEQRCIG; -. DR BioCyc; NMAR436308:GI3J-1579-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR Pfam; PF12838; Fer4_7; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 37 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 44 73 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 100 AA; 11025 MW; 770675CCD21D310A CRC64; MPIAILPDID EQRCIGCALC VEICTTLGPD VLRVKPVEGW KRGKAFVFYP ERCISDGACI GVCPTKSIFW MRPMNYTAGQ PVPLHKNGIF INGWAEDAAL // ID A9A1A6_NITMS Unreviewed; 466 AA. AC A9A1A6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 38. DE SubName: Full=FeS assembly protein SufD {ECO:0000313|EMBL:ABX12392.1}; GN OrderedLocusNames=Nmar_0496 {ECO:0000313|EMBL:ABX12392.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12392.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12392.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12392.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12392.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1A6; -. DR STRING; 436308.Nmar_0496; -. DR EnsemblBacteria; ABX12392; ABX12392; Nmar_0496. DR KEGG; nmr:Nmar_0496; -. DR eggNOG; arCOG01715; Archaea. DR eggNOG; COG0719; LUCA. DR HOGENOM; HOG000108690; -. DR KO; K09014; -. DR OMA; EETRYNE; -. DR BioCyc; NMAR436308:GI3J-516-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016226; P:iron-sulfur cluster assembly; IEA:InterPro. DR InterPro; IPR000825; SUF_FeS_clus_asmbl_SufBD. DR InterPro; IPR011542; SUF_FeS_clus_asmbl_SufD. DR Pfam; PF01458; UPF0051; 1. DR TIGRFAMs; TIGR01981; sufD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 466 AA; 52732 MW; E7AC7E10FDB4CAE0 CRC64; MSQETLSKID ESHINEISSS RNEPDWLKDY RKDSLSIYST LPIEMSPLYN KYTDAKRLNP EKISIASSTK DTIPDFLQKR LGELENEICI IQIGTNIHKI NLPDDLKSKG LVISSISDAI QNNSELVKKA LEASNSNDDK FTALNNAAFN SGVFIHIPKN FVLEKPIHFL SCLSDDGLST ISRNVIFADE SSKASIVQEL YSPKTETQQA YLELLNTNVA ANAELSLTTL QMMDQNSVNF STRRTDLAQD ATVNWYSGLF GSVLSRYKID YYLNGTGASS NESEVVFGNN DQHFDIQTNM NHQSPATEAR VVEKSILKNR SKSLFKGMIR IKENAAKSNS FLSGRSILLD KNAKSDAIPG LEILTNDVKA THSASVAQID EEQIFYLKSR CLSHEEAERT IVEGFLEPLS RKMSFQVRAW IAYLIESKWE NRELTINTDE ELAKFVEIEE TRYNEDAEIE QHYKYR // ID A9A284_NITMS Unreviewed; 77 AA. AC A9A284; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12795.1}; GN OrderedLocusNames=Nmar_0899 {ECO:0000313|EMBL:ABX12795.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12795.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12795.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12795.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12795.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12795; ABX12795; Nmar_0899. DR KEGG; nmr:Nmar_0899; -. DR eggNOG; arCOG10566; Archaea. DR eggNOG; ENOG41110I9; LUCA. DR BioCyc; NMAR436308:GI3J-927-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 77 AA; 8909 MW; F8C39AA7A9A35D1A CRC64; MTKDSDFSEH ELFVTEFPKQ GFGIVDYLQG RVHFALLDQM KLMHTSGMTK DQIKETVLIR VSEIIENFEP EKDSKSS // ID A9A259_NITMS Unreviewed; 148 AA. AC A9A259; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ABX12472.1}; GN OrderedLocusNames=Nmar_0576 {ECO:0000313|EMBL:ABX12472.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12472.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12472.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12472.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12472.1; -; Genomic_DNA. DR ProteinModelPortal; A9A259; -. DR PRIDE; A9A259; -. DR EnsemblBacteria; ABX12472; ABX12472; Nmar_0576. DR KEGG; nmr:Nmar_0576; -. DR eggNOG; arCOG00518; Archaea. DR eggNOG; COG3576; LUCA. DR HOGENOM; HOG000108080; -. DR KO; K07006; -. DR OMA; FETMASH; -. DR BioCyc; NMAR436308:GI3J-599-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004733; F:pyridoxamine-phosphate oxidase activity; IEA:InterPro. DR Gene3D; 2.30.110.10; -; 1. DR InterPro; IPR011576; Pyridox_Oxase_FMN-bd. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR Pfam; PF01243; Pyridox_oxidase; 1. DR SUPFAM; SSF50475; SSF50475; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 90 Pyridox_oxidase. FT {ECO:0000259|Pfam:PF01243}. SQ SEQUENCE 148 AA; 16672 MW; 5DD30C79AC2B5F09 CRC64; MFEITEEIKN FLNLQKLGYV ATVSSDGMPN ISPKGTIIGW SKNQLAFADI RSPDTMKNLQ TNPNVEINVI DPLLRKGFLF KGSAKILEDS TIYDEILNYY RNNGIKSPIN SIVLVDVAEI SEVTSPLYDM GIGEEEIKSK WKKHFDSL // ID A9A4R9_NITMS Unreviewed; 771 AA. AC A9A4R9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 51. DE SubName: Full=Aminoacyl-tRNA synthetase class Ia {ECO:0000313|EMBL:ABX13373.1}; GN OrderedLocusNames=Nmar_1477 {ECO:0000313|EMBL:ABX13373.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13373.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13373.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13373.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13373.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4R9; -. DR STRING; 436308.Nmar_1477; -. DR EnsemblBacteria; ABX13373; ABX13373; Nmar_1477. DR KEGG; nmr:Nmar_1477; -. DR eggNOG; arCOG00808; Archaea. DR eggNOG; COG0525; LUCA. DR HOGENOM; HOG000020095; -. DR KO; K01873; -. DR OMA; CETAISQ; -. DR BioCyc; NMAR436308:GI3J-1514-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004832; F:valine-tRNA ligase activity; IEA:InterPro. DR GO; GO:0006438; P:valyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR Gene3D; 3.90.740.10; -; 1. DR InterPro; IPR002300; aa-tRNA-synth_Ia. DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit. DR InterPro; IPR002303; Valyl-tRNA_ligase. DR PANTHER; PTHR11946:SF5; PTHR11946:SF5; 1. DR Pfam; PF08264; Anticodon_1; 1. DR Pfam; PF00133; tRNA-synt_1; 1. DR PRINTS; PR00986; TRNASYNTHVAL. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF50677; SSF50677; 1. DR TIGRFAMs; TIGR00422; valS; 1. PE 4: Predicted; KW Aminoacyl-tRNA synthetase {ECO:0000313|EMBL:ABX13373.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX13373.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 559 tRNA-synt_1. {ECO:0000259|Pfam:PF00133}. FT DOMAIN 607 741 Anticodon_1. {ECO:0000259|Pfam:PF08264}. SQ SEQUENCE 771 AA; 89240 MW; A41245F09FB55BFF CRC64; MDPKITEKAW NPELEAQVLK KWQDSDLYKF TPTDDNYTID TPPPYPSGRP WHIGAAAHYS QIDMIARTAR MNGKNVYFPI GIDRNGLPVE FYTEKKHNIR MRETDRGEFL DLCREALDDL EEEMVLIMTN LGLSGDLKNH YRTDSEEYRA LTQSTFIKLW KEGKIVLATR PNNYDWVSGT TIADAEIAYQ DLMTKLVHMK FKIKDMDKEI IIASTRPELL CACRTIIVNP EDERYAPFVG SKVVVPITGA EVEIKTHHSA QQDFGSGAVM VCSYGDQNDV ALFREMGLEE IVAIGLDGRM TEAAGEYAGL KPKQAREKII ADLESKGFVE KIEEINHRTP ISERSKIPIE IIPMEEYYLK QKDSIEKMRK LGSEITFYPS MHKQILMNWL DSISIDWPIS RRRYYGTEIP IWYCSSCNEP HVPEPGKYYQ PWKEKCPIEK CTKCGNGEFT GEDRTFDTWM DSSVSPLFVT KYDKDSEFFE KTYPTSLRPQ AKDIVRTWLY YTLLRCDMLT GKKPWTEAWI MGYGLDEKGM KMSKSKGNAI DPLPVIEKFG ADTFRFWSAS EINHGYDFRC NEQKIESTKK FLSKLWNVSR FLSSFPVIKE GKPTTVDKWI LSELNNLIKD CKKGYDEYNF FVPAIAIREF TWNLFAAHYI EMVKKRAYGE GFSEEERDAA IYTLHKVLST VLKLLAPITP FITEHLWQTL YSETSIHTER QAESEKVEDY SKTTEEVVQF NSKVWNEKKA KELSLKDSIA VEVPESLSEF KKDLQSMHNL E // ID A9A4M4_NITMS Unreviewed; 216 AA. AC A9A4M4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ABX13002.1}; GN OrderedLocusNames=Nmar_1106 {ECO:0000313|EMBL:ABX13002.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13002.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13002.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13002.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13002.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M4; -. DR STRING; 436308.Nmar_1106; -. DR EnsemblBacteria; ABX13002; ABX13002; Nmar_1106. DR KEGG; nmr:Nmar_1106; -. DR eggNOG; arCOG00520; Archaea. DR eggNOG; COG3467; LUCA. DR HOGENOM; HOG000106676; -. DR KO; K07005; -. DR OMA; PTQFFFS; -. DR BioCyc; NMAR436308:GI3J-1137-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 2.30.110.10; -; 1. DR InterPro; IPR024747; Pyridox_Oxase-rel. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR Pfam; PF12900; Pyridox_ox_2; 1. DR SUPFAM; SSF50475; SSF50475; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 216 AA; 24717 MW; 75FB965E849977C1 CRC64; MQILIDLKLV GRLEIKSYEK IKEFLSQEHV GRIASIDENG YPQIIPMNFV FANDAIYMHS YTRGEKLDNI SRNDKVGFEV DRELEFLPSY FSHPTDASQA DTLYISVVIK GKGVFVEDDD EKAFGLNELM KKYQPEGNYI PIQNNDLVLD EVAVIKVIPV SIKGKYKIGQ QLRSDSRQIL AQKILERKSP TSKQTLKIMG FEETPDGLKM VDEPVW // ID A9A255_NITMS Unreviewed; 421 AA. AC A9A255; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12468.1}; GN OrderedLocusNames=Nmar_0572 {ECO:0000313|EMBL:ABX12468.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12468.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12468.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12468.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12468.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0572; -. DR EnsemblBacteria; ABX12468; ABX12468; Nmar_0572. DR KEGG; nmr:Nmar_0572; -. DR eggNOG; arCOG04531; Archaea. DR eggNOG; COG1914; LUCA. DR HOGENOM; HOG000287672; -. DR OMA; MCMFGTT; -. DR BioCyc; NMAR436308:GI3J-595-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 35 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 109 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 121 141 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 148 166 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 186 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 233 254 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 282 303 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 331 352 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 358 382 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 394 417 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 421 AA; 46546 MW; 50DFA2C8BBFCFE20 CRC64; MGSKLSHFSK TAGPGILFAC TAIGVSHLIQ STRAGADFGL MILGFVVLAT VLKYPFFEFG SRYANSTQTS IIDGYKKLGK PALWMYFIIT ICSMFFVTGA VGFVTAGFFE NLFGIDFLEE FTVVILFAIC VGILAVGKYN VLDSLIKIIA IVLLVSTVSA FLLALYNGPI EEVSGFAPKE LWNLTGIFFL LALMGWMPAP LDLSSWNSLW TLERSKQTSY RPKLKETLLE FRLAYLITGI LAVMFVVLGT FIFYGSGEEL PNSNSSFAHK VVTLYTQTIG EWSYVVIAAS AFSVMFGTII ALFDGYSRSL QRTVELIFSK KEEAIRTKFK TFYVIFLIVL SVGSLIVIFQ FAGNLKELVD FATVLSFVVA PVIAIFNFRL VTGKYLPKES QPSTLLRILS FAGIVFLSGF AIFFLAMKFL S // ID A9A3W1_NITMS Unreviewed; 99 AA. AC A9A3W1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABX13661.1}; GN OrderedLocusNames=Nmar_1765 {ECO:0000313|EMBL:ABX13661.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13661.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13661.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13661.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13661.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3W1; -. DR STRING; 436308.Nmar_1765; -. DR EnsemblBacteria; ABX13661; ABX13661; Nmar_1765. DR KEGG; nmr:Nmar_1765; -. DR eggNOG; arCOG00291; Archaea. DR eggNOG; COG1145; LUCA. DR HOGENOM; HOG000105738; -. DR OMA; FWMRPMD; -. DR BioCyc; NMAR436308:GI3J-1812-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR Pfam; PF12838; Fer4_7; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 37 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 44 73 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 99 AA; 10959 MW; DF9AEB6F3DE5E3D3 CRC64; MPVGIIPDIS EQMCIGCALC VEICTTLGPD VLRVKPVEGW KRGKAFVFYP ERCISDGACI GVCPTKAIFW MRPMDFTVGQ PVPLHKDSVF VKGWTELID // ID A9A4M6_NITMS Unreviewed; 79 AA. AC A9A4M6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13004.1}; GN OrderedLocusNames=Nmar_1108 {ECO:0000313|EMBL:ABX13004.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13004.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13004.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13004.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13004.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1108; -. DR EnsemblBacteria; ABX13004; ABX13004; Nmar_1108. DR KEGG; nmr:Nmar_1108; -. DR eggNOG; arCOG10576; Archaea. DR eggNOG; ENOG4110ZV8; LUCA. DR BioCyc; NMAR436308:GI3J-1139-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 16 39 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 79 AA; 9080 MW; FA202C42413FA29D CRC64; MNIMDDDLPE SVKKCLDILE ENVEILANLE LELEDEKENA LVPDMELHQL YDMTEDVAES AKLKRAESNF AQRQAEDSL // ID A9A2S9_NITMS Unreviewed; 127 AA. AC A9A2S9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13606.1}; GN OrderedLocusNames=Nmar_1710 {ECO:0000313|EMBL:ABX13606.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13606.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13606.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13606.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13606.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1710; -. DR EnsemblBacteria; ABX13606; ABX13606; Nmar_1710. DR KEGG; nmr:Nmar_1710; -. DR eggNOG; arCOG03681; Archaea. DR eggNOG; ENOG410Y3F4; LUCA. DR OMA; ELREFMI; -. DR BioCyc; NMAR436308:GI3J-1755-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 127 AA; 14181 MW; AD620BDA000EB26F CRC64; MPFDEIEVPK ELREFMIDGA EETVLGQKNG ALKQYRYGNL HIREYDDKFL VHTDKIDPRK DPIGHLVYDA PEVLIGLACG IFGGSKIAKS VFNNNSKKLS LTSGLISSVL SGYIGYVASK KIKDYLE // ID A9A5C7_NITMS Unreviewed; 228 AA. AC A9A5C7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 49. DE SubName: Full=Shwachman-Bodian-Diamond syndrome protein {ECO:0000313|EMBL:ABX12326.1}; GN OrderedLocusNames=Nmar_0430 {ECO:0000313|EMBL:ABX12326.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12326.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12326.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12326.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12326.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C7; -. DR STRING; 436308.Nmar_0430; -. DR EnsemblBacteria; ABX12326; ABX12326; Nmar_0430. DR KEGG; nmr:Nmar_0430; -. DR eggNOG; arCOG04187; Archaea. DR eggNOG; COG1500; LUCA. DR HOGENOM; HOG000229540; -. DR KO; K14574; -. DR OMA; AVNPQMD; -. DR BioCyc; NMAR436308:GI3J-448-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0042256; P:mature ribosome assembly; IEA:InterPro. DR Gene3D; 3.30.1250.10; -; 1. DR InterPro; IPR009022; EFG_III-V. DR InterPro; IPR018978; Ribosome_mat_SBDS_C. DR InterPro; IPR019783; Ribosome_mat_SBDS_N. DR InterPro; IPR002140; Sdo1/SBDS. DR Pfam; PF01172; SBDS; 1. DR Pfam; PF09377; SBDS_C; 1. DR SUPFAM; SSF54980; SSF54980; 1. DR SUPFAM; SSF89895; SSF89895; 1. DR TIGRFAMs; TIGR00291; RNA_SBDS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 90 SBDS. {ECO:0000259|Pfam:PF01172}. FT DOMAIN 97 191 SBDS_C. {ECO:0000259|Pfam:PF09377}. SQ SEQUENCE 228 AA; 25422 MW; FDBACD14E93FC7D2 CRC64; MADVTVARFS FEGEKFEILV KPDPALEYKL GKKKDISAIL VSEDIYTDSG KGTKPSTEKL LKAFKTEDQT EIAQIIMQKG DLNLTTDQRR KMIEDKKKQI VAYIAKTYVD PKTHLPHPPL RVEQAMKDGR VSVDPQKSVD EQVKDIVDKL RSIIALKSEN LQLEIIIPAQ YASQSYAVLK SVGSLKKEEW QNNGSLKAIL EIPAAARPNV IDRLGSITKG SASVEVMQ // ID A9A1T4_NITMS Unreviewed; 247 AA. AC A9A1T4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Sugar nucleotidyltransferase-like protein {ECO:0000313|EMBL:ABX12055.1}; GN OrderedLocusNames=Nmar_0157 {ECO:0000313|EMBL:ABX12055.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12055.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12055.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12055.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12055.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T4; -. DR STRING; 436308.Nmar_0157; -. DR EnsemblBacteria; ABX12055; ABX12055; Nmar_0157. DR KEGG; nmr:Nmar_0157; -. DR eggNOG; arCOG00673; Archaea. DR eggNOG; COG1213; LUCA. DR OMA; CAREHLE; -. DR BioCyc; NMAR436308:GI3J-159-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR025877; MobA-like_NTP_Trfase. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF12804; NTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12055.1}. FT DOMAIN 3 114 NTP_transf_3. {ECO:0000259|Pfam:PF12804}. SQ SEQUENCE 247 AA; 28200 MW; 524E0A173B1BB587 CRC64; MKVIIIAAGK GQRISKEFKE IPKSLIPVNG KTILERQIKA FESNNISEII VISGKHNQFD NKGMKIVKDF ENEKHDILGS LMVAKNFLQG EVIILYSDII FDENIIHQIL NTTKDIAIAI DLDWKKSYEG RTEHPFSEAE NVLLDKKNNI VEIKKNIQST SNIVGEFLGI IKMSEHGTKV FLEKIDYLQK NHTGKFHNAV SLEKGYLTDM IQELINNSIQ VSPIFISGKW CEIDTKQDLN RAEELFK // ID A9A3P2_NITMS Unreviewed; 626 AA. AC A9A3P2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 58. DE RecName: Full=Type 2 DNA topoisomerase 6 subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; DE EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00322}; DE AltName: Full=Type II DNA topoisomerase VI subunit B {ECO:0000256|HAMAP-Rule:MF_00322}; GN Name=top6B {ECO:0000256|HAMAP-Rule:MF_00322}; GN OrderedLocusNames=Nmar_1408 {ECO:0000313|EMBL:ABX13304.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13304.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13304.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13304.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Relaxes both positive and negative superturns and CC exhibits a strong decatenase activity. {ECO:0000256|HAMAP- CC Rule:MF_00322}. CC -!- CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining CC of double-stranded DNA. {ECO:0000256|HAMAP-Rule:MF_00322}. CC -!- SUBUNIT: Homodimer. Heterotetramer of two Top6A and two Top6B CC chains. {ECO:0000256|HAMAP-Rule:MF_00322}. CC -!- SIMILARITY: Belongs to the TOP6B family. {ECO:0000256|HAMAP- CC Rule:MF_00322}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13304.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3P2; -. DR STRING; 436308.Nmar_1408; -. DR EnsemblBacteria; ABX13304; ABX13304; Nmar_1408. DR KEGG; nmr:Nmar_1408; -. DR eggNOG; arCOG01165; Archaea. DR eggNOG; ENOG4102U9P; Archaea. DR eggNOG; COG1389; LUCA. DR HOGENOM; HOG000225919; -. DR KO; K03167; -. DR OMA; AIVNPHA; -. DR BioCyc; NMAR436308:GI3J-1443-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003918; F:DNA topoisomerase type II (ATP-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006265; P:DNA topological change; IEA:UniProtKB-HAMAP. DR GO; GO:0006268; P:DNA unwinding involved in DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR HAMAP; MF_00322; Top6B; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR010979; Ribosomal_S13-like_H2TH. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR005734; TopoVI_B. DR InterPro; IPR015320; TopoVI_B_transducer. DR PANTHER; PTHR10871:SF4; PTHR10871:SF4; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF09239; Topo-VIb_trans; 1. DR ProDom; PD013790; TopoVI_B_transducer; 1. DR SMART; SM00387; HATPase_c; 1. DR SUPFAM; SSF46946; SSF46946; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55874; SSF55874; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00322}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00322}; KW Isomerase {ECO:0000256|HAMAP-Rule:MF_00322}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00322}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Topoisomerase {ECO:0000256|HAMAP-Rule:MF_00322}. FT DOMAIN 28 153 HATPase_c. {ECO:0000259|SMART:SM00387}. FT NP_BIND 101 102 ATP. {ECO:0000256|HAMAP-Rule:MF_00322}. FT BINDING 43 43 ATP. {ECO:0000256|HAMAP-Rule:MF_00322}. FT BINDING 80 80 ATP. {ECO:0000256|HAMAP-Rule:MF_00322}. FT BINDING 532 532 ATP. {ECO:0000256|HAMAP-Rule:MF_00322}. SQ SEQUENCE 626 AA; 70800 MW; 6957ED17F1789838 CRC64; MSSIKEKFNQ ISPSEFFYSN RDLAGFSNPT RSLYTAVREF VENALDACDQ KGILPDVHLT IKAVEPDKPD PKPYILTVKD NGPGVDAKHI PLAFGTVLYG SKFGLKQARG MFGLGATMAI LYGQITTNKP VIVKSCADGQ TQNQFEILLD IQKNKPVIVK HNTKEASKKG LSVSICLEGD YSKAGNKIRD YVYETSLITP YATITFDDPK GQKFQHTRFV KEIPPPPTII RPHPHGIDVE RIRRMIVESQ FEIPTIDDVM IEKVRKDLGL SKQNLSFTAI MTKAKKKWKN LSRQVRVVIA LLSFLKMDFE KLSKIRIEDL DVPNKKLHYW DFGDSQSKTV DMDPESQYYK QLTNTVQGEP LTTFLTKRFQ RVGPTTAVKF AEFAKFKPEK RMGTLTNQEL VNLSDALQKF DDFMAPDSSC LAPLGESPLE KGIKKFFNPD FVAVVQRPAS AYSGFPFIVE MGIAYGGDIK SGGPHVYRYA NRIPLLYDEG SDVVLKVVND TDWGRYKVKG DPPFIIVSHI CSTRIPYKTA GKENVADRQE IERELRLGLQ FLSRKLAAFM SKRGQAEMAK KRANLYAKYI PMIAEFCTEL AGKKKEPNYK KILEELEPVE IKTEKTIEEE KPIESK // ID A9A388_NITMS Unreviewed; 109 AA. AC A9A388; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 33. DE SubName: Full=Sjogrens syndrome scleroderma autoantigen 1 {ECO:0000313|EMBL:ABX12517.1}; GN OrderedLocusNames=Nmar_0621 {ECO:0000313|EMBL:ABX12517.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12517.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12517.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12517.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12517.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0621; -. DR EnsemblBacteria; ABX12517; ABX12517; Nmar_0621. DR KEGG; nmr:Nmar_0621; -. DR eggNOG; arCOG00578; Archaea. DR eggNOG; COG1645; LUCA. DR KO; K07143; -. DR OMA; SEPCPYC; -. DR BioCyc; NMAR436308:GI3J-645-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR009563; SSSCA1. DR Pfam; PF06677; Auto_anti-p27; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 109 AA; 12239 MW; 7E155AE334785BDC CRC64; MSKDLTKKAA EMLLQGATLL SEPCPYCKGV RVMKDGHALC ISCGREPEKK EIPVVNQKEI KSSLSETLEK KLAVLSKELE EEKDHTKQQE ILNSINSLLE AMDKIKNKQ // ID A9A4W0_NITMS Unreviewed; 151 AA. AC A9A4W0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13414.1}; GN OrderedLocusNames=Nmar_1518 {ECO:0000313|EMBL:ABX13414.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13414.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13414.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13414.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13414.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4W0; -. DR STRING; 436308.Nmar_1518; -. DR EnsemblBacteria; ABX13414; ABX13414; Nmar_1518. DR KEGG; nmr:Nmar_1518; -. DR eggNOG; arCOG04405; Archaea. DR eggNOG; ENOG411245K; LUCA. DR OMA; NWEYTEN; -. DR BioCyc; NMAR436308:GI3J-1560-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007374; ASCH_domain. DR InterPro; IPR015947; PUA-like_domain. DR Pfam; PF04266; ASCH; 1. DR SUPFAM; SSF88697; SSF88697; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 85 ASCH. {ECO:0000259|Pfam:PF04266}. SQ SEQUENCE 151 AA; 17811 MW; ECB76A8CC10D8CAD CRC64; MKCLSVSQPF AELIILGKKT IELRKWNTNY RGELLIHSPL KIRKEDAKRL KIDKKFVTGA IVGKVEIYDV KKYDSQKQVK SDQKFHFASK NFHDRTYGFL LKNAKTFRVP IPYKGQLGLF EVKLPKTKIK NKEIVSDIID EEYRYQWIGH H // ID A9A443_NITMS Unreviewed; 368 AA. AC A9A443; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=ABC-3 protein {ECO:0000313|EMBL:ABX12227.1}; GN OrderedLocusNames=Nmar_0331 {ECO:0000313|EMBL:ABX12227.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12227.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12227.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12227.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12227.1; -; Genomic_DNA. DR ProteinModelPortal; A9A443; -. DR STRING; 436308.Nmar_0331; -. DR EnsemblBacteria; ABX12227; ABX12227; Nmar_0331. DR KEGG; nmr:Nmar_0331; -. DR eggNOG; arCOG01006; Archaea. DR eggNOG; COG1108; LUCA. DR HOGENOM; HOG000181428; -. DR KO; K11709; -. DR OMA; IAMFICP; -. DR BioCyc; NMAR436308:GI3J-346-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; IEA:InterPro. DR Gene3D; 1.10.3470.10; -; 1. DR InterPro; IPR001626; ABC_3. DR InterPro; IPR029022; ABC_BtuC-like. DR Pfam; PF00950; ABC-3; 1. DR SUPFAM; SSF81345; SSF81345; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 112 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 164 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 176 200 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 206 225 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 232 251 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 257 277 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 368 AA; 39644 MW; 715AA2608FFFD543 CRC64; MIEISNDLII IGTAVLVAAN CASIGTFLVL RQMAMMSDAI SHAVLLGIVI AVFMVGGRET IPVIVGGVLS GILTVSIVEM LYRTGKLKQD SSIGIVFPFL FAIGVILVTQ AGNVHIDAQH VLYGSIEFVP FDTLYLDEIN IGSKSLWVLG VLAIANISFI AILYKELKIS TFDASVAVSV GLMPMLIHYL LMIMVATTAV VAFESVGAIL VIAFFIVPAS GAYLLTDRLS HMIALSVTLG TISAIAGYLF AVLLDVSIAG SMATIAGAIF GLIWVFAPNR GLISRWRRIT KQRFEIDLGI VLTFIQDELS ANRQVSTSTL SNALGWTIDY SKKLSEFIQE KKFIEKDVSG NLILTVLGQK KAKNYSTT // ID A9A2W5_NITMS Unreviewed; 115 AA. AC A9A2W5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=DUTPase {ECO:0000313|EMBL:ABX13642.1}; GN OrderedLocusNames=Nmar_1746 {ECO:0000313|EMBL:ABX13642.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13642.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13642.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13642.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13642.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2W5; -. DR STRING; 436308.Nmar_1746; -. DR EnsemblBacteria; ABX13642; ABX13642; Nmar_1746. DR KEGG; nmr:Nmar_1746; -. DR eggNOG; arCOG08766; Archaea. DR eggNOG; ENOG4111TD0; LUCA. DR HOGENOM; HOG000109048; -. DR OMA; KWWAKYQ; -. DR BioCyc; NMAR436308:GI3J-1793-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR014871; dUTPase/dCTP_pyrophosphatase. DR Pfam; PF08761; dUTPase_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 13644 MW; 2F0FF41FD05981E7 CRC64; MSQEVTEDRL DTIFQLQKGL SEMMKLDRYP KDAEGRVSAL STAIMHEAVE LQRTTNWKWW KTPTKFNEAE AREELIDIWH FVVQASLELD LTPDDIVAEY KKKNEINRER QRNGY // ID A9A3E6_NITMS Unreviewed; 136 AA. AC A9A3E6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=CoA-binding domain protein {ECO:0000313|EMBL:ABX12878.1}; GN OrderedLocusNames=Nmar_0982 {ECO:0000313|EMBL:ABX12878.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12878.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12878.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12878.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12878.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3E6; -. DR STRING; 436308.Nmar_0982; -. DR EnsemblBacteria; ABX12878; ABX12878; Nmar_0982. DR KEGG; nmr:Nmar_0982; -. DR eggNOG; arCOG04227; Archaea. DR eggNOG; COG1832; LUCA. DR HOGENOM; HOG000004470; -. DR KO; K06929; -. DR OMA; IEYPRLI; -. DR BioCyc; NMAR436308:GI3J-1010-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0048037; F:cofactor binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR003781; CoA-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF13380; CoA_binding_2; 1. DR SMART; SM00881; CoA_binding; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 14 106 CoA_binding. {ECO:0000259|SMART:SM00881}. SQ SEQUENCE 136 AA; 15340 MW; 438B78CF6BB43D0E CRC64; MEQDDHTDKQ IQDILSMKKV AVIGMSKNPS KAAHYVPRYL SENGFDITPV NPSADEILGK KCYDSVSDID EDVDIVDVFR PSDEVLPFVQ EAIKKKPKVI WLQEGIHNAE AEELARNAGI TVVFNRCMLA EHQRLC // ID A9A3Q8_NITMS Unreviewed; 69 AA. AC A9A3Q8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13320.1}; GN OrderedLocusNames=Nmar_1424 {ECO:0000313|EMBL:ABX13320.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13320.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13320.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13320.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13320.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1424; -. DR EnsemblBacteria; ABX13320; ABX13320; Nmar_1424. DR KEGG; nmr:Nmar_1424; -. DR eggNOG; arCOG08687; Archaea. DR eggNOG; ENOG41110SN; LUCA. DR HOGENOM; HOG000106521; -. DR OMA; DMSYGEY; -. DR BioCyc; NMAR436308:GI3J-1459-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 69 AA; 7583 MW; 668B8012264F9166 CRC64; MKIKCPKCKE DADLSPDFSF VKCGSCDLDM SYGEYVKFVA HNQATYSDIL GDYAGSTEGQ TAGSLDEWD // ID A9A2C6_NITMS Unreviewed; 134 AA. AC A9A2C6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ABX12837.1}; GN OrderedLocusNames=Nmar_0941 {ECO:0000313|EMBL:ABX12837.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12837.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12837.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12837.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12837.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2C6; -. DR STRING; 436308.Nmar_0941; -. DR EnsemblBacteria; ABX12837; ABX12837; Nmar_0941. DR KEGG; nmr:Nmar_0941; -. DR eggNOG; arCOG00516; Archaea. DR eggNOG; ENOG410YW42; LUCA. DR OMA; WVRRDPW; -. DR BioCyc; NMAR436308:GI3J-969-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004733; F:pyridoxamine-phosphate oxidase activity; IEA:InterPro. DR Gene3D; 2.30.110.10; -; 1. DR InterPro; IPR011576; Pyridox_Oxase_FMN-bd. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR Pfam; PF01243; Pyridox_oxidase; 1. DR SUPFAM; SSF50475; SSF50475; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 89 Pyridox_oxidase. FT {ECO:0000259|Pfam:PF01243}. SQ SEQUENCE 134 AA; 15653 MW; 33E117F659F21456 CRC64; MIEFSEKETE FLNSLEEARI ATSHEDIPHV KPVSFVLYKN AIIVATDYET RTYKNLKTNP NTSVTIDIYK SGGHKAIVIQ GQTEIIENGK EFQKFYEIFH EKFEWVRRDP WKENEAPFLK IIPSNKSSWG LNTK // ID A9A137_NITMS Unreviewed; 177 AA. AC A9A137; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11998.1}; GN OrderedLocusNames=Nmar_0098 {ECO:0000313|EMBL:ABX11998.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11998.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11998.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11998.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11998.1; -; Genomic_DNA. DR ProteinModelPortal; A9A137; -. DR STRING; 436308.Nmar_0098; -. DR EnsemblBacteria; ABX11998; ABX11998; Nmar_0098. DR KEGG; nmr:Nmar_0098; -. DR eggNOG; arCOG10136; Archaea. DR eggNOG; ENOG410YIEI; LUCA. DR KO; K05967; -. DR OMA; REIPPTE; -. DR BioCyc; NMAR436308:GI3J-100-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008253; F:5'-nucleotidase activity; IEA:InterPro. DR GO; GO:0009264; P:deoxyribonucleotide catabolic process; IEA:InterPro. DR Gene3D; 3.40.50.1000; -; 1. DR InterPro; IPR010708; 5'(3')-deoxyribonucleotidase. DR InterPro; IPR023214; HAD-like_dom. DR Pfam; PF06941; NT5C; 1. DR SUPFAM; SSF56784; SSF56784; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 177 AA; 20909 MW; 583CF600F574ABD2 CRC64; MKIALDVDGV LADVILSWLN YSNSIRQEIK KHEITDWDFW KKFEINRYDF YTELSSCWKN WTSIPPTEEN LTSITKNLSD IGQVDIVTAR ERSTDSFVKN WLKHYEISYD NYVSVIDGPM KADLDYDVFI DDSPLNALKF LQNKKKVILY SQPWNQHITE KNIHRISKLS EVIKKLN // ID A9A3Z2_NITMS Unreviewed; 120 AA. AC A9A3Z2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13692.1}; GN OrderedLocusNames=Nmar_1796 {ECO:0000313|EMBL:ABX13692.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13692.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13692.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13692.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13692.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1796; -. DR EnsemblBacteria; ABX13692; ABX13692; Nmar_1796. DR KEGG; nmr:Nmar_1796; -. DR eggNOG; arCOG08806; Archaea. DR eggNOG; ENOG4110ZRU; LUCA. DR HOGENOM; HOG000110218; -. DR OMA; AIQICIA; -. DR BioCyc; NMAR436308:GI3J-1844-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 120 AA; 13894 MW; C6987F2E4EE0FB1F CRC64; MSEFEGSNFN NIIRKIIKKS LFTERQIEII LNQKNLLELE FSISKGAYYR QVGQSREKLV SLFYSIILLR GLGIILPDDI DVISKLSEQI SVINESDIFP EREEEVINVI DRLVRQACSM // ID A9A4Z5_NITMS Unreviewed; 298 AA. AC A9A4Z5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11904.1}; GN OrderedLocusNames=Nmar_0004 {ECO:0000313|EMBL:ABX11904.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11904.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11904.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11904.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11904.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Z5; -. DR STRING; 436308.Nmar_0004; -. DR EnsemblBacteria; ABX11904; ABX11904; Nmar_0004. DR KEGG; nmr:Nmar_0004; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-4-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 298 AA; 33020 MW; C9966FC509A5F755 CRC64; MKLTITLLAL FIFSSGYILN ESFAEVSENQ VFLLEGSGFA VTEEQIKFSE IDFGLSSQDQ RGSTINFVIE DGFITLDEEE FIISELEGKF LREGRYIRIN GDIESSSGFD TTISFFGRLV AESKDAAVYG FTGRITTTDD TYKIIYTTKL SSLSKIDVTP TIEESQELSI RILKGASSQG VSDSYVGLTT SGSIRLGYFS DDRISIEPGT TITIINDDNV SHSILSGKEN YGDRHDPFDP DGRISTGDIA PGKSVNITFD EAGFYRLYDP DYPWMKIVAY VFPNSDNLIL RQGQNLGN // ID A9A2Y7_NITMS Unreviewed; 319 AA. AC A9A2Y7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12115.1}; GN OrderedLocusNames=Nmar_0219 {ECO:0000313|EMBL:ABX12115.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12115.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12115.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12115.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12115.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0219; -. DR EnsemblBacteria; ABX12115; ABX12115; Nmar_0219. DR KEGG; nmr:Nmar_0219; -. DR eggNOG; arCOG08635; Archaea. DR eggNOG; ENOG41111SJ; LUCA. DR BioCyc; NMAR436308:GI3J-224-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 319 AA; 35897 MW; 690B873389C997A3 CRC64; MQEIALILSS LAGVATAAAV RKMPRDKNQL LSLGASSHIK SQINSLKIEK DILTKTISRL YQADSEFSKI QKDKLLLKYQ HQLGIVLAKL EKLEQASKHP DLGPVGDGLI TLMDQKLSKL DDRLYELSSK MTTTKVEAPK VKEPEVKKGT KQSTSIKNTF NFEKPKETEP VTIPATKSRQ SFELTTLTNI SRKEPKFPLF EKEEKPIQKS MPQPKPIQTE LIKPKEEIVK EIVQPKPKVE DKIEIIQEVT SIPEPKVEPK PDINKEVAKI TEHKALPEPE VQKPEPTSAD DVDDDMDDLD KIKGDIMKVL SKLDQAEVE // ID A9A4R7_NITMS Unreviewed; 660 AA. AC A9A4R7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13371.1}; GN OrderedLocusNames=Nmar_1475 {ECO:0000313|EMBL:ABX13371.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13371.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13371.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13371.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13371.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1475; -. DR EnsemblBacteria; ABX13371; ABX13371; Nmar_1475. DR KEGG; nmr:Nmar_1475; -. DR eggNOG; ENOG411027Q; LUCA. DR OMA; YLELRIV; -. DR BioCyc; NMAR436308:GI3J-1512-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 660 AA; 77304 MW; D2DA55B95264CEC6 CRC64; MQIRNPFEEV NANNLDDDEI LDFWIKPEGI FNKQLEGIKL TGLTPLFLFG GRGTGKTTVL KYMSFDLQQK EFLKKNTDMK NFLTKNNFIG IYHRFDGPQL DAFNAGPDDR KCLEAFRFFI ELVLSQNFLW IVEKLLENKS ITSKFNEKTL CANISELIFG KKITSLSTIS KIRKKLGTIQ YSLEKARDKS AIDGKEIDIK NIIPRGRLIF DLQNEITKTI QELKNIKILY LFDEYENLTY DQQLLFNTLI KHRKFNVSFK IGSRLKGVKT YDTLTTEEYL REPADYRKII FENILNVSSL EYKKILIKIA EKRLRHIPEF KSKNLTDIKK ILGYSLSPEQ EANRIVNSSK DKRKHFYKIE KHKKTSISEK TISDLKCEGR PLIEKLNMML LNRNYPISKI KLMMNHFVSR NSKSSYHKQY KNLYDKNKVA LLFQLISDYR PREKQYSGFD TYVSLSSGII RTFLELCFHA FHFAIFAEQK NLLSGKPISH ELQNDAAKLM SQKYYEEIAV IPKGYGVFVA RLVDNIGSIL RGLHKDPLIS EPEPTYFTIE YENLDLKTRS VIDTAEQWSI LQRTISMKPK AKLQAHLTDF HINRMFCPKY SISYRRRGRT LITPSEIHIL TFGNEQEQKT IRELVSREKE VRKARKVRDQ GQPKIIDFLD // ID A9A2X9_NITMS Unreviewed; 119 AA. AC A9A2X9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12107.1}; GN OrderedLocusNames=Nmar_0211 {ECO:0000313|EMBL:ABX12107.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12107.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12107.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12107.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12107.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12107; ABX12107; Nmar_0211. DR KEGG; nmr:Nmar_0211; -. DR eggNOG; arCOG08025; Archaea. DR eggNOG; ENOG41111SZ; LUCA. DR HOGENOM; HOG000105006; -. DR OMA; PECGTTQ; -. DR BioCyc; NMAR436308:GI3J-216-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR026870; Zinc_ribbon_dom. DR Pfam; PF13240; zinc_ribbon_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 96 116 zinc_ribbon_2. FT {ECO:0000259|Pfam:PF13240}. SQ SEQUENCE 119 AA; 13099 MW; 598C77E1866B07C5 CRC64; MEVFDGKKAA QEYMSKHTLA FSTPELTLMR FAFWLGDSVP DPNNDGKGIP RMMTFLTEQD FEPVLIDDDK YEPSGAVKSS GLMGNAYTEQ KTDGKFCSEC GTSLSATAKF CPECGTTQE // ID A9A4A2_NITMS Unreviewed; 158 AA. AC A9A4A2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=PUA domain containing protein {ECO:0000313|EMBL:ABX12591.1}; GN OrderedLocusNames=Nmar_0695 {ECO:0000313|EMBL:ABX12591.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12591.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12591.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12591.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12591.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4A2; -. DR STRING; 436308.Nmar_0695; -. DR EnsemblBacteria; ABX12591; ABX12591; Nmar_0695. DR KEGG; nmr:Nmar_0695; -. DR eggNOG; arCOG00985; Archaea. DR eggNOG; COG2016; LUCA. DR HOGENOM; HOG000223987; -. DR KO; K07575; -. DR OMA; LVCIVEE; -. DR BioCyc; NMAR436308:GI3J-720-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR Gene3D; 2.30.130.10; -; 1. DR InterPro; IPR002478; PUA. DR InterPro; IPR015947; PUA-like_domain. DR InterPro; IPR016437; Transl_RNA-bd_prd. DR InterPro; IPR004521; Uncharacterised_CHP00451. DR PANTHER; PTHR22798; PTHR22798; 1. DR Pfam; PF01472; PUA; 1. DR PIRSF; PIRSF005067; Tma_RNA-bind_prd; 1. DR SMART; SM00359; PUA; 1. DR SUPFAM; SSF88697; SSF88697; 1. DR TIGRFAMs; TIGR00451; unchar_dom_2; 1. DR PROSITE; PS50890; PUA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 71 146 PUA. {ECO:0000259|PROSITE:PS50890}. SQ SEQUENCE 158 AA; 17936 MW; 58CFD9FF9CF9C871 CRC64; MKSNLISKSE TSALLKTVSE EWGIEFPKIK NLKVHQILDD AQIITGKGIK ILKINDDYLP FLSETETLEK FPSVTVDMGA VKFMCKGANL MRPGIRSFTE FEKDKLVCIV EESQHKFLAV GKSVVSSEEV EKMDKGEVLK NLHYISDKFW ETGKTIYD // ID A9A469_NITMS Unreviewed; 234 AA. AC A9A469; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12253.1}; GN OrderedLocusNames=Nmar_0357 {ECO:0000313|EMBL:ABX12253.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12253.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12253.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12253.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12253.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0357; -. DR EnsemblBacteria; ABX12253; ABX12253; Nmar_0357. DR KEGG; nmr:Nmar_0357; -. DR eggNOG; arCOG02579; Archaea. DR eggNOG; COG0727; LUCA. DR HOGENOM; HOG000106348; -. DR KO; K06940; -. DR OMA; PDCHNCC; -. DR BioCyc; NMAR436308:GI3J-373-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR005358; Puta_zinc/iron-chelating_dom. DR Pfam; PF03692; CxxCxxCC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 234 AA; 26979 MW; 3059FB539120C93B CRC64; MSQKEIEESL DLLQKDWDVD PTLRNFMLGK ITDVSDRPIK VKDVVFHVPY LNSEKKFILW KCFWPDCHNC CDRQGRLPLT SDDLITIGKG LKYQKPSEFI KNETLTVTYS EPGPSGQMTT MTTINLKRKT DETEADDGTH ISCRFLNDEG GCSMHPDRPG VCYLYPFSSW LENEKGKPRV HATYQFTGDC PGFYLAEDLE PMKEEFKEYS KIIYDYNMAS NRTNREGFGS VSFS // ID A9A297_NITMS Unreviewed; 198 AA. AC A9A297; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:ABX12808.1}; GN OrderedLocusNames=Nmar_0912 {ECO:0000313|EMBL:ABX12808.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12808.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12808.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12808.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12808.1; -; Genomic_DNA. DR ProteinModelPortal; A9A297; -. DR SMR; A9A297; 1-193. DR STRING; 436308.Nmar_0912; -. DR MEROPS; C26.959; -. DR EnsemblBacteria; ABX12808; ABX12808; Nmar_0912. DR KEGG; nmr:Nmar_0912; -. DR eggNOG; arCOG00086; Archaea. DR eggNOG; COG0512; LUCA. DR HOGENOM; HOG000025029; -. DR KO; K01658; -. DR OMA; PCSPDEA; -. DR BioCyc; NMAR436308:GI3J-940-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.880; -; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR InterPro; IPR006221; TrpG/PapA_dom. DR Pfam; PF00117; GATase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR00566; trpG_papA; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000313|EMBL:ABX12808.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12808.1}. FT DOMAIN 2 198 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. SQ SEQUENCE 198 AA; 21993 MW; BC9150F4D5886229 CRC64; MKFLIIDNYD SFVYNIAQYL GELGVDCDVI RNDKITLNEI QEKKYDAIII SPGPGTPEDK KYFGVCSEVI KDMGSSTPIL GVCLGHQGII DAFGGKVTNA GCVRHGKTSP VNHEDSKLFK DVKNPFRATR YHSLVGDKTI IPEVLKVTAT ASDDGEVMAI EHKDYLIQGV QFHPESIMTE DGKKILSNFI QQVKEKQK // ID A9A5K4_NITMS Unreviewed; 374 AA. AC A9A5K4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:ABX12715.1}; DE EC=2.3.1.47 {ECO:0000313|EMBL:ABX12715.1}; GN OrderedLocusNames=Nmar_0819 {ECO:0000313|EMBL:ABX12715.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12715.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12715.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12715.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12715.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5K4; -. DR STRING; 436308.Nmar_0819; -. DR EnsemblBacteria; ABX12715; ABX12715; Nmar_0819. DR KEGG; nmr:Nmar_0819; -. DR eggNOG; arCOG00113; Archaea. DR eggNOG; COG0156; LUCA. DR HOGENOM; HOG000221021; -. DR KO; K00639; -. DR OMA; FECENDI; -. DR BioCyc; NMAR436308:GI3J-846-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008710; F:8-amino-7-oxononanoate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 4: Predicted; KW Acyltransferase {ECO:0000313|EMBL:ABX12715.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12715.1}. FT DOMAIN 40 364 Aminotran_1_2. FT {ECO:0000259|Pfam:PF00155}. SQ SEQUENCE 374 AA; 42120 MW; 0D89B1B12A937F6E CRC64; MKKKLRFVDE ELHEIKQNNL YRKLRFGKIQ NEFITINGKK LLNLCSNDYL GLPITKLQTD QLQSSSRLVS GNDESYIKLE KELAKHKSQQ NSLIYPTGYM ANLGSISAIA KKGDLILSDE LNHASIIESC KLTDAKISIY KHNDMQDLHS KSKQKAQNKF IITEGIFSMD GDLSSLKQIT EIAEKTNAIT IVDDAHGDFV IGKDGKGTPN HFSVGKKIDL YISSLSKGLG SFGGYIAAQN NVIDLCVNKS KSFIYTSALP SLLVKHSLKR FKSNREKQRK ILEKNTKSLS KGLKEIGFEI NSKSQIIPII IGNEKSAMDF GKFLFDNGVF AQPIRYPTVP KNQARLRISV TAWLNDKDIE RTLEIFEKAY VKFC // ID A9A1A7_NITMS Unreviewed; 414 AA. AC A9A1A7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE RecName: Full=Cysteine desulfurase {ECO:0000256|RuleBase:RU004506}; DE EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506}; GN OrderedLocusNames=Nmar_0497 {ECO:0000313|EMBL:ABX12393.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12393.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12393.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12393.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the removal of elemental sulfur and selenium CC atoms from L-cysteine, L-cystine, L-selenocysteine, and L- CC selenocystine to produce L-alanine. CC {ECO:0000256|RuleBase:RU004506}. CC -!- CATALYTIC ACTIVITY: L-cysteine + acceptor = L-alanine + S- CC sulfanyl-acceptor. {ECO:0000256|RuleBase:RU004506}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|RuleBase:RU004504}; CC -!- SIMILARITY: Belongs to the class-V pyridoxal-phosphate-dependent CC aminotransferase family. Csd subfamily. CC {ECO:0000256|RuleBase:RU004506}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12393.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1A7; -. DR STRING; 436308.Nmar_0497; -. DR EnsemblBacteria; ABX12393; ABX12393; Nmar_0497. DR KEGG; nmr:Nmar_0497; -. DR eggNOG; arCOG00065; Archaea. DR eggNOG; COG0520; LUCA. DR HOGENOM; HOG000017511; -. DR KO; K11717; -. DR OMA; HGRHDVQ; -. DR BioCyc; NMAR436308:GI3J-517-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031071; F:cysteine desulfurase activity; IEA:UniProtKB-EC. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0006534; P:cysteine metabolic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000192; Aminotrans_V_dom. DR InterPro; IPR020578; Aminotrans_V_PyrdxlP_BS. DR InterPro; IPR010970; Cys_dSase_SufS. DR InterPro; IPR016454; Cysteine_dSase. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00266; Aminotran_5; 1. DR PIRSF; PIRSF005572; NifS; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR01979; sufS; 1. DR PROSITE; PS00595; AA_TRANSFER_CLASS_5; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU004506}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU004506}. FT DOMAIN 29 401 Aminotran_5. {ECO:0000259|Pfam:PF00266}. SQ SEQUENCE 414 AA; 46487 MW; B793DE5F43A442F4 CRC64; MQSTQSSFEN LRKDFPILER TVRDNKHLVY LDNASTTQKP NQVIDAITDY YQNHNANIHR AVYALAEEAT EAYEKTRDKI ANFVNIKDRQ EIIFVRGTTE AINLVAYAWG RPHISEGDII VTTEYEHHSN IVPWQLLTQE KRAKLEYIGM DDNGELILDD LDKHLATGKV KLVTFSLMSN VLGTITDAKK IIEKCKAAGV PTLVDGAQAV PHMKVDLEDL DCDFFAFSGH KMLGPTGIGV LWVRKSVLNT MSPFHGGGDM IREVHKYETT WNDLPYKFEA GTPNIADVVG FGAAIDYLTK IGMDNIREHE IELTKYAMEK LSNIKGLQIY GTKDVSKRGG VISFNFADVH PHDVAQIIDE EGIALRSGHH CAQVLMERLN VAATSRASFY IYNTKEDIDV LVNSLNTVAK VFKL // ID A9A4C5_NITMS Unreviewed; 455 AA. AC A9A4C5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 51. DE SubName: Full=Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX12614.1}; GN OrderedLocusNames=Nmar_0718 {ECO:0000313|EMBL:ABX12614.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12614.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12614.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12614.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12614.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0718; -. DR EnsemblBacteria; ABX12614; ABX12614; Nmar_0718. DR KEGG; nmr:Nmar_0718; -. DR eggNOG; arCOG00749; Archaea. DR eggNOG; COG1173; LUCA. DR HOGENOM; HOG000108478; -. DR KO; K02034; -. DR OMA; WRDITYW; -. DR BioCyc; NMAR436308:GI3J-744-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU363032}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363032}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 20 42 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 253 278 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 290 308 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 314 333 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 368 393 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 420 445 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 251 442 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 455 AA; 50371 MW; 2D7FC8C414FDE308 CRC64; MSSITPQEIK QEFLKSKIGI AGITILSILV TTSIIAIIAI PVETFQEWNN PGNWISYPKV AVPIWINIFM TEKIPEHKIL ENPHIQTNSE GEIMLSSHKF GINFDYEFFP NDFIYVFSSE YSESVLLQMS VTRPDGIKLE LSSTSLPYSH TKTVHSERIF STDETIKKNL LLQSDLFDFN LERLSAEDIV FSNTKTNEPL KGNYIFSVDT YSINSEIKSH ESKLIIGGKA FGMMGTDELR RDLAIGLLWG TPLALFIGLV VSIASVIMGL LYGVYAGFKG KKTDEVMMRF NDVIYALPAL PFLIILSVTI SNSIFVLVGF LMIFGWVGIA KVARSMSLQI KTKGYVDAAN MMGQKNSKIV LKHILPQLLP YAFASIAISV PAAITTEAGL SFLGLGDPSF PTWGHILHDA NTFGAAARGL WWWIMPPGVM IAIAGLAFVF IGNALDAIVN PKLKR // ID A9A3D5_NITMS Unreviewed; 304 AA. AC A9A3D5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 39. DE SubName: Full=PHP domain protein {ECO:0000313|EMBL:ABX12564.1}; GN OrderedLocusNames=Nmar_0668 {ECO:0000313|EMBL:ABX12564.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12564.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12564.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12564.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12564.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3D5; -. DR STRING; 436308.Nmar_0668; -. DR EnsemblBacteria; ABX12564; ABX12564; Nmar_0668. DR KEGG; nmr:Nmar_0668; -. DR eggNOG; arCOG00302; Archaea. DR eggNOG; COG0613; LUCA. DR HOGENOM; HOG000106060; -. DR KO; K07053; -. DR OMA; CHNSFSN; -. DR BioCyc; NMAR436308:GI3J-693-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR InterPro; IPR016195; Pol/histidinol_Pase-like. DR SUPFAM; SSF89550; SSF89550; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 304 AA; 34764 MW; 56250E0023461B26 CRC64; MPINAELHCH NSFSNFHVGH DEPPYDCDIT IRDQLERSYR LGLDAIFVTN HNTLDGYRQL LEYKNNHSKF KNIDVFPAEE ITTDTGAHVL AYGIHDVISP GLSLEEVIDE VRKQGGVSSA PHPFSLLDAL RDSAKKCDMV EVFNSNNVDI LSNARATKFA LDNNMIQVAG SDSHVLSTLG RCVNVIDSEN NLDDILFAMK HGKIEISQTG YAHQAETLDH LRYKINNSKE YLIDYISEHY PNAKWLLTLL LRIYDSNQNS HMWALFYKIA IYLMKRISHK INFQNQDPSF MKDRNLATMF KMAL // ID A9A481_NITMS Unreviewed; 143 AA. AC A9A481; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=UspA domain protein {ECO:0000313|EMBL:ABX12570.1}; GN OrderedLocusNames=Nmar_0674 {ECO:0000313|EMBL:ABX12570.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12570.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12570.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12570.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12570.1; -; Genomic_DNA. DR ProteinModelPortal; A9A481; -. DR STRING; 436308.Nmar_0674; -. DR EnsemblBacteria; ABX12570; ABX12570; Nmar_0674. DR KEGG; nmr:Nmar_0674; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR HOGENOM; HOG000238897; -. DR OMA; HEDIEQY; -. DR BioCyc; NMAR436308:GI3J-699-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006015; Universal_stress_UspA. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. DR PRINTS; PR01438; UNVRSLSTRESS. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 143 Usp. {ECO:0000259|Pfam:PF00582}. SQ SEQUENCE 143 AA; 15522 MW; 939040F31C9C21C7 CRC64; MVIKTKKILV PLDGSKNSIR GLDMAIHLAR QSQGVIVGLS VKSVPGIYAI HPLGFLDFNT SKEMKQILDD AKLRAAKKGI KLISKKLSGD PGYDIARFTN NKKNGIDLVV IGARGRSSAK ELFLGSVSNY VLHKSKKPVL VVK // ID A9A3W7_NITMS Unreviewed; 481 AA. AC A9A3W7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=Glutamine synthetase, type I {ECO:0000313|EMBL:ABX13667.1}; GN OrderedLocusNames=Nmar_1771 {ECO:0000313|EMBL:ABX13667.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13667.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13667.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13667.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the glutamine synthetase family. CC {ECO:0000256|RuleBase:RU000384}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13667.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3W7; -. DR STRING; 436308.Nmar_1771; -. DR EnsemblBacteria; ABX13667; ABX13667; Nmar_1771. DR KEGG; nmr:Nmar_1771; -. DR eggNOG; arCOG01909; Archaea. DR eggNOG; COG0174; LUCA. DR HOGENOM; HOG000005157; -. DR KO; K01915; -. DR OMA; SHASALC; -. DR BioCyc; NMAR436308:GI3J-1818-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004356; F:glutamate-ammonia ligase activity; IEA:InterPro. DR GO; GO:0006542; P:glutamine biosynthetic process; IEA:InterPro. DR GO; GO:0009399; P:nitrogen fixation; IEA:InterPro. DR Gene3D; 3.10.20.70; -; 1. DR Gene3D; 3.30.590.10; -; 1. DR InterPro; IPR008147; Gln_synt_b-grasp. DR InterPro; IPR014746; Gln_synth/guanido_kin_cat_dom. DR InterPro; IPR008146; Gln_synth_cat_dom. DR InterPro; IPR027303; Gln_synth_gly_rich_site. DR InterPro; IPR004809; Gln_synth_I. DR Pfam; PF00120; Gln-synt_C; 1. DR Pfam; PF03951; Gln-synt_N; 1. DR SMART; SM01230; Gln-synt_C; 1. DR SUPFAM; SSF54368; SSF54368; 1. DR TIGRFAMs; TIGR00653; GlnA; 1. DR PROSITE; PS00181; GLNA_ATP; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Phosphoprotein {ECO:0000256|PIRSR:PIRSR604809-50}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT MOD_RES 410 410 O-AMP-tyrosine. FT {ECO:0000256|PIRSR:PIRSR604809-50}. SQ SEQUENCE 481 AA; 53812 MW; 3253B5002DFACCFD CRC64; MNADQVLQTI QDEKIAFIDF WFVDIFGELH NVGMPSYAID KNSFVNGLEK LDASSIVGFK SVNNSDMILM PDPNSFKILP SDYDPGHRTN ARIFCDLYDG STDESSRYNR DSRGIAHKAS KKLGEFGFTH TNWGPEIEFF VFDTINVYPS PYAATHSYGG SGYSIESKES PWAKGNVSTA IDIKEGYYPS QPKDTLEGFR KDVCDDLYNH FGIKIEAEHH EVATSGQCEI NLVYDEMIQM ADNVIGVKNL VKVKAKRKNK VATFMPKPIF GDNASAMHTH QSLWNGDSNA MYDENDELAQ MSQTGRYYIG GILSHASALC AISNPTTNSY KRLVPGFEAP VNVCWGLANR SAAIRVPMYN RNQEKSKRLE YRVPDPTANI YLLEAALLLA GLDGIKNKID PGDPIEENVY KLSAEKKREY KIGSLPVSLK GALDSLGSDS KFLEEVFTKD FLNVYSELKY KEYVAFAQTP TAWEVSMYAD A // ID A9A3U1_NITMS Unreviewed; 344 AA. AC A9A3U1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Methyltransferase type 11 {ECO:0000313|EMBL:ABX13353.1}; GN OrderedLocusNames=Nmar_1457 {ECO:0000313|EMBL:ABX13353.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13353.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13353.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13353.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13353.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3U1; -. DR STRING; 436308.Nmar_1457; -. DR EnsemblBacteria; ABX13353; ABX13353; Nmar_1457. DR KEGG; nmr:Nmar_1457; -. DR eggNOG; arCOG01778; Archaea. DR eggNOG; ENOG410ZVI3; LUCA. DR HOGENOM; HOG000244751; -. DR OMA; STFICTP; -. DR BioCyc; NMAR436308:GI3J-1494-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR025714; Methyltranfer_dom. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF13847; Methyltransf_31; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13353.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13353.1}. FT DOMAIN 161 322 Methyltranfer_dom. FT {ECO:0000259|Pfam:PF13847}. SQ SEQUENCE 344 AA; 38314 MW; 002B8C3F083C7E39 CRC64; MPSFEDEMLD VMNKAAIALL LSVGHRTKLF DAMSKLEPST SQEIATAANL NERYVREWLG GLVTSKIIDY DPESQKYSLS KEKAEFLTRD GEYNFASSMQ WIPALAYVED HIVDCFEKGG GVSYEMFNRF HTVMAEESQQ TVLPALVKEI LPLIPTYEKL HSGLKVLDVG CGSGRAINLM AKSFPNSHFT GYDFSSEAIQ NAKNEAQKLG LSNVTFEKQD AANFDSENSF DVITAFDAIH DQANPDKVLE NIKKALKPDG IFMMQDIRAS SKLENNMNHS LAPYLYTVSC LHCMTVSLAL EGKGLGAMWG KELATQMLNE AGFSSVDVKE LPHDPINYYY IAKP // ID A9A2J6_NITMS Unreviewed; 84 AA. AC A9A2J6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13235.1}; GN OrderedLocusNames=Nmar_1339 {ECO:0000313|EMBL:ABX13235.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13235.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13235.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13235.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13235.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1339; -. DR EnsemblBacteria; ABX13235; ABX13235; Nmar_1339. DR KEGG; nmr:Nmar_1339; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR BioCyc; NMAR436308:GI3J-1373-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 84 AA; 9280 MW; 8684250237D2A25F CRC64; MLKKGMDTSY LLLTCAVNKN IEVANSIQQL SGVEEATPVH GAYDCIVKTE LPHDKLHKLV LSIIRPMRNV RSVITLHDAP STVI // ID A9A440_NITMS Unreviewed; 323 AA. AC A9A440; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=Periplasmic solute binding protein {ECO:0000313|EMBL:ABX12224.1}; GN OrderedLocusNames=Nmar_0328 {ECO:0000313|EMBL:ABX12224.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12224.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12224.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12224.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12224.1; -; Genomic_DNA. DR ProteinModelPortal; A9A440; -. DR STRING; 436308.Nmar_0328; -. DR EnsemblBacteria; ABX12224; ABX12224; Nmar_0328. DR KEGG; nmr:Nmar_0328; -. DR eggNOG; arCOG01005; Archaea. DR eggNOG; COG0803; LUCA. DR HOGENOM; HOG000180308; -. DR KO; K11707; -. DR OMA; KFKAVTT; -. DR BioCyc; NMAR436308:GI3J-343-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR GO; GO:0030001; P:metal ion transport; IEA:InterPro. DR InterPro; IPR006129; AdhesinB. DR InterPro; IPR006128; Lipoprotein_4. DR InterPro; IPR006127; ZnuA-like. DR Pfam; PF01297; ZnuA; 1. DR PRINTS; PR00691; ADHESINB. DR PRINTS; PR00690; ADHESNFAMILY. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 323 AA; 35056 MW; DAB7ECF8C74220A8 CRC64; MKKPIIITTV VIAAIIAGLS STVFTQNNSS DEIILSDAEQ SAGNTETIMV TTTTNVVTDL VENIGGDNVS VTGLMGPGVD PHLYRPSAND VKKLQDADIV FYNGLDLEGK MGDIFVKIGR EGTAVWAVSE NISHESLLSL DNTGHFDPHI WWDAELWMEA AKVVATGLSE YDPENSQAYE KNLQEYLTQL EELDQDSLEK MNSISQGQRV LVTAHDAFQY FGHAYGLEEM AIQGWSTDSE AGIREIQNLA DEISERKIKA VFVETTISPA TIEALTAAVQ DKGHDVVIGG KLFSDAIGEK GTSEGTYVGA FTHNVETIVN ALK // ID A9A4Y1_NITMS Unreviewed; 421 AA. AC A9A4Y1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Beta-lactamase domain protein {ECO:0000313|EMBL:ABX13435.1}; GN OrderedLocusNames=Nmar_1539 {ECO:0000313|EMBL:ABX13435.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13435.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13435.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13435.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13435.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Y1; -. DR STRING; 436308.Nmar_1539; -. DR EnsemblBacteria; ABX13435; ABX13435; Nmar_1539. DR KEGG; nmr:Nmar_1539; -. DR eggNOG; arCOG00541; Archaea. DR eggNOG; COG1236; LUCA. DR HOGENOM; HOG000244773; -. DR KO; K07577; -. DR OMA; ICESTYS; -. DR BioCyc; NMAR436308:GI3J-1581-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.60.15.10; -; 1. DR InterPro; IPR022712; Beta_Casp. DR InterPro; IPR001279; Metallo-B-lactamas. DR InterPro; IPR011108; RMMBL. DR Pfam; PF10996; Beta-Casp; 1. DR Pfam; PF16661; Lactamase_B_6; 1. DR Pfam; PF07521; RMMBL; 1. DR SMART; SM01027; Beta-Casp; 1. DR SMART; SM00849; Lactamase_B; 1. DR SUPFAM; SSF56281; SSF56281; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 224 Lactamase_B. {ECO:0000259|SMART:SM00849}. FT DOMAIN 229 339 Beta-Casp. {ECO:0000259|SMART:SM01027}. SQ SEQUENCE 421 AA; 47017 MW; 872A8E0422212F3F CRC64; MNVKVLGAAN EVGRSGFLVN CNGTNLLLDY GVLFGRRGTP PQYPLHVKPK DLDAIIITHA HLDHSGNVPS LFVSGNTDVY ATPPTFDLSK LLIEDMLKIE KNSHPFDLPE LNNMMRNAKE IGFKQKITKG NATFELRESG HVIGGSTVLV ESENKRLFYT GDIKTNGSRM LREMDLDIGE IDLLITESTY AMTEQKPRKE SEAELIEFAN EVMDRKGILF IPSFSVERSQ EIACILRNAN FKHRIIMDGM ALKVNEIMFK HPEYLRDPKI FSDAINRATS ITEHSERKRA MEEPCVVISP AGMLVGGNAV FYLQHLAFDD RNGIALVSYQ GDGTPGRKLL ETGKVSSRGK DINVTAQVKQ FEFSGHADRN ELFDMIKKIK GNPKVLTVHG DSESCDLFAQ EIHEKFGLET HSPAVNEEIP I // ID A9A2N6_NITMS Unreviewed; 343 AA. AC A9A2N6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE SubName: Full=Isocitrate dehydrogenase (NAD(+)) {ECO:0000313|EMBL:ABX13275.1}; DE EC=1.1.1.41 {ECO:0000313|EMBL:ABX13275.1}; GN OrderedLocusNames=Nmar_1379 {ECO:0000313|EMBL:ABX13275.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13275.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13275.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13275.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the isocitrate and isopropylmalate CC dehydrogenases family. {ECO:0000256|RuleBase:RU004443}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13275.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2N6; -. DR STRING; 436308.Nmar_1379; -. DR EnsemblBacteria; ABX13275; ABX13275; Nmar_1379. DR KEGG; nmr:Nmar_1379; -. DR eggNOG; arCOG01163; Archaea. DR eggNOG; COG0473; LUCA. DR HOGENOM; HOG000021113; -. DR KO; K00031; -. DR OMA; NTEGMYA; -. DR BioCyc; NMAR436308:GI3J-1414-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004449; F:isocitrate dehydrogenase (NAD+) activity; IEA:UniProtKB-EC. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR Gene3D; 3.40.718.10; -; 1. DR InterPro; IPR001804; Isocitrate/isopropylmalate_DH. DR InterPro; IPR024084; IsoPropMal-DH-like_dom. DR PANTHER; PTHR11835; PTHR11835; 1. DR Pfam; PF00180; Iso_dh; 1. DR SMART; SM01329; Iso_dh; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13275.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 343 AA; 37744 MW; 22283814BBED8DE3 CRC64; MSKKAAVMKG DGIGPEVVDS MLRVLKECNF QSELILCEAG SEQWDKNGRK DASYIPDVTM KILEETDCCF KGPTTTIPVP GAPRSVAVTL RQKFDLYANI RPTKTYDRLT PDRKLDCVCF REATEGLYTG VEAKITDDAA IAIRKITRQG SRRLIDSAVD WANKFNMKKM VAVTKRNILK QTDGIFWDET QKAVEGTDIE LSEIYIDNMA QQMVIATEQF NGAVLVSTNL FMDIISELAS ALVGSIGLIY SANIGDNYAM FEAAHGSAPQ FAGQNKVNPT ATVLSGAWMA DYLGERDVRD AIFAATEQVI NEGKAVTWDI GGDASTTQMT DAIITYAKEK LRK // ID A9A3M6_NITMS Unreviewed; 224 AA. AC A9A3M6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE RecName: Full=Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00351}; DE EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00351}; GN Name=flpA {ECO:0000256|HAMAP-Rule:MF_00351}; GN OrderedLocusNames=Nmar_1392 {ECO:0000313|EMBL:ABX13288.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13288.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13288.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13288.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in pre-rRNA and tRNA processing. Utilizes the CC methyl donor S-adenosyl-L-methionine to catalyze the site-specific CC 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site CC specificity is provided by a guide RNA that base pairs with the CC substrate. Methylation occurs at a characteristic distance from CC the sequence involved in base pairing with the guide RNA. CC {ECO:0000256|HAMAP-Rule:MF_00351}. CC -!- SUBUNIT: Interacts with nop5. Component of box C/D small CC ribonucleoprotein (sRNP) particles that contain rpl7ae, FlpA and CC nop5, plus a guide RNA. {ECO:0000256|HAMAP-Rule:MF_00351}. CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. CC Fibrillarin family. {ECO:0000256|HAMAP-Rule:MF_00351}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13288.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M6; -. DR STRING; 436308.Nmar_1392; -. DR EnsemblBacteria; ABX13288; ABX13288; Nmar_1392. DR KEGG; nmr:Nmar_1392; -. DR eggNOG; arCOG00078; Archaea. DR eggNOG; COG1889; LUCA. DR HOGENOM; HOG000106741; -. DR KO; K04795; -. DR OMA; MREFIDS; -. DR BioCyc; NMAR436308:GI3J-1427-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP. DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00351; RNA_methyltransf_FlpA; 1. DR InterPro; IPR000692; Fibrillarin. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01269; Fibrillarin; 1. DR PIRSF; PIRSF006540; Nop17p; 1. DR PRINTS; PR00052; FIBRILLARIN. DR SMART; SM01206; Fibrillarin; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13288.1}; KW Methyltransferase {ECO:0000256|HAMAP-Rule:MF_00351}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00351}; KW rRNA processing {ECO:0000256|HAMAP-Rule:MF_00351}; KW Serine/threonine-protein kinase {ECO:0000313|EMBL:ABX13288.1}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00351, KW ECO:0000313|EMBL:ABX13288.1}; KW tRNA processing {ECO:0000256|HAMAP-Rule:MF_00351}. FT REGION 81 82 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00351}. FT REGION 100 101 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00351}. FT REGION 126 127 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00351}. FT REGION 146 149 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00351}. SQ SEQUENCE 224 AA; 25599 MW; F115FE54FFA1DFB0 CRC64; MEEDNPSFFW IKSEGQQKLA TENLVPGNQV YKEKLIIKKG IEYRLWDPFR SKLAAAIMNE LEDFPFENKT KVLYLGASTG TTVSHISDIV GPSGIVFAVE HASRVARDFL DRVAAYRKNI MPILQDARKP KEYFSVFGKV DVVYVDIAQP DQTEIAIDNC EMFLKKDGYF FLVIKTRSID VTKSPKKIVE EETQKLKAKF EILQTIDLHP YDKDHAIVIA KFSG // ID A9A5D5_NITMS Unreviewed; 164 AA. AC A9A5D5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABX12334.1}; GN OrderedLocusNames=Nmar_0438 {ECO:0000313|EMBL:ABX12334.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12334.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12334.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12334.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12334.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5D5; -. DR STRING; 436308.Nmar_0438; -. DR EnsemblBacteria; ABX12334; ABX12334; Nmar_0438. DR KEGG; nmr:Nmar_0438; -. DR eggNOG; arCOG03032; Archaea. DR eggNOG; COG0457; LUCA. DR BioCyc; NMAR436308:GI3J-456-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR013105; TPR_2. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF07719; TPR_2; 1. DR Pfam; PF13181; TPR_8; 2. DR SMART; SM00028; TPR; 4. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 3. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 140 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 164 AA; 18383 MW; 0A2F93ADD00A2E8B CRC64; MMTETIESLL NSGQTLMNLG NPKDALVIYD KILAQDPKHI VALLKKGHIL GQLARYGDAI VQYDNVLSQE KNLLALLNKG LAHHYLGQVD VALGCYEQVL KEKPNNPTTL YNKASSLIKS GRVLEGIEIL SKVIELDFSF KEKAKFDIEF EGIRKLNEFK KIIS // ID A9A3P1_NITMS Unreviewed; 370 AA. AC A9A3P1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 56. DE RecName: Full=Type 2 DNA topoisomerase 6 subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; DE EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00132}; DE AltName: Full=Type II DNA topoisomerase VI subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; GN Name=top6A {ECO:0000256|HAMAP-Rule:MF_00132}; GN OrderedLocusNames=Nmar_1407 {ECO:0000313|EMBL:ABX13303.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13303.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13303.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13303.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Relaxes both positive and negative superturns and CC exhibits a strong decatenase activity. {ECO:0000256|HAMAP- CC Rule:MF_00132}. CC -!- CATALYTIC ACTIVITY: ATP-dependent breakage, passage and rejoining CC of double-stranded DNA. {ECO:0000256|HAMAP-Rule:MF_00132}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00132}; CC -!- SUBUNIT: Homodimer. Heterotetramer of two Top6A and two Top6B CC chains. {ECO:0000256|HAMAP-Rule:MF_00132}. CC -!- SIMILARITY: Belongs to the TOP6A family. {ECO:0000256|HAMAP- CC Rule:MF_00132}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13303.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3P1; -. DR STRING; 436308.Nmar_1407; -. DR EnsemblBacteria; ABX13303; ABX13303; Nmar_1407. DR KEGG; nmr:Nmar_1407; -. DR eggNOG; arCOG04143; Archaea. DR eggNOG; COG1697; LUCA. DR HOGENOM; HOG000225930; -. DR KO; K03166; -. DR OMA; WEEQIEL; -. DR BioCyc; NMAR436308:GI3J-1442-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003918; F:DNA topoisomerase type II (ATP-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000737; P:DNA catabolic process, endonucleolytic; IEA:InterPro. DR GO; GO:0006265; P:DNA topological change; IEA:UniProtKB-HAMAP. DR GO; GO:0006268; P:DNA unwinding involved in DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 1. DR HAMAP; MF_00132; Top6A; 1. DR InterPro; IPR002815; Spo11/TopoVI_A. DR InterPro; IPR013049; Spo11/TopoVI_A_N. DR InterPro; IPR004085; TopoVI_A. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR PANTHER; PTHR10848; PTHR10848; 1. DR Pfam; PF04406; TP6A_N; 1. DR PRINTS; PR01550; TOP6AFAMILY. DR PRINTS; PR01552; TPISMRASE6A. DR SUPFAM; SSF56726; SSF56726; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00132}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00132}; KW Isomerase {ECO:0000256|HAMAP-Rule:MF_00132}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00132}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00132}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00132}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Topoisomerase {ECO:0000256|HAMAP-Rule:MF_00132}. FT DOMAIN 82 146 TP6A_N. {ECO:0000259|Pfam:PF04406}. FT ACT_SITE 111 111 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00132}. FT METAL 204 204 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00132}. FT METAL 256 256 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00132}. SQ SEQUENCE 370 AA; 42033 MW; 6FA6DFBE83DE5F94 CRC64; MKASEKKAKE ISKKAKEKQK TILESLKNHG AKIYEDLENG QFPKFSIPSR SVSNIVYDKK LRQYILGNST ALRSAKNSAQ LRSFTQLMWL AFFANRLTQE KKSSTLRDVY YSSQAFAIEF DDQSESDNII VDLEAVTSRP REDFHIFPEE RSSIFGDLNI EYTIPGYEGK KMNLSNHPDG YSIGPSLTTA ELVDTSAEIV IAIEKGGLFT RFVEEQVDKK FKSIIINTGG QAPRSTRTLL KRLHDEMGLP VIILTDGDVY GEHIAMVIKS GSANAAHLRE LTVPDAKWVG VWATDIEKYK LPTIPMTESD IKRCYDLQKD PRYESGIWKK ELEVFLRLKR KAELEAFAKY GLTNITDKYL PQKLELAKSL // ID A9A200_NITMS Unreviewed; 318 AA. AC A9A200; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=Zinc finger TFIIB-type domain protein {ECO:0000313|EMBL:ABX12413.1}; GN OrderedLocusNames=Nmar_0517 {ECO:0000313|EMBL:ABX12413.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12413.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12413.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12413.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12413.1; -; Genomic_DNA. DR ProteinModelPortal; A9A200; -. DR STRING; 436308.Nmar_0517; -. DR EnsemblBacteria; ABX12413; ABX12413; Nmar_0517. DR KEGG; nmr:Nmar_0517; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; TIRNRCK; -. DR BioCyc; NMAR436308:GI3J-538-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.472.10; -; 2. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR013150; TFIIB_cyclin. DR InterPro; IPR013137; Znf_TFIIB. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF08271; TF_Zn_Ribbon; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SUPFAM; SSF47954; SSF47954; 2. DR PROSITE; PS51134; ZF_TFIIB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 35 TFIIB-type. FT {ECO:0000259|PROSITE:PS51134}. SQ SEQUENCE 318 AA; 35032 MW; F95D5D843CCE3B22 CRC64; MNALEEQNCP ECQATVVNDM QNGELICSGC GVVVADQVAD YGPETISSNL EDKMKLARAT GQTTYSQHDL GITTEIAIST KDFSGKTINH EVANQMHNLR KWQQRVRVSS PKERRLANVL TKMGETCDGL GLSKNVLETA SMIYRNLDGH VDVKGKSVVS ITAATIYMAC KQCDVVRSLE EIIRGICPPK DVKSKTKLAA RYYRTMVMEM GQLTAPVVTM DKYISKIANM TQTEVRVERL ALEIAEKTKD SSIADGKAPN GIAAAYLYVS SVLLGQNVLQ RDVSSIAGVT EVTIRNRCKE ILTNYKLKIT LRPSLAKY // ID A9A2Z2_NITMS Unreviewed; 449 AA. AC A9A2Z2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE SubName: Full=Phosphoglucosamine mutase {ECO:0000313|EMBL:ABX12120.1}; DE EC=5.4.2.10 {ECO:0000313|EMBL:ABX12120.1}; GN OrderedLocusNames=Nmar_0224 {ECO:0000313|EMBL:ABX12120.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12120.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12120.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12120.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the phosphohexose mutase family. CC {ECO:0000256|RuleBase:RU004326}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12120.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z2; -. DR STRING; 436308.Nmar_0224; -. DR EnsemblBacteria; ABX12120; ABX12120; Nmar_0224. DR KEGG; nmr:Nmar_0224; -. DR eggNOG; arCOG00767; Archaea. DR eggNOG; COG1109; LUCA. DR HOGENOM; HOG000268680; -. DR KO; K15778; -. DR OMA; DGDRSIF; -. DR BioCyc; NMAR436308:GI3J-230-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0008966; F:phosphoglucosamine mutase activity; IEA:UniProtKB-EC. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.30.310.50; -; 1. DR Gene3D; 3.40.120.10; -; 3. DR InterPro; IPR005844; A-D-PHexomutase_a/b/a-I. DR InterPro; IPR016055; A-D-PHexomutase_a/b/a-I/II/III. DR InterPro; IPR005845; A-D-PHexomutase_a/b/a-II. DR InterPro; IPR005846; A-D-PHexomutase_a/b/a-III. DR InterPro; IPR005843; A-D-PHexomutase_C. DR InterPro; IPR016066; A-D-PHexomutase_CS. DR InterPro; IPR005841; Alpha-D-phosphohexomutase_SF. DR InterPro; IPR024086; GlmM_arc-type. DR Pfam; PF02878; PGM_PMM_I; 1. DR Pfam; PF02879; PGM_PMM_II; 1. DR Pfam; PF02880; PGM_PMM_III; 1. DR Pfam; PF00408; PGM_PMM_IV; 1. DR PRINTS; PR00509; PGMPMM. DR SUPFAM; SSF53738; SSF53738; 3. DR SUPFAM; SSF55957; SSF55957; 1. DR TIGRFAMs; TIGR03990; Arch_GlmM; 1. DR PROSITE; PS00710; PGM_PMM; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12120.1}; KW Magnesium {ECO:0000256|RuleBase:RU004326}; KW Metal-binding {ECO:0000256|RuleBase:RU004326}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 130 PGM_PMM_I. {ECO:0000259|Pfam:PF02878}. FT DOMAIN 151 251 PGM_PMM_II. {ECO:0000259|Pfam:PF02879}. FT DOMAIN 256 364 PGM_PMM_III. {ECO:0000259|Pfam:PF02880}. FT DOMAIN 406 442 PGM_PMM_IV. {ECO:0000259|Pfam:PF00408}. SQ SEQUENCE 449 AA; 48860 MW; 84C6FBE8F0127CDC CRC64; MAKFFGTNGI RGVFGEDFTL EFIHDMTLAI GTYFKKGPIL IGYDGRDSSP TICKVVTSAL NSIGIDCNVA GIVPTPCLEF AVKKLGYSGG IMITASHNPP QYNGIKPAAN DGVEISREDE IVIEDIYLQK NWIKSATNWG ITKTEERAID VYLNGIASQV NSKLIESKHF KVVLDLGNGA QAVTAPNFCK LVNCETFLVN ENIDGAFPGR GSEPTPQNLS ELSKTVIQNN ADLGIAFDGD GDRSIFCDNK GNILTGDKSA LLLTKHILTN NPNSLVVTCL NSGSNIEVLA EEFDSKVIRT KVGSVEVSRK MVPTDALIGF EENGGFMFGK HNQVRDGCMT LALMLDLLTA SSNSLSDEIS NLPPSFTTKD KVSCSPENVP KLISTLKDEF PNSDTTDGIK INIDPRNWVM IRPSGTEPIV RVYAEAQSQE KLDDLMSEYL QKVKTIISR // ID A9A2T3_NITMS Unreviewed; 395 AA. AC A9A2T3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13610.1}; GN OrderedLocusNames=Nmar_1714 {ECO:0000313|EMBL:ABX13610.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13610.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13610.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13610.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13610.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1714; -. DR EnsemblBacteria; ABX13610; ABX13610; Nmar_1714. DR KEGG; nmr:Nmar_1714; -. DR eggNOG; arCOG02313; Archaea. DR eggNOG; COG4591; LUCA. DR HOGENOM; HOG000109280; -. DR KO; K09808; -. DR OMA; IAMINMI; -. DR BioCyc; NMAR436308:GI3J-1759-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR003838; ABC_permease_dom. DR InterPro; IPR025857; MacB_PCD. DR Pfam; PF02687; FtsX; 1. DR Pfam; PF12704; MacB_PCD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 44 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 268 289 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 310 338 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 358 378 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 22 230 MacB_PCD. {ECO:0000259|Pfam:PF12704}. FT DOMAIN 268 386 FtsX. {ECO:0000259|Pfam:PF02687}. SQ SEQUENCE 395 AA; 43749 MW; A7F422224B9894D2 CRC64; MEYRLRLAKR MLFNKKGSLI GAVLAVTIGI LVIHVNFVIF QGLFDAIVRD ISDYRNGDIL VTDEADYIDK SDLSVVNWFE RIPYVEAATP RLSSTAEMNM TKNGKLVEET RVPIVGIDPF RDIRASTVHE TVSEGSYVFS RNSIVLGSNV ARDLGGAEVG DSVKVLVVDR YGQDEIRRFT VSGIAKSPGG QGFDYTAVIH IDTLRDMMNR QGDTGSFMVK LNDPTKAFEV KEFFLRSFPN DDFKAETIEE SAEEQLAGFR SGIAMINMIG YFGMMSSAFA IVTIQMMLVN GKTREIGVMR SIGAKRKDIL IIFIFQGMII GAIGAGVGTA AGLGYTFYAK ETKMSFNNSL PLEVTYNWEK IIQTALTSFI LAIIASLYPS YRATKLLPVE AMRTV // ID A9A3C7_NITMS Unreviewed; 815 AA. AC A9A3C7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12556.1}; GN OrderedLocusNames=Nmar_0660 {ECO:0000313|EMBL:ABX12556.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12556.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12556.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12556.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12556.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3C7; -. DR STRING; 436308.Nmar_0660; -. DR EnsemblBacteria; ABX12556; ABX12556; Nmar_0660. DR KEGG; nmr:Nmar_0660; -. DR eggNOG; arCOG01114; Archaea. DR eggNOG; COG0574; LUCA. DR HOGENOM; HOG000284650; -. DR OMA; HDKVEFE; -. DR BioCyc; NMAR436308:GI3J-685-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0016301; F:kinase activity; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.50.30.10; -; 1. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR008279; PEP-util_enz_mobile_dom. DR InterPro; IPR002192; PPDK_PEP-bd. DR Pfam; PF00391; PEP-utilizers; 1. DR Pfam; PF01326; PPDK_N; 1. DR SUPFAM; SSF52009; SSF52009; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 51 137 PPDK_N. {ECO:0000259|Pfam:PF01326}. FT DOMAIN 717 786 PEP-utilizers. FT {ECO:0000259|Pfam:PF00391}. SQ SEQUENCE 815 AA; 94399 MW; C7FFB2AC9EEE85C0 CRC64; MMFHMDCSNL ENFFSSKSDV LKFLFHKLKK STIEEMMFFS IYEWDKNKEK ILCELSNNFP SELVIVRSSA MGEDSIQKSE AGNYLSIQNV NSSSKKQLEK SIQKVINSYH KKGNYNKNNQ ILIQKQSLDI ITSGVIFSKS LNIGSPYYII NFDDGTNTDS VTKGEVGNII KISRFSASVK IPLKWKKLIK SVQEIEKILG TDLLDIEFGI NIHKEIIIFQ VRPLTSTKSI TIKNFNNHFP KLIETNKKYF SKLQKNPSLI GNRTIFSDMS DWNPAEIIGS NPNLLDYSLY DYLIMKNTWS KSREMLGYTK VKTNSLMVKF GQKPYVDVRS SFNSLIPAKI PKKLKSKLMA YYMNKIQNFP HLHDKIEFEI LFSCYDPTIK NRLNELHKYN FSKEEIHQID QLLKKFTGDL IDNFPSILNA TLDAMRQLKE NREKSLKSLI DVKSPSKILN TLEKLLNDCR NIGTLYFSIM ARLAFVSSII LKGLEKNGNL DSKILENFMN TLQTPLSDIQ HDLNSYVNGD LSRKQFLVKY GHLRPGTYDI TASRYDKDKN FFNNVKYLKN EIDKISFNEF KFKKIFQKHI PFESEKFLFF IKESISQREK TKFEFTKNLS SVIELIAMLG KLYGFSREDV SNLSVDFILR NKNKNKNEIR KLWTKNILKE KNSKSLKNYL SLPPLLTHEN DFDVHEHYIS KPNFITSKKI TADIYTIKNS KKFLDVENKI VLIENADPGY DWLFTKNISG LITKYGGVAS HIAIRCAELG LPAAIGCGDI LFEQLENTQK VLLDCKHHQI IILEKNTEDN YSEEKKLLKS LGYIK // ID A9A550_NITMS Unreviewed; 256 AA. AC A9A550; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Precorrin-4 C11-methyltransferase {ECO:0000313|EMBL:ABX11959.1}; DE EC=2.1.1.133 {ECO:0000313|EMBL:ABX11959.1}; GN OrderedLocusNames=Nmar_0059 {ECO:0000313|EMBL:ABX11959.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11959.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11959.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11959.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11959.1; -; Genomic_DNA. DR ProteinModelPortal; A9A550; -. DR STRING; 436308.Nmar_0059; -. DR EnsemblBacteria; ABX11959; ABX11959; Nmar_0059. DR KEGG; nmr:Nmar_0059; -. DR eggNOG; arCOG00645; Archaea. DR eggNOG; COG2875; LUCA. DR HOGENOM; HOG000290520; -. DR KO; K05936; -. DR OMA; RLYHPEH; -. DR BioCyc; NMAR436308:GI3J-59-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046026; F:precorrin-4 C11-methyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.950.10; -; 1. DR Gene3D; 3.40.1010.10; -; 1. DR InterPro; IPR000878; 4pyrrol_Mease. DR InterPro; IPR014777; 4pyrrole_Mease_sub1. DR InterPro; IPR014776; 4pyrrole_Mease_sub2. DR InterPro; IPR006362; Cbl_synth_CobM/CibF. DR Pfam; PF00590; TP_methylase; 1. DR SUPFAM; SSF53790; SSF53790; 1. DR TIGRFAMs; TIGR01465; cobM_cbiF; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX11959.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11959.1}. FT DOMAIN 4 208 TP_methylase. {ECO:0000259|Pfam:PF00590}. SQ SEQUENCE 256 AA; 28295 MW; 71BA3671BC236193 CRC64; MSDVFFVGCG PGDPELITVK AKKLIQKADV VVYSGSLIPE PILKLCKKGK LYDAAGMVRE EIFDVLYKNA KKDKLVVRLH DGDPSIYGAI KEQIDNLTKK GIKSTVVPGV TAFLASAAAL GTQLTLPGVT QTIIVTRAES RTKVPKREKI SELAKHKSTL IFYLSVHLIS DLVKEAIAGG YKKKTPVAVV YRASWKDQKI IKGTLGDIAK KLKEEKITRT AIVIISDVID PETYEYSKLY DKKFSHGYRK AKKTKN // ID A9A4E6_NITMS Unreviewed; 75 AA. AC A9A4E6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=TPR repeat-containing protein {ECO:0000313|EMBL:ABX12635.1}; GN OrderedLocusNames=Nmar_0739 {ECO:0000313|EMBL:ABX12635.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12635.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12635.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12635.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12635.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4E6; -. DR STRING; 436308.Nmar_0739; -. DR EnsemblBacteria; ABX12635; ABX12635; Nmar_0739. DR KEGG; nmr:Nmar_0739; -. DR eggNOG; arCOG03032; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000110141; -. DR OMA; YDEANEC; -. DR BioCyc; NMAR436308:GI3J-765-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR001440; TPR_1. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF00515; TPR_1; 1. DR Pfam; PF13176; TPR_7; 1. DR SMART; SM00028; TPR; 2. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 2. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 71 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 75 AA; 8748 MW; DF8C7B6F94FBF7C5 CRC64; MEKIQELVFH GKALLEDGKF DDALGFFEQA LLLNQEDPDL WNYKGITLRS LGRYEEAMDC FNKSLKIDPR DRHSS // ID A9A4J1_NITMS Unreviewed; 9585 AA. AC A9A4J1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=Fibronectin type III domain protein {ECO:0000313|EMBL:ABX12969.1}; GN OrderedLocusNames=Nmar_1073 {ECO:0000313|EMBL:ABX12969.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12969.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12969.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12969.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12969.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4J1; -. DR STRING; 436308.Nmar_1073; -. DR PRIDE; A9A4J1; -. DR EnsemblBacteria; ABX12969; ABX12969; Nmar_1073. DR KEGG; nmr:Nmar_1073; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; arCOG05978; Archaea. DR eggNOG; arCOG07813; Archaea. DR eggNOG; ENOG410ZX5Q; LUCA. DR KO; K12567; -. DR OMA; DLTWTQP; -. DR BioCyc; NMAR436308:GI3J-1104-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.40.10; -; 78. DR InterPro; IPR003961; FN3_dom. DR InterPro; IPR013783; Ig-like_fold. DR Pfam; PF00041; fn3; 72. DR SMART; SM00060; FN3; 77. DR SUPFAM; SSF49265; SSF49265; 47. DR PROSITE; PS50853; FN3; 77. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 270 366 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 369 463 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 644 737 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 931 1025 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1219 1317 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1318 1406 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1407 1508 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1510 1603 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1604 1698 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1699 1798 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1799 1888 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1891 1993 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 1995 2089 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2090 2192 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2194 2288 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2289 2391 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2393 2487 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2488 2589 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2590 2688 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2689 2780 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2781 2882 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2884 2978 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 2979 3081 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3082 3176 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3177 3274 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3276 3366 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3368 3467 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3468 3563 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3564 3660 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3661 3763 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3765 3866 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3867 3974 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 3975 4074 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4075 4176 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4177 4278 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4279 4374 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4376 4472 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4473 4571 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4573 4670 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4673 4771 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4773 4865 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4866 4963 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 4965 5059 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5061 5161 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5162 5266 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5267 5372 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5373 5474 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5475 5572 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5573 5676 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5677 5775 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5776 5877 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5878 5970 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 5971 6069 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6070 6170 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6171 6267 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6268 6365 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6366 6482 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6483 6584 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6585 6676 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6678 6776 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6777 6878 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6879 6972 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 6974 7072 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7073 7176 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7177 7275 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7276 7375 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7434 7536 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7651 7741 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7743 7841 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7842 7940 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 7941 8037 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 8038 8134 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 8218 8312 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 8313 8418 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 8419 8520 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 8523 8616 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 8618 8714 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. SQ SEQUENCE 9585 AA; 1008130 MW; 4E3D0B0FDC8F9648 CRC64; MGTYTDPVVI AQPTDGFETG GAALEMATAV VRNVSASSFD VQLYRGDGTG NSIAGDVGYV VVEKGNHTLP DGTQLQAGTL NVSQYDARGG PGSVFQTITF SPAFSSAPNF IATANTDSAQ DWVSARYHSG SGQPTATTVR ASLEIGEGHG SAPISASSVG DGNDNVMGWL AIDRGTFDGI ESVRTTGVDE DPGAGDWKSV GFSNTYSNPV FLALTNHSGS DSTTVGRNNL SGTGVEFRLT EETSRDAELG HATGHVLWVV FESTPTASVP GQPLNISATA GDEQVTVSWT APNSDGGAAI DYYTVQYRVS GIPAWTDFGN TPDGTTTSLP VTGLINGVTY EFQVLAHNSV GNSNPSGAAN ATPEDSVTVP GQPTELTASA GNQQVLLSWT APSDGGSAIT DYIVEVDDGD GWETFADGTS TDTTATVTGL TNEQEHTFRV SAVNDEGTGN TSETATATPT GPITIEVRVN HNDDDAEEEV DDGDVDRGSS DLELTEDSGD EQEVGIRFND VAIPSGAIIQ NAYVQFTVDE EDDDDTDLQI FGEDTDDSER FSNSDDDISD RTKTSASVSW SPVPWDTVGE AGLDQRTPNL SSVIQEIVNR AGWQEDNSLS IIITGTGERT AESHNGDSSA APLLVVTYSF VATAPSAPTN LSATAGNEQV SLSWTAPSDG GSAITDYIIE VDDGDGWETF ADGTSTDTTA TVTGLTNGQE HTFRVSAVNG EGTGNVSSTV TATPNATTTI EVRVNHDDDD AEEAIVSGGD DDDDDGGDDG NMYLDSSDLE LTEDGSLEQE VGIRFNDVTI PSGAIIQNAY VQFTVDETDS ESTNLEIFGE DTDDSDRFTN SDYDISDRIK TSASVSWSPV EWDSTGEAGT DQRTPNLSSV IQEIVNRAGW SSDNSLSIII TGDGERTAES HDGDSSAAPL LVVTYSFEAS APSAPTNLIA TAGNTDVSLS WTAPFNGGSD ITDYVVEYSS GSGWNTFADG TSTDTTATVT GLTNDQEYSF RVSAVNAEGT GPVSNIATAT PIGALTITIQ ISQSSDDAEQ IRTVDEDDDD DDGGGGGVSY SMDLDDDDLD LDEDRFVGLR FNNVGIPNGA TITGAYVEFT SQDNDSGSSS VTIYGEDVDN ASTFTTDSTN ISSRTSTSAT VSWSISDWSE NEISSDTQTP SLVSIVQEIV NRGGWVSGNS LALIFEDVNS DNDRDALSYD ADSSEAPRLI ITYTAELGVP GAPTNLTAES GDEQVLLSWA PPASNGGSAI TDYIIEYNDG NGWQTFNDGT STDTTDVAVT GLTNGQSYDF RVSAVNTEGT GDASDIATAT PAGVPDAPVI DEALGGNGQV YLTWEHPPNN GAAITDYIIE VNDGNGWEVF NDGTSTNRFV TVDNLENGET YSFRVKAVNS AGEGPFSTPV TATPSSTATA PFLHTLTPGD SEVFVDWDAP NDDGGSTISS YEIQYSTDGT FDQNTPSVTV SGNPPLTEYT VPGLTNGQTY TFRVIAINEN GSSPPSNLDT ATPATIPDAP VIDPAQTVTG NEFVTIAWST PYNGGSPITH YVIQVKPAGG SWETVSSNFN DPQNILTIQN LENGVEHSFR VAAVNGVNQG PYSAIELATP GDVPAQILDL SVERGDEQVL LTWSAPNNHG FPITDYVIEV DYGDGNGFVV YNDGQSIDTT DVPVTGLENG VLHKFRVYAV NALGNATPSN EVEATPARAP DAPVITELNA GDGQIEVIWS TPDDGGESID EYRLEWSTND FSSILDDVTL SGNPPDTTYT VTGLTNGDTY YFRVIAINDV DESDPSDVES AIPVTVPAKP VLNTPVVGDS SLTVSWSAPN DGGSPLTGYT LSITDVTGGN TFPDVSLPAN AIDYNASELT NGNTYSFTLI AINAEGSSDP SDAVTGIPIG APGQIDDLGA ESGDKQVDLT WTQPDLNGSG DITSYTIEVR DSSGTLVDTI VITGTGGNPP ATSTTVTGLT NNETYSFTIT ATNENNLTST PSDPVTSTPL GAPAAPGNLT PTPGDKQVDL TWTQPDLNGS GDIISYTVTV RDPSGAVVQT IVIGDDEALT TSYLVTGLTN SVNYTFEVTA TNENNLTSSA ATTTSTPLGA PGQIDTPTAE SGDKQVDLTW TQPDLNGSGD ITSYTIEVRD SSGTLVDTIV ITGTGGNPPA TSYTVPGLDN GETYSFTITA TNENNLTSTP SDPVTSTPLG APAAPGNLAP TPGDKQVDLT WTQPDLNNSG DITLYTITVR DPSGAVVQTI VIGDDEALAT ETTVTGLTNS VNYTFEVTAT NENNLTSSAA TTTATPRGAP EQVTGLEATP GDRQVSLEWD PADENNSGAI TSYTVEVYDS SNTLVDTITV TGTGGNPPAT STTVPGLTSG ETYSFTITAT NGHGLTSIPS LPVTATPFGP PNPVTDLQAI SGDKQVDLIW TQPVPNAGGA IETYTITVRD PSGNVVQTIV IGDDEPLATS VNIDGLNNGV EYTFEIIATN SNNLDSSAVS TTEIPFGPPG VIDTPTADAG DGEVTIDWEE PELNDSGAIE TYTITVTDPS GNVVQTIIIG DDEALATSTT VTGLTNGVEY SFTITATNEN NLTSTPSTPV TATPITTPNA PTNLDATALS DTEIELTWTA PPTNPQFGTL TGYQIERQAE GEADFTIIVA DTQTTATTFN DLGLSSGVEY TYRVSAITTA GIGDASSPAS ATTFTVPAKP VLNEPVVGDS SLTVSWSKPS NGGTPITGYT LSITNLTTGI DLDDVSLSAD ATDYTASLLT NGNEYSFTLV AINSVGSSES SDPVTGIPLG APAAPGNLTP TSGDKQVDLT WTQPDLNGSG DITSYTVTVR DPNGAIVDTI TLTGSQGAPP ATSTTVTGLT NGVNYTFEVT ATNENNSTGP AATTTETPLG APAAPGNLTP TSGDKQVDLT WTQPDLNGSG DITLYTITVR DPSGAVVQTI VIGDDEALTT SYLVTGLTNS VNYTFEVTAT NENNLTSSAA TTTATPRGAP LQVTGLEATP GDKQVSLEWD PADENNSGAI TSYTVEVYDS SNTLVDTITV TGTGGNPPAT STTVTGLDNG ETYTFEVSAT NENNSTGPAA TATATPYGPP AAPGNLTPTP GDKQVDLTWT QPDLNGSGDI TLYTITVRDP SGAVVQTIVI GDDEALTTSY LVTGLTNSVN YTFEVTATNE NNLTSSAATT TATPRGAPLQ VTGLEATPGD RQASLSWNEA DDNNSGDISY YTITITGSDG VPVDPVQVTA PADNTVIPGL TSGVEYEFTI TATNEHGLTS TPSAPATATP FGPPNAVTGL GATPGDKQVD LEWTEPVPNA GGEIASYTIT VTDPNGNVVQ TITINAPADE ANIDGLNNGV EYTFTITATN VNGVTGDAAT ITAIPATVPL PPVLDSADRG NQSVTLSWTP QFDQGSTITQ YTIQYSSDNF QTTGTVVIGD DEALATSTTI SGLTNGLTYQ FQVIASNAFG PSDPSNIKSA KPATFPDAPT LDSADRGNQS VALSWTPGNN GGEPIDSYHV EWSEDENFAS ILDTATISGN PPAESYTVTG LTNGDTYYFR IISSNVIDDS APSNVLSQTP ATTPSEPLNP AAEPGPNQVE VSWTLPASDG GAEIEYYVVR YSTDGGSWTE EQTANGNTFS LVIDELTNGT PYLFEIFAHN DVGDGDISDR VTATPATAPS APQNLVATPQ TGQVLLVWEK PSSNGGATIT SYTVKWTPGE TFDPNNFESV TITSVDGVAP PVTTTTVTGL TNGQTYTFVV TATNSADEGP ASNPATTTPA NPPDAPVLVS VTSDDDQEST IVWNQPANGG SPIIDYLVEY TSTGAFNPQD TESVVITAPQ NNDPITTTID GLDNGVEYSF RVTARNLVDS GDPSNVLTGI PSTNPLPPRD LQVTDSGNAF VSLSWLTPLD DGGDDLVGYT VQYSDDNFAT ISTQEIIPVD GVLPTTATIS GLDNGSEYKF RVIAHNEDDG DNDDTDDSSD PSNTVSATPS TVPDAPTLLE VTDHGNGFVS LSWTASVFDG GSTLNTYVVE YTDDENGVFD EPPSSVIIGD DETLDTQATV SGLDNGVEYT FRVKATNDNG SSGYSNEVTE TPARAPDAPT LDSAVRGDES VTLSWTPGFD GGSDLTQYTV QYTPTGIFDP ENTVSEVFDT EPLPTTVTID SLTNGVTYTF RVFATNIEDN GPVSNTLDAK PATVPTKPLQ LNAEFGNLLV ILDWQLPADN GGEEIIDYII EYRLASQIPE ATWQVFDEGV GGVNTNLFVT VTGLTNGLTY EFRVSAENAV DVGPTSNVAT ARPATLSDAP TGLDAEAISD TEIDLEWNAP LLTGGASIDG YQIERQAEGE ADFTIIVADT GSADTTYSDT GLDRGTSYTY RVAAITDAGV GDTSSTAEAT TFDVPGKTEI ISLTPGNAQV EVEWSEPTNG GTPITGYRIE YTTNETDANN GVFTSSVDVA ASPLSATINN LNNGDTYYFR VTATNSVDFG EPSDVDSATP ARAPDAPTDL VATLGDGQVT IGFTPPVEDG GSDIIDYYIE YSVDNGDNWF EFNDQTESTT PEITVTGLNN GQEYLFRAVA VNGVGPGDES VPVAETPAAL SGNPTDLVAT RGNTQVSLTW AAPAVTGGVP VTSYIVEYTD DANGDFGANP SSQTVTSETL PVPTNTIING LQNGVTYTFR VIAVNTAGPS GPSNTDTAKP ATVPDAPTFD DPQPSAGTVG LSWTPGNTGG EPIERYRIDY TSANSFVEGQ YQSEFVTHPT TVVDIEDLEN GVEYQFRISA ENEVGFGDPS APITATPVDG PSQVTGLSGQ RGNGEVSLSW SEPFDGGVTI DTYVIEYSKD GFANTLTQTV TGLPPVTNAV IGNLENGVTY EFRVYAQNDI DDGPVSTTIS VTPATVPTPP TNLIPTFGST QVSLGWTASS DDGGSDIDDY IVEFKLKSES DWQVFNDGVS DVPGATVTGL TNGQIYEFRV KAHNDVGNSD PSEVKEATPA APPAAPEILT AVGSDETVTV TWNLAATNGA PVTEYELHYS IDGFENDIDN IIVVATQETG PISYPVEDLE NARTYSFKVR ANSIASFGPF SNTLDAVPFT TPNAPTDLEA TRGNGEVTLQ WNKPDFNGGS LITSYVVEYS SDSFATDPES QTVTPSDDPI TTVISGLDNG TLYSFRVKAV NAAGEGALSD IATATPATVP AAPTLDTATP GDESVLLGWT PSENTGGDAL IDYLIQFREL DATNDAESNW TTFDEGNGGV NVLTSITIDD LTNGVTYEFR VFAKNTVPGQ SLPSNVLSAE PSSAPSVPRD LRVTNIGDEF VSISWLAPAD NGGDDIVGYT VQYSDDNFTT ISTQEIVPVS GVLPTDATVS SLENGVDYQF RVIAHNEDDD PQIPDSSDPS DPVTGTPGTV PGIPTDLVAT TLSGTEIQLV WQAPSDDGGR AVSGYLIERL GTDGAFAEVT TTTIPVPESP TASDTTFTDT GLSLGTTYTY RVSAVNVLGT GDPSDTDDAT TFDYPSAPVL DAAIRGNELV TLQWTAPSDN GGTPLENYIA QFRLLGASDW TTFDDEISLS PTEINVDSGL TNGQTYEFRV IAENSVGESE ASNVLQAKPA TTPSKPLQVG AEFGDRQVSL TWLEPEISGG EDIFDYILEF RLASQTPEAS WQTFDEGLGG VNTNLSAIIT GLTNGQTYEF RVSAENDVGV GDVSDVATAT PATASNAPTA LSATAISGTE ITLSWIAPQN TGGFAITGYL IERHDGDGNF DDVTTLSVSL PPLPTDTTFT DTGLSQGTTY TYRVSAVTQL GPGIASGTDS DTTFDVPDKP EITSADRGNT QVDLSWTEPA NNGAAITAYL VQYSDDGTFD NTTPSVTLAT ADLTELSTTI DGLENGEEYS FRIIAINSVG QSDPSDIVTA TPATFPDAPT ITSATFGDGQ VTLTWTGPTE DGGSDVLDYT ITITSSLGTD TLVVPNTPFT RLIDGLDNGV SYTFTISARN DVGSGPDSAP ETVIPAAKPD VPTDLEAEAI SGTEIDLTWL APVNTGGLGI TGYLIERHDG DGNFATVTTT SVSVPPSTDD TTFNDTGLEL GTTYTYRISA ITGAGTGSSS QPASDTTFNV PDKPTITEVN VGNNELEIVW TAPTDNGGSP VTSYTVEYKL TTDNTWQLSP VPPADGALDV TVIGLENGEE YEFRVYAIST VGTSLPSDVA TGIPATTPSA PLNVVATRGD TEVSLTWDLP ADDGGSAIRD YLVEYASAEL NLIYTPFVEP EESTDRFTTV TGLTNGVEYT FRVQAVNEIA AGDYSAVTAD SAAVPAGDPS TPVISTVIAD DELVNLTWLA SDANGGNNLV YRIETSTDGF TTLIEDPAPT TSNLVYNVDD LQNGQEYSFR ITAITDAGSS DPTAPVTATP FALPDAPVLD GSRGNTEVTL TWTQGDTGGF AIQEFVIEYT ADEFTSDTPI VRTNDDDDDD DDDDDDDGNG NSSVTSITVS ADAVSHTIEG LANGVAYDFR IFAKTSIGYS ASSNVVTFTP ATIPGAPTPL SAQFGNALVT LTFSIPSDNG GESVDDFVIQ YRLQSASEDT PFTTFADGSD TSTTVTVTDL TNGEVYDFRV IAVNEVGQSD PATASAKPAT TPGAPDALQL DFANQLVSLE WAVPTDDGGD EIDDYIVEYS LDTSEWIVFP DNVTPANSTA VTVTDLINGF QYFFRISGVN IAGIGEPSEF RATTPATLPS APRDLEATRD NTSVHLTWNV PEDLGGAPLS AYMVEYLPPG QSTWIKFGDD LPATQTSVTV DGLTNGDQYQ FRITAKNTAI TDFGPASDTV SATPATTPTA PRDLVVIAGN NQATLSWNVP ESNGGDSITD YKIEIRIAGQ DWDVYDDGVS TTTQGIVIPN LTNGVTYEFR VTAINSVNPG PASDVVPGKP ATIPTPPKKL VVIPGDTKLD VTWTKPTNNG GSAITSYLVQ YSTDGTFDAS TPSVTVTDLT NLMVTISGLE NDVPIHVQVT AINGVGSSGP AGPVIGVPSL GSSSPVGLFA DAISDTEVFV SWSPPQELGD RTLEGFVLER LDANGNVLET FTINDPTKLD FTDTGLLPGT TYKYQVSALL SLEGADTVQS DPSSRTSVTT LDAPGAPLSP SATPGNAHVD LSWSAPNDGG SLITEYRIQY STDGTFDETT PEISVFGTST EPPQTSVDVT GLTNDQEYTF RVIAVTVIDT SLPSVTVTAT PYTVPDAPSN LTANRGPGEA KLSWGVPNDN GRSITQYVVE YTDATDGIFT VANTLTATVS ASETSTTITG LGIGNSFTFR VSAENLAGQG PPSDSAIATP ATAPDAPTGL SATRGDPDVL AIWFNPPSDG GSPISHYVLE YTTSPFFVPP EIADFTSKTN VITESTSVEL DDLENGLYYY FRVRAITTVG SSIPTDPVCL VNGGGSNSAA NAGGACIPMF DRPVFQDTII GTPFDAAAEL RWNTPAADNG SPITGYQVQR QVVSGTSVVL EQFNQNQIIY GFDDLTMDDI DGLEDIDFDE FDFVDFDELG LTEEEINKLQ GITSLVITGL ENDKKYVFEI APVNEAGPAR STNTVVVVPH AETDEEEDSI FVENPDIPDE ETIQKQLGLG LQEGNFIPPS SSLVDADKFS FFDRTFNQNQ VFNTNVTDAE LDKPKDLAEK FGLTKYQVPK ELKSGQIWAV PGAIIEVEGD ETFEEIVLPD PPGTPTNLSY IGSDRRVDIT WDESTGTVDR YLLEFSLNDG EEWLIVEEKD DNVPSFSKDG MVNGKVYLIR VSAANAGGIS NSTSPIPVSA FTIPGKPFDL TTQFGDSQVT LLWSAPVNNG GEEITNYVIE YSSDNGANWN VFDDGTSADP TATVTGLTNG QEYKFRVSAE NIAGVGLPSK TASDVPATQS SRPTGLSATP ALDSITITWN APEDIGGATE ISGYVIERSI SSGFFNPYVD DTGSALTSFV DTSLFSGTDY SYRIAAITLL PSGEPVVGDF SGEVSTTTLD LPDEPTSLQV FADRGQLTLT WIDPEDTSGL PVLGYEIERR STGAEFTTIV ENTDSDETIY TDSGLNDNTS YSYRVSTITA AGTSDPSQIV RGTTYGLPSA PLDLEADAKK KKVRLSWTAP VNDGGSPITD YKIEYKLATD TNWSVYADAE RIKPQATVDS LTNSKIYQFR VSAVNEFGAG LTSSIVQAKP SVAGATAAYN IQEIPSGQDV FLPHNAEDTL ENGGKLAGLK IKPKNTLSEI AMTSTFTKDA PTGVTQEAKM YLKFELDFVE DVETDASVPG QVTSVVATAS AGKVELTWSA PDSDGGADIS GYKIEQSTDN NTWTVLETTT CQCTDYTDNS LENGQTYYYR ISAINAKGTG TASDVASATP LDVPGPPRNL QTTPGNAQVT LAWDIPSTDG GITADNGGSI ITGYVVHYAI DTNFWKTFNE EPITERTVDV TGLTNGQNYK FRVFAVNEVG FLHPSLVSSE IPVTVPERPW GLTITAPSQN QINLSWKTPL DNGGSTITGY KIQKTIGKPT TNSVWSDAPS GTLGTVNSWS DTNLIPGTTY SYRVITLTDA VPDGDSNSAS GAIFATTLSV PGAPRNLTLE AEGKKIVIDW VAPTSNGGTP IVNYLIQWSD NGGSKWNTLK RDASAVTSAT VKSSNIVLGT EYQIRVYAEN TIGPGPASSV KSVTPTTIPT APRSLVTDPQ DGQVVLSWSK PLSDGGSAIT DYLVRYSEAG SGQFVTFADG VSTSTTATVT GLTNDVTYEF RVVAVNSVGN SPASTGKSVA VGEGNSSEEI HSFETIQLTI LMGPVEGSAH PTIPENSATA ATADPTDDII APDVQVYFID DNNNTVFDGI TVDRYPAGDT LTESAYIVTL EHFSTYGVNT VLSKFAVGSA GLATAGAAGG NAAAPPIITG ASLYSFGSPS IDNEGKIVYQ KTGNYVPFPE YSNSPVTTTL EAGKPSQIAA RVFNYGGPEA VQHTGLYLNM FGEQYETEHS DTYIEWSKDH DGKEDVLVVD PHGLMSGVNV STQIEDDLLW VLFDLTFEKE LETSNININA WNNHRSIGEV VAYNALEVID PAETTLDEEI KTSVVSDSSF YLVESTAQDC DEYCYLPFRV GISDNEITWT NTDPAVRTII SGDPVGGFDD NFKSVFIFEG SSYSAIIEDS GYYTTYDLLE EDYAGTVLVE VSGDPIVDAR VYERPTMPTH HTARQIVSAN SDGLLGADLS TNGFIKLFGT VEGVDTRQAV LIDITKPDGS IENIKTSSNN AGDFTMIYES GQLDDGNYVI SFGTSSKSVA TAFLRADAGK IIPTFTAQET VVESAETFAR TLDPELILTN TDLSEYDDTL HIDGTVNSGY SSVKVSVEFP DETVQEFNVK LSSKGTYSLP LKQSEWPFGK YTVSVSDERT NFATETFELI DKEDVITFDG EPAKKVEEKY LIADVTTQVI ELDSDYLETI NEFTDESELG SLTVTRPDIT KSSSMLEISG TVNLPGIQGE LIELKLTLPN GDVDELRTTV TSTNQFQTIL NDAWIPGEYH LEASFEGTEV VDLVFAIGLH SSESLISALD CPTDVCASIS SDTIDDSKSA PIMIEVKGIF ENIDSDETFD VVIIRPDNTP VELTTTLAGM DHLTQVFHAE EWMKGIYTVT VSYDDKQISA TSFRK // ID A9A5G7_NITMS Unreviewed; 92 AA. AC A9A5G7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12678.1}; GN OrderedLocusNames=Nmar_0782 {ECO:0000313|EMBL:ABX12678.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12678.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12678.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12678.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12678.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0782; -. DR EnsemblBacteria; ABX12678; ABX12678; Nmar_0782. DR KEGG; nmr:Nmar_0782; -. DR eggNOG; arCOG06569; Archaea. DR eggNOG; COG2343; LUCA. DR HOGENOM; HOG000164843; -. DR OMA; ENNHYFP; -. DR BioCyc; NMAR436308:GI3J-808-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007361; DUF427. DR Pfam; PF04248; NTP_transf_9; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 87 NTP_transf_9. {ECO:0000259|Pfam:PF04248}. SQ SEQUENCE 92 AA; 10567 MW; AA8E7FB71A07AB21 CRC64; MQAIWNDTVI AESDDTVVVE GNHYFPIDSI KKEYFEKTDM TSFCGWKGMA NYYSVTVNGK TNKDCAWYYA EPNDAAMKIK DMVAFWNGVE VK // ID A9A3M3_NITMS Unreviewed; 270 AA. AC A9A3M3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ABX13285.1}; GN OrderedLocusNames=Nmar_1389 {ECO:0000313|EMBL:ABX13285.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13285.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13285.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13285.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=[2Fe-2S] cluster; Xref=ChEBI:CHEBI:49601; CC Evidence={ECO:0000256|PIRSR:PIRSR006816-2}; CC Note=Binds 1 [2Fe-2S] cluster per subunit. CC {ECO:0000256|PIRSR:PIRSR006816-2}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13285.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M3; -. DR STRING; 436308.Nmar_1389; -. DR EnsemblBacteria; ABX13285; ABX13285; Nmar_1389. DR KEGG; nmr:Nmar_1389; -. DR eggNOG; arCOG02199; Archaea. DR eggNOG; COG0543; LUCA. DR HOGENOM; HOG000225118; -. DR KO; K02823; -. DR OMA; MKCGIGV; -. DR BioCyc; NMAR436308:GI3J-1424-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:InterPro. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0006221; P:pyrimidine nucleotide biosynthetic process; IEA:InterPro. DR Gene3D; 2.10.240.10; -; 1. DR InterPro; IPR012165; Cyt_c3_hydrogenase_gsu. DR InterPro; IPR019480; Dihydroorotate_DH_Fe-S-bd. DR InterPro; IPR017927; Fd_Rdtase_FAD-bd. DR InterPro; IPR001433; OxRdtase_FAD/NAD-bd. DR InterPro; IPR001221; Phe_hydroxylase. DR InterPro; IPR017938; Riboflavin_synthase-like_b-brl. DR Pfam; PF10418; DHODB_Fe-S_bind; 1. DR Pfam; PF00175; NAD_binding_1; 1. DR PIRSF; PIRSF006816; Cyc3_hyd_g; 1. DR PRINTS; PR00410; PHEHYDRXLASE. DR SUPFAM; SSF63380; SSF63380; 1. DR PROSITE; PS51384; FAD_FR; 1. PE 4: Predicted; KW 2Fe-2S {ECO:0000256|PIRSR:PIRSR006816-2}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|PIRSR:PIRSR006816-2}; KW Iron-sulfur {ECO:0000256|PIRSR:PIRSR006816-2}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR006816-2}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 100 FAD-binding FR-type. FT {ECO:0000259|PROSITE:PS51384}. FT METAL 223 223 Iron-sulfur (2Fe-2S). FT {ECO:0000256|PIRSR:PIRSR006816-2}. FT METAL 228 228 Iron-sulfur (2Fe-2S). FT {ECO:0000256|PIRSR:PIRSR006816-2}. FT METAL 231 231 Iron-sulfur (2Fe-2S). FT {ECO:0000256|PIRSR:PIRSR006816-2}. FT METAL 239 239 Iron-sulfur (2Fe-2S). FT {ECO:0000256|PIRSR:PIRSR006816-2}. SQ SEQUENCE 270 AA; 29599 MW; 7846C8E5BA6A91AD CRC64; MQRNHNHTTI VTVEKVIDET PTVRTLVFSD EVMSNVLPGQ FAMVWIPGIN ELPMSVMISD ESGKAAFTVR KHGAASTGLF NVKVGEQIGI RGPYGNSFDL KEGKLLLVGG GTGLVPMMRL LTHVKPTDDI TVLIGAKSKD EVFFEDLANR LLENNPHKVI VSTDDGSYGE KGFVTDLVEK HVDQIKFDGV YVCGPEIMMY KTVQSAHSRG IFVQASLERM MKCGVGICGS CCVGEDLVCK DGTVFDGQHL SQNKEFGKFH RNKAGILENY // ID A9A3F0_NITMS Unreviewed; 479 AA. AC A9A3F0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=TPR repeat-containing protein {ECO:0000313|EMBL:ABX12882.1}; GN OrderedLocusNames=Nmar_0986 {ECO:0000313|EMBL:ABX12882.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12882.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12882.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12882.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12882.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3F0; -. DR STRING; 436308.Nmar_0986; -. DR EnsemblBacteria; ABX12882; ABX12882; Nmar_0986. DR KEGG; nmr:Nmar_0986; -. DR eggNOG; arCOG03038; Archaea. DR eggNOG; arCOG04994; Archaea. DR eggNOG; ENOG4111FQH; LUCA. DR HOGENOM; HOG000108635; -. DR OMA; ANVWVTW; -. DR BioCyc; NMAR436308:GI3J-1014-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031012; C:extracellular matrix; IEA:InterPro. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 1.25.40.10; -; 1. DR Gene3D; 3.40.390.10; -; 1. DR InterPro; IPR024079; MetalloPept_cat_dom. DR InterPro; IPR001818; Pept_M10_metallopeptidase. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF00413; Peptidase_M10; 1. DR Pfam; PF13181; TPR_8; 2. DR SMART; SM00028; TPR; 3. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 3. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 34 135 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 479 AA; 55001 MW; E1432E5EB0B03E0A CRC64; MLSNFKKISC LLAIIILCTQ SFTGISFAQI NQEPEVMFNQ ATELFHNGEY KEAISIYDDI LEIAPNNIST LKMKGIAQSN QGDHKKSLEQ FFTVLQHRPN DVISLAGMGV GLGYLGEYQE ATSYFEKALK EKPNSIVIQN YMEFINNVIT KYPYTPTEKP DGLDGKTTAS IPDWVKPIAK WWSTNSIDDA EFVSALMFMI NNKIIEIPPV ETQEVSEEKI PEWIKNNAGW WADGEIDDDA FVQGIQYMIE KGLIIIKVEE ATQKTQEELD HEFYLFERYL RDISNNISKE KRYIEFPNPS QDVIKKFLRD YVKWNFEEEV KKASSKFPDP TYEIIDDTYI VYYKVYINEQ PSGLPLDHVS TLTDSFAFWE QQELSVNNQK LKIKFEVTNL KHEANVWVTW VVRNLGEGVL GHAHLGKGIV EVALGDFNCD GSFQLYDVDS VRTIMTHELG HSIGLKHVED RTSIMYPSFN PSYAYCLLS // ID A9A4Y6_NITMS Unreviewed; 201 AA. AC A9A4Y6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABX13440.1}; GN OrderedLocusNames=Nmar_1544 {ECO:0000313|EMBL:ABX13440.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13440.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13440.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13440.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13440.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1544; -. DR EnsemblBacteria; ABX13440; ABX13440; Nmar_1544. DR KEGG; nmr:Nmar_1544; -. DR eggNOG; arCOG01720; Archaea. DR eggNOG; COG0723; LUCA. DR HOGENOM; HOG000104884; -. DR OMA; RGECPCH; -. DR BioCyc; NMAR436308:GI3J-1587-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 2.102.10.10; -; 1. DR InterPro; IPR017941; Rieske_2Fe-2S. DR InterPro; IPR006311; TAT_signal. DR InterPro; IPR019546; TAT_signal_bac_arc. DR Pfam; PF00355; Rieske; 1. DR Pfam; PF10518; TAT_signal; 1. DR SUPFAM; SSF50022; SSF50022; 1. DR TIGRFAMs; TIGR01409; TAT_signal_seq; 1. DR PROSITE; PS51296; RIESKE; 1. DR PROSITE; PS51318; TAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 99 182 Rieske. {ECO:0000259|PROSITE:PS51296}. SQ SEQUENCE 201 AA; 21843 MW; 3F8925F289123452 CRC64; MSEVGTKKST GLSRRDFLKL MGAAGTGLAF APFVPFGNFM PNPNQASLEK VPVILPDGTQ ANVNTYPINH AEVITYPATG DAALDAEAFR KWQFIRLPEE LGGAKNDPSA FRAFSMICLH LWCLWKYWPD EGRKRGECPC HGSMYDPVSG TAYVGPASVQ ASPSNTLPKL TLEVDSDGLV FILPPKFNAQ ENGVIGYGRF A // ID A9A4E8_NITMS Unreviewed; 57 AA. AC A9A4E8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12637.1}; GN OrderedLocusNames=Nmar_0741 {ECO:0000313|EMBL:ABX12637.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12637.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12637.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12637.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12637.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12637; ABX12637; Nmar_0741. DR KEGG; nmr:Nmar_0741; -. DR eggNOG; arCOG08803; Archaea. DR eggNOG; ENOG41111NF; LUCA. DR HOGENOM; HOG000110163; -. DR OMA; PKCYLCH; -. DR BioCyc; NMAR436308:GI3J-767-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR InterPro; IPR007087; Znf_C2H2. DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 34 C2H2-type. {ECO:0000259|PROSITE:PS00028}. SQ SEQUENCE 57 AA; 6741 MW; 18447B357BB67F0A CRC64; MVLPLVDEHK PKCYLCHEGF ENLEDLRKHQ NSEHTEFFES HEKEMNKEPA PGDVTVF // ID A9A247_NITMS Unreviewed; 137 AA. AC A9A247; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Acyl-CoA hydrolase {ECO:0000313|EMBL:ABX12460.1}; GN OrderedLocusNames=Nmar_0564 {ECO:0000313|EMBL:ABX12460.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12460.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12460.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12460.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12460.1; -; Genomic_DNA. DR ProteinModelPortal; A9A247; -. DR STRING; 436308.Nmar_0564; -. DR EnsemblBacteria; ABX12460; ABX12460; Nmar_0564. DR KEGG; nmr:Nmar_0564; -. DR eggNOG; ENOG4111IUJ; LUCA. DR HOGENOM; HOG000221727; -. DR KO; K18014; -. DR OMA; EFLAPVY; -. DR BioCyc; NMAR436308:GI3J-587-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.129.10; -; 1. DR InterPro; IPR033120; HOTDOG_ACOT. DR InterPro; IPR029069; HotDog_dom. DR InterPro; IPR006683; Thioestr_dom. DR Pfam; PF03061; 4HBT; 1. DR SUPFAM; SSF54637; SSF54637; 1. DR PROSITE; PS51770; HOTDOG_ACOT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12460.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 128 HotDog ACOT-type. FT {ECO:0000259|PROSITE:PS51770}. SQ SEQUENCE 137 AA; 15216 MW; FD05CBD5125D3665 CRC64; METHLEVKLR VRISANDVHY AGNLLDGAHI MKLFGDVATE LTIRLDGDEG LLRAYENVEF LEPVYGGDFL EVVGKIIKVG NSSRKIIFEA FKIISSSNDP NQESACDLLE SPILVAKAVG TSVVTKNKQR RKIQEMQ // ID A9A4D6_NITMS Unreviewed; 207 AA. AC A9A4D6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 55. DE RecName: Full=Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; DE EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414}; GN OrderedLocusNames=Nmar_0729 {ECO:0000313|EMBL:ABX12625.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12625.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12625.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12625.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Destroys radicals which are normally produced within the CC cells and which are toxic to biological systems. CC {ECO:0000256|RuleBase:RU000414}. CC -!- CATALYTIC ACTIVITY: 2 superoxide + 2 H(+) = O(2) + H(2)O(2). CC {ECO:0000256|RuleBase:RU000414}. CC -!- SIMILARITY: Belongs to the iron/manganese superoxide dismutase CC family. {ECO:0000256|RuleBase:RU000414}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12625.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4D6; -. DR SMR; A9A4D6; 3-204. DR STRING; 436308.Nmar_0729; -. DR EnsemblBacteria; ABX12625; ABX12625; Nmar_0729. DR KEGG; nmr:Nmar_0729; -. DR eggNOG; arCOG04147; Archaea. DR eggNOG; COG0605; LUCA. DR HOGENOM; HOG000013583; -. DR KO; K04564; -. DR OMA; METIFAR; -. DR BioCyc; NMAR436308:GI3J-755-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004784; F:superoxide dismutase activity; IEA:UniProtKB-EC. DR InterPro; IPR001189; Mn/Fe_SOD. DR InterPro; IPR019833; Mn/Fe_SOD_BS. DR InterPro; IPR019832; Mn/Fe_SOD_C. DR InterPro; IPR019831; Mn/Fe_SOD_N. DR PANTHER; PTHR11404; PTHR11404; 1. DR Pfam; PF02777; Sod_Fe_C; 1. DR Pfam; PF00081; Sod_Fe_N; 1. DR PIRSF; PIRSF000349; SODismutase; 1. DR PRINTS; PR01703; MNSODISMTASE. DR SUPFAM; SSF46609; SSF46609; 1. DR SUPFAM; SSF54719; SSF54719; 1. DR PROSITE; PS00088; SOD_MN; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|RuleBase:RU000414}; KW Oxidoreductase {ECO:0000256|RuleBase:RU000414, KW ECO:0000313|EMBL:ABX12625.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 91 Sod_Fe_N. {ECO:0000259|Pfam:PF00081}. FT DOMAIN 99 201 Sod_Fe_C. {ECO:0000259|Pfam:PF02777}. SQ SEQUENCE 207 AA; 24142 MW; 1594319D74D1DBEC CRC64; MVQYELPRLP YGYDELEPYI DTETMKIHHQ KHHQSYVDGL NKSLIEIGSA SHPQYITSIL SDLKAIPESG RNKINFFGGG FENHRLFWEI MTPNGDGSPG GKIEDAIDVY FDSFDNFKEI FSNTAIGIQG SGWCWLVFNS TYSKIEILST ENQTSPWTLQ KIPLLGLDVW EHAYYLKYQN RRPDYVKEWW NIVNWDYVEN RFSELVG // ID A9A2T7_NITMS Unreviewed; 303 AA. AC A9A2T7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 62. DE SubName: Full=GHMP kinase {ECO:0000313|EMBL:ABX13614.1}; GN OrderedLocusNames=Nmar_1718 {ECO:0000313|EMBL:ABX13614.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13614.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13614.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13614.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the GHMP kinase family. CC {ECO:0000256|RuleBase:RU004209}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13614.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2T7; -. DR STRING; 436308.Nmar_1718; -. DR EnsemblBacteria; ABX13614; ABX13614; Nmar_1718. DR KEGG; nmr:Nmar_1718; -. DR eggNOG; arCOG04263; Archaea. DR eggNOG; COG1829; LUCA. DR HOGENOM; HOG000229977; -. DR KO; K06982; -. DR OMA; ICEIKEL; -. DR BioCyc; NMAR436308:GI3J-1763-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR Gene3D; 3.30.230.10; -; 1. DR InterPro; IPR006204; GHMP_kinase_N_dom. DR InterPro; IPR006203; GHMP_knse_ATP-bd_CS. DR InterPro; IPR012043; PoK. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR Pfam; PF00288; GHMP_kinases_N; 1. DR PIRSF; PIRSF016896; GHMP_arc_MJ0969; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR PROSITE; PS00627; GHMP_KINASES_ATP; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU003563}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000256|RuleBase:RU003563, ECO:0000313|EMBL:ABX13614.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU003563}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU003563, KW ECO:0000313|EMBL:ABX13614.1}. FT DOMAIN 98 157 GHMP_kinases_N. FT {ECO:0000259|Pfam:PF00288}. SQ SEQUENCE 303 AA; 33409 MW; A0C2AF4594B9FC85 CRC64; MKGVAFCPAH ITGFFKAHLE NNQEKLENLG SMGAGFSIRQ GVTTKVTIDK KNNHDSNFKI ITKGYQSDKT DVSEFVLNEF LKIGNFEDKF FNIEHEISIP VGYGLGSSSA VALSLSFALD QALNTKLDKN TIGQIAHNAE VNCKTGLGDV LASFHGGFEV RVKPGAPGIG TVEKISTDKI SVIMICFSPI STNKFIKERL SQINGLGGKM VNRLLESKDY QHFQDMSLEF AKYVDVMTPR MQKIVNELTQ NDIKCGIALF GETIFSMIPK EDESKVLKIL EKYSDGVIIN SELDNIGARV LNN // ID A9A5R7_NITMS Unreviewed; 85 AA. AC A9A5R7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 39. DE SubName: Full=Zinc finger UBP-type protein {ECO:0000313|EMBL:ABX13072.1}; GN OrderedLocusNames=Nmar_1176 {ECO:0000313|EMBL:ABX13072.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13072.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13072.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13072.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13072.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5R7; -. DR STRING; 436308.Nmar_1176; -. DR EnsemblBacteria; ABX13072; ABX13072; Nmar_1176. DR KEGG; nmr:Nmar_1176; -. DR eggNOG; arCOG06790; Archaea. DR eggNOG; ENOG41122S3; LUCA. DR HOGENOM; HOG000074646; -. DR OMA; VERIPAF; -. DR BioCyc; NMAR436308:GI3J-1208-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.30.40.10; -; 1. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR InterPro; IPR001607; Znf_UBP. DR Pfam; PF02148; zf-UBP; 1. DR SMART; SM00290; ZnF_UBP; 1. DR PROSITE; PS50271; ZF_UBP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 20 85 UBP-type. {ECO:0000259|PROSITE:PS50271}. SQ SEQUENCE 85 AA; 9662 MW; 613D9AA0DBCFA266 CRC64; MSKECNHFLE ETKGIAPNTK SCEECEKEHL PVVAIRMCLT CGHVGCCDSS IGKHATKHFE ETGHPVMKAI PGDIWKWCYI CKEYY // ID A9A488_NITMS Unreviewed; 375 AA. AC A9A488; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABX12577.1}; GN OrderedLocusNames=Nmar_0681 {ECO:0000313|EMBL:ABX12577.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12577.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12577.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12577.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12577.1; -; Genomic_DNA. DR ProteinModelPortal; A9A488; -. DR STRING; 436308.Nmar_0681; -. DR EnsemblBacteria; ABX12577; ABX12577; Nmar_0681. DR KEGG; nmr:Nmar_0681; -. DR eggNOG; arCOG03032; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000106014; -. DR OMA; REIRLWK; -. DR BioCyc; NMAR436308:GI3J-706-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 2. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR001440; TPR_1. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF00515; TPR_1; 1. DR Pfam; PF13414; TPR_11; 1. DR SMART; SM00028; TPR; 4. DR SUPFAM; SSF48452; SSF48452; 2. DR PROSITE; PS50005; TPR; 4. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 36 171 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. FT COILED 280 303 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 375 AA; 43710 MW; F562A8860D915838 CRC64; MLVKKPFGKK SEEKEEEPKV EKVSKETSLV DVDYNRKRLF KKGVNLMADE KLEEAITVFE QALRIDPDNV ETLLKLGYAR FHLDDHHEAL RVYDKILDID VTNPEAWNLK GLVHYEQKNY SKALDSVEKA IETDPTYGMA WYNKACFLSL LNQVPESLES LKRSIEIDVK NARKSIRDKD FVNVRVEEGF KRIQEVVVLE SVRQGYHTIG SIVWTTFLDK KDAEDALRKL LEKGLIVKNE KRDGLSRIPV YDLAPNVAEK MGKEKKGLFG ITRKKLPKPV KNLKELSQAI QIAKEAIEEE NAEKAIEIFE EFIDPKKSGE HMIENFFDEH REIRLWKIRL KDRGNDYFEE NKEKMLVVFD NIEVTITKKL RNEIS // ID A9A2W8_NITMS Unreviewed; 190 AA. AC A9A2W8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13645.1}; GN OrderedLocusNames=Nmar_1749 {ECO:0000313|EMBL:ABX13645.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13645.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13645.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13645.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13645.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1749; -. DR EnsemblBacteria; ABX13645; ABX13645; Nmar_1749. DR KEGG; nmr:Nmar_1749; -. DR eggNOG; arCOG08765; Archaea. DR eggNOG; ENOG41110SH; LUCA. DR HOGENOM; HOG000109025; -. DR OMA; WYCVSRI; -. DR BioCyc; NMAR436308:GI3J-1796-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 102 122 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 158 177 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 190 AA; 21760 MW; E904A03C49A5AA04 CRC64; MKSRHLEKTD KGYKVFLYIF YVCGFIMGSS LIFGVYVTMI EWMENGTYVM GEAIHNTTIP FENFARVSTW IFFSTIIGWY CVSRIGWRRT AGNKIVGTRM ALLQLMLLGF SIITLFEVMY NFSVLTAQIS AGIVDGILPD IDKLSIAYPD PDRPWNTIFA IKMFLAAFII STHAFYLSTK PRKLLDEPEV // ID A9A3E4_NITMS Unreviewed; 403 AA. AC A9A3E4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12876.1}; GN OrderedLocusNames=Nmar_0980 {ECO:0000313|EMBL:ABX12876.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12876.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12876.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12876.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12876.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3E4; -. DR STRING; 436308.Nmar_0980; -. DR EnsemblBacteria; ABX12876; ABX12876; Nmar_0980. DR KEGG; nmr:Nmar_0980; -. DR eggNOG; arCOG00357; Archaea. DR eggNOG; COG0012; LUCA. DR HOGENOM; HOG000087627; -. DR KO; K06942; -. DR OMA; GEYMRTG; -. DR BioCyc; NMAR436308:GI3J-1008-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR031167; G_OBG. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR013646; MMR_HSR1_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR004095; TGS. DR InterPro; IPR012676; TGS-like. DR Pfam; PF01926; MMR_HSR1; 1. DR Pfam; PF08438; MMR_HSR1_C; 1. DR Pfam; PF02824; TGS; 1. DR PRINTS; PR00326; GTP1OBG. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF81271; SSF81271; 1. DR PROSITE; PS51710; G_OBG; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 272 OBG-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51710}. SQ SEQUENCE 403 AA; 44683 MW; 36AF2CA972BB4BD8 CRC64; MPIKLGLIGK TNTGKTTFFN SATLSSEEIS SYPFTTKSPV SGIANAITLC VHPEFKIQDN PNNSKCVDGW RYIPIELIDL PGLIKDAWKG KGLGNQFLSI AAQSDALLHV VDASGGIDST GKITEVGTGD PISDFADIEE ELIMWYHKIL EGNREKVSKL INSGSEFVDT VTDLYRGIGV NKFHVKESLV ATGLEEKNFD DFDMVDSKKF ASHLRKISKP TLIVANKIDV DGADKNFARL RERYNDSIVI PASGDSEFSL RRAEQKGLIK YSPGSEQFDI LKSDELNEKQ INALDFIKKG IMGEYMRTGV QFAINVAVFK LLKMNSIYPV ADETKLADKK GRILPDLILL KDGATINDLA KEIHTDLTKG LLYGKDLRYN LRLPVDYQLR DRDVVSLVSA AKK // ID A9A3Q5_NITMS Unreviewed; 153 AA. AC A9A3Q5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13317.1}; GN OrderedLocusNames=Nmar_1421 {ECO:0000313|EMBL:ABX13317.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13317.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13317.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13317.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13317.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1421; -. DR EnsemblBacteria; ABX13317; ABX13317; Nmar_1421. DR KEGG; nmr:Nmar_1421; -. DR eggNOG; arCOG08772; Archaea. DR eggNOG; ENOG41110B4; LUCA. DR HOGENOM; HOG000109147; -. DR OMA; PFPNFAK; -. DR BioCyc; NMAR436308:GI3J-1456-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 153 AA; 17619 MW; 62925F3BE8392667 CRC64; MVGENFAGNI IVNLANLPDF LRNPILKKRM MEFFSLAKPD QDEVINNALE AGPTIPFPNF AKLFKTWLKI LTTLSEEQRE GLFSAYITEV AQNPQKLITF NLDGILEIYL TLEENEKEIL ASTVKRIINN LDEDKKRRIM LVIPENAKKH LKF // ID A9A647_NITMS Unreviewed; 57 AA. AC A9A647; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13525.1}; GN OrderedLocusNames=Nmar_1629 {ECO:0000313|EMBL:ABX13525.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13525.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13525.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13525.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13525.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1629; -. DR EnsemblBacteria; ABX13525; ABX13525; Nmar_1629. DR KEGG; nmr:Nmar_1629; -. DR eggNOG; arCOG08792; Archaea. DR eggNOG; ENOG4111109; LUCA. DR HOGENOM; HOG000109951; -. DR OMA; ITIMRMI; -. DR BioCyc; NMAR436308:GI3J-1674-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 2.10.110.10; -; 1. DR InterPro; IPR001781; Znf_LIM. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 57 AA; 6325 MW; 479C4BD3E19B0A2E CRC64; MIIFMSVEVT CGKCGEKITN MKMLKSLKDV MNPYSGKCPS CGQKLSTSEF SLDVQEK // ID A9A4D3_NITMS Unreviewed; 574 AA. AC A9A4D3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 56. DE SubName: Full=SNF2-related protein {ECO:0000313|EMBL:ABX12622.1}; GN OrderedLocusNames=Nmar_0726 {ECO:0000313|EMBL:ABX12622.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12622.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12622.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12622.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12622.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4D3; -. DR STRING; 436308.Nmar_0726; -. DR EnsemblBacteria; ABX12622; ABX12622; Nmar_0726. DR KEGG; nmr:Nmar_0726; -. DR eggNOG; arCOG00883; Archaea. DR eggNOG; COG0553; LUCA. DR HOGENOM; HOG000110086; -. DR OMA; DWSPAIH; -. DR BioCyc; NMAR436308:GI3J-752-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000330; SNF2_N. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF00176; SNF2_N; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU004294}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU004294}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 123 291 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 409 562 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. SQ SEQUENCE 574 AA; 66001 MW; 19718203AFF01EE1 CRC64; METSMENIGT LEYVLDKYSK IWCWKITGER AVSMISRLVP EAWYGENVNE VIIPDSTESV KQIKLILDRY PLDILSKTTW QRKIVKTYAP KPTLPPVKHK LKRAKTGDQF RGKLLNFQKE GLDFLMKSSG NALLADEMGL GKTVQTLSYV ATEKQTFPVL VVAPLVTLNN WEREIEKFLK KKSRNGRLLE SESPTVTLIR TGKKKKLPKT DIYVINYELL FKRYDDLAKV GIKTVVCDEV HNLRSKTTQK YKSIKKLAAL PSVSYRIGLS GTPIYNRGSE IWPIIDILKP GLLGSFKEFC EYFCYVNEKG KAIVLENKRA SLRNELQKHV MLRRKKSDVL KELKDKVRYK EVIAADTDYY VEELDKIWKR LEEEQKEAES EFSKSASYHR AIQSERQIAG LAKLPHVINF VKNIMEIEES VVVFCHHKVI HKLLHESLQE FSPVSIIGGQ SDTLRQDQID KFQKGESKLM IAGIRAGNVG INLTRAKYVI FAELDWSPAI HRQAEDRLHR IGQQNTVFAY YLIGNGTLDD HVANVLVDKS YEIDEIMDES VETFENKDKA QLILAQIQDK IRSK // ID A9A407_NITMS Unreviewed; 595 AA. AC A9A407; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 62. DE SubName: Full=ABC transporter related {ECO:0000313|EMBL:ABX12191.1}; GN OrderedLocusNames=Nmar_0295 {ECO:0000313|EMBL:ABX12191.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12191.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12191.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12191.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 2 ABC transporter domains. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12191.1; -; Genomic_DNA. DR ProteinModelPortal; A9A407; -. DR STRING; 436308.Nmar_0295; -. DR EnsemblBacteria; ABX12191; ABX12191; Nmar_0295. DR KEGG; nmr:Nmar_0295; -. DR eggNOG; arCOG00187; Archaea. DR eggNOG; COG1245; LUCA. DR HOGENOM; HOG000222803; -. DR KO; K06174; -. DR OMA; AYKPQYI; -. DR BioCyc; NMAR436308:GI3J-307-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013283; ABCE. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR007209; RNaseL-inhib_metal-bd_dom. DR PANTHER; PTHR19248; PTHR19248; 1. DR Pfam; PF00005; ABC_tran; 2. DR Pfam; PF00037; Fer4; 1. DR Pfam; PF04068; RLI; 1. DR PRINTS; PR01868; ABCEFAMILY. DR SMART; SM00382; AAA; 2. DR SUPFAM; SSF52540; SSF52540; 2. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 2. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 2. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 29 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 43 72 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 67 312 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. FT DOMAIN 339 558 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 595 AA; 66133 MW; D77966B9F68EE162 CRC64; MTHRVGVLDH ELCQPKKCGL ECIKYCPVNK SGADCIVLNE ESKKAQIDED ICNGCGICVK VCPFDAITIV NLASELATDK IHQYGPNSFR LYKLPTPKKG EVVGLLGRNG MGKSTVVNIL SGNLKPNLGR YENPPEWDEI LKYYSGTELK QHFEKIKQNQ IRASIKPQQV HQIAQAFDGT GKELIEKYDE RGVSRELIKE LGLQNSVDQS LKELSGGELQ RIAVAAAASK DTEFYFFDEP SSYNDVFQRT GVARVIQSLA KLGKSVMVVE HDLTLLDFLS DYIEVLYGEP SAYGIVSNIL STKVGINVFL DGYLPNENVR FRDKAFSFDV SSTSTDEFQE GSEIVKYPKL TKKYPSFSVE VEPGQVRKGE VLGIMGANAL GKTTMMKMIA GVEKPDSGEV DKKIKIAYKP QYLQNDVDVE VVALLDKANG SPVEGSMEEE QILDPLKIKK LYTKSVKNLS GGELQKVAVA SCLLQKVDLY ALDEPSAFLD VEDRIAVAKF LQKFVRSFGK SAIVIDHDLQ LMDLISDTMV IFEGESGAAG KATSPLPKSD AMNRFLKSLD MSFRRDEKSL RPRVNKLESR LDKDQKSSGN FYYKN // ID A9A4X3_NITMS Unreviewed; 206 AA. AC A9A4X3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE SubName: Full=Mn2+-dependent serine/threonine protein kinase {ECO:0000313|EMBL:ABX13427.1}; GN OrderedLocusNames=Nmar_1531 {ECO:0000313|EMBL:ABX13427.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13427.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13427.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13427.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13427.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X3; -. DR STRING; 436308.Nmar_1531; -. DR EnsemblBacteria; ABX13427; ABX13427; Nmar_1531. DR KEGG; nmr:Nmar_1531; -. DR eggNOG; arCOG01185; Archaea. DR eggNOG; COG3642; LUCA. DR HOGENOM; HOG000226425; -. DR KO; K08851; -. DR OMA; PAVYFFD; -. DR BioCyc; NMAR436308:GI3J-1573-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW. DR InterPro; IPR022495; Bud32. DR InterPro; IPR011009; Kinase-like_dom. DR InterPro; IPR000719; Prot_kinase_dom. DR InterPro; IPR008266; Tyr_kinase_AS. DR PANTHER; PTHR12209; PTHR12209; 1. DR Pfam; PF00069; Pkinase; 1. DR SUPFAM; SSF56112; SSF56112; 1. DR TIGRFAMs; TIGR03724; arch_bud32; 1. DR PROSITE; PS50011; PROTEIN_KINASE_DOM; 1. DR PROSITE; PS00109; PROTEIN_KINASE_TYR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13427.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Serine/threonine-protein kinase {ECO:0000313|EMBL:ABX13427.1}; KW Transferase {ECO:0000313|EMBL:ABX13427.1}. FT DOMAIN 1 206 Protein kinase. FT {ECO:0000259|PROSITE:PS50011}. SQ SEQUENCE 206 AA; 23467 MW; 3E58A9AB4015A62F CRC64; MKLIKKGAEA DIYQTMWQNS NAILKIRKTK NYRNSSLDSK IRKQRTIKES QIISQVKSFG IPAPLIYFVN LKNTSIIMQE IPGKPVHDLS ESKIIQLSKT IGKLVGMLHK NGIMHGDLTT SNFIFFKNNV YVIDFGLSQN TIKPEDHAVD LRLIKEILNS AHAKIMIPAW KNFLLGYKYV VGNTNYVKIT KLVSDIESRG RYAQVV // ID A9A1I2_NITMS Unreviewed; 183 AA. AC A9A1I2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=NUDIX hydrolase {ECO:0000313|EMBL:ABX13161.1}; GN OrderedLocusNames=Nmar_1265 {ECO:0000313|EMBL:ABX13161.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13161.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13161.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13161.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13161.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I2; -. DR STRING; 436308.Nmar_1265; -. DR EnsemblBacteria; ABX13161; ABX13161; Nmar_1265. DR KEGG; nmr:Nmar_1265; -. DR eggNOG; arCOG01072; Archaea. DR eggNOG; COG0494; LUCA. DR HOGENOM; HOG000250455; -. DR OMA; FSANSHH; -. DR BioCyc; NMAR436308:GI3J-1298-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.79.10; -; 1. DR InterPro; IPR000086; NUDIX_hydrolase_dom. DR InterPro; IPR015797; NUDIX_hydrolase_dom-like. DR Pfam; PF00293; NUDIX; 1. DR SUPFAM; SSF55811; SSF55811; 1. DR PROSITE; PS51462; NUDIX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13161.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 23 156 Nudix hydrolase. FT {ECO:0000259|PROSITE:PS51462}. SQ SEQUENCE 183 AA; 20500 MW; 2092641AE356B5A5 CRC64; MLNLEQIQSI FSTPIDPVLE NTGKYRLASV LVVVYGEEPM VVMTEKPKDM KFHAGEISFP GGKLDPADSD LLDTALRETS EEIGLTITRD QVIGQLDPVI TLNSGFLILP FISVLREISK LSANCEVEKI FHIPLESFLK TMAKDPDPSH NKIQEMYTFE YQNQIVWGAS ARILKQMQSG LKS // ID A9A2J7_NITMS Unreviewed; 306 AA. AC A9A2J7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=Transcription factor TFIIB cyclin-related {ECO:0000313|EMBL:ABX13236.1}; GN OrderedLocusNames=Nmar_1340 {ECO:0000313|EMBL:ABX13236.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13236.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13236.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13236.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13236.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2J7; -. DR STRING; 436308.Nmar_1340; -. DR EnsemblBacteria; ABX13236; ABX13236; Nmar_1340. DR KEGG; nmr:Nmar_1340; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; WRAFDHD; -. DR BioCyc; NMAR436308:GI3J-1374-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.472.10; -; 2. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR023486; TFIIB_CS. DR InterPro; IPR013150; TFIIB_cyclin. DR InterPro; IPR013137; Znf_TFIIB. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF08271; TF_Zn_Ribbon; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SMART; SM00385; CYCLIN; 2. DR SUPFAM; SSF47954; SSF47954; 2. DR PROSITE; PS00782; TFIIB; 2. DR PROSITE; PS51134; ZF_TFIIB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 14 45 TFIIB-type. FT {ECO:0000259|PROSITE:PS51134}. SQ SEQUENCE 306 AA; 34006 MW; 7C72B385EEF29644 CRC64; MSSGRFFDHI MSSQEIKCPR CGKNALVTDV ESSEIFCSNC GIVVEEKTND RRPERAFANS TTDKSHTGDK TSLTRHDRGL STVINPFDKD SAGSPLSASM KSSMTRLRKW DNRSRIKTND DRNLQQALLE LSKMKEKLSL SDAIAEKASY IYRKALEKKL VKGRSIASLV AACLYAACRE SEAPRTLREV AASIGIKRKE ISATYRLIFK ELDLKMPVID SVSCIAKIAS NAELSEKTKR YAIKILKKAE KQNMSAGKHP MGLAASALYL ASIDLEEFRT QKEIADAAGI TEVTVRNRCK GLKQMI // ID A9A5M2_NITMS Unreviewed; 182 AA. AC A9A5M2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Resolvase, Holliday junction-type {ECO:0000313|EMBL:ABX12733.1}; GN OrderedLocusNames=Nmar_0837 {ECO:0000313|EMBL:ABX12733.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12733.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12733.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12733.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12733.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5M2; -. DR STRING; 436308.Nmar_0837; -. DR EnsemblBacteria; ABX12733; ABX12733; Nmar_0837. DR KEGG; nmr:Nmar_0837; -. DR eggNOG; arCOG00919; Archaea. DR eggNOG; COG1591; LUCA. DR HOGENOM; HOG000106742; -. DR OMA; DQIERCL; -. DR BioCyc; NMAR436308:GI3J-864-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.1350.10; -; 1. DR InterPro; IPR002732; Hjc. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR InterPro; IPR011856; tRNA_endonuc-like_dom. DR Pfam; PF01870; Hjc; 1. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 182 AA; 21293 MW; AA3E0A9E3DD8DB89 CRC64; MRSRTVTISK LSKKTKTNNQ KAAKTRRQRG YQWEDTLVKR FNATPNWKAF RLGSPSIALP DVLAVNTEDS AIFTIEAKSG TSTSLPVPYD QIERCLEWAK TFDIYKKRKV LLAFKFLSKK RLGIGKYESR ELREFYKIWD EKLDITDCVC TYDGKIYAKV DGMRKEINLK ECKMPFKTKQ RK // ID A9A1X7_NITMS Unreviewed; 100 AA. AC A9A1X7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 50. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX12098.1}; GN OrderedLocusNames=Nmar_0202 {ECO:0000313|EMBL:ABX12098.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12098.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12098.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12098.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12098.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1X7; -. DR STRING; 436308.Nmar_0202; -. DR EnsemblBacteria; ABX12098; ABX12098; Nmar_0202. DR KEGG; nmr:Nmar_0202; -. DR eggNOG; arCOG00731; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000246060; -. DR OMA; DYKTVQH; -. DR BioCyc; NMAR436308:GI3J-206-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 23 67 HTH arsR-type DNA-binding. FT {ECO:0000259|Pfam:PF01022}. SQ SEQUENCE 100 AA; 11528 MW; A93221C39BC7BDA8 CRC64; MANDPDAKRL LWFIFAGSRG GLTRLKIISK LKENPLNTNQ LANELGLDYK AIQHHIKVLE KNNLITKTGE KYGIMFFIST FLEVNMETFD KIEEKLDKSK // ID A9A289_NITMS Unreviewed; 99 AA. AC A9A289; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12800.1}; GN OrderedLocusNames=Nmar_0904 {ECO:0000313|EMBL:ABX12800.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12800.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12800.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12800.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12800.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12800; ABX12800; Nmar_0904. DR KEGG; nmr:Nmar_0904; -. DR eggNOG; ENOG4102U9S; Archaea. DR eggNOG; ENOG4110ZK2; LUCA. DR BioCyc; NMAR436308:GI3J-932-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 99 AA; 12033 MW; BE9AE7695D67B464 CRC64; MITFENRVRY EYKIKTARVD TLVKSILTHR DPKSQEAKDA SKFLDVLITE IDRFYEEHSD ILSKKGKRPH PRSRLPENKE WNENVEKYYE KNPRKRPKK // ID A9A2N9_NITMS Unreviewed; 188 AA. AC A9A2N9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13278.1}; GN OrderedLocusNames=Nmar_1382 {ECO:0000313|EMBL:ABX13278.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13278.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13278.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13278.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13278.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2N9; -. DR STRING; 436308.Nmar_1382; -. DR EnsemblBacteria; ABX13278; ABX13278; Nmar_1382. DR KEGG; nmr:Nmar_1382; -. DR eggNOG; arCOG04130; Archaea. DR eggNOG; COG1491; LUCA. DR HOGENOM; HOG000227950; -. DR KO; K07572; -. DR OMA; LWQILEE; -. DR BioCyc; NMAR436308:GI3J-1417-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.40.50.140; -; 1. DR InterPro; IPR007003; DUF655. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF04919; DUF655; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 188 AA; 21686 MW; 13DEA6091D3C2CFF CRC64; MYRAQSPPRK YEEYAYVLDF NPRGKSSTVR GREGIIITAI GENRLTLLEI LGIANSTFEV GEKIYIGKEG RTKVESVLGK MEYEKISSSA QTELQNVVET IVTENESKFV EYLNKAQPLT PRIHALELIP GIGKTYMKTM LEEREKKLFE SYEDLQERVG FKEPIKHITE RIMDEITGES RMNLFVKR // ID A9A5M0_NITMS Unreviewed; 104 AA. AC A9A5M0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12731.1}; GN OrderedLocusNames=Nmar_0835 {ECO:0000313|EMBL:ABX12731.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12731.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12731.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12731.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12731.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0835; -. DR EnsemblBacteria; ABX12731; ABX12731; Nmar_0835. DR KEGG; nmr:Nmar_0835; -. DR eggNOG; arCOG08697; Archaea. DR eggNOG; ENOG41111BW; LUCA. DR HOGENOM; HOG000106753; -. DR OMA; YATAYED; -. DR BioCyc; NMAR436308:GI3J-862-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 77 104 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 104 AA; 11597 MW; C9498625F7B5BE78 CRC64; MSSKEFDVNG TDYKIVITDQ VVGHVNNLKN LYNSTYEDPE SFEDVSAEIS NTINEIAATV EPEVEDSDLD GLIQEVIKAV DSKAEEIEKE LEGKESKKKS KSKK // ID A9A1P3_NITMS Unreviewed; 392 AA. AC A9A1P3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Putative metal cation transporter {ECO:0000313|EMBL:ABX13558.1}; GN OrderedLocusNames=Nmar_1662 {ECO:0000313|EMBL:ABX13558.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13558.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13558.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13558.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13558.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1662; -. DR EnsemblBacteria; ABX13558; ABX13558; Nmar_1662. DR KEGG; nmr:Nmar_1662; -. DR eggNOG; ENOG4102TXX; Archaea. DR eggNOG; ENOG411110F; LUCA. DR HOGENOM; HOG000096214; -. DR OMA; PRYLHAF; -. DR BioCyc; NMAR436308:GI3J-1707-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 164 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 176 192 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 212 231 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 243 260 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 266 289 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 309 334 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 340 361 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 373 391 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 392 AA; 42120 MW; 1CF6ED413084EAB1 CRC64; MELDEKRSQA KVIASGIIPF AFIVLMVAYI FGPGSDLLDL GIPLPEVTIE KVDFLESEIH ATVRNTGPIP VEVVMADVND RIHPAAVEPD RFLERYETAL VRIPFEWNDA EPYIIGITVD DGTRFEKEIA AAAPALQPTL DLAVFFAIIG TYVGIIPVMI GLLWLPFIKK IKKSKYHFFL ALTAGLLLFL GIDSIEEAIE VSDENLASSF NGVLLVATTS VLSFLGLYYA GEKLIKISDS SRITKPVAIA LMIAIGIGLH NFGEGLAIGA AVGLGSIAFS TFLIVGFALH NTTEGIAIAS PMSREKTVIW KLTAMGMIAG APAIFGAWVG GFVYSPFSSV IFLSIGAGAI FQVIITILKW IRTEGDRNLS SAAVASGFAL GMLIMYMTSI LV // ID A9A382_NITMS Unreviewed; 194 AA. AC A9A382; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12511.1}; GN OrderedLocusNames=Nmar_0615 {ECO:0000313|EMBL:ABX12511.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12511.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12511.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12511.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12511.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0615; -. DR EnsemblBacteria; ABX12511; ABX12511; Nmar_0615. DR KEGG; nmr:Nmar_0615; -. DR eggNOG; arCOG09615; Archaea. DR eggNOG; ENOG41126J8; LUCA. DR OMA; KDWFRLM; -. DR BioCyc; NMAR436308:GI3J-639-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 194 AA; 22896 MW; 8DF16DCE30852101 CRC64; MSEKFSEKIR NYGMRNFMLE TELAKLEQRG IEIGHINTVK KDENVDPELF DSDIRKSAKR MADFYVVYFS LENSVRRLIK ETLTEKYGKD WWEKGIPKGI KDNVKQIQED EKDSVMAIRS ADDPLTYTNF GELIPIIESQ WDLFSDRLRG KKAMQQILSQ FNKTRNLIAH SCELEPDEVT RLELLVKDWQ RIQT // ID A9A446_NITMS Unreviewed; 343 AA. AC A9A446; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12230.1}; GN OrderedLocusNames=Nmar_0334 {ECO:0000313|EMBL:ABX12230.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12230.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12230.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12230.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12230.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0334; -. DR EnsemblBacteria; ABX12230; ABX12230; Nmar_0334. DR KEGG; nmr:Nmar_0334; -. DR eggNOG; arCOG08038; Archaea. DR eggNOG; ENOG410Y4H9; LUCA. DR OMA; DWERENP; -. DR BioCyc; NMAR436308:GI3J-349-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 309 333 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 343 AA; 36070 MW; C0EEC491705DB18B CRC64; MKKMKMKVAS ILAITLLSIS ILSYGVNNSA FAANSFIEAS SSSGSVGNGD PLVISGSIVD YEDAGHALTF QIISPDNSIV QIGQVMGNIG SDGTFEMNLT AGGPLWKTAG EYTVKFFYGP TKGDATVNYA GGDTPSTPEP TAPEPEPEPT APEPEPEPTA PEPEPEPTAP EPEPITCGAG TEMVNGICQV IAEPEPEPEP QCPAGYSFRD GVCVEDGGGC LIATAAYGTE LAPQIQLLRE VRDNTVLSTA SGATFMTGFN TLYYSFAPTV ADWERENPMF KESVRAFITP MISTLSIMTL ADDGSEVEVL GLGISVIALN LAMYIAAPAL IGFKVHKSLK SRK // ID A9A645_NITMS Unreviewed; 884 AA. AC A9A645; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 60. DE SubName: Full=Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:ABX13523.1}; GN OrderedLocusNames=Nmar_1627 {ECO:0000313|EMBL:ABX13523.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13523.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13523.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13523.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13523.1; -; Genomic_DNA. DR ProteinModelPortal; A9A645; -. DR STRING; 436308.Nmar_1627; -. DR EnsemblBacteria; ABX13523; ABX13523; Nmar_1627. DR KEGG; nmr:Nmar_1627; -. DR eggNOG; arCOG03713; Archaea. DR eggNOG; arCOG04276; Archaea. DR eggNOG; COG0209; LUCA. DR HOGENOM; HOG000229277; -. DR KO; K00525; -. DR OMA; YNSKEGY; -. DR BioCyc; NMAR436308:GI3J-1672-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0031419; F:cobalamin binding; IEA:InterPro. DR GO; GO:0004748; F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:InterPro. DR InterPro; IPR005144; ATP-cone_dom. DR InterPro; IPR013346; NrdE_NrdA. DR InterPro; IPR000788; RNR_lg_C. DR InterPro; IPR013509; RNR_lsu_N. DR InterPro; IPR013344; RNR_NrdJ/NrdZ. DR InterPro; IPR008926; RNR_R1-su_N. DR Pfam; PF03477; ATP-cone; 1. DR Pfam; PF02867; Ribonuc_red_lgC; 1. DR Pfam; PF00317; Ribonuc_red_lgN; 1. DR PRINTS; PR01183; RIBORDTASEM1. DR SUPFAM; SSF48168; SSF48168; 1. DR TIGRFAMs; TIGR02506; NrdE_NrdA; 1. DR TIGRFAMs; TIGR02504; NrdJ_Z; 1. DR PROSITE; PS51161; ATP_CONE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 105 ATP-cone. {ECO:0000259|PROSITE:PS51161}. SQ SEQUENCE 884 AA; 99312 MW; 7F47CD5974A5963D CRC64; MDNSQIENTI NEIRKRSGAV TAFNKDKISN AIYKALAATS KADRGLADQL ADNVVNKLVE QGFTSTRSPT VEDIQDIVES TLIDSGNSDI AKAYIVYRHE RRKLRDEKMK VLNLKALDPV SKKFDLNCLR VLASRYLFRN GKNEIIESPT QMFERVAILV GIGDLMYDAQ VFDKSGNTKQ DVEEAKSYLE KLDAFDYKFK VGDYFFNKWH FRSLINHYVT LANKGHMKIS FKELLTLLAA KKLDGYADKI TEYFDLMVSQ DFLPNSPTMM NAGGRLGQLS ACFVLGMQDG MEEIMKSTSD AALIFKSGGG VGINYSDLRE EGDIVASTSG VASGPVSFMN IINTVTEVVK QGGKRRGANM GIIEAWHPDV EKFITNKTEP GVLENFNVSV GVWEDFWHAL VNTSDGNYVL RSPRDKKPVK EINAHQLIDL IALSAWKSAE PGLIFFDQIN KYNVFAKARQ APLRATNPCG EQSLYPYESC NLGSINLVNL VKRQADGTYE FDWQRYEETI RKTTRFLDNI IDVNHYPVPE INVASKESRR IGLGVMGVAD LLYKLRIPYN SKEGYELQSK LSEALTYYSM EESVALAKSR GEFPLCSKTE YPEGKIPVAG YYEKPKESHS YEWDALVEKI KQYGIRNVLT TTVAPTGTLS MIADCSNGME PAFALVFEKR VTVGRFFYTN KIVEQVLKEN NLYNDEILAK IADNYGSLKG IDEIPQWMQD VFVTAMDIHW SDHLMAQGVW QDWIGNAIAK TINMPYDVTA EDVKSAYLLA HEIGLKGITV YRDGSRHKQV LHMTSENAEK TFDVTPSEHV TNYVSTQITN PYIKSQVNAA LALKVHDEEI KSEPIQQQEE VAEDRLCPTC KNNLVFVEGC SICIECGFSG CTSG // ID A9A285_NITMS Unreviewed; 116 AA. AC A9A285; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12796.1}; GN OrderedLocusNames=Nmar_0900 {ECO:0000313|EMBL:ABX12796.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12796.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12796.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12796.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12796.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12796; ABX12796; Nmar_0900. DR KEGG; nmr:Nmar_0900; -. DR eggNOG; arCOG07348; Archaea. DR eggNOG; ENOG410Z81R; LUCA. DR BioCyc; NMAR436308:GI3J-928-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 116 AA; 13585 MW; B25366B609E91363 CRC64; MTEFTHNPYE KIYVRDMIKL DLDDLIGMMS SLESANAYWV EGVLFASFAM TESEELAKKE MQNEMYLDKI IFAKYENYSK TVKSSTNLEI GVLNMSKSKL YQDLISWLKS QPIWNE // ID A9A2X8_NITMS Unreviewed; 108 AA. AC A9A2X8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Thioredoxin {ECO:0000313|EMBL:ABX12106.1}; GN OrderedLocusNames=Nmar_0210 {ECO:0000313|EMBL:ABX12106.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12106.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12106.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12106.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12106.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2X8; -. DR STRING; 436308.Nmar_0210; -. DR EnsemblBacteria; ABX12106; ABX12106; Nmar_0210. DR KEGG; nmr:Nmar_0210; -. DR eggNOG; arCOG01972; Archaea. DR eggNOG; COG0526; LUCA. DR HOGENOM; HOG000292977; -. DR KO; K03671; -. DR OMA; YADWCSH; -. DR BioCyc; NMAR436308:GI3J-214-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0015035; F:protein disulfide oxidoreductase activity; IEA:InterPro. DR GO; GO:0045454; P:cell redox homeostasis; IEA:InterPro. DR GO; GO:0006662; P:glycerol ether metabolic process; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR005746; Thioredoxin. DR InterPro; IPR012336; Thioredoxin-like_fold. DR InterPro; IPR017937; Thioredoxin_CS. DR InterPro; IPR013766; Thioredoxin_domain. DR PANTHER; PTHR10438; PTHR10438; 1. DR Pfam; PF00085; Thioredoxin; 1. DR PIRSF; PIRSF000077; Thioredoxin; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR TIGRFAMs; TIGR01068; thioredoxin; 1. DR PROSITE; PS00194; THIOREDOXIN_1; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 108 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. FT DISULFID 32 35 Redox-active. FT {ECO:0000256|PIRSR:PIRSR000077-4}. SQ SEQUENCE 108 AA; 11944 MW; F47F306959CEA4C0 CRC64; MGITQISDAK SWEVDVINSD LPVFVDFWAE WCGPCRMVGP VVEELASDYD GKVKFVKVNV DEANELASKY NVFSIPTLIL LNKGEIVSQQ VGAASKESYK NMIDRALA // ID A9A581_NITMS Unreviewed; 46 AA. AC A9A581; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12280.1}; GN OrderedLocusNames=Nmar_0384 {ECO:0000313|EMBL:ABX12280.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12280.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12280.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12280.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12280.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12280; ABX12280; Nmar_0384. DR KEGG; nmr:Nmar_0384; -. DR BioCyc; NMAR436308:GI3J-400-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 46 AA; 5411 MW; EA5BCE939997622D CRC64; MKTENEVAEY RKEIEQRLVS TESMDAMKYY QGVLRALEWV VTGNDV // ID A9A1L7_NITMS Unreviewed; 517 AA. AC A9A1L7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13532.1}; GN OrderedLocusNames=Nmar_1636 {ECO:0000313|EMBL:ABX13532.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13532.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13532.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13532.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13532.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1636; -. DR EnsemblBacteria; ABX13532; ABX13532; Nmar_1636. DR KEGG; nmr:Nmar_1636; -. DR eggNOG; arCOG08812; Archaea. DR eggNOG; ENOG4111107; LUCA. DR HOGENOM; HOG000110006; -. DR OMA; PENTIVH; -. DR BioCyc; NMAR436308:GI3J-1681-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 517 AA; 58143 MW; C19C4770139B3588 CRC64; MKILNAILFA FLISSLCSSF AFGHGLGGEV LPPVKIENKD ASLSISISPS IYDPEESEKY ISLRLFDANT DAIIEHVTFE FELKKDGKQI FKEIFHGELG YLSIKVITEN SENITIDGEI EPVLGGWIKN ESSLIMRGPI FMSGGLYEYN VKILSIDSDS NVLSDEVQLQ GAISLAEIKS FQVSDSQNNE QTIQVISYFD KLDSFNFDSN KVTISMPFDW NQDLEQLSVV HQELRVPNTF GDFLFTTYQA IVNDIPLPDD TVNIDDYSFE DRTIHIVLNQ ELLKQIRNDA SKYSDDMIIF ELQPSDEVKF PLEFATPDLR YKVFLSWEPE VIKSGKEVTF FLSLEEIFSD KTKKIVEYDL SIVQNNSEIF SKHLVGNVNS ELPNSHKIQF NENQVGTANF VLSNIDGNSL SKGNFILVIH PSEPEIETVP AWIKNNAGWW AEGAIDDDAF VQGIQFLIKE NVLLIPATSS GENSGSNEIP AWIKNNAGWW AEGAIDDDAF VQGIQFLIKE GIIQIQN // ID A9A2G1_NITMS Unreviewed; 148 AA. AC A9A2G1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Putative signal-transduction protein with CBS domains {ECO:0000313|EMBL:ABX13200.1}; GN OrderedLocusNames=Nmar_1304 {ECO:0000313|EMBL:ABX13200.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13200.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13200.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13200.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13200.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G1; -. DR STRING; 436308.Nmar_1304; -. DR EnsemblBacteria; ABX13200; ABX13200; Nmar_1304. DR KEGG; nmr:Nmar_1304; -. DR eggNOG; arCOG00606; Archaea. DR eggNOG; COG0517; LUCA. DR HOGENOM; HOG000187907; -. DR OMA; IMSAPLI; -. DR BioCyc; NMAR436308:GI3J-1337-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 2. DR SMART; SM00116; CBS; 2. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 32 90 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 96 148 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 148 AA; 16276 MW; BFC13D4AC325A52A CRC64; MKFSKSFEIL RDTTFYMSSD TVHQKTLVKE IMSNSVISVD SSITATDAAK MMEDTGVGAI AVLENGSPVG IVTDRDFAIK ITAHSYPIDT PIRRIMSAPL ISIDPNSDLW TASDLMTTRN VRKLPVIDDD RIIGILTSSD LVKYFASL // ID A9A4Y2_NITMS Unreviewed; 287 AA. AC A9A4Y2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=HhH-GPD family protein {ECO:0000313|EMBL:ABX13436.1}; GN OrderedLocusNames=Nmar_1540 {ECO:0000313|EMBL:ABX13436.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13436.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13436.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13436.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13436.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Y2; -. DR STRING; 436308.Nmar_1540; -. DR EnsemblBacteria; ABX13436; ABX13436; Nmar_1540. DR KEGG; nmr:Nmar_1540; -. DR eggNOG; arCOG00464; Archaea. DR eggNOG; COG0122; LUCA. DR HOGENOM; HOG000060007; -. DR KO; K03660; -. DR OMA; EYAGYAQ; -. DR BioCyc; NMAR436308:GI3J-1582-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0006284; P:base-excision repair; IEA:InterPro. DR Gene3D; 1.10.1670.10; -; 1. DR Gene3D; 1.10.340.30; -; 1. DR InterPro; IPR011257; DNA_glycosylase. DR InterPro; IPR003265; HhH-GPD_domain. DR InterPro; IPR023170; HTH_base_excis_C. DR Pfam; PF00730; HhH-GPD; 1. DR SMART; SM00478; ENDO3c; 1. DR SUPFAM; SSF48150; SSF48150; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 108 272 ENDO3c. {ECO:0000259|SMART:SM00478}. SQ SEQUENCE 287 AA; 33909 MW; 9C97E5B92825FF21 CRC64; MKRFQSKMQI KQPIDVENSI NSGQVFLWRK NKEFWYGVNG QDILEVNKNG KIKSLQNYKT DFFRNNDNFD EIIKSISKDK IVKNAVKKYP GLRIIKQDPF QCLISFIVSS NSNIQKIKTN LENISQKFGE RVEYKDQEFF LFPNAKTLSK ASITEIKNCG VGYRAKFIKE ASKIFASEKI MIDDLKSSDY FDAKKKIRII PGIGNKVADC ILLFSLDKLE SFPLDRWMIR ILEKYYSKKF QIDTKTITEK QYDILHEKIV DYFGLYAGYA QQFLFKMERE NYQKKWL // ID A9A1I3_NITMS Unreviewed; 245 AA. AC A9A1I3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 39. DE SubName: Full=5 10-methylenetetrahydrofolate reductase-like protein {ECO:0000313|EMBL:ABX13162.1}; GN OrderedLocusNames=Nmar_1266 {ECO:0000313|EMBL:ABX13162.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13162.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13162.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13162.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13162.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I3; -. DR STRING; 436308.Nmar_1266; -. DR EnsemblBacteria; ABX13162; ABX13162; Nmar_1266. DR KEGG; nmr:Nmar_1266; -. DR eggNOG; arCOG00475; Archaea. DR eggNOG; COG0685; LUCA. DR OMA; TIRYEAN; -. DR BioCyc; NMAR436308:GI3J-1299-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004489; F:methylenetetrahydrofolate reductase (NAD(P)H) activity; IEA:InterPro. DR GO; GO:0006555; P:methionine metabolic process; IEA:InterPro. DR Gene3D; 3.20.20.220; -; 1. DR InterPro; IPR029041; FAD-linked_oxidoreductase-like. DR InterPro; IPR003171; Mehydrof_redctse. DR Pfam; PF02219; MTHFR; 1. DR SUPFAM; SSF51730; SSF51730; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 197 224 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 245 AA; 27549 MW; 5A673E024B644E11 CRC64; MTIRYEANPP KILPDVDTDQ SIKKFIERIK DISKKCDAIH LTENVLGFQR VSPLEVGKII KKEIPDLPIT VSLRVRDKSE EEISEFVENC INIGFSGILV LMGDPSQTGK TDSGQIPSLT VKKLKEKNVD SKIDLYLSVS NKPNFSKLGK KKDAKPKGFM TQVVQNVEQV QTLADNLKEF SVIPIILFPS QKNEKSAEFL DLDLESYSQE FEELLKKAHE ITGDVLLTSP NDFTGLNEFL SKTSF // ID A9A2K1_NITMS Unreviewed; 128 AA. AC A9A2K1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 49. DE SubName: Full=Ectoine synthase {ECO:0000313|EMBL:ABX13240.1}; GN OrderedLocusNames=Nmar_1344 {ECO:0000313|EMBL:ABX13240.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13240.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13240.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13240.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13240.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2K1; -. DR STRING; 436308.Nmar_1344; -. DR EnsemblBacteria; ABX13240; ABX13240; Nmar_1344. DR KEGG; nmr:Nmar_1344; -. DR eggNOG; ENOG4102SM2; Archaea. DR eggNOG; ENOG4111NEJ; LUCA. DR HOGENOM; HOG000078059; -. DR KO; K06720; -. DR OMA; DNMGFSF; -. DR BioCyc; NMAR436308:GI3J-1378-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033990; F:ectoine synthase activity; IEA:InterPro. DR GO; GO:0019491; P:ectoine biosynthetic process; IEA:InterPro. DR Gene3D; 2.60.120.10; -; 1. DR HAMAP; MF_01255; Ectoine_synth; 1. DR InterPro; IPR010462; Ectoine_synth. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin. DR Pfam; PF06339; Ectoine_synth; 1. DR ProDom; PD080544; Ectoine_synth; 1. DR SUPFAM; SSF51182; SSF51182; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 128 AA; 14734 MW; 21A8229C469B9223 CRC64; MIVRNIDSLH DAERKVTSDN WSSTRLLLKD DGMGFSFHQT TVFPKTETKI WYKHHLEAVF CLEGVGEIEE EDGTRHEIHP GTIYALDKHD KHVLRAFSEM KMICVFNPPL VGPETHDTQG VYPLLTEK // ID A9A4A5_NITMS Unreviewed; 545 AA. AC A9A4A5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=Thymidylate synthase complementing protein ThyX {ECO:0000313|EMBL:ABX12594.1}; GN OrderedLocusNames=Nmar_0698 {ECO:0000313|EMBL:ABX12594.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12594.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12594.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12594.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12594.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4A5; -. DR STRING; 436308.Nmar_0698; -. DR EnsemblBacteria; ABX12594; ABX12594; Nmar_0698. DR KEGG; nmr:Nmar_0698; -. DR eggNOG; arCOG01884; Archaea. DR eggNOG; COG1351; LUCA. DR HOGENOM; HOG000105671; -. DR OMA; MAYNIRW; -. DR BioCyc; NMAR436308:GI3J-723-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0050797; F:thymidylate synthase (FAD) activity; IEA:InterPro. DR GO; GO:0006231; P:dTMP biosynthetic process; IEA:InterPro. DR InterPro; IPR003669; Thymidylate_synthase_ThyX. DR Pfam; PF02511; Thy1; 2. DR SUPFAM; SSF69796; SSF69796; 3. DR PROSITE; PS51331; THYX; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 545 AA; 64235 MW; E2DACC13EC4F382C CRC64; MKSLTSILSE FSVKEKKILS DHFSNTDGNV FAIITPQQVD RGALMSRYSR TDKSMRRIFL DEFLNNKNRG EEFYNRVLLE YGDDSVAELG EAQIAIEGLS NIAVKKIEDR RIGLSYLEKS SRYVAWNKKE NGKYRFYRDP EIMKSKFADM YEDTCNFSFD VYSKNIEPMI NYVREKYPIE KYNFKDSRDG KEKSFSKLKN ESDIKSANMI YRGSTKAKAL DILRGLLPAS TLTNVGITGN GRAFEYLLTV LGSSELKEEQ DLASKIKKEL DKIIKSFVRR ADDKHGKAFQ KYLRDVKNKS KTISSKQIKS NPKKGTRTKL VDYESEKTAI DKIITSIMYE QSPSTSYQDI LQQVKKMSMQ NKAKIIDEFA KLRTNRRHRP SRAFENIYYT FDLYNNFGMF RDFHRHRALT LERQLLTTDH GYNIPNEIKI LGIEKDFKDC MNKTKETFDE IRKKYPEQGQ YVVNFAYNYP YFMKFNLREA CHLIELRTVP QGHVDYRRVA QQMFQQINKV HPNLSKIMKF VDMKEYDLER FESEKRTEEK RKKLK // ID A9A3U9_NITMS Unreviewed; 130 AA. AC A9A3U9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13361.1}; GN OrderedLocusNames=Nmar_1465 {ECO:0000313|EMBL:ABX13361.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13361.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13361.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13361.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13361.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1465; -. DR EnsemblBacteria; ABX13361; ABX13361; Nmar_1465. DR KEGG; nmr:Nmar_1465; -. DR BioCyc; NMAR436308:GI3J-1502-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 130 AA; 14857 MW; 17DC0716C7718BDB CRC64; MKLMTAESEL LAKEIFDADP QIVHLGLIDL EGNVLLDQSS AASEPTEPDE DRIAFYHQLD VRRHAREHLD EAYGQTDYVH IIREKMQQVI LYLPKITVYL TLEKSMTPDE VKAATQKIKF LDSDIMKSGV // ID A9A513_NITMS Unreviewed; 180 AA. AC A9A513; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11922.1}; GN OrderedLocusNames=Nmar_0022 {ECO:0000313|EMBL:ABX11922.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11922.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11922.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11922.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11922.1; -; Genomic_DNA. DR ProteinModelPortal; A9A513; -. DR STRING; 436308.Nmar_0022; -. DR EnsemblBacteria; ABX11922; ABX11922; Nmar_0022. DR KEGG; nmr:Nmar_0022; -. DR eggNOG; arCOG01471; Archaea. DR eggNOG; COG3945; LUCA. DR HOGENOM; HOG000110475; -. DR OMA; HHAREEN; -. DR BioCyc; NMAR436308:GI3J-22-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR012312; Haemerythrin-like. DR Pfam; PF01814; Hemerythrin; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 130 Hemerythrin. {ECO:0000259|Pfam:PF01814}. SQ SEQUENCE 180 AA; 21785 MW; 7ADA46C1B6A5F83E CRC64; MSGTETLRED HKQIRRLEKV IIKCYTELYA GKNIPFSDID KITLIIEEFL DSIHYSREED SYFPCVATYD HLKQEIRGLL IEHEFSRRIA LQIKKHLKRW KEGEDAREPV ARYLKTYSVY LMDHMNKEED FFDKAETEVL SKEEELDMYE QFRSVMTISK KMEDMIKEIE YLENQPWVQN // ID A9A221_NITMS Unreviewed; 338 AA. AC A9A221; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Galactose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:ABX12434.1}; GN OrderedLocusNames=Nmar_0538 {ECO:0000313|EMBL:ABX12434.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12434.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12434.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12434.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12434.1; -; Genomic_DNA. DR ProteinModelPortal; A9A221; -. DR STRING; 436308.Nmar_0538; -. DR EnsemblBacteria; ABX12434; ABX12434; Nmar_0538. DR KEGG; nmr:Nmar_0538; -. DR eggNOG; arCOG00422; Archaea. DR eggNOG; COG1085; LUCA. DR HOGENOM; HOG000106304; -. DR KO; K00965; -. DR OMA; EIRKHYF; -. DR BioCyc; NMAR436308:GI3J-560-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008108; F:UDP-glucose:hexose-1-phosphate uridylyltransferase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006012; P:galactose metabolic process; IEA:InterPro. DR Gene3D; 3.30.428.10; -; 2. DR InterPro; IPR001937; GalP_UDPtransf1. DR InterPro; IPR005849; GalP_Utransf_N. DR InterPro; IPR011146; HIT-like. DR PANTHER; PTHR11943; PTHR11943; 2. DR Pfam; PF01087; GalP_UDP_transf; 1. DR PIRSF; PIRSF000808; GalT; 1. DR SUPFAM; SSF54197; SSF54197; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotidyltransferase {ECO:0000313|EMBL:ABX12434.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12434.1}. FT DOMAIN 81 173 GalP_UDP_transf. FT {ECO:0000259|Pfam:PF01087}. FT ACT_SITE 163 163 Tele-UMP-histidine intermediate. FT {ECO:0000256|PIRSR:PIRSR000808-1}. SQ SEQUENCE 338 AA; 38177 MW; 470D03814A9B2400 CRC64; MGDMRKDYVS ERFMIVSKKE DKVKDPKKSP FAPGNESMTN PSVLSLVAKD GMLQRLQDSD DEFVEGWSIR VFESKNPIVS VDTENSYSDR PFYSEPAYGY HYVVVASPNP KDTFATIDTE QWSNILVVVQ DRLRWLYTQK GVTYVSIYAD QGELSGSANS HPHLNILTFS TIPPIIEEEA EASHKILNEK GVCPMCQTVN EEIGGPRQVL QTEGFIAFCP WSPSYPYEFW IAPKKHTTSF SKITQKEIND LSLILRATLG GLSQTIKNVS YNLVFHLSPE KKNSRQIHWH IEIYPITKSW SGLERGYGIF LNDISPEEAA EKLGAACRKE LANLVGIV // ID A9A634_NITMS Unreviewed; 221 AA. AC A9A634; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 62. DE RecName: Full=3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|RuleBase:RU003843}; DE Short=DHBP synthase {ECO:0000256|RuleBase:RU003843}; DE EC=4.1.99.12 {ECO:0000256|RuleBase:RU003843}; GN OrderedLocusNames=Nmar_1616 {ECO:0000313|EMBL:ABX13512.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13512.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13512.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13512.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of D-ribulose 5-phosphate to CC formate and 3,4-dihydroxy-2-butanone 4-phosphate. CC {ECO:0000256|RuleBase:RU003843}. CC -!- CATALYTIC ACTIVITY: D-ribulose 5-phosphate = formate + L-3,4- CC dihydroxybutan-2-one 4-phosphate. {ECO:0000256|RuleBase:RU003843}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|RuleBase:RU003843}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|RuleBase:RU003843}; CC Note=Binds 2 divalent metal cations per subunit. Magnesium or CC manganese. {ECO:0000256|RuleBase:RU003843}; CC -!- PATHWAY: Cofactor biosynthesis; riboflavin biosynthesis; 2- CC hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step CC 1/1. {ECO:0000256|RuleBase:RU003843}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|RuleBase:RU003843}. CC -!- SIMILARITY: Belongs to the DHBP synthase family. CC {ECO:0000256|RuleBase:RU003843}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13512.1; -; Genomic_DNA. DR ProteinModelPortal; A9A634; -. DR STRING; 436308.Nmar_1616; -. DR EnsemblBacteria; ABX13512; ABX13512; Nmar_1616. DR KEGG; nmr:Nmar_1616; -. DR eggNOG; arCOG01320; Archaea. DR eggNOG; COG0108; LUCA. DR HOGENOM; HOG000115441; -. DR KO; K02858; -. DR OMA; QMAKLIR; -. DR BioCyc; NMAR436308:GI3J-1660-MONOMER; -. DR UniPathway; UPA00275; UER00399. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008686; F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.90.870.10; -; 1. DR InterPro; IPR017945; DHBP_synth_RibB-like_a/b_dom. DR InterPro; IPR000422; DHBP_synthase_RibB. DR Pfam; PF00926; DHBP_synthase; 1. DR SUPFAM; SSF55821; SSF55821; 1. DR TIGRFAMs; TIGR00506; ribB; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|RuleBase:RU003843}; KW Magnesium {ECO:0000256|RuleBase:RU003843}; KW Manganese {ECO:0000256|RuleBase:RU003843}; KW Metal-binding {ECO:0000256|RuleBase:RU003843}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Riboflavin biosynthesis {ECO:0000256|RuleBase:RU003843}. SQ SEQUENCE 221 AA; 24475 MW; 933C56566F45E580 CRC64; MSLETALQSL KRGEFVLLFD SAGRENEIDM MVAAEFVTPE HVARMRQHAG GLLCIAIDNQ FANSLELKYM HDILADSSIS NKEMIMGLAP YGDHPTFSLS VNHYQTYTGI TDNDRSLTIR EMANIYNVEN KQKKFASSFK TPGHVPLLIA SKGLLAARQG HTEMSVYLTQ IAGLTPVSAI CEMMDAETYT ALSVDKAEKF AKQNGIPLID GKELLEYAKV H // ID A9A1S3_NITMS Unreviewed; 261 AA. AC A9A1S3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 38. DE SubName: Full=Aminoglycoside N3'-acetyltransferase {ECO:0000313|EMBL:ABX12044.1}; GN OrderedLocusNames=Nmar_0144 {ECO:0000313|EMBL:ABX12044.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12044.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12044.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12044.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12044.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1S3; -. DR STRING; 436308.Nmar_0144; -. DR EnsemblBacteria; ABX12044; ABX12044; Nmar_0144. DR KEGG; nmr:Nmar_0144; -. DR eggNOG; arCOG06298; Archaea. DR eggNOG; COG2746; LUCA. DR KO; K00662; -. DR OMA; TFIHYIE; -. DR BioCyc; NMAR436308:GI3J-147-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046353; F:aminoglycoside 3-N-acetyltransferase activity; IEA:InterPro. DR GO; GO:0046677; P:response to antibiotic; IEA:InterPro. DR InterPro; IPR003679; Amioglycoside_AcTrfase. DR Pfam; PF02522; Antibiotic_NAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12044.1}. SQ SEQUENCE 261 AA; 29872 MW; 82E7FAB448428A4D CRC64; MKKTYDFTKE EIVTKLKQIQ IKKNDSIFIH SNLGLFGKLP NVKTADEYCT VFKDAIFDVI GEEGTLVIPT FSLSFCKNEV FDKKYTPSFE CGIFSEFIRT DSSSLRSDDA NFSIAAIGKN AKFFTEFSPI DSFGVDSFWE KFLNVDGKLC RFNLPANYVT FIHYIEKFLN VPYRYDKIFL GYSLIDGLQT KRKFSHFVRD LSNENHSTDL TKLEKISIDL GLLHKTNLGR GLIYSISSQS LFSLVKSEIR KDPSLLITGK I // ID A9A3I5_NITMS Unreviewed; 121 AA. AC A9A3I5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12917.1}; GN OrderedLocusNames=Nmar_1021 {ECO:0000313|EMBL:ABX12917.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12917.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12917.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12917.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12917.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1021; -. DR EnsemblBacteria; ABX12917; ABX12917; Nmar_1021. DR KEGG; nmr:Nmar_1021; -. DR eggNOG; arCOG08738; Archaea. DR eggNOG; ENOG4110ZWH; LUCA. DR HOGENOM; HOG000023865; -. DR OMA; ESEAIHK; -. DR BioCyc; NMAR436308:GI3J-1052-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR018649; SHOCT. DR Pfam; PF09851; SHOCT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 92 118 SHOCT. {ECO:0000259|Pfam:PF09851}. SQ SEQUENCE 121 AA; 13418 MW; 15073F52A93DD57D CRC64; MATKKKVGYI ERFLKKADKA IDDGVKRADE VLEDAVEFGT MTAKQAAKAS KDIQLRAKKE SEAIHKKGTK KIEEGLSAAK NATSNTEEDL ATLEKLGKLR KAGVLTEKEF QAKKKKILER I // ID A9A4Y7_NITMS Unreviewed; 1269 AA. AC A9A4Y7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ABX13441.1}; GN OrderedLocusNames=Nmar_1545 {ECO:0000313|EMBL:ABX13441.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13441.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13441.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13441.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the peptidase S8 family. CC {ECO:0000256|RuleBase:RU003355}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13441.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Y7; -. DR STRING; 436308.Nmar_1545; -. DR EnsemblBacteria; ABX13441; ABX13441; Nmar_1545. DR KEGG; nmr:Nmar_1545; -. DR eggNOG; arCOG00704; Archaea. DR eggNOG; COG1404; LUCA. DR HOGENOM; HOG000111054; -. DR OMA; HVISNSW; -. DR BioCyc; NMAR436308:GI3J-1588-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro. DR Gene3D; 3.40.50.200; -; 3. DR InterPro; IPR000209; Peptidase_S8/S53_dom. DR InterPro; IPR023827; Peptidase_S8_Asp-AS. DR InterPro; IPR023828; Peptidase_S8_Ser-AS. DR InterPro; IPR015500; Peptidase_S8_subtilisin-rel. DR PANTHER; PTHR10795; PTHR10795; 4. DR Pfam; PF00082; Peptidase_S8; 1. DR PRINTS; PR00723; SUBTILISIN. DR SUPFAM; SSF52743; SSF52743; 2. DR PROSITE; PS00136; SUBTILASE_ASP; 1. DR PROSITE; PS00138; SUBTILASE_SER; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 1240 1263 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 145 698 Peptidase S8. {ECO:0000259|Pfam:PF00082}. SQ SEQUENCE 1269 AA; 139644 MW; 269FDD595726F6B1 CRC64; MPKAAIFFSI LLLSSFLANS YAFTGDDVYL QDNSQTIEFT SQIIDVDSNF FVENHFKRYL IFGTNTQNYD YLENNSIYGI KSDHGFFYVS LLSEKSASLL ASQGIHIIED SKLDFHSSDN EIVDATRIGE ITGSKNAQLN YNASGNGTVI AIIDTGVDFS NPDIQHSLAR DELNHPLMLD PDGQGIILTN STFFAYIDEN EIIRNYTKPI PEHMISSAYV TREGIFLDLS QGGKGSDIQI YNSFFPQIGS SPIFKGTLDK DMKIGQDNRN YIKSKSGEYR LGVIYQGGLS GPLAKVQVVP VLVVDSFIPG VYDTIIPDMS TSWEDYTRFS LPSGQQPNYD FDFTDEKPIV LGSGNEFLVY DSNNDGKTDY SAGTIGAQVL DVYGVIRNNS TEIDDKLNAI NGTLLPALDP NGEFFGIMTD FMGHGTSSTA SIVSRGQETY DIYNDTKKYS ITGVAPGAKI LPVKALWFGD TVYAWLWSAG FENGDNIWEF SGKPRVDIIS NSWGISNFPS FKSAPGMDVL SLIQSILSTP HSLDDDYPGV VMVSSAGNSG HGYGTIGLPN ASPFGITVGA TTNNVFVGYG PFKDQPRFGN STNHYNHVVD FSSRGPTAIG DPKPDVMSLG AHGFVPSNMI KTTKDSKDES FSLFGGTSMA APLVSGSAAI LIEEMTKQSQ DYDSFMIKNI LMSTAVDMNN DPFTQGSGLT NVNSALDYVH GKNGVFMVTN ENSYENLKKI LEPSIENFNH TAIGFQQFKL PSHSLPMASW FGGQLIAGDR TTATFTISNP TENEIIVDVK PETLALIKHT QFNGTTTPRQ HDSILNKTDT FIPNYVKLSD VKPHEDLEDF FDEKNPIPDE SSLMILNVNF PFDQFMNSTS DVYADDLKIS SLYLYDWLDN NNDTKITSDE ISLVNRGGSW GTVQEIRVSE PNEKFDGVPL VGVYPVPTRY SYWLGNTNQN STSMDYTISA SYYQNTKWSM LWPKSETITV PSNGVSTVDV TLVTPTDLET GVYQGFLNFQ SKMHEVNTPV SFVIKEPITE NDSTIIIHGK QNDDVLYGNG YTKGAFDMTN RYMAGDWRQY YFDVQNEFVN SAAIELSWTS DDTNLSVFVM DPLGQIIQTN VPSGVFGHFL GWPSLDWLGN SLFSQGGGFF PVKNKDDTST VLYVPINQTG TYTLLTHSTL FGGNSTTEPI TLAAKFTNIS TELVSQNSEI IIEDETSSDL EKTTKNETIS IEKETIVKET IISSNDSDSL LLVGIGIGIA IGIAIGIVSI IVIRQKPAK // ID A9A2Z7_NITMS Unreviewed; 593 AA. AC A9A2Z7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 63. DE RecName: Full=Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; GN Name=infB {ECO:0000256|HAMAP-Rule:MF_00100}; GN OrderedLocusNames=Nmar_0229 {ECO:0000313|EMBL:ABX12125.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12125.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12125.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12125.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Function in general translation initiation by promoting CC the binding of the formylmethionine-tRNA to ribosomes. Seems to CC function along with eIF-2. {ECO:0000256|HAMAP-Rule:MF_00100, CC ECO:0000256|RuleBase:RU000644}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. IF-2 CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00100, CC ECO:0000256|RuleBase:RU000644}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12125.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z7; -. DR STRING; 436308.Nmar_0229; -. DR EnsemblBacteria; ABX12125; ABX12125; Nmar_0229. DR KEGG; nmr:Nmar_0229; -. DR eggNOG; arCOG01560; Archaea. DR eggNOG; COG0532; LUCA. DR HOGENOM; HOG000105770; -. DR KO; K03243; -. DR OMA; PMEKEIM; -. DR BioCyc; NMAR436308:GI3J-235-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.10050; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00100_A; IF_2_A; 1. DR InterPro; IPR029459; EFTU-type. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR004544; TIF_aIF-2_arc. DR InterPro; IPR023115; TIF_IF2_dom3. DR InterPro; IPR009000; Transl_B-barrel. DR Pfam; PF14578; GTP_EFTU_D4; 1. DR Pfam; PF11987; IF-2; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF52156; SSF52156; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00491; aIF-2; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW GTP-binding {ECO:0000256|HAMAP-Rule:MF_00100}; KW Initiation factor {ECO:0000256|HAMAP-Rule:MF_00100, KW ECO:0000256|RuleBase:RU000644, ECO:0000313|EMBL:ABX12125.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00100}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00100, KW ECO:0000256|RuleBase:RU000644, ECO:0000313|EMBL:ABX12125.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 221 Tr-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51722}. FT NP_BIND 77 81 GTP. {ECO:0000256|HAMAP-Rule:MF_00100}. SQ SEQUENCE 593 AA; 65783 MW; 9FA0F57357477075 CRC64; MQIRQPIVAV LGHVDSGKTS LLDRIRGTGV QGREAGGITQ HIGASFLPTE TIKETCGPLY KKLEQSENKV PGILVIDTPG HEVFTNLRSR GGSAADIAVL VVDVNRGFQP QTNESLKILQ SRKVPFVVAL NKCDQISGWR KSETSFISQA IKEQDASIQA DLDQKIYDVV GTLSVLGYQS EAFYRVKDFK SEIAIVPISA RSGVGIPELL SVLVGLTQQY LQKRLSQEEK DPRGIVLEVK DEVGLGQTAN IILIDGSIKK EDSIVVAKRD GVIVTKPKAL LLPKALDEMR DPRDKFKPTP QVDAAAGLKI ASPELEGVLP GSTLYVARND DEVTKYTNLI ESEMKSMFVD TETNGIILKC DTIGSLEAIV EMLRRSQVPV AKADIGPVNR RDVIEAKAIK EKDRHLGIVL AFNVKVLPDA KEESEISHIK IFEDKVIYSL IDNYNAWVEE DTAHQEDAIF SELTPVSKFT FLKGMVFRNN NPAVFGIRID VGTLKHKIPF MNSDGRRIGN IHQLQHDKKT VTSAKTGDEV ACSVQDVTIG RQIFEEEVFY TFPPSHEAKQ LLNKFMHKLS TEEQEVLNEI VEIQRKKEAA YAY // ID A9A610_NITMS Unreviewed; 127 AA. AC A9A610; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13488.1}; GN OrderedLocusNames=Nmar_1592 {ECO:0000313|EMBL:ABX13488.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13488.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13488.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13488.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13488.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1592; -. DR EnsemblBacteria; ABX13488; ABX13488; Nmar_1592. DR KEGG; nmr:Nmar_1592; -. DR eggNOG; arCOG07348; Archaea. DR eggNOG; ENOG410Z81R; LUCA. DR HOGENOM; HOG000105141; -. DR OMA; IHEVIEY; -. DR BioCyc; NMAR436308:GI3J-1636-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 127 AA; 14294 MW; FACF592DDD4AE876 CRC64; MEISVEPWKK LVIHEVIEYK FDDWVKQIAF STRSSGGAIP TMQWTNGIVF SPANFPTTNA TVEEQLKGIL HWSSVSFAIK EKFEKQIVKE NATINLVDVS VNEIFKELAI SLKSQSKFTN SESGNGQ // ID A9A2W2_NITMS Unreviewed; 160 AA. AC A9A2W2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13639.1}; GN OrderedLocusNames=Nmar_1743 {ECO:0000313|EMBL:ABX13639.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13639.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13639.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13639.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13639.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1743; -. DR EnsemblBacteria; ABX13639; ABX13639; Nmar_1743. DR KEGG; nmr:Nmar_1743; -. DR eggNOG; arCOG10601; Archaea. DR eggNOG; ENOG4110ZZ8; LUCA. DR BioCyc; NMAR436308:GI3J-1790-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 160 AA; 18172 MW; A1EACEA4C5A3303E CRC64; MMARIKLKLG ENEIEVDSRD FYVDNQTLGE IIQNISNHLP ESHAKIVYET EPVTTPIEIP TQSGLESLDD AEIFEPEFNE PTRIAANEVK SKLRILETSR FFDSPRTVSE VVEQLSEYGW AASPLDVSKA LAKMASNKEI LKNSNENRTH YFVEESLITN // ID A9A2S0_NITMS Unreviewed; 215 AA. AC A9A2S0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13597.1}; GN OrderedLocusNames=Nmar_1701 {ECO:0000313|EMBL:ABX13597.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13597.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13597.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13597.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13597.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13597; ABX13597; Nmar_1701. DR KEGG; nmr:Nmar_1701; -. DR eggNOG; arCOG00790; Archaea. DR eggNOG; COG1468; LUCA. DR HOGENOM; HOG000109125; -. DR KO; K07464; -. DR OMA; YITGDRK; -. DR BioCyc; NMAR436308:GI3J-1746-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 215 AA; 25218 MW; AF0FC4C795CE689B CRC64; MMGDRDFRTT IQNAIKSIGN ELEIDIDSKD FETIHLQEVV RCMRRSYYDR VEPLEIERRG FNELLSGLLR KLEYGSNPKD FDINEIKLRG QADMMVDDAI LLFRSATEEL ENPHASDVLY LNACMWIYDK EDGMIVYITG DRKESTFSLT RNKKMFEDTI RRVRVLNNLL KEQKTPILEP SAECTECQYY ERCFTKRKNT KQTSLAEMLG LGKQD // ID A9A2P3_NITMS Unreviewed; 247 AA. AC A9A2P3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Transcriptional regulator, TrmB {ECO:0000313|EMBL:ABX13570.1}; GN OrderedLocusNames=Nmar_1674 {ECO:0000313|EMBL:ABX13570.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13570.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13570.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13570.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13570.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1674; -. DR EnsemblBacteria; ABX13570; ABX13570; Nmar_1674. DR KEGG; nmr:Nmar_1674; -. DR eggNOG; arCOG02611; Archaea. DR eggNOG; arCOG03065; Archaea. DR eggNOG; COG3398; LUCA. DR BioCyc; NMAR436308:GI3J-1719-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 2. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 247 AA; 28101 MW; 48F0414ACCB8DDEA CRC64; MLSMRQKLTA KVNSETIQKI LESTDQFKTV SEISTECKIP KSTTYRKIKY LQEIGMLEVT GFITDGGRIN KYKCGKLLRY GKYNPKVKKI LSIITSNPGI CYNELQESSG IPNGTLSHYV SSMVKDSKII VKRTSRRSWF FLPNAKPSEI NLIINLRKET GKNILSFLLL NGSSTFSDIQ KSTIKAPATI SLTITHLVEL GLVRRIPGTR PKYELTDREL TFECIKKLEP DTSDRLKERF ADTFSYL // ID A9A5L9_NITMS Unreviewed; 128 AA. AC A9A5L9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12730.1}; GN OrderedLocusNames=Nmar_0834 {ECO:0000313|EMBL:ABX12730.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12730.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12730.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12730.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12730.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0834; -. DR EnsemblBacteria; ABX12730; ABX12730; Nmar_0834. DR KEGG; nmr:Nmar_0834; -. DR eggNOG; arCOG10552; Archaea. DR eggNOG; ENOG411112Z; LUCA. DR BioCyc; NMAR436308:GI3J-861-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 128 AA; 15238 MW; 8746D2BA2EDE053D CRC64; MKLTVVTYIE YLKSILLQIL ESYEILKEIQ DKPGDLDLIK KESLKINGFL KVVSNKVEDT KIPHSDFKPL KSKFKSYLEN YFFEQEIETM APLYQDDVHR IKNMRLKILE SFDENKIMTD IKEFVDKI // ID A9A238_NITMS Unreviewed; 480 AA. AC A9A238; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=UbiD family decarboxylase {ECO:0000313|EMBL:ABX12451.1}; GN OrderedLocusNames=Nmar_0555 {ECO:0000313|EMBL:ABX12451.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12451.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12451.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12451.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12451.1; -; Genomic_DNA. DR ProteinModelPortal; A9A238; -. DR STRING; 436308.Nmar_0555; -. DR EnsemblBacteria; ABX12451; ABX12451; Nmar_0555. DR KEGG; nmr:Nmar_0555; -. DR eggNOG; arCOG01671; Archaea. DR eggNOG; COG0043; LUCA. DR HOGENOM; HOG000227663; -. DR KO; K03182; -. DR OMA; DFQEWCQ; -. DR BioCyc; NMAR436308:GI3J-577-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016831; F:carboxy-lyase activity; IEA:InterPro. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR022390; HBDC. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR InterPro; IPR002830; UbiD. DR Pfam; PF01977; UbiD; 1. DR SUPFAM; SSF50475; SSF50475; 1. DR TIGRFAMs; TIGR03701; mena_SCO4490; 1. DR TIGRFAMs; TIGR00148; TIGR00148; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 480 AA; 53455 MW; C79A4AA054A4DE8A CRC64; MPIEDIQEFI SELEKNGELK RVKTQVDSNL EIAEIMRREM YSNGPAILFE DVKDYDMPVL GNAFGSMKRL EIGLEMTDFT EIGQRIADMT KMDVPSGLLN KIKKLPELSK MTASFPKSEV SGPVTETTST DASFDDLPIL KSWPNDAGRF ITLGLVATKH PETGVRNLGV YRMQIVDKTH ALMHWQKHKR GAHHGDISKD KGEKIPTAII IGGEPATVFS SIAPVPEGLD KYLFAGITRK EGIKTVKCKT IDLDVPANAE IVLEGYVDPA DIRDEGPFGD HTGYYTPVEP YPTFTLTGIM RRKNPIYVTT VVGKPILEDA YIGKVIERSF LPLIQMFHPE VVDFSMPAAG WFQGFAIISI KKRYPGQAKK VMMGLWGMGQ LSLTKMFVVV DEDINVHDIN DVIWAITTRA DAARDTTIIN NAPTDTLDPA SPLVNLGSKM GIDATQKTKE EGYEREIQQQ VKVDEETKNL VDSKWSDYGL // ID A9A3S8_NITMS Unreviewed; 583 AA. AC A9A3S8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13340.1}; GN OrderedLocusNames=Nmar_1444 {ECO:0000313|EMBL:ABX13340.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13340.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13340.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13340.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13340.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1444; -. DR EnsemblBacteria; ABX13340; ABX13340; Nmar_1444. DR KEGG; nmr:Nmar_1444; -. DR eggNOG; arCOG06613; Archaea. DR eggNOG; ENOG410XQE9; LUCA. DR BioCyc; NMAR436308:GI3J-1480-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR018891; Abortive_phage_infection. DR Pfam; PF10592; AIPR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 583 AA; 67018 MW; 57ED7ADEF2F60EE6 CRC64; MSQNGNGLLE YIPGSHTLLV QKNSSPPLEG FAENIRGSIH EYAENSKSDV EKGNNFLHWI LTRVFEATED DAADAIVDGA NDLGIDAYLP VDFSDNTIRL FQSKYGTSHS LEAIAKFKED AKRLLAKDVT KMRPELAQLV TKIKEKNLKV KCCYVTDQKV DYHDEFVEVI DEEKIIQKLW DRIKKPAAGK KSSIRLEKML RHENTILGIL KLRELTEFVS KNRDYVFESN IRQWMQFKTT VNKGLRDTLQ SNPNKFFFYN NGITIVVSDF SELGENMIEL HAPQIVNGAQ TSNSILDHSK RTKNMDGSMT VTIIKADDEQ EQNNITKYRN SQNSVRGKDL VSLMDFHKSI KSQLKSCGYF YEIQAGSFDT KSKSKQCDYA GDSTYNNYLP DNHKKVIVAK DAIQCLVAGI EQRPTEAYSS PAQFLPRGSK YDDIFNDNLK DDYRILLYPY LVKEYAKKSL KYGKKGGHKT KRYATLFYVA VYFRILHKKI LESKGDFKGD IRKIEPVFRS FKLNSRILKL ADVIVTKFLE DTVVDDEIEM ANTKHNFFSQ HVWNDTMLRV IDKKIRQEED EILALKKLTN SLL // ID A9A345_NITMS Unreviewed; 174 AA. AC A9A345; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE SubName: Full=NADH-quinone oxidoreductase, B subunit {ECO:0000313|EMBL:ABX12173.1}; DE EC=1.6.99.5 {ECO:0000313|EMBL:ABX12173.1}; GN OrderedLocusNames=Nmar_0277 {ECO:0000313|EMBL:ABX12173.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12173.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12173.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12173.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the complex I 20 kDa subunit family. CC {ECO:0000256|RuleBase:RU004464}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12173.1; -; Genomic_DNA. DR ProteinModelPortal; A9A345; -. DR STRING; 436308.Nmar_0277; -. DR EnsemblBacteria; ABX12173; ABX12173; Nmar_0277. DR KEGG; nmr:Nmar_0277; -. DR eggNOG; arCOG01554; Archaea. DR eggNOG; COG0377; LUCA. DR HOGENOM; HOG000228250; -. DR KO; K00331; -. DR OMA; RLDYYIP; -. DR BioCyc; NMAR436308:GI3J-287-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0048038; F:quinone binding; IEA:InterPro. DR Gene3D; 3.40.50.700; -; 1. DR InterPro; IPR006137; NADH_UbQ_OxRdtase-like_20kDa. DR InterPro; IPR006138; NADH_UQ_OxRdtase_20Kd_su. DR Pfam; PF01058; Oxidored_q6; 1. DR TIGRFAMs; TIGR01957; nuoB_fam; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|RuleBase:RU004464}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|RuleBase:RU004464}; KW Iron-sulfur {ECO:0000256|RuleBase:RU004464}; KW Metal-binding {ECO:0000256|RuleBase:RU004464}; KW NAD {ECO:0000256|RuleBase:RU004464}; KW Oxidoreductase {ECO:0000256|RuleBase:RU004464, KW ECO:0000313|EMBL:ABX12173.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 51 158 Oxidored_q6. {ECO:0000259|Pfam:PF01058}. SQ SEQUENCE 174 AA; 19333 MW; 3FCDBDB86284DBE8 CRC64; MLKDLVTPEN ANVFVGKLGD ILEKAIDKPL GYAINWGRIW SLWPVHIETA CCSVEFGAAS SPRYDVERFG IIEAFGSLRQ CDLVVVQGTI TRKMAPRLRL VYDQMPEPKY VIAMGACAIT GGLYFDSYNV LPGIDGVIPV DVYVPGCPPR PETLIQGCIL LQEKIKRMKA RKFV // ID A9A551_NITMS Unreviewed; 251 AA. AC A9A551; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Glutamate racemase {ECO:0000313|EMBL:ABX11960.1}; DE EC=5.1.1.3 {ECO:0000313|EMBL:ABX11960.1}; GN OrderedLocusNames=Nmar_0060 {ECO:0000313|EMBL:ABX11960.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11960.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11960.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11960.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11960.1; -; Genomic_DNA. DR ProteinModelPortal; A9A551; -. DR STRING; 436308.Nmar_0060; -. DR EnsemblBacteria; ABX11960; ABX11960; Nmar_0060. DR KEGG; nmr:Nmar_0060; -. DR eggNOG; ENOG4102TXR; Archaea. DR eggNOG; COG0796; LUCA. DR KO; K01776; -. DR OMA; IIYFADR; -. DR BioCyc; NMAR436308:GI3J-60-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008881; F:glutamate racemase activity; IEA:UniProtKB-EC. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.1860; -; 1. DR InterPro; IPR015942; Asp/Glu/hydantoin_racemase. DR InterPro; IPR001920; Asp/Glu_race. DR Pfam; PF01177; Asp_Glu_race; 1. DR SUPFAM; SSF53681; SSF53681; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX11960.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 251 AA; 28545 MW; 34A1B1524CCF27F7 CRC64; MAKIAVFDSG LGSLSIIKEM QKAFKSEIIY FADQQSYPYG KKSQAQLERI MRKSINLLEK FSPDFIVVAS NTPSLMLDLG TNRIFVVKPP LKEAKKITKS KQIGILATES ATKSKGLSKY IQENIPKSFK IFKINGTKLV DLVESGKFLT EKKYCEKIIK KKLEILNENQ IDAVTLSSTH LPFLKKYLEK EFPNIQFVDP GNIVAQKIYF KIKNKQSKKN SLKIFTSGNT KEFQLKLSKI GIKNKVNFLS F // ID A9A330_NITMS Unreviewed; 118 AA. AC A9A330; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12158.1}; GN OrderedLocusNames=Nmar_0262 {ECO:0000313|EMBL:ABX12158.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12158.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12158.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12158.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12158.1; -; Genomic_DNA. DR ProteinModelPortal; A9A330; -. DR STRING; 436308.Nmar_0262; -. DR EnsemblBacteria; ABX12158; ABX12158; Nmar_0262. DR KEGG; nmr:Nmar_0262; -. DR eggNOG; arCOG01845; Archaea. DR eggNOG; COG2151; LUCA. DR HOGENOM; HOG000109796; -. DR OMA; HLTSPFC; -. DR BioCyc; NMAR436308:GI3J-270-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002744; DUF59. DR Pfam; PF01883; DUF59; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 24 95 DUF59. {ECO:0000259|Pfam:PF01883}. SQ SEQUENCE 118 AA; 13236 MW; C663F57EE6699C1B CRC64; MVIYSIDAFA HMSQDIKQLR VKLFDELSKI VDPEINTSIV ELELIDEVDI NGSDVKVDLH LTSPFCPAVF GFKICQDIHD NLLKVDGVDD VKVNVSNHFM AEQINNQVNN SPNPKKLG // ID A9A111_NITMS Unreviewed; 420 AA. AC A9A111; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Protein synthesis factor GTP-binding {ECO:0000313|EMBL:ABX11972.1}; GN OrderedLocusNames=Nmar_0072 {ECO:0000313|EMBL:ABX11972.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11972.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11972.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11972.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11972.1; -; Genomic_DNA. DR ProteinModelPortal; A9A111; -. DR SMR; A9A111; 18-419. DR STRING; 436308.Nmar_0072; -. DR EnsemblBacteria; ABX11972; ABX11972; Nmar_0072. DR KEGG; nmr:Nmar_0072; -. DR eggNOG; arCOG01563; Archaea. DR eggNOG; COG5257; LUCA. DR HOGENOM; HOG000229292; -. DR KO; K03242; -. DR OMA; IAANEPC; -. DR BioCyc; NMAR436308:GI3J-73-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR022424; TIF2_gsu. DR InterPro; IPR015256; TIF2_gsu_C. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR009001; Transl_elong_EF1A/Init_IF2_C. DR Pfam; PF09173; eIF2_C; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF50465; SSF50465; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR TIGRFAMs; TIGR03680; eif2g_arch; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 215 Tr-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51722}. SQ SEQUENCE 420 AA; 45283 MW; E5A87EF9A0BCFDFC CRC64; MHWRETLPDW YIEKYGYQPC VNIGTAGHVD HGKTTLIQAL TGSWTSVHSQ ELKRGITIRV GYSDAAFYKC KNCEEPLGYS TTPKCNNCGG ESELSRVVSF VDSPGHESLM ANMLSGSALM DGALLLVAAN EKVPRPQTKE HLLALQTLGI QQIVVVQNKV DLLSYKEALA NYQDITKFVK GSHAAKAPII PISAQSGLNV DALIGSIESN IKTPDRDEKQ DTVMHVLRSF DVNKPGTKLK NIKGGVIGGS LTQGIFNVGD EIEIKPGILN EKKKNYEPLV TEITSLGTAA GIVESVKPGG LVAIGTKLDP SMTRSDSFIG SVIGKPGTLP ENSTKLKLDV TLFDSAVGTT EDIKVQPIQT GELLRVNIGT APLLGKVTKV KSKNTEIELR RPACIFEGGN VALSRRIDER WRLIGAGIVG // ID A9A484_NITMS Unreviewed; 256 AA. AC A9A484; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12573.1}; GN OrderedLocusNames=Nmar_0677 {ECO:0000313|EMBL:ABX12573.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12573.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12573.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12573.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12573.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0677; -. DR EnsemblBacteria; ABX12573; ABX12573; Nmar_0677. DR KEGG; nmr:Nmar_0677; -. DR eggNOG; arCOG04668; Archaea. DR eggNOG; ENOG410Y7YM; LUCA. DR HOGENOM; HOG000106049; -. DR OMA; DGRWHKR; -. DR BioCyc; NMAR436308:GI3J-702-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 256 AA; 30367 MW; DD69AB07048E08E7 CRC64; MKTSKIIIYD EPTVPEIQIN NIEKFLKETF HVEIEIRKNF FENTNEKLFQ EIATTRIYEL KKPFSSHIPT ESEIQMEKEN TDNSQNEEKI LYDGFEFQKR ISKFIPADEG NQDILNIIFT NKLTCTFDES DFRYHARALI GTNPTIISTT GIIEAPAKPK EYYLELMTNF TKENTEKIKE KYKGEFLEYN DPRLSEVAES YLLQAIMYYE TGDAFCEDKE CRLYNAHWQK ELLYAQTNKK FCKKHEESFE KIINQS // ID A9A5G0_NITMS Unreviewed; 154 AA. AC A9A5G0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12671.1}; GN OrderedLocusNames=Nmar_0775 {ECO:0000313|EMBL:ABX12671.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12671.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12671.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12671.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12671.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0775; -. DR EnsemblBacteria; ABX12671; ABX12671; Nmar_0775. DR KEGG; nmr:Nmar_0775; -. DR eggNOG; arCOG08712; Archaea. DR eggNOG; ENOG41110FK; LUCA. DR HOGENOM; HOG000107433; -. DR OMA; FIGVFMY; -. DR BioCyc; NMAR436308:GI3J-801-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 154 AA; 18008 MW; DE132DD26DCB11B0 CRC64; MARSRYWKIT SEEMEGFNYK EENLLNWEIK CVREPEDEAH FIGVFMYRNG TAYDYESVKG ICYFHNNIDR KELPEITSFL QGKFGGKEME KGERIFLKDS QEIYSSKDIA NLAKEMESKF NTKAIISLEF DNITIEQLKE DGLPEAKLLP IPGK // ID A9A1M6_NITMS Unreviewed; 166 AA. AC A9A1M6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 55. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX13541.1}; GN OrderedLocusNames=Nmar_1645 {ECO:0000313|EMBL:ABX13541.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13541.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13541.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13541.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH arsR-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000711}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13541.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1645; -. DR EnsemblBacteria; ABX13541; ABX13541; Nmar_1645. DR KEGG; nmr:Nmar_1645; -. DR eggNOG; arCOG02611; Archaea. DR eggNOG; COG3398; LUCA. DR HOGENOM; HOG000109984; -. DR OMA; RSTVSWH; -. DR BioCyc; NMAR436308:GI3J-1690-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 2. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000711}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000711}; KW Transcription regulation {ECO:0000256|RuleBase:RU000711}. FT DOMAIN 69 145 HTH arsR-type DNA-binding. FT {ECO:0000259|SMART:SM00418}. SQ SEQUENCE 166 AA; 19091 MW; A835954DF4AC1364 CRC64; MTDRDSQIQE IIEKNPGIQF REIMRSSGLK NGVLSHYLDK LERNGVIKAD RGPRQARFYP PQITEDESIV IKALRKQTPR DLLLALVKED GLEFPQLVKE VNKSPSTVSL YLSQLVDDGL VETKVVQLKK RYHIKVRDLI DKLVEDYRPS LLEKPTSGFE DIINSF // ID A9A2B8_NITMS Unreviewed; 104 AA. AC A9A2B8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Alba, DNA/RNA-binding protein {ECO:0000313|EMBL:ABX12829.1}; GN OrderedLocusNames=Nmar_0933 {ECO:0000313|EMBL:ABX12829.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12829.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12829.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12829.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12829.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2B8; -. DR STRING; 436308.Nmar_0933; -. DR EnsemblBacteria; ABX12829; ABX12829; Nmar_0933. DR KEGG; nmr:Nmar_0933; -. DR eggNOG; arCOG01753; Archaea. DR eggNOG; COG1581; LUCA. DR HOGENOM; HOG000105803; -. DR KO; K03622; -. DR OMA; GHEQTEK; -. DR BioCyc; NMAR436308:GI3J-961-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.30.110.20; -; 1. DR InterPro; IPR002775; DNA/RNA-bd_Alba-like. DR Pfam; PF01918; Alba; 1. DR SUPFAM; SSF82704; SSF82704; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 104 AA; 11270 MW; E2BA274B6FC32E46 CRC64; MLNDETYEPQ GHEQTEKSDE SIVYIGNDPV MQSALEVLSI LGNKKKITIK SKGNSIPNAV AVANIITEKM LNGNSKVEKI NLDTDAAAGI GRMTSTIEII LLKI // ID A9A3R2_NITMS Unreviewed; 173 AA. AC A9A3R2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=THUMP domain protein {ECO:0000313|EMBL:ABX13324.1}; GN OrderedLocusNames=Nmar_1428 {ECO:0000313|EMBL:ABX13324.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13324.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13324.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13324.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13324.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3R2; -. DR STRING; 436308.Nmar_1428; -. DR EnsemblBacteria; ABX13324; ABX13324; Nmar_1428. DR KEGG; nmr:Nmar_1428; -. DR eggNOG; arCOG00084; Archaea. DR eggNOG; COG1818; LUCA. DR HOGENOM; HOG000108837; -. DR KO; K06963; -. DR OMA; VVATGWR; -. DR BioCyc; NMAR436308:GI3J-1463-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR InterPro; IPR004114; THUMP_dom. DR Pfam; PF02926; THUMP; 1. DR SMART; SM00981; THUMP; 1. DR PROSITE; PS51165; THUMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 55 157 THUMP. {ECO:0000259|PROSITE:PS51165}. SQ SEQUENCE 173 AA; 19688 MW; 8A66A25A93AD27CA CRC64; MNLIVTCARH LEPETEEELR GFLDEFGDSD PKVTITSMSG ILTAETKLDP VEVVRKIKET LLDEPWSVRY CLRIIPIQRV VETKIEEIEK VVEEFSDGIS KDEKYRISIE KRNSDMSSQD IITKIASKIK SQVSLEFPDK VVLIEILGNK TGISVLKKSD ILSTEKTKRS MSE // ID A9A4X1_NITMS Unreviewed; 341 AA. AC A9A4X1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE RecName: Full=S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase {ECO:0000256|HAMAP-Rule:MF_01921}; DE EC=4.1.3.44 {ECO:0000256|HAMAP-Rule:MF_01921}; DE AltName: Full=tRNA wyosine derivatives biosynthesis protein Taw1 {ECO:0000256|HAMAP-Rule:MF_01921}; GN Name=taw1 {ECO:0000256|HAMAP-Rule:MF_01921}; GN OrderedLocusNames=Nmar_1529 {ECO:0000313|EMBL:ABX13425.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13425.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13425.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13425.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Component of the wyosine derivatives biosynthesis CC pathway that catalyzes the condensation of N-methylguanine with 2 CC carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine CC (imG-14) on guanosine-37 of tRNA(Phe). {ECO:0000256|HAMAP- CC Rule:MF_01921}. CC -!- CATALYTIC ACTIVITY: N(1)-methylguanine(37) in tRNA(Phe) + pyruvate CC + S-adenosyl-L-methionine = 4-demethylwyosine(37) in tRNA(Phe) + CC L-methionine + 5'-deoxyadenosine + CO(2) + H(2)O. CC {ECO:0000256|HAMAP-Rule:MF_01921}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01921}; CC Note=Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster CC coordinated with 3 cysteines and an exchangeable S-adenosyl-L- CC methionine. {ECO:0000256|HAMAP-Rule:MF_01921}; CC -!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_01921}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01921}. CC -!- SIMILARITY: Belongs to the TYW1 family. {ECO:0000256|HAMAP- CC Rule:MF_01921}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13425.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X1; -. DR STRING; 436308.Nmar_1529; -. DR EnsemblBacteria; ABX13425; ABX13425; Nmar_1529. DR KEGG; nmr:Nmar_1529; -. DR eggNOG; arCOG04174; Archaea. DR eggNOG; COG0731; LUCA. DR HOGENOM; HOG000224906; -. DR KO; K15449; -. DR OMA; KLCGWVR; -. DR BioCyc; NMAR436308:GI3J-1571-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016833; F:oxo-acid-lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01921; TYW1_archaea; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR007197; rSAM. DR InterPro; IPR013917; tRNA_wybutosine-synth. DR InterPro; IPR023993; TYW1_archaea. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF08608; Wyosine_form; 1. DR TIGRFAMs; TIGR03972; rSAM_TYW1; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_01921}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01921}; KW Iron {ECO:0000256|HAMAP-Rule:MF_01921}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_01921}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_01921}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01921}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_01921}; KW tRNA processing {ECO:0000256|HAMAP-Rule:MF_01921}. FT DOMAIN 76 250 Radical_SAM. {ECO:0000259|Pfam:PF04055}. FT DOMAIN 264 324 Wyosine_form. {ECO:0000259|Pfam:PF08608}. FT METAL 40 40 Iron-sulfur 1 (4Fe-4S). FT {ECO:0000256|HAMAP-Rule:MF_01921}. FT METAL 53 53 Iron-sulfur 1 (4Fe-4S). FT {ECO:0000256|HAMAP-Rule:MF_01921}. FT METAL 66 66 Iron-sulfur 1 (4Fe-4S). FT {ECO:0000256|HAMAP-Rule:MF_01921}. FT METAL 76 76 Iron-sulfur 2 (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_01921}. FT METAL 80 80 Iron-sulfur 2 (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_01921}. FT METAL 83 83 Iron-sulfur 2 (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_01921}. SQ SEQUENCE 341 AA; 39962 MW; 6876F1CC418A628B CRC64; MSCSGEVVEE EQLIQIKPAI SEQLKKAKYG VSDHSTVELC HWTKKSFKHE GSCYKHKFYG ISTHRCMEFS PAGMHCENRC VYCWRPMEFY DSLEMKPEQV AEPEEILTKL MAERKKLING YYGDSRNDKQ RLDESLLPSH YAISLSGEPT MYPKLPELIK YLNSLEATKS IFLVTNGQEP DMIQKLQDED ALPTQLYLST NAADYESFLK INKPKYDDSW ERWNRTLGML KHLNTRTVLR ITLIRNYNDQ KSMIPAFAKM FKEASPHFIE IKSYMHIGRS TNRLEHSNML EMEEVKRFSE QIAKQSQIFS VMDESFVSRI SILQNNERFI DRWIPAYVNT N // ID A9A5N9_NITMS Unreviewed; 265 AA. AC A9A5N9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX13044.1}; GN OrderedLocusNames=Nmar_1148 {ECO:0000313|EMBL:ABX13044.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13044.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13044.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13044.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13044.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N9; -. DR STRING; 436308.Nmar_1148; -. DR EnsemblBacteria; ABX13044; ABX13044; Nmar_1148. DR KEGG; nmr:Nmar_1148; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000106554; -. DR OMA; ANCSLQQ; -. DR BioCyc; NMAR436308:GI3J-1180-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 45 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 55 264 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 265 AA; 29518 MW; 1FBFF9955AC697A9 CRC64; MEDFEFIEDQ KPDKEISVSK STFNRLIVAI VAVSIVSAFL GGYVIGGETA EPKEVVIRES VPNLQPSTAS QQQFGPQIIR NISFDDDPMK GNPNASITIV EFSDFQCPFC AKFHETTLPL IEQNYIQTGK VNFVYRDFPI QNIHPNAVPA ALASECADDQ GKFWEMHDMI FEDQQIWKDL PVAQSVTLYK QYASELGLDS IEFDSCLDSG KYIEEVQNDL NDGRTYGVSG TPGFFVGNAD IGFTPISGAQ PYSTFQRVID GQLNR // ID A9A414_NITMS Unreviewed; 86 AA. AC A9A414; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12198.1}; GN OrderedLocusNames=Nmar_0302 {ECO:0000313|EMBL:ABX12198.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12198.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12198.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12198.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12198.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12198; ABX12198; Nmar_0302. DR KEGG; nmr:Nmar_0302; -. DR eggNOG; arCOG08822; Archaea. DR eggNOG; ENOG41110FG; LUCA. DR BioCyc; NMAR436308:GI3J-315-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 86 AA; 9320 MW; F0C851A9507821AA CRC64; MGKIRIRTGR GTGTIEVDND PKKWSGDEFK KIQEARKKAA GNTRVSSGRG TGTRKLSDMP DPKARPDTKG MTRSTGRGTG SRKSRG // ID A9A4G7_NITMS Unreviewed; 188 AA. AC A9A4G7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12656.1}; GN OrderedLocusNames=Nmar_0760 {ECO:0000313|EMBL:ABX12656.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12656.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12656.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12656.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12656.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0760; -. DR EnsemblBacteria; ABX12656; ABX12656; Nmar_0760. DR KEGG; nmr:Nmar_0760; -. DR eggNOG; ENOG4102U9Y; Archaea. DR eggNOG; ENOG4110ZJV; LUCA. DR BioCyc; NMAR436308:GI3J-786-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 188 AA; 22116 MW; 3688AF8128518A46 CRC64; MDKNSEIIRI EIIRILNENG RIRGTELAKR VMEKVGNEKT VYREISALVE SGDIEKRVHS RAHIEYELVN LYESVNNQLK NLHSEIKTIF EEIENFDNIS KAENLSFHER LRSIIHLIQI VQSTDGIMKL LSFYPTFRKD KMFPQINRKI DDCWQAIMTN ISHQPEDVFL NEILANLRIS HRDAKNVN // ID A9A4U2_NITMS Unreviewed; 216 AA. AC A9A4U2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13396.1}; GN OrderedLocusNames=Nmar_1500 {ECO:0000313|EMBL:ABX13396.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13396.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13396.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13396.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13396.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1500; -. DR EnsemblBacteria; ABX13396; ABX13396; Nmar_1500. DR KEGG; nmr:Nmar_1500; -. DR eggNOG; arCOG08676; Archaea. DR eggNOG; ENOG411114F; LUCA. DR HOGENOM; HOG000106193; -. DR KO; K10944; -. DR OMA; AGDYIFY; -. DR BioCyc; NMAR436308:GI3J-1542-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.20.1450.10; -; 1. DR InterPro; IPR024656; AmoA_arc. DR InterPro; IPR003393; NH3_CH4_mOase_A. DR Pfam; PF12942; Archaeal_AmoA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 59 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 90 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 96 116 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 123 147 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 180 199 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 216 AA; 24291 MW; 5BCC502ED558683E CRC64; MVWLRRCTHY LFIVVVAVNS TLLTINAGDY IFYTDWAWTS YTVFSISQTL MLIVGATYYL TFTGVPGTAT YYALIMTVYT WIAKAAWFSL GYPYDFIVTP VWLPSAMLLD LVYWATKKNK HSLILFGGVL VGMSLPLFNM VNLITVADPL ETAFKYPRPT LPPYMTPIEP QVGKFYNSPV ALGAGAGAVL GCTFAALGCK LNTWTYRWMA AWSKWD // ID A9A1J8_NITMS Unreviewed; 154 AA. AC A9A1J8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 57. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX13177.1}; GN OrderedLocusNames=Nmar_1281 {ECO:0000313|EMBL:ABX13177.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13177.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13177.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13177.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13177.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1281; -. DR EnsemblBacteria; ABX13177; ABX13177; Nmar_1281. DR KEGG; nmr:Nmar_1281; -. DR eggNOG; arCOG02611; Archaea. DR eggNOG; COG3398; LUCA. DR HOGENOM; HOG000109984; -. DR BioCyc; NMAR436308:GI3J-1314-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 2. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 71 145 HTH arsR-type DNA-binding. FT {ECO:0000259|SMART:SM00418}. SQ SEQUENCE 154 AA; 17817 MW; 93421BE4E115BFAF CRC64; MSDRESMLTE IIHKNPGLHY SEIIRVSGLK NGVLSYYLTK LESNGTIKIE REKNKTRFFT PTITHEEIRI IVFLRKETSR RILSVLSDSD GLKFKRIVEK VGKSAPTISQ NLSKLIASDL VVLKLENSEK KYYLKRNSTL KKLIKKCQIN NSYK // ID A9A5H0_NITMS Unreviewed; 167 AA. AC A9A5H0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 52. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX12681.1}; GN OrderedLocusNames=Nmar_0785 {ECO:0000313|EMBL:ABX12681.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12681.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12681.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12681.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12681.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5H0; -. DR STRING; 436308.Nmar_0785; -. DR EnsemblBacteria; ABX12681; ABX12681; Nmar_0785. DR KEGG; nmr:Nmar_0785; -. DR eggNOG; arCOG01687; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000107378; -. DR OMA; CEYCETQ; -. DR BioCyc; NMAR436308:GI3J-811-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF12840; HTH_20; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 81 WHTH_DNA-bd_dom. FT {ECO:0000259|Pfam:PF12840}. SQ SEQUENCE 167 AA; 18922 MW; FB9A9039AB868986 CRC64; MSTLLEKQIK VNRIVTTSVE HARAIEDPAR AKIVEILYRQ ALSAEQITTA LKKSGFKKAL TTIRHHLEIL KESGLIEIVK IEESRGAITK FYSTSTKLLD FETPEDFESK YSKIIDNTST KIEKILKGLT PKTGKTKGKK SEEYSQYLVM EIMNRAMTNV LENSGKK // ID A9A4L4_NITMS Unreviewed; 375 AA. AC A9A4L4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12992.1}; GN OrderedLocusNames=Nmar_1096 {ECO:0000313|EMBL:ABX12992.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12992.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12992.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12992.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12992.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1096; -. DR EnsemblBacteria; ABX12992; ABX12992; Nmar_1096. DR KEGG; nmr:Nmar_1096; -. DR eggNOG; arCOG09395; Archaea. DR eggNOG; ENOG410XNWK; LUCA. DR HOGENOM; HOG000223845; -. DR OMA; SDLVMYD; -. DR BioCyc; NMAR436308:GI3J-1127-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR021516; DUF3179. DR Pfam; PF11376; DUF3179; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 375 AA; 41873 MW; D4A928164D6A6284 CRC64; MNAKILAPAV AIGIALVGLG LFLSEDSRPY TTITPTSSSV VVPETGISEF QMMETDGIKH LIPLDKIKGG GPPKDGIPSI DNPIFADISD SQFMSDSDTV IGLEINGQAK AYPLFILVWH EIVNDKVGGL PVSVTYCPLC YTNQVFERVI DGQEVEFGTS GKLYNSNLLM YDRLTESYWS QALGIAVKGE LSGYQLDLVP FDVITWGDWK KLHPDTLVLT TDTGHLRSYA TDPYGNYYAE PRIMFPVEYR DDRMHPKEII VGFNLDGIYK AYKQNDIESQ IVINDSVGST SILLVSLFSE NSRAFDRVVD GEILDFEYFD GKIIDSQTNS EWSYDGLAKS GYYEGKQLER LPIEPGFWFE WVAFHPKTLV YGDVS // ID A9A4L1_NITMS Unreviewed; 425 AA. AC A9A4L1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ABX12989.1}; GN OrderedLocusNames=Nmar_1093 {ECO:0000313|EMBL:ABX12989.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12989.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12989.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12989.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12989.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4L1; -. DR STRING; 436308.Nmar_1093; -. DR EnsemblBacteria; ABX12989; ABX12989; Nmar_1093. DR KEGG; nmr:Nmar_1093; -. DR eggNOG; arCOG04335; Archaea. DR eggNOG; COG1301; LUCA. DR HOGENOM; HOG000208778; -. DR OMA; QFFDMGR; -. DR BioCyc; NMAR436308:GI3J-1124-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0017153; F:sodium:dicarboxylate symporter activity; IEA:InterPro. DR Gene3D; 1.10.3860.10; -; 1. DR InterPro; IPR001991; Na-dicarboxylate_symporter. DR PANTHER; PTHR11958; PTHR11958; 1. DR Pfam; PF00375; SDF; 1. DR PRINTS; PR00173; EDTRNSPORT. DR SUPFAM; SSF118215; SSF118215; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 76 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 115 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 166 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 205 228 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 240 264 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 330 359 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 371 394 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 425 AA; 45456 MW; AE2047C958D8177D CRC64; MELKNYIFKQ LWLQVVISLL VGLGVGLVLG DDVGVSLDDN TLDTVSSYLK IPANIFLSVI LMIIVPLIFA SIVVAITNLG TKEKMKTLGL GIGVYFVITT TIAILIAITL ASVIAPGSIL DLTALQETHD LSEDDLKVTE GFSVDEIPDI ASNIIPRNPI VSYLEGQMLS ILIMAMIVGL AMAALPKESV KPLLDLLESV QKITLYILIM AMKIVPFAVF GLIVGMVAKV GVETMAGLGV YMATVILGLG AMLLVYTMII KFVAKRPISS TFSKFRNPQT LAFSTASSMA TMPMTLKTAE EDLKIDTRVS KFVIPLGTTV NMDGTALYQV IAVFFLAQLF AIELSIFSIL VIIITSLLAS IGTPAVPGAG TVVLATILVT VGIPPVGILL LLSVDRILDM IRTMVNVTGD LTASCAFNEI TREKN // ID A9A457_NITMS Unreviewed; 279 AA. AC A9A457; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12241.1}; GN OrderedLocusNames=Nmar_0345 {ECO:0000313|EMBL:ABX12241.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12241.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12241.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12241.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12241.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0345; -. DR EnsemblBacteria; ABX12241; ABX12241; Nmar_0345. DR KEGG; nmr:Nmar_0345; -. DR eggNOG; arCOG08643; Archaea. DR eggNOG; arCOG08716; Archaea. DR eggNOG; ENOG4110ZJN; LUCA. DR HOGENOM; HOG000106337; -. DR OMA; TEETWRT; -. DR BioCyc; NMAR436308:GI3J-360-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR027560; PEFG-CTERM. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 249 269 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 279 AA; 29205 MW; 146589480B3279B5 CRC64; MKSQLMVFAL SAILVASIGM APAFGQIQST IIVTTDKTSY SEGETIMVTG EVRDLYAGTP VSLIVTSPNG SIVAIDQITV GADKKFSAEI TAGGTMKVEG TYTVIVTYGS ENRSAETTFE FGGSTAPPVE NVVNPDVTDT TAAVQGSSDL VGYEITGGKL LGIMPDVDAN SLIVSIDGTE DGSITLTIPR SVLDATFPDG ADDDFFVLID GEEVEFDETK STTDRTLTIS FPAGTEQIEI IGTFVVPEFG TIAAMILAVA IISIIAVSAK SRLSIMPRY // ID A9A5K1_NITMS Unreviewed; 216 AA. AC A9A5K1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=SNF7 {ECO:0000313|EMBL:ABX12712.1}; GN OrderedLocusNames=Nmar_0816 {ECO:0000313|EMBL:ABX12712.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12712.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12712.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12712.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12712.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0816; -. DR EnsemblBacteria; ABX12712; ABX12712; Nmar_0816. DR KEGG; nmr:Nmar_0816; -. DR eggNOG; arCOG00452; Archaea. DR eggNOG; COG5491; LUCA. DR HOGENOM; HOG000107690; -. DR OMA; HDASHAR; -. DR BioCyc; NMAR436308:GI3J-843-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0007034; P:vacuolar transport; IEA:InterPro. DR InterPro; IPR005024; Snf7_fam. DR Pfam; PF03357; Snf7; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 216 AA; 23376 MW; 6D476BB208987E5A CRC64; MLSNSWNNTG GESISQKVMG KVKPDEPLKN KIDFAQKKLQ FQITKLEGIN EKLRVKHDQI FEKIVSAHKS NKNAYAQAYA NELAQVRKMK NMVSGAKLSM EQVKLRLDTV SELGDVVVTL SPCMSIIKGL APSLNGIMPE ANASMQDLSS VLGDVMSGSS VDLGDSMSVG PETNADTLAI LEEAQGVIAG QTKASIPDVP DSLKQQIVEK KTDIFI // ID A9A1E2_NITMS Unreviewed; 214 AA. AC A9A1E2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX12777.1}; GN OrderedLocusNames=Nmar_0881 {ECO:0000313|EMBL:ABX12777.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12777.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12777.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12777.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12777.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1E2; -. DR STRING; 436308.Nmar_0881; -. DR EnsemblBacteria; ABX12777; ABX12777; Nmar_0881. DR KEGG; nmr:Nmar_0881; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000105582; -. DR OMA; ITILEWG; -. DR BioCyc; NMAR436308:GI3J-909-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 24 214 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 214 AA; 24323 MW; DEACB3B7012A19D6 CRC64; MTKYYLLVIP IAIGIIAGGF LAFYPEPEKN PTKLTPSTLI ENGSPILGNS NAPITILEWG DYQCTFCYKF HKDTLNVINE DFIKTGKVKL VFKDFPLNGP DSVLAGEASF CARDQGKYWE YHDELYKNWG GERTGWVTRE SLDIFASTVG LDLQTFNECL DEHKYQNKVN ALYEFGREIG IDATPSFLVF NDEKIIKIRG NQPLEVFLKT IDEL // ID A9A4B4_NITMS Unreviewed; 216 AA. AC A9A4B4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX12603.1}; GN OrderedLocusNames=Nmar_0707 {ECO:0000313|EMBL:ABX12603.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12603.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12603.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12603.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12603.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4B4; -. DR STRING; 436308.Nmar_0707; -. DR EnsemblBacteria; ABX12603; ABX12603; Nmar_0707. DR KEGG; nmr:Nmar_0707; -. DR eggNOG; ENOG4102TV8; Archaea. DR eggNOG; COG0784; LUCA. DR BioCyc; NMAR436308:GI3J-732-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 119 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 216 AA; 25012 MW; A89988A2ECB3D9D2 CRC64; MSIRALVIDD EKETLDLFSE LLTTHNIQVV GKGHNGQEAL FLFQKLKPDV VYLDVSMPVY DGLYALEKIR EINPNAIVFL IVEKMSLKSE MKMNRLNPSF VFREPLDVDE IIQNTHRFCL PPKDELENMQ KTMITLALKN TLLELGHDEL DKVMSILKKD YNLTLDDCYD NPEDLKHVLQ DLFGESYDDI LQSLRSNMKE ISSHHSTKTF ISNLHE // ID A9A631_NITMS Unreviewed; 396 AA. AC A9A631; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 42. DE SubName: Full=Amidohydrolase {ECO:0000313|EMBL:ABX13509.1}; GN OrderedLocusNames=Nmar_1613 {ECO:0000313|EMBL:ABX13509.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13509.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13509.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13509.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13509.1; -; Genomic_DNA. DR ProteinModelPortal; A9A631; -. DR STRING; 436308.Nmar_1613; -. DR EnsemblBacteria; ABX13509; ABX13509; Nmar_1613. DR KEGG; nmr:Nmar_1613; -. DR eggNOG; arCOG00692; Archaea. DR eggNOG; COG0402; LUCA. DR HOGENOM; HOG000225952; -. DR OMA; CPRSNLV; -. DR BioCyc; NMAR436308:GI3J-1657-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016810; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; IEA:InterPro. DR Gene3D; 2.30.40.10; -; 1. DR InterPro; IPR006680; Amidohydro-rel. DR InterPro; IPR011059; Metal-dep_hydrolase_composite. DR InterPro; IPR032466; Metal_Hydrolase. DR Pfam; PF01979; Amidohydro_1; 1. DR SUPFAM; SSF51338; SSF51338; 2. DR SUPFAM; SSF51556; SSF51556; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13509.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 52 392 Amidohydro-rel. FT {ECO:0000259|Pfam:PF01979}. SQ SEQUENCE 396 AA; 43849 MW; A82D8AACBB1A3C11 CRC64; MLIKNISLLL GKELEFVSKT NVQIQDGRFK RIQPNIKPSG KEDSIDCEDL LLIPGFINAH THIGDSIGKD VTLESSVDKK IHPVFGAKSK ILKNTPPENL SNFMKNTCHS MIRKGITTFV DFREGGLDGV ILLKKTLSEI PIRSIILGRV NFYQNSTEIK KNLPIPKEKA KELPLILQKC DGIGVSGANE NSTSTLNHYS KTSKIRAIHS AETKQSVSRS KKMTRKSEVI RALSMKPHFL IHMTHASNSD LHLAAKKTRG IVVCPRANSS LAEGIPDITL MQKAGCTLGL GTDNVMINSP DMFREMDYLW KVTMGIHKKR INPKEILKMA TVNGGKILKK DIGVIETKKI ADCIFLNKHA LDLEPMHEPY ASIVHRASES AIQAVMIGGK IVHGKI // ID A9A290_NITMS Unreviewed; 215 AA. AC A9A290; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12801.1}; GN OrderedLocusNames=Nmar_0905 {ECO:0000313|EMBL:ABX12801.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12801.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12801.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12801.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12801.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12801; ABX12801; Nmar_0905. DR KEGG; nmr:Nmar_0905; -. DR BioCyc; NMAR436308:GI3J-933-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 215 AA; 23828 MW; 02E40E9432B075F3 CRC64; MKIGYSALFL IAIVLSMAIT IQIGSIESVD AAKAQGVKSS KYGMETKHKV CGDRLCTPED FTSDGERKSL PELRGSSISS QMAMAKMERL FELHRTQLVS AWDSLNDSEK SHMMKMFDKM YEKMQSMSFV DHMQHMSHMM NDKQHDMKDK HGMSGSCKDS SHGKDGAHGE HSCSCKCGKH SEHDRDDKHG MGGSCKDSSH GSSCGGKEHN CSCHK // ID A9A5G2_NITMS Unreviewed; 86 AA. AC A9A5G2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 41. DE RecName: Full=Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; DE Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926}; DE EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926}; DE AltName: Full=Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; DE AltName: Full=Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; GN Name=purS {ECO:0000256|HAMAP-Rule:MF_01926}; GN OrderedLocusNames=Nmar_0777 {ECO:0000313|EMBL:ABX12673.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12673.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12673.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12673.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of the phosphoribosylformylglycinamidine synthase CC complex involved in the purines biosynthetic pathway. Catalyzes CC the ATP-dependent conversion of formylglycinamide ribonucleotide CC (FGAR) and glutamine to yield formylglycinamidine ribonucleotide CC (FGAM) and glutamate. The FGAM synthase complex is composed of CC three subunits. PurQ produces an ammonia molecule by converting CC glutamine to glutamate. PurL transfers the ammonia molecule to CC FGAR to form FGAM in an ATP-dependent manner. PurS interacts with CC PurQ and PurL and is thought to assist in the transfer of the CC ammonia molecule from PurQ to PurL. {ECO:0000256|HAMAP- CC Rule:MF_01926}. CC -!- CATALYTIC ACTIVITY: ATP + N(2)-formyl-N(1)-(5-phospho-D- CC ribosyl)glycinamide + L-glutamine + H(2)O = ADP + phosphate + 2- CC (formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_01926}. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5- CC phospho-D-ribosyl)glycinamide: step 1/2. {ECO:0000256|HAMAP- CC Rule:MF_01926}. CC -!- SUBUNIT: Part of the FGAM synthase complex composed of 1 PurL, 1 CC PurQ and 2 PurS subunits. {ECO:0000256|HAMAP-Rule:MF_01926}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01926}. CC -!- SIMILARITY: Belongs to the PurS family. {ECO:0000256|HAMAP- CC Rule:MF_01926}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12673.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5G2; -. DR STRING; 436308.Nmar_0777; -. DR EnsemblBacteria; ABX12673; ABX12673; Nmar_0777. DR KEGG; nmr:Nmar_0777; -. DR eggNOG; arCOG04462; Archaea. DR eggNOG; COG1828; LUCA. DR HOGENOM; HOG000033801; -. DR KO; K01952; -. DR OMA; YLVHVAI; -. DR BioCyc; NMAR436308:GI3J-803-MONOMER; -. DR UniPathway; UPA00074; UER00128. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004642; F:phosphoribosylformylglycinamidine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1280.10; -; 1. DR HAMAP; MF_01926; PurS; 1. DR InterPro; IPR003850; PurS. DR Pfam; PF02700; PurS; 1. DR ProDom; PD010362; FGAM_PurS; 1. DR TIGRFAMs; TIGR00302; TIGR00302; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01926}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01926}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_01926}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01926}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01926}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 86 AA; 9651 MW; D2F81624F3AFC475 CRC64; MATYNVHVTI ENKPGISDPE GDTILNDLVL KGTHKTVSKI KTAKMLKFTI KEKDKKTAQS KVQEICDDLR IYNPMVSKVT IDVFDA // ID A9A2N1_NITMS Unreviewed; 102 AA. AC A9A2N1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13270.1}; GN OrderedLocusNames=Nmar_1374 {ECO:0000313|EMBL:ABX13270.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13270.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13270.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13270.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13270.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1374; -. DR EnsemblBacteria; ABX13270; ABX13270; Nmar_1374. DR KEGG; nmr:Nmar_1374; -. DR BioCyc; NMAR436308:GI3J-1408-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 102 AA; 12365 MW; 0C8C05A28A674587 CRC64; MVYRQYHEEC NEDCTRLVAY VRIDGKWTRI GHYGSECKQF EPLDLQKEEQ EQLQKEKHNS IKSQLRKIKA ESRDRRKTIE NELNMTNSFF KEQTKSYQSD SK // ID A9A163_NITMS Unreviewed; 201 AA. AC A9A163; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12349.1}; GN OrderedLocusNames=Nmar_0453 {ECO:0000313|EMBL:ABX12349.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12349.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12349.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12349.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12349.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0453; -. DR EnsemblBacteria; ABX12349; ABX12349; Nmar_0453. DR KEGG; nmr:Nmar_0453; -. DR eggNOG; ENOG4102TMV; Archaea. DR eggNOG; ENOG410XZKQ; LUCA. DR BioCyc; NMAR436308:GI3J-472-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 201 AA; 23725 MW; AF4D5832DE3F8ABC CRC64; MPGVDRFLSE SFEIAIKKNL KAEAEYQMKK TMFEKFGISI RQSIEDIEKL HQVRKELLGE SDYSQLKKYL SKICIFRKSD DGKYYIITIL DDFLKRKLMD TIGDDESRKV LTAMTDKNRT TSDVLRLRKI STTSGYRKVN ALIRDGFLIQ TKRKMVENRR PVDQYTTFYH KILFEVKKDD LSLEIFVTKK LFESSSLFDI L // ID A9A5Q3_NITMS Unreviewed; 127 AA. AC A9A5Q3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13058.1}; GN OrderedLocusNames=Nmar_1162 {ECO:0000313|EMBL:ABX13058.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13058.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13058.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13058.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13058.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13058; ABX13058; Nmar_1162. DR KEGG; nmr:Nmar_1162; -. DR BioCyc; NMAR436308:GI3J-1194-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 127 AA; 14646 MW; 1F43C9619E982D9E CRC64; MKLTWNGPIT YSVGGKFTYP KYSGVYIIAK TIDGIKKAKY VGQVNIYERM KVHESNDESN SCVKKVMSNR DDIKVYYTEI KNETDRDNAE FTLYNFYGGS DKLCNENTPF GEYDYDISGP FLQEIEP // ID A9A4G2_NITMS Unreviewed; 205 AA. AC A9A4G2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=O-methyltransferase family 3 {ECO:0000313|EMBL:ABX12651.1}; GN OrderedLocusNames=Nmar_0755 {ECO:0000313|EMBL:ABX12651.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12651.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12651.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12651.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12651.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4G2; -. DR STRING; 436308.Nmar_0755; -. DR EnsemblBacteria; ABX12651; ABX12651; Nmar_0755. DR KEGG; nmr:Nmar_0755; -. DR eggNOG; arCOG00979; Archaea. DR eggNOG; COG4122; LUCA. DR HOGENOM; HOG000106373; -. DR OMA; YSGIWLA; -. DR BioCyc; NMAR436308:GI3J-781-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008171; F:O-methyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002935; O-MeTrfase_3. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01596; Methyltransf_3; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS51682; SAM_OMT_I; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12651.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12651.1}. SQ SEQUENCE 205 AA; 23382 MW; CE655AEDB0204F16 CRC64; MNKAIFEVLE KLEKQSSLEK SRQVNVSSDE RMLAITKETG ELLNMLIRLK NAKNMLEVGM SVGYSTIWCA EAIIENNGKI ITIEQNAKKI QRAKENFQNA NVSEHIAIQE GLAMQILQEL SLNEDYKVFF DFVLIDADKE NVIEYFDMIL PMVSVGGVIV TDNMLYPEKY RESMKEYSSH IQAIQNVRTI TSPIGNGEEI TIKLR // ID A9A296_NITMS Unreviewed; 449 AA. AC A9A296; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Anthranilate synthase {ECO:0000313|EMBL:ABX12807.1}; DE EC=4.1.3.27 {ECO:0000313|EMBL:ABX12807.1}; GN OrderedLocusNames=Nmar_0911 {ECO:0000313|EMBL:ABX12807.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12807.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12807.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12807.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12807.1; -; Genomic_DNA. DR ProteinModelPortal; A9A296; -. DR STRING; 436308.Nmar_0911; -. DR EnsemblBacteria; ABX12807; ABX12807; Nmar_0911. DR KEGG; nmr:Nmar_0911; -. DR eggNOG; arCOG02014; Archaea. DR eggNOG; COG0147; LUCA. DR HOGENOM; HOG000025142; -. DR KO; K01657; -. DR OMA; KIMEVDE; -. DR BioCyc; NMAR436308:GI3J-939-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004049; F:anthranilate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.60.120.10; -; 1. DR InterPro; IPR005801; ADC_synthase. DR InterPro; IPR019999; Anth_synth_I-like. DR InterPro; IPR006805; Anth_synth_I_N. DR InterPro; IPR015890; Chorismate_C. DR Pfam; PF04715; Anth_synt_I_N; 1. DR Pfam; PF00425; Chorismate_bind; 1. DR PRINTS; PR00095; ANTSNTHASEI. DR SUPFAM; SSF56322; SSF56322; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12807.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 21 150 Anth_synt_I_N. FT {ECO:0000259|Pfam:PF04715}. FT DOMAIN 183 436 Chorismate_bind. FT {ECO:0000259|Pfam:PF00425}. SQ SEQUENCE 449 AA; 50653 MW; B5BB59CC50601934 CRC64; MDTFGKTQAK VIPLDLSENQ FQIYNKISRN YSHSFLFESL TGPEVLAETS VMGFDPKVIL KGYSDKVEII QEGKTKTIQT SDPFSELKKL LGKSDDQSYR YLGGAVGVVN YDAIRMVEDI PDTHNSPQPL MEFGIYDDGL LYDNVHKKLF YFYHDENRFE KLVMSDDEFE EFHSSEVTPN MDKTKFSEIV NKAKEYIHDG DIFQVVLSRK FAFDTSGDNL TLYKTLRKLN PSPYMYHLKQ ENKTIIGASP EMLVRITDDK VETFPIAGTR KITDDEEKNK QLAEELIHDE KELAEHTMLV DLGRNDIGRV CKYGTVHPES LMEIKRFSHV QHIVSHVVGN LAPENDMFDA FQAVFPAGTV SGAPKVRAME IIDELETESR GPYAGAVGYF SYNGCCDFAI AIRSIFIEDG KGFVQSGAGI VSDSIPENEF KETEHKAGAM LQALKEASS // ID A9A3R5_NITMS Unreviewed; 272 AA. AC A9A3R5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=TatD-related deoxyribonuclease {ECO:0000313|EMBL:ABX13327.1}; GN OrderedLocusNames=Nmar_1431 {ECO:0000313|EMBL:ABX13327.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13327.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13327.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13327.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13327.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3R5; -. DR STRING; 436308.Nmar_1431; -. DR EnsemblBacteria; ABX13327; ABX13327; Nmar_1431. DR KEGG; nmr:Nmar_1431; -. DR eggNOG; arCOG00891; Archaea. DR eggNOG; COG0084; LUCA. DR HOGENOM; HOG000105017; -. DR KO; K03424; -. DR OMA; EYIDSHF; -. DR BioCyc; NMAR436308:GI3J-1466-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro. DR InterPro; IPR032466; Metal_Hydrolase. DR InterPro; IPR001130; TatD_family. DR PANTHER; PTHR10060; PTHR10060; 1. DR Pfam; PF01026; TatD_DNase; 1. DR PIRSF; PIRSF005902; DNase_TatD; 1. DR SUPFAM; SSF51556; SSF51556; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 272 AA; 30864 MW; D141D447A66AE0DC CRC64; MSEKISLRNR FIQTILRIDQ EMTWSFDSHI HLSDPQYVPD MDFILQEMNS LKIKACCVSM DVQNSQETLE LAKKSELVLP FIGIHPECAN DELEKVVTMI DENHETITGV GEIGLDPTYT NNDEDTKRQT IVFETLLSCA EKYNKPVSIH SRKSLDDVFQ VMTSYDTKHA LLHWFDGSKK QLAKAMDMGF YVSFGPVMVY ANDKQVLLSK CDESKILVET DGPVRFSRCF EMKSADIGFI PSVIFCASKV LGKSFDETVS LLEKNSNAYL GI // ID A9A2K9_NITMS Unreviewed; 266 AA. AC A9A2K9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 50. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX13248.1}; GN OrderedLocusNames=Nmar_1352 {ECO:0000313|EMBL:ABX13248.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13248.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13248.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13248.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13248.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2K9; -. DR STRING; 436308.Nmar_1352; -. DR EnsemblBacteria; ABX13248; ABX13248; Nmar_1352. DR KEGG; nmr:Nmar_1352; -. DR eggNOG; arCOG04362; Archaea. DR eggNOG; COG4742; LUCA. DR HOGENOM; HOG000023856; -. DR BioCyc; NMAR436308:GI3J-1386-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 63 HTH arsR-type DNA-binding. FT {ECO:0000259|Pfam:PF01022}. SQ SEQUENCE 266 AA; 30785 MW; ED032EB0DE5D2330 CRC64; MEDLIDEAAD YVLELASPQR LNILFKLLSK NLTPSECAKE VDSTRQEVHR NFARLEKNGL VKKTLDGKYT LTTFGKSICT QVPSLVFLLQ NRKYFEGHDF GDLPHKFNMR CGQLAMSTHV KGVSKVIEQW KNIYKNSDEY VYEVIAEVPL DIIEPLVKQV KKGVKFNYVF SESTIVPKGR KALLKKLGFD KLLEAGLVER KMISNIQTSL VLNEKEACVM FPDNEGESDI TEMFYSKDPM FHEWCLDYFR YCWYGSDVFQ ESKLKE // ID A9A299_NITMS Unreviewed; 258 AA. AC A9A299; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Indole-3-glycerol-phosphate synthase {ECO:0000313|EMBL:ABX12810.1}; DE EC=4.1.1.48 {ECO:0000313|EMBL:ABX12810.1}; GN OrderedLocusNames=Nmar_0914 {ECO:0000313|EMBL:ABX12810.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12810.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12810.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12810.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12810.1; -; Genomic_DNA. DR ProteinModelPortal; A9A299; -. DR STRING; 436308.Nmar_0914; -. DR EnsemblBacteria; ABX12810; ABX12810; Nmar_0914. DR KEGG; nmr:Nmar_0914; -. DR eggNOG; arCOG01088; Archaea. DR eggNOG; COG0134; LUCA. DR HOGENOM; HOG000230462; -. DR KO; K01609; -. DR OMA; EPKYFNG; -. DR BioCyc; NMAR436308:GI3J-942-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004425; F:indole-3-glycerol-phosphate synthase activity; IEA:UniProtKB-EC. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR013798; Indole-3-glycerol_P_synth. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF00218; IGPS; 1. DR SUPFAM; SSF51366; SSF51366; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12810.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 25 254 IGPS. {ECO:0000259|Pfam:PF00218}. SQ SEQUENCE 258 AA; 28648 MW; 0C46FDE393B80BC2 CRC64; MAENILRKLV NNSQMAINDG VYEVEGNLEK SNKDFIQIIK TSGHAPLLTE VKFSSPSLGK IRTITDPVSI ASQMIAGGSK ALSVLTQPHL FNGSPEYFMK VRQAVDVPML MKDIMIDKVQ IDAAKNIGAD FMLVIQSLFD QNFLKEIDEF IAYGHKQGLQ ILLEVHTKQE FENALKTEAD LIGINNRNLD TLEIDLKTTE TILSGIDKSR PILSESGIDT PEDIQYLKKC GADAFLIGSS IMKSDNIEEQ VKKLVNAY // ID A9A2J0_NITMS Unreviewed; 128 AA. AC A9A2J0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13229.1}; GN OrderedLocusNames=Nmar_1333 {ECO:0000313|EMBL:ABX13229.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13229.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13229.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13229.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13229.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1333; -. DR EnsemblBacteria; ABX13229; ABX13229; Nmar_1333. DR KEGG; nmr:Nmar_1333; -. DR BioCyc; NMAR436308:GI3J-1367-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 31 76 {ECO:0000256|SAM:Coils}. FT COILED 91 125 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 128 AA; 15139 MW; 0B56520CC1BFAD6E CRC64; MPKKRKVRVN PLGIDKKRLV KNHGSPKITN ISKQRKNKQN QNKKHSNIRE KIKDEKQILL KDSEKLKQNL KKLQTLVISM SGLEKLSKDS IRRIQQKRQK ICKENERLFK KINSSAKRLS ELETKFGR // ID A9A4S3_NITMS Unreviewed; 282 AA. AC A9A4S3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ABX13377.1}; GN OrderedLocusNames=Nmar_1481 {ECO:0000313|EMBL:ABX13377.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13377.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13377.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13377.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13377.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4S3; -. DR STRING; 436308.Nmar_1481; -. DR EnsemblBacteria; ABX13377; ABX13377; Nmar_1481. DR KEGG; nmr:Nmar_1481; -. DR eggNOG; arCOG00600; Archaea. DR eggNOG; COG0517; LUCA. DR HOGENOM; HOG000023843; -. DR OMA; ENINRMS; -. DR BioCyc; NMAR436308:GI3J-1519-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 4. DR SMART; SM00116; CBS; 4. DR PROSITE; PS51371; CBS; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 62 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 73 129 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 136 195 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 228 282 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 282 AA; 31512 MW; F7B46D904D9D8D62 CRC64; MKHASDYKHA PRTMKLESTL ADALKKILDE KKSRILVTEN DKVTGIVTEK DLGIFLLTDD TERNLSDIPL STIVQKIISV DEHTSMIECA EIMLTKSIGS LVITSNDEVV GIITKTDLVR YFTKMHPDEK LVGEYMSPYY AWQYSDTPLY KIVLKMIDEK ISRIIIRNRK DVPVGIITFR DLFALALKQG NFEDVLDNTD PVISVIFPRK GFISESGFGA SVNVEDIMSK DIVSVNYDDD LANTGNLLLE KNINGVGVLS QHGNIVGILS KTDIVKAIAF LK // ID A9A5X6_NITMS Unreviewed; 420 AA. AC A9A5X6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 66. DE RecName: Full=Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; DE Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; DE EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; GN Name=hisD {ECO:0000256|HAMAP-Rule:MF_01024}; GN OrderedLocusNames=Nmar_1558 {ECO:0000313|EMBL:ABX13454.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13454.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13454.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13454.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the sequential NAD-dependent oxidations of L- CC histidinol to L-histidinaldehyde and then to L-histidine. CC {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}. CC -!- CATALYTIC ACTIVITY: L-histidinol + H(2)O + 2 NAD(+) = L-histidine CC + 2 NADH. {ECO:0000256|HAMAP-Rule:MF_01024, CC ECO:0000256|PIRNR:PIRNR000099}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01024, CC ECO:0000256|PIRSR:PIRSR000099-4}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01024, ECO:0000256|PIRSR:PIRSR000099-4}; CC -!- PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L- CC histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 9/9. CC {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}. CC -!- SIMILARITY: Belongs to the histidinol dehydrogenase family. CC {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13454.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X6; -. DR STRING; 436308.Nmar_1558; -. DR EnsemblBacteria; ABX13454; ABX13454; Nmar_1558. DR KEGG; nmr:Nmar_1558; -. DR eggNOG; arCOG04352; Archaea. DR eggNOG; COG0141; LUCA. DR HOGENOM; HOG000243914; -. DR KO; K00013; -. DR OMA; TEIYRVG; -. DR BioCyc; NMAR436308:GI3J-1601-MONOMER; -. DR UniPathway; UPA00031; UER00014. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004399; F:histidinol dehydrogenase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01024; HisD; 1. DR InterPro; IPR016161; Ald_DH/histidinol_DH. DR InterPro; IPR001692; Histidinol_DH_CS. DR InterPro; IPR022695; Histidinol_DH_monofunct. DR InterPro; IPR012131; Hstdl_DH. DR Pfam; PF00815; Histidinol_dh; 1. DR PIRSF; PIRSF000099; Histidinol_dh; 1. DR PRINTS; PR00083; HOLDHDRGNASE. DR SUPFAM; SSF53720; SSF53720; 1. DR TIGRFAMs; TIGR00069; hisD; 1. DR PROSITE; PS00611; HISOL_DEHYDROGENASE; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_01024, KW ECO:0000256|PIRNR:PIRNR000099}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Histidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01024, KW ECO:0000256|PIRNR:PIRNR000099}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01024, KW ECO:0000256|PIRSR:PIRSR000099-4}; KW NAD {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01024, KW ECO:0000256|PIRNR:PIRNR000099, ECO:0000313|EMBL:ABX13454.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRSR:PIRSR000099- KW 4}. FT ACT_SITE 319 319 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-1}. FT ACT_SITE 320 320 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-1}. FT METAL 252 252 Zinc. {ECO:0000256|HAMAP-Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-4}. FT METAL 255 255 Zinc. {ECO:0000256|HAMAP-Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-4}. FT METAL 352 352 Zinc. {ECO:0000256|HAMAP-Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-4}. FT METAL 411 411 Zinc. {ECO:0000256|HAMAP-Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-4}. FT BINDING 230 230 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-3}. FT BINDING 252 252 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-3}. FT BINDING 255 255 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-3}. FT BINDING 320 320 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-3}. FT BINDING 352 352 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-3}. FT BINDING 406 406 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-3}. FT BINDING 411 411 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01024, FT ECO:0000256|PIRSR:PIRSR000099-3}. SQ SEQUENCE 420 AA; 45163 MW; FD8CE2AE6A1F1BEF CRC64; MKIISINNTE QFLKKIGTKD SSKNQKIVKS ILKDVKKNGD VAVKKYEKKF SAKVSSLRVS QRDIASAYFK VSKEDISAIK LAKSRLSKAE SAVRRQFKDI TIKSNGTKLS KSFVPIDSVG CYVPGGAARY PSSAIMSVVP AKIAGVKRIV VVSPPNSSGN IDPLTIVAAD LCGATEIYKT GGVQSIAALT YGTRSIKKVN KIVGPGGAFV TLAKYLVSNI VSIDMMAGPT ELGIVIDSAA DVDVAALDLI SQAEHSSDTF CYALTTSNSI AKKIQSSVNS KLKDIQRVKI VKSSLESNGF IGVCKPSDII DIANDLAPEH LEIISKNPKK WNKIKNPGLI LYGKNSPSSA SDYLLGSNHI LPTNGFGKTR GSLSVLDFVK LLTKIETTKK DLQKISKSMK NLTLAEGLPN HYEAVRGRLK // ID A9A1E4_NITMS Unreviewed; 130 AA. AC A9A1E4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 40. DE SubName: Full=Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:ABX13123.1}; GN OrderedLocusNames=Nmar_1227 {ECO:0000313|EMBL:ABX13123.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13123.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13123.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13123.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13123.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1E4; -. DR STRING; 436308.Nmar_1227; -. DR EnsemblBacteria; ABX13123; ABX13123; Nmar_1227. DR KEGG; nmr:Nmar_1227; -. DR eggNOG; arCOG01138; Archaea. DR eggNOG; COG1310; LUCA. DR HOGENOM; HOG000009901; -. DR OMA; HTHPANT; -. DR BioCyc; NMAR436308:GI3J-1260-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR028090; JAB_dom_prok. DR InterPro; IPR000555; JAMM/MPN+_dom. DR Pfam; PF14464; Prok-JAB; 1. DR SMART; SM00232; JAB_MPN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 122 MPN (JAB/Mov34). FT {ECO:0000259|SMART:SM00232}. SQ SEQUENCE 130 AA; 14910 MW; A52B0584C86E1E23 CRC64; MQKIILSNSD KKILTQHAEN EKPNESCAIL FGKDNTVSEV FLTKNIEESP VNFTISNEQL IEGYKIAEEK KIDVIGIFHS HPNSEAYPSN TDKKFMKSNP VAWVIYSGVN KDFRAYFLES EIKEIPIEER // ID A9A1I5_NITMS Unreviewed; 320 AA. AC A9A1I5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Homocysteine S-methyltransferase {ECO:0000313|EMBL:ABX13164.1}; GN OrderedLocusNames=Nmar_1268 {ECO:0000313|EMBL:ABX13164.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13164.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13164.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13164.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13164.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I5; -. DR STRING; 436308.Nmar_1268; -. DR EnsemblBacteria; ABX13164; ABX13164; Nmar_1268. DR KEGG; nmr:Nmar_1268; -. DR eggNOG; arCOG08715; Archaea. DR eggNOG; COG0646; LUCA. DR HOGENOM; HOG000265279; -. DR KO; K00548; -. DR OMA; AQEDYKM; -. DR BioCyc; NMAR436308:GI3J-1301-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0047150; F:betaine-homocysteine S-methyltransferase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0009086; P:methionine biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.330; -; 1. DR InterPro; IPR017226; Betaine-hCys_S-MeTrfase_BHMT. DR InterPro; IPR003726; HCY_dom. DR Pfam; PF02574; S-methyl_trans; 1. DR PIRSF; PIRSF037505; Betaine_HMT; 1. DR SUPFAM; SSF82282; SSF82282; 1. DR PROSITE; PS50970; HCY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13164.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13164.1}. FT DOMAIN 4 311 Hcy-binding. FT {ECO:0000259|PROSITE:PS50970}. SQ SEQUENCE 320 AA; 35335 MW; 2A24AFF6E3AF9392 CRC64; MTEKEPFLDA LQNRVLLFDG AMGTEIQKFN PKPEDFPNNQ DGFNDGLVVT RPDWIKQIHR HYLDAGADCI ETNSFGSNKI KLDEYGFGDQ TIEFNKKIAQ LASEVCQEYS DRPRYVIGSM GPSGFLPSSN DPDLGQKPLD EIKEAFELQA EGLILGGVDA LLIETSQDIL EVKLVIEACH QAMEKTGKKI PIIANTTLDQ YGKMLLGTNI QAAYTTVSDM GIDVFGMNCS TGPIEMTPSV RWLDEQNEHN ILVVPNAGMP ENEGGQAVYK MTPEKMGDAL GDFLNQYKKV RIIGGCCGTN PEHIKVLRKV IDEKANSVEG // ID A9A3E7_NITMS Unreviewed; 173 AA. AC A9A3E7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12879.1}; GN OrderedLocusNames=Nmar_0983 {ECO:0000313|EMBL:ABX12879.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12879.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12879.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12879.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12879.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0983; -. DR EnsemblBacteria; ABX12879; ABX12879; Nmar_0983. DR KEGG; nmr:Nmar_0983; -. DR eggNOG; arCOG03748; Archaea. DR eggNOG; COG1846; LUCA. DR HOGENOM; HOG000108657; -. DR OMA; DIMMFSM; -. DR BioCyc; NMAR436308:GI3J-1011-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 109 131 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 173 AA; 19594 MW; 24B196C95163AE91 CRC64; MEEEAKDIIV LGAIRRGERK FDKIQRSTQI KPEELNEILE KLEERGFIKV EEKKGWLGKK IELSVTEKGS NELDQRLHEV KEKWSQMQAL YQSGDKKKLQ GFMDDNRSFF PMMMFFGVMD IMMFSMMFSM IGASMGDYVP AESMPDGADG GMDDGGMDGG GMDDGGFDID IGF // ID A9A4C6_NITMS Unreviewed; 349 AA. AC A9A4C6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 51. DE SubName: Full=Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX12615.1}; GN OrderedLocusNames=Nmar_0719 {ECO:0000313|EMBL:ABX12615.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12615.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12615.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12615.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12615.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0719; -. DR EnsemblBacteria; ABX12615; ABX12615; Nmar_0719. DR KEGG; nmr:Nmar_0719; -. DR eggNOG; arCOG00751; Archaea. DR eggNOG; COG0601; LUCA. DR HOGENOM; HOG000170241; -. DR KO; K02033; -. DR OMA; TIECAAP; -. DR BioCyc; NMAR436308:GI3J-745-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0006810; P:transport; IEA:UniProtKB-KW. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU363032}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363032}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032}; KW Transport {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 12 31 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 129 151 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 172 192 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 212 233 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 273 295 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 315 341 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 125 338 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 349 AA; 38740 MW; 632E32B4FDD883A1 CRC64; MKRYVATRAA TMFGVLMITL LITISLVGSN MDTILKQGMV FQVRSEITEN PAIAESFSSV EEFEKFIQSQ IDQRMKVMGL DEPWYSPQRI GLTMYKILLL DFGHATFLTS DAGSSDVKDI IFEKLPRTIL LFTTATIIIS VIGIFLGALS ASKVGSVIDR ITSSFAIISS SFPVWWIGML MIFLFAFTYQ IFPARATPDI PSSDPGYIGS LLYHMALPLI TIVMIGFGSW AYLVRNFMVG IMQEDFIMAK KTIGIKRKKI IYTHALKNAA PPIVTILALS LSGSLGGAII TEAVFDWPGM GRLYFEAITV MDLPVIIGAT YILTVFFLVS IFIADLLYGY FDPRVRTGQ // ID A9A2I9_NITMS Unreviewed; 145 AA. AC A9A2I9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13228.1}; GN OrderedLocusNames=Nmar_1332 {ECO:0000313|EMBL:ABX13228.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13228.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13228.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13228.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13228.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2I9; -. DR STRING; 436308.Nmar_1332; -. DR EnsemblBacteria; ABX13228; ABX13228; Nmar_1332. DR KEGG; nmr:Nmar_1332; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR BioCyc; NMAR436308:GI3J-1366-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 142 Usp. {ECO:0000259|Pfam:PF00582}. SQ SEQUENCE 145 AA; 16370 MW; 178D0669833EF121 CRC64; MTEFKHILVP FDNSEKGLKS ITTASKIAGN LGGKITILQC VEKKIPKFMF FKTKQDKIDA ARDVNIAENE ASKFREIAKK YGANVATKIE KIEDDPHQYI IDYANKSDVD LVVMNPSENI NTTEIHQSVV DKISRNLNCS LLRIQ // ID A9A2R7_NITMS Unreviewed; 521 AA. AC A9A2R7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Ammonium transporter {ECO:0000313|EMBL:ABX13594.1}; GN OrderedLocusNames=Nmar_1698 {ECO:0000313|EMBL:ABX13594.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13594.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13594.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13594.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13594.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2R7; -. DR STRING; 436308.Nmar_1698; -. DR EnsemblBacteria; ABX13594; ABX13594; Nmar_1698. DR KEGG; nmr:Nmar_1698; -. DR eggNOG; arCOG04397; Archaea. DR eggNOG; COG0004; LUCA. DR HOGENOM; HOG000017736; -. DR KO; K03320; -. DR OMA; IVGCLLT; -. DR BioCyc; NMAR436308:GI3J-1743-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008519; F:ammonium transmembrane transporter activity; IEA:InterPro. DR Gene3D; 1.10.3430.10; -; 1. DR InterPro; IPR029020; Ammonium/urea_transptr. DR InterPro; IPR001905; Ammonium_transpt. DR InterPro; IPR018047; Ammonium_transpt_CS. DR InterPro; IPR024041; NH4_transpt_AmtB-like_dom. DR PANTHER; PTHR11730; PTHR11730; 2. DR Pfam; PF00909; Ammonium_transp; 1. DR SUPFAM; SSF111352; SSF111352; 2. DR PROSITE; PS01219; AMMONIUM_TRANSP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 73 94 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 106 126 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 196 217 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 224 245 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 265 291 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 303 323 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 338 359 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 366 384 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 390 409 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 421 445 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 465 486 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 74 518 Ammonium_transp. FT {ECO:0000259|Pfam:PF00909}. SQ SEQUENCE 521 AA; 54855 MW; 2321D849B6052DED CRC64; MNSRNYKYAL LLVAAVSITA AGAMSQAYAQ SVEDGMDGYV KGTSGIYTGN PNECWFDDGE GGMLPCMIDT GDTAWMLTAT SLVLFMSPGV GFFYGGLARS KNIVNVLGMT LIVMGLMSVQ WVLWGYSLAF APNADEGANM FMGSLDYAGF NMVSAWAPIG ELGPCHDTWS AAYQMNEFKE GEYCSQSWPG TVPHQMFAMF QGTFAIITPI LIIGGLIDRI KFSALVIFVL LWGTFVYDPI AHWVWGGGFI GGGGLDLDPD LSPTFALDFA GGTVVHISSG FAALAGALVL GRRLGYGKVP MEPHNIPMVV LGASILWFGW FGFNAGSEVM VDGITVSAWT VTNTATGMAA VTWVLMSWAH TGKPSIVGAA SGAVAGLVTI TPASGWVGPM AAIIMGIAAG TVCYACVAFK NARKWDDALD VWGIHGMGGL TGAILTGTLA SPHVWDTGDG IGAWTGTAEG MEQQAISIIG AAVSIAYAFG ITIVILKVMD AVWPGGIRVT PKEEEIGLDL AQHGERAYVN E // ID A9A2N2_NITMS Unreviewed; 325 AA. AC A9A2N2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13271.1}; GN OrderedLocusNames=Nmar_1375 {ECO:0000313|EMBL:ABX13271.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13271.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13271.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13271.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13271.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1375; -. DR EnsemblBacteria; ABX13271; ABX13271; Nmar_1375. DR KEGG; nmr:Nmar_1375; -. DR eggNOG; ENOG4102U9Z; Archaea. DR eggNOG; ENOG4110ZJU; LUCA. DR BioCyc; NMAR436308:GI3J-1409-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 325 AA; 37320 MW; 8846E88F90FCAD20 CRC64; MNVTDESNNH SINSLSPTLK EFAKKIQSKN RMGQDVCVRD FPELKEGAFR QRIKRLKDKG LIITVIKGTF CHYKIKGENT GRTKRTVTNE GMVVGTNMQE IINEASKQVP TIHDIKMNFP SVQIYKNAIK KGMVPNKHNK GIFLDSLTLS KDIYAKIVIY PKTISIDIGC TWEPIIYDIR GAQEFLGHVE FIRAYLYVEF KTKDMPHSLD WIVNHYHLNQ DGQTEFTGEP FKRTISDMVG GFIRIYAKKF PDKSTRVRLE RIITPKTSVK NQIEDMQNVG KYLHSEKRDI SNIMPSEILS LNQFAKTVEK ISSMHNPLQG GFFSL // ID A9A4H7_NITMS Unreviewed; 124 AA. AC A9A4H7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12955.1}; GN OrderedLocusNames=Nmar_1059 {ECO:0000313|EMBL:ABX12955.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12955.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12955.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12955.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12955.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1059; -. DR EnsemblBacteria; ABX12955; ABX12955; Nmar_1059. DR KEGG; nmr:Nmar_1059; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000106821; -. DR OMA; SHIAIKT; -. DR BioCyc; NMAR436308:GI3J-1090-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 124 AA; 14514 MW; 6060EFF24B18BFB4 CRC64; MKQNDCRDVC DTIATISPYI RFVGVIGESG ELLAYKRRQD LVPLLNEKNT QYQFSHIAIK TDLEGFFDKN LGEIEFVWEE RKKVQTISFA IKKQRVWISI DKKVIRSEML RIIDACLPIV KKYS // ID A9A5J6_NITMS Unreviewed; 245 AA. AC A9A5J6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 51. DE SubName: Full=Proteasome endopeptidase complex {ECO:0000313|EMBL:ABX12707.1}; DE EC=3.4.25.1 {ECO:0000313|EMBL:ABX12707.1}; GN OrderedLocusNames=Nmar_0811 {ECO:0000313|EMBL:ABX12707.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12707.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12707.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12707.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12707.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5J6; -. DR STRING; 436308.Nmar_0811; -. DR EnsemblBacteria; ABX12707; ABX12707; Nmar_0811. DR KEGG; nmr:Nmar_0811; -. DR eggNOG; arCOG00971; Archaea. DR eggNOG; COG0638; LUCA. DR HOGENOM; HOG000091085; -. DR KO; K03432; -. DR OMA; NYTEGTI; -. DR BioCyc; NMAR436308:GI3J-838-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0019773; C:proteasome core complex, alpha-subunit complex; IEA:InterPro. DR GO; GO:0004298; F:threonine-type endopeptidase activity; IEA:InterPro. DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro. DR Gene3D; 3.60.20.10; -; 1. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR000426; Proteasome_asu_N. DR InterPro; IPR023332; Proteasome_suA-type. DR InterPro; IPR001353; Proteasome_sua/b. DR Pfam; PF00227; Proteasome; 1. DR Pfam; PF10584; Proteasome_A_N; 1. DR SMART; SM00948; Proteasome_A_N; 1. DR SUPFAM; SSF56235; SSF56235; 1. DR PROSITE; PS51475; PROTEASOME_ALPHA_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12707.1}; KW Proteasome {ECO:0000313|EMBL:ABX12707.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 30 PROTEASOME_ALPHA_1. FT {ECO:0000259|SMART:SM00948}. SQ SEQUENCE 245 AA; 26719 MW; 8592A716F6BC9B1C CRC64; MLPAQQGYDR AITVFSPDGR LYQVEYAIET VRRGTIAVGV KCKDGIVIAV EEKPRKLQIS KTAQKIFQID DHVGVAAAGY IPDARSQVDN ARFFSQSNKM IYDEPVEVET IAKHLADQSQ QYTQYAGVRP FGVALILGGV VGGKPQLYLT DPSGTYISYD AIAIGSGSDE VTDFLEKTYK NDLSLDDASA LAAAGIYLSS EDKDGTGHIR MAHIKTDSGL YEIVSEEQVA NYANAAKQNY PHDKN // ID A9A1R2_NITMS Unreviewed; 132 AA. AC A9A1R2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12033.1}; GN OrderedLocusNames=Nmar_0133 {ECO:0000313|EMBL:ABX12033.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12033.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12033.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12033.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12033.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0133; -. DR EnsemblBacteria; ABX12033; ABX12033; Nmar_0133. DR KEGG; nmr:Nmar_0133; -. DR eggNOG; arCOG00830; Archaea. DR eggNOG; COG1247; LUCA. DR BioCyc; NMAR436308:GI3J-136-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR SUPFAM; SSF55729; SSF55729; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 132 AA; 16069 MW; A627672193DB4253 CRC64; MDEKDIRFLY QLLKLRKPLE NISHKNMPSY NEHTKFVKSK PYQKWYIIFE NKKKIGSTYI SKQDEISMHF LPKFDSNKNM NHVLELILEK HPKSRYLANT NYKNKSLITF YKNNGFKLIQ YTFELVKEKN LK // ID A9A2U4_NITMS Unreviewed; 337 AA. AC A9A2U4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase {ECO:0000313|EMBL:ABX13621.1}; GN OrderedLocusNames=Nmar_1725 {ECO:0000313|EMBL:ABX13621.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13621.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13621.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13621.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13621.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U4; -. DR STRING; 436308.Nmar_1725; -. DR EnsemblBacteria; ABX13621; ABX13621; Nmar_1725. DR KEGG; nmr:Nmar_1725; -. DR eggNOG; ENOG4102TUJ; Archaea. DR eggNOG; COG0482; LUCA. DR HOGENOM; HOG000009170; -. DR OMA; CIDCRIF; -. DR BioCyc; NMAR436308:GI3J-1770-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0004810; F:tRNA adenylyltransferase activity; IEA:InterPro. DR GO; GO:0008033; P:tRNA processing; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR008532; DUF814. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR020536; ThiI_AANH. DR InterPro; IPR004506; tRNA-specific_2-thiouridylase. DR PANTHER; PTHR11933; PTHR11933; 1. DR Pfam; PF05670; DUF814; 1. DR Pfam; PF02568; ThiI; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13621.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13621.1}. FT DOMAIN 8 152 ThiI. {ECO:0000259|Pfam:PF02568}. FT DOMAIN 241 309 DUF814. {ECO:0000259|Pfam:PF05670}. SQ SEQUENCE 337 AA; 37609 MW; DABC744AF6E42CE0 CRC64; MTEEKEKKKV VALLSGGLDS QLAVRMMQEQ GFDVSAVAIK TPFCDFDCGR GCGFEIRERA DDLNVNLKTV YLGDEYIEML KNPKHGIGAG FNPCIDCRAM MFDAAKKHME EIGAEFIVSG EVLGQRPMSQ HRPALRTIEK ESDLVGKIVR PLSAALLPET IPEKEGLIKR ENLGMIRGRT RRNQLDMAKQ YGIENPPNAG GGCLLTEPQF GIKAKDLFNH VENPTINDID LLKIGRHFRL DEETKFVVGR NKDENEMIKA IALPNDILLE AKDHVGPTSI LRGKNAKDHT KFAAAVTLRY SDAPKNQSEI VLVKNGDDSE EISAKSIEEE DYIKFRI // ID A9A5Q0_NITMS Unreviewed; 314 AA. AC A9A5Q0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13055.1}; GN OrderedLocusNames=Nmar_1159 {ECO:0000313|EMBL:ABX13055.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13055.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13055.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13055.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13055.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1159; -. DR EnsemblBacteria; ABX13055; ABX13055; Nmar_1159. DR KEGG; nmr:Nmar_1159; -. DR eggNOG; arCOG08191; Archaea. DR eggNOG; ENOG410Y4MM; LUCA. DR OMA; TSTESTW; -. DR BioCyc; NMAR436308:GI3J-1191-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR031009; Tcm_partner. DR TIGRFAMs; TIGR04474; tcm_partner; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 314 AA; 35773 MW; 1CA8D11FD173D7EC CRC64; MKQEDWIRNK LEILTKIAQK VPDSEIKNEY AEYTALKLIS VNYYKTTFLN VVRRNDKAKK YYDGAVYIDL FSGSGLVKLR ETGDIIAGSP LCALSHPDMN FDYAVCVEKD KKKSQVLEQR LDKILPKEKF NVIQGDCNAV ISNVVNNIKS KFSNPIVFTF VDPEGMEIKM KTLKFLSDSF PAQDFMINVG SQGLLRVKGK LDKGDTSTES TWNEYWGEEN AEALLYEISQ GQTIEDKYQE KLSEILGKKL GETIPIRGIP GNIEYYILAY SRKTKGDSKY VGSLTTLKSR IEKEDKKSVK RMMDVLSGRN QTLF // ID A9A5L3_NITMS Unreviewed; 464 AA. AC A9A5L3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Hydroxymethylglutaryl-CoA synthase {ECO:0000313|EMBL:ABX12724.1}; DE EC=2.3.3.10 {ECO:0000313|EMBL:ABX12724.1}; GN OrderedLocusNames=Nmar_0828 {ECO:0000313|EMBL:ABX12724.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12724.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12724.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12724.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12724.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5L3; -. DR STRING; 436308.Nmar_0828; -. DR PRIDE; A9A5L3; -. DR EnsemblBacteria; ABX12724; ABX12724; Nmar_0828. DR KEGG; nmr:Nmar_0828; -. DR eggNOG; arCOG01767; Archaea. DR eggNOG; COG3425; LUCA. DR HOGENOM; HOG000012352; -. DR KO; K01641; -. DR OMA; ALDTCYR; -. DR BioCyc; NMAR436308:GI3J-855-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004421; F:hydroxymethylglutaryl-CoA synthase activity; IEA:UniProtKB-EC. DR GO; GO:0008299; P:isoprenoid biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.47.10; -; 1. DR InterPro; IPR013746; HMG_CoA_synt_C_dom. DR InterPro; IPR013528; HMG_CoA_synth_N. DR InterPro; IPR016039; Thiolase-like. DR Pfam; PF08540; HMG_CoA_synt_C; 1. DR Pfam; PF01154; HMG_CoA_synt_N; 1. DR SUPFAM; SSF53901; SSF53901; 3. PE 4: Predicted; KW Acyltransferase {ECO:0000313|EMBL:ABX12724.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12724.1}. FT DOMAIN 3 173 HMG_CoA_synt_N. FT {ECO:0000259|Pfam:PF01154}. FT DOMAIN 180 428 HMG_CoA_synt_C. FT {ECO:0000259|Pfam:PF08540}. SQ SEQUENCE 464 AA; 52318 MW; EECF54283884C9E6 CRC64; MAAGIDDISI YIPRLYIDAA DFAEARGLDP VKLQKGLGVS QMAIVDANQD PAILAANACL KIMQKNKLSP EDIGRLYVST ESSFDESKAM NSFVIGMLEQ VYGQGAFEHC GGVETKFACV SGSYALYDNT NWIRAGEAEG KHALVVVSDI AKYDMGSSGE MTQGAGAVVM LLNDNPRLLA FDPKVTSTSI KDEYDFYRPF GKETPIVHGQ YSNMLYMIQV RKALEAYKKK VISTKLINIE QGETILDHMD YINMHLPYSN MGKKALAYLV RHEWRQLPRW KKVLQEIGMD EPIPKDPRGT IESVLGDEEF MAKDHEFTKL FTKTPEYQEV YESKLASSLI ASSMIGNLYT ASLYLGFRSS LEFEYQKGIQ LEGKRIGFGS YGSGSSAMVF SGVIQPEFEE IVKNMNLEAE IGERRRLTWE EYEELHENKL SPEESMLKSK KEFSLVDVKT ETESRGERRY IYNE // ID A9A1Q4_NITMS Unreviewed; 329 AA. AC A9A1Q4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 56. DE SubName: Full=dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:ABX12025.1}; GN OrderedLocusNames=Nmar_0125 {ECO:0000313|EMBL:ABX12025.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12025.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12025.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12025.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12025.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Q4; -. DR SMR; A9A1Q4; 1-327. DR STRING; 436308.Nmar_0125; -. DR EnsemblBacteria; ABX12025; ABX12025; Nmar_0125. DR KEGG; nmr:Nmar_0125; -. DR eggNOG; arCOG01371; Archaea. DR eggNOG; COG1088; LUCA. DR HOGENOM; HOG000168006; -. DR KO; K01710; -. DR OMA; HEDWWKA; -. DR BioCyc; NMAR436308:GI3J-128-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008460; F:dTDP-glucose 4,6-dehydratase activity; IEA:InterPro. DR GO; GO:0009225; P:nucleotide-sugar metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR005888; dTDP_Gluc_deHydtase. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF16363; GDP_Man_Dehyd; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01181; dTDP_gluc_dehyt; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 303 NAD(P)-bd_dom. FT {ECO:0000259|Pfam:PF16363}. SQ SEQUENCE 329 AA; 37692 MW; C90A186DCC2A44F8 CRC64; MKILVTGGLG FIGSNFIINY LNEFPEHTII NLDNENHGAN HQNLISIQKK NNYEFVKGDI TNHKLMKNLI SISDAIVNFA AESHVDRSIS DATPFINSNI LGVFTILEIL KKEKEKRLVQ ISTDEVFGSL KKNSANENFK LNPSSPYSSS KASAELLVNS YFVTYEIDTV ITRCTNNYGP RQFPEKLIPK TILLAMQKQK IPIYGNGKNI RDWIHVDDHC NAVKEVLHKG KSGESYNISA QNELDNIQIV TNILEKMGLN DDYLEFVEDR PGHDFRYSLD SSKIRNELKW KEETSFEDGI EKTIDWYVKN QEWCNGINKE ILKKAKWNN // ID A9A3I6_NITMS Unreviewed; 151 AA. AC A9A3I6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ABX12918.1}; GN OrderedLocusNames=Nmar_1022 {ECO:0000313|EMBL:ABX12918.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12918.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12918.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12918.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12918.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3I6; -. DR STRING; 436308.Nmar_1022; -. DR EnsemblBacteria; ABX12918; ABX12918; Nmar_1022. DR KEGG; nmr:Nmar_1022; -. DR eggNOG; arCOG03444; Archaea. DR eggNOG; COG1917; LUCA. DR OMA; AINILPR; -. DR BioCyc; NMAR436308:GI3J-1053-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.120.10; -; 1. DR InterPro; IPR013096; Cupin_2. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin. DR Pfam; PF07883; Cupin_2; 1. DR SUPFAM; SSF51182; SSF51182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 42 116 Cupin_2. {ECO:0000259|Pfam:PF07883}. SQ SEQUENCE 151 AA; 17491 MW; DD23CE277DD1B889 CRC64; MKKTNIQGSN DKRNVNPNWF TSKTWMKVLS EKIKSKDQDI YHVHFEKGSR TKLHAHNGNQ VLIATKGKGS LEIFRRYGTS KNNFKIKKTQ KITLNEGDIV HIPAKTLHTH GSTDKKKTFS HIAINILPRK NSEYKTVWWE SDFKTKATEV I // ID A9A2J5_NITMS Unreviewed; 265 AA. AC A9A2J5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Transcriptional regulator protein-like protein {ECO:0000313|EMBL:ABX13234.1}; GN OrderedLocusNames=Nmar_1338 {ECO:0000313|EMBL:ABX13234.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13234.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13234.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13234.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13234.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2J5; -. DR EnsemblBacteria; ABX13234; ABX13234; Nmar_1338. DR KEGG; nmr:Nmar_1338; -. DR eggNOG; arCOG04362; Archaea. DR eggNOG; COG4742; LUCA. DR HOGENOM; HOG000023856; -. DR OMA; YIREIMA; -. DR BioCyc; NMAR436308:GI3J-1372-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 265 AA; 31218 MW; E0F7B4DA06F05B39 CRC64; MVDFEYTSAE FLELASEIRL KILFDLIQKP SRLTTLAKKY NVSPQEIHRN FERMVNSGLI RKQENNFYTL TTFGRSISTQ IHSFSYLSQN KKYLQTHDFG NIPPKFLRRI GDLSNSKEIV GVSKVLETWK KIYRTSDEYI FNILSETPLD LIELMIRRVK RGVKYRHIIS ENASIPAGRK KLLEKSGFYP LLESGKIERR MLKTVQVSVI LNEHSAGLMF PDLSGKPDLR SMFYSQDEAF REWCLDYFKH YWNISDAFKE FKLKE // ID A9A5B2_NITMS Unreviewed; 146 AA. AC A9A5B2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12311.1}; GN OrderedLocusNames=Nmar_0415 {ECO:0000313|EMBL:ABX12311.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12311.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12311.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12311.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12311.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0415; -. DR EnsemblBacteria; ABX12311; ABX12311; Nmar_0415. DR KEGG; nmr:Nmar_0415; -. DR eggNOG; arCOG08664; Archaea. DR eggNOG; ENOG41111FF; LUCA. DR HOGENOM; HOG000105837; -. DR OMA; YPDGDEW; -. DR BioCyc; NMAR436308:GI3J-433-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 117 144 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 146 AA; 17063 MW; 0127C69CF9C7D3C3 CRC64; MHLNINEANT IFRKSIIKGF FEPKLVNLDF KKSSVKHPAI SDDGLMQSDL LHVFFDVETG ADYPDGDEWF IVDMLFPHDI KLPDNLKGTD YFTTLSVDDG KTYWHHRELI RYKYGKSKKL DNAIEFLESK YKELHALLEP LQKDLN // ID A9A1D7_NITMS Unreviewed; 116 AA. AC A9A1D7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12772.1}; GN OrderedLocusNames=Nmar_0876 {ECO:0000313|EMBL:ABX12772.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12772.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12772.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12772.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12772.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0876; -. DR EnsemblBacteria; ABX12772; ABX12772; Nmar_0876. DR KEGG; nmr:Nmar_0876; -. DR eggNOG; arCOG03067; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000108357; -. DR OMA; CTRAVLF; -. DR BioCyc; NMAR436308:GI3J-904-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR002831; Tscrpt_reg_TrmB_N. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01978; TrmB; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 34 71 TrmB. {ECO:0000259|Pfam:PF01978}. SQ SEQUENCE 116 AA; 13002 MW; B9B96F5D008CA072 CRC64; MSKPNIIQLS EFDITQKIIE SLSNVCTRAV LFSVKNESKD ATQIAEELKI SLSTVYKTLS NLEDLALAEV DKFIISPEGK KIKQYRSRIG KVEITVDNLE PSLNLYPNTD NPKSSL // ID A9A282_NITMS Unreviewed; 77 AA. AC A9A282; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12793.1}; GN OrderedLocusNames=Nmar_0897 {ECO:0000313|EMBL:ABX12793.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12793.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12793.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12793.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12793.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12793; ABX12793; Nmar_0897. DR KEGG; nmr:Nmar_0897; -. DR eggNOG; arCOG07442; Archaea. DR eggNOG; ENOG410Y0R8; LUCA. DR BioCyc; NMAR436308:GI3J-925-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 77 AA; 8653 MW; C9169B27E05BB610 CRC64; MSVIEAYDIK ARKKVSMKDP QPYLMKNGSW ALKGTSSETG IKLFKIVGRT KPSITQSRFE AFKNLFTSRG CECGKEC // ID A9A2Z1_NITMS Unreviewed; 289 AA. AC A9A2Z1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Formyl transferase domain protein {ECO:0000313|EMBL:ABX12119.1}; GN OrderedLocusNames=Nmar_0223 {ECO:0000313|EMBL:ABX12119.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12119.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12119.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12119.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12119.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z1; -. DR STRING; 436308.Nmar_0223; -. DR EnsemblBacteria; ABX12119; ABX12119; Nmar_0223. DR KEGG; nmr:Nmar_0223; -. DR eggNOG; arCOG02826; Archaea. DR eggNOG; COG0788; LUCA. DR HOGENOM; HOG000033576; -. DR KO; K01433; -. DR OMA; STHHETN; -. DR BioCyc; NMAR436308:GI3J-228-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0008864; F:formyltetrahydrofolate deformylase activity; IEA:InterPro. DR GO; GO:0016742; F:hydroxymethyl-, formyl- and related transferase activity; IEA:InterPro. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.170; -; 1. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR002376; Formyl_transf_N. DR InterPro; IPR004810; PurU. DR PANTHER; PTHR10520:SF7; PTHR10520:SF7; 1. DR Pfam; PF00551; Formyl_trans_N; 1. DR PRINTS; PR01575; FFH4HYDRLASE. DR SUPFAM; SSF53328; SSF53328; 1. DR PROSITE; PS51671; ACT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12119.1}. FT DOMAIN 16 94 ACT. {ECO:0000259|PROSITE:PS51671}. SQ SEQUENCE 289 AA; 32655 MW; 3F020C5A8E3343C4 CRC64; MRKSSKNKVM KKTVVGITVV GKDREGIVAS FTNFAFSKGG NIEKVNQNVI KGLFGMYLEV SFAKAVNVKK FDAEIQTLAK KEKMDVSTHH ETNSQKNIAV FVTKEPLCLQ TILAKSKSLK GKISVIIGTE KTLESLAKKA KIPFVAVEEK NQQKAEEKII QICKKYNIDL ISLARYMRIL SPNFVWRYPN RIINIHPSLL PAFPGALAYA QAYERGTKIV GVTSHYVTEN LDQGPIIFQD SFKVDPNDTL EKIKSKGQKL EADTLFKAMK MHLENKLDVR WRKVHIKSK // ID A9A1Z6_NITMS Unreviewed; 112 AA. AC A9A1Z6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12409.1}; GN OrderedLocusNames=Nmar_0513 {ECO:0000313|EMBL:ABX12409.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12409.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12409.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12409.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12409.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0513; -. DR EnsemblBacteria; ABX12409; ABX12409; Nmar_0513. DR KEGG; nmr:Nmar_0513; -. DR eggNOG; arCOG10528; Archaea. DR eggNOG; ENOG411116W; LUCA. DR BioCyc; NMAR436308:GI3J-534-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 112 AA; 13181 MW; 39B150631EEBB20E CRC64; MDFPIDSQKT LEVIERMKLA KIGEYKKWEV IIKKIKKDGP LNQGELEYYT NLTRIYKDSA ITSRSKIYHT KLSEHDEKPP CKECGKNSSF YCNMNDQYFC TIHVVGHDEN EI // ID A9A3V9_NITMS Unreviewed; 381 AA. AC A9A3V9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 50. DE SubName: Full=Aminotransferase class V {ECO:0000313|EMBL:ABX13659.1}; GN OrderedLocusNames=Nmar_1763 {ECO:0000313|EMBL:ABX13659.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13659.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13659.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13659.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13659.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V9; -. DR STRING; 436308.Nmar_1763; -. DR EnsemblBacteria; ABX13659; ABX13659; Nmar_1763. DR KEGG; nmr:Nmar_1763; -. DR eggNOG; arCOG00065; Archaea. DR eggNOG; COG0520; LUCA. DR HOGENOM; HOG000017511; -. DR KO; K11717; -. DR OMA; HVLISSM; -. DR BioCyc; NMAR436308:GI3J-1810-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000192; Aminotrans_V_dom. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00266; Aminotran_5; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 4: Predicted; KW Aminotransferase {ECO:0000313|EMBL:ABX13659.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13659.1}. FT DOMAIN 18 371 Aminotran_5. {ECO:0000259|Pfam:PF00266}. SQ SEQUENCE 381 AA; 42727 MW; 143F44DEA139AE3E CRC64; MNLVSKDISD DFPNSDKIYL NNASVSLMPI QSIEAMKDFL ISYNSLGPDS KESESFVTEK LRDVRKTIAK IISCQPDEVV LTQSTTDGIN IVANGLSFDE KSNVIIRGMT HEHHSNFYPW LKLKEKISLK NLSIDKDGFF KSEDLESLLD DNTKLVALSH ALYNTGSILP LEEITKLLSD VPLFVDSAQT VGCIDVDVSK INCNFMSFNG SKWLCGPMGT GLFYCNRKSS ELLEPKTIGG ESAIIYDDTS LAFKELPDKF QTGFRNYVGI VGLESSANYL LNFGLKNIRE KNQYLSNLLR EELSKIPKII LYGPEDPNSR TSIVSFNIDG MDSQEVVDRL EKQNIVLALR EIMETKIVRA SPHFFNSESE IMSVVDAIKR L // ID A9A5K5_NITMS Unreviewed; 244 AA. AC A9A5K5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Peptidase M10A and M12B matrixin and adamalysin {ECO:0000313|EMBL:ABX12716.1}; GN OrderedLocusNames=Nmar_0820 {ECO:0000313|EMBL:ABX12716.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12716.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12716.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12716.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12716.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5K5; -. DR EnsemblBacteria; ABX12716; ABX12716; Nmar_0820. DR KEGG; nmr:Nmar_0820; -. DR eggNOG; arCOG04994; Archaea. DR eggNOG; COG5549; LUCA. DR HOGENOM; HOG000023866; -. DR BioCyc; NMAR436308:GI3J-847-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031012; C:extracellular matrix; IEA:InterPro. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.390.10; -; 1. DR InterPro; IPR024079; MetalloPept_cat_dom. DR InterPro; IPR001818; Pept_M10_metallopeptidase. DR Pfam; PF00413; Peptidase_M10; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 123 233 Peptidase_M10. FT {ECO:0000259|Pfam:PF00413}. SQ SEQUENCE 244 AA; 27337 MW; 0135E65481136CF1 CRC64; MKITLNSKIF SCILAGFLML SIPGFIQDTD AVAPLTSKFL SLEKNGIITS AFWNILPHEE LDVVFLGSHL LTDKQLDAVV YALTSHDTIE LDDSANDNLV NSKSTYYLGW EGALTAAQNI DTENTIPTKF NIVSTLSDKN NIVIQFSNYR ESDGYSGYAR IFTHDREILQ SHIMIYDVEK LSAEDLTTII RHEFGHALGL GHSIDSNDLM SNMILTETPY ISQCHIDAVR DLYDNNDENF TVCN // ID A9A3Q3_NITMS Unreviewed; 227 AA. AC A9A3Q3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13315.1}; GN OrderedLocusNames=Nmar_1419 {ECO:0000313|EMBL:ABX13315.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13315.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13315.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13315.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13315.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1419; -. DR EnsemblBacteria; ABX13315; ABX13315; Nmar_1419. DR KEGG; nmr:Nmar_1419; -. DR eggNOG; arCOG08773; Archaea. DR eggNOG; ENOG411100Q; LUCA. DR HOGENOM; HOG000109159; -. DR OMA; THPLVDY; -. DR BioCyc; NMAR436308:GI3J-1454-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 227 AA; 26131 MW; D928AD68B2EC2A71 CRC64; MEQPSSPVDK QPRYIQVNST LEFTRLVCAL ERAPRVSFLH DHDGRKILSV QMDVLKEKPI VYFTPLDHNG HYLRYGLTGG KEESEIVDST SDSSKLYSPI VRIKSLPKTL KPGNGTLDRY QPIELEDMSS LAKLTWGFEE IPFPLFLFPH NDKWLLGVFM NFNEEGTSYF CHVLLDKDPE KPFLKFSTSN VIEPVFVDNP SEHGYSYIKI IKLKDTHPLV DYAHLQN // ID A9A210_NITMS Unreviewed; 63 AA. AC A9A210; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ABX12423.1}; GN OrderedLocusNames=Nmar_0527 {ECO:0000313|EMBL:ABX12423.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12423.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12423.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12423.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 CSD (cold-shock) domain. CC {ECO:0000256|RuleBase:RU000407}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12423.1; -; Genomic_DNA. DR ProteinModelPortal; A9A210; -. DR SMR; A9A210; 1-61. DR STRING; 436308.Nmar_0527; -. DR EnsemblBacteria; ABX12423; ABX12423; Nmar_0527. DR KEGG; nmr:Nmar_0527; -. DR eggNOG; arCOG02983; Archaea. DR eggNOG; COG1278; LUCA. DR HOGENOM; HOG000070674; -. DR KO; K03704; -. DR OMA; INANGFK; -. DR BioCyc; NMAR436308:GI3J-548-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR InterPro; IPR019844; Cold-shock_CS. DR InterPro; IPR012156; Cold_shock_CspA. DR InterPro; IPR011129; Cold_shock_prot. DR InterPro; IPR002059; CSP_DNA-bd. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF00313; CSD; 1. DR PIRSF; PIRSF002599; Cold_shock_A; 1. DR PRINTS; PR00050; COLDSHOCK. DR SMART; SM00357; CSP; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS00352; COLD_SHOCK; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000313|EMBL:ABX12423.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 62 CSP. {ECO:0000259|SMART:SM00357}. SQ SEQUENCE 63 AA; 7091 MW; 0E02A321ABC6D01B CRC64; MEQGTVKWFN RTKGFGFIER EGGDDLFVHK TDVDGFINEG DKVEFEVGEG RKGPAAQKVK KTE // ID A9A1Z1_NITMS Unreviewed; 103 AA. AC A9A1Z1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12404.1}; GN OrderedLocusNames=Nmar_0508 {ECO:0000313|EMBL:ABX12404.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12404.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12404.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12404.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12404.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0508; -. DR EnsemblBacteria; ABX12404; ABX12404; Nmar_0508. DR KEGG; nmr:Nmar_0508; -. DR eggNOG; arCOG08763; Archaea. DR eggNOG; ENOG4110ZWD; LUCA. DR HOGENOM; HOG000108914; -. DR OMA; QFREHAR; -. DR BioCyc; NMAR436308:GI3J-529-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 103 AA; 12654 MW; 6883C16CD5B79DAB CRC64; MRNDERYEIQ RAFDLLPHVI GASWASVEFR MKGIKKPTRE EFREKTLQYL KMVEPVFESY PQDEEFDAIR KYIDFRKNEE YEKIISGLNK EIEKRYDRYV DYG // ID A9A3N9_NITMS Unreviewed; 73 AA. AC A9A3N9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13301.1}; GN OrderedLocusNames=Nmar_1405 {ECO:0000313|EMBL:ABX13301.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13301.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13301.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13301.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13301.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1405; -. DR EnsemblBacteria; ABX13301; ABX13301; Nmar_1405. DR KEGG; nmr:Nmar_1405; -. DR eggNOG; arCOG08701; Archaea. DR eggNOG; ENOG4110ZWM; LUCA. DR HOGENOM; HOG000107053; -. DR OMA; FGASWII; -. DR BioCyc; NMAR436308:GI3J-1440-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 63 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 73 AA; 8093 MW; 3D787CF13C5553B7 CRC64; MSEDKKPAKL TKKEIFLRGS IIALITTVPS LIVFVLVWFF LDDVMIGAIS GAIAHFVAMG FSLKISKRLL VKK // ID A9A1H2_NITMS Unreviewed; 219 AA. AC A9A1H2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13151.1}; GN OrderedLocusNames=Nmar_1255 {ECO:0000313|EMBL:ABX13151.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13151.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13151.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13151.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13151.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1255; -. DR EnsemblBacteria; ABX13151; ABX13151; Nmar_1255. DR KEGG; nmr:Nmar_1255; -. DR eggNOG; arCOG08778; Archaea. DR eggNOG; ENOG41111NG; LUCA. DR BioCyc; NMAR436308:GI3J-1288-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 219 AA; 24756 MW; 5BD302B15824AC2C CRC64; MRVRNVILST IIVLSLTVLP SAHAEPIVEI IMEKTTYSYC EKLFYTIKVS EVTGNPAIIH IRDETGKGSS AIPFPVTELE NPVPSRVAFE KEIFPLGKYF IDIEYSGVQT TAEFTLIDSG KVCIPETVKP IMANWLSGNI SDGFLIDAFE KFTEDLELFK IPFDINETTV YDVRIPEWVK NVGYWWLEGM ISDDDLVNAI NNLVERNIIS LEQETGNEI // ID A9A1Z3_NITMS Unreviewed; 421 AA. AC A9A1Z3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 70. DE RecName: Full=Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; DE Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087}; DE EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; GN Name=hemA {ECO:0000256|HAMAP-Rule:MF_00087}; GN OrderedLocusNames=Nmar_0510 {ECO:0000313|EMBL:ABX12406.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12406.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12406.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12406.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the NADPH-dependent reduction of glutamyl- CC tRNA(Glu) to glutamate 1-semialdehyde (GSA). {ECO:0000256|HAMAP- CC Rule:MF_00087}. CC -!- CATALYTIC ACTIVITY: L-glutamate 1-semialdehyde + NADP(+) + CC tRNA(Glu) = L-glutamyl-tRNA(Glu) + NADPH. {ECO:0000256|HAMAP- CC Rule:MF_00087, ECO:0000256|RuleBase:RU000584}. CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step CC 1/2. {ECO:0000256|HAMAP-Rule:MF_00087, CC ECO:0000256|RuleBase:RU000584}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00087}. CC -!- DOMAIN: Possesses an unusual extended V-shaped dimeric structure CC with each monomer consisting of three distinct domains arranged CC along a curved 'spinal' alpha-helix. The N-terminal catalytic CC domain specifically recognizes the glutamate moiety of the CC substrate. The second domain is the NADPH-binding domain, and the CC third C-terminal domain is responsible for dimerization. CC {ECO:0000256|HAMAP-Rule:MF_00087}. CC -!- MISCELLANEOUS: During catalysis, the active site Cys acts as a CC nucleophile attacking the alpha-carbonyl group of tRNA-bound CC glutamate with the formation of a thioester intermediate between CC enzyme and glutamate, and the concomitant release of tRNA(Glu). CC The thioester intermediate is finally reduced by direct hydride CC transfer from NADPH, to form the product GSA. {ECO:0000256|HAMAP- CC Rule:MF_00087}. CC -!- SIMILARITY: Belongs to the glutamyl-tRNA reductase family. CC {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12406.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Z3; -. DR STRING; 436308.Nmar_0510; -. DR EnsemblBacteria; ABX12406; ABX12406; Nmar_0510. DR KEGG; nmr:Nmar_0510; -. DR eggNOG; arCOG01036; Archaea. DR eggNOG; COG0373; LUCA. DR HOGENOM; HOG000109651; -. DR KO; K02492; -. DR OMA; NHCPNIK; -. DR BioCyc; NMAR436308:GI3J-531-MONOMER; -. DR UniPathway; UPA00251; UER00316. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008883; F:glutamyl-tRNA reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00087; Glu_tRNA_reductase; 1. DR InterPro; IPR000343; 4pyrrol_synth_GluRdtase. DR InterPro; IPR015896; 4pyrrol_synth_GluRdtase_dimer. DR InterPro; IPR015895; 4pyrrol_synth_GluRdtase_N. DR InterPro; IPR018214; GluRdtase_CS. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR006151; Shikm_DH/Glu-tRNA_Rdtase. DR Pfam; PF00745; GlutR_dimer; 1. DR Pfam; PF05201; GlutR_N; 1. DR Pfam; PF01488; Shikimate_DH; 1. DR PIRSF; PIRSF000445; 4pyrrol_synth_GluRdtase; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF69075; SSF69075; 1. DR SUPFAM; SSF69742; SSF69742; 1. DR TIGRFAMs; TIGR01035; hemA; 1. DR PROSITE; PS00747; GLUTR; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW NADP {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|PIRSR:PIRSR000445- KW 3, ECO:0000256|RuleBase:RU000584}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00087, KW ECO:0000256|RuleBase:RU000584, ECO:0000313|EMBL:ABX12406.1}; KW Porphyrin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00087, KW ECO:0000256|RuleBase:RU000584}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 153 GlutR_N. {ECO:0000259|Pfam:PF05201}. FT DOMAIN 169 301 Shikimate_DH. {ECO:0000259|Pfam:PF01488}. FT DOMAIN 317 413 GlutR_dimer. {ECO:0000259|Pfam:PF00745}. FT NP_BIND 187 192 NADP. {ECO:0000256|HAMAP-Rule:MF_00087, FT ECO:0000256|PIRSR:PIRSR000445-3}. FT REGION 49 52 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00087}. FT REGION 112 114 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00087}. FT ACT_SITE 50 50 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00087, FT ECO:0000256|PIRSR:PIRSR000445-1}. FT BINDING 107 107 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00087}. FT BINDING 118 118 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00087, FT ECO:0000256|PIRSR:PIRSR000445-2}. FT SITE 97 97 Important for activity. FT {ECO:0000256|HAMAP-Rule:MF_00087, FT ECO:0000256|PIRSR:PIRSR000445-4}. SQ SEQUENCE 421 AA; 47386 MW; 85C0C3D3E95188C4 CRC64; MSQNIINARV TFRNSPIHIL ERFTIKDIEE AYDQFKKHSG LDECVIIQTC NRIELFGKSK SQEVDKIKKT WASLAGLEEQ VFDENMEVEE NQNALHHLLK LTSGLDSMVL GEEQILGQIK NSITSARERK ASGQHLNTLF DKAIRIGTRI RNNSGIGKGG ISVGSMAVKL AEENIDELKT KKTLLIGTGE VSTLVAKSLQ RRGYAFDVTS RTLSRSETFC ETMGGTPVKF EEILSGFDNY DVIFVATTAP YFLVTYERIT EAMKDKNKGM MILDLSNPRT VDEKVATIGG IKLMNLDQIA EMVEKNMNAR LNKVKTVESI INEEVSVLEA SMKRLEAEPL VKDVFKNIES LREKELQKAL QMLDEKDEKR IKIIDELTKA VVESIVSTPM NNIRKASEQG NPEVVDLASK LFDYKKQEQA D // ID A9A5G8_NITMS Unreviewed; 128 AA. AC A9A5G8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12679.1}; GN OrderedLocusNames=Nmar_0783 {ECO:0000313|EMBL:ABX12679.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12679.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12679.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12679.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12679.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0783; -. DR EnsemblBacteria; ABX12679; ABX12679; Nmar_0783. DR KEGG; nmr:Nmar_0783; -. DR eggNOG; arCOG10549; Archaea. DR eggNOG; ENOG41111MI; LUCA. DR HOGENOM; HOG000023869; -. DR OMA; QYTALIC; -. DR BioCyc; NMAR436308:GI3J-809-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 128 AA; 14151 MW; 9A5868174DC2931B CRC64; MKQYTALICI AVGVIVVMGI FFGADFFKFS VATQDYEIFV DPLLDEQGMF TMGRVTIQNI GAKPITNLHI NFGDGDILDI QTLSVGQKII VSPPPENSME FVMISADNDI FVNKAYREMP KMVGMMGS // ID A9A1P9_NITMS Unreviewed; 208 AA. AC A9A1P9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13564.1}; GN OrderedLocusNames=Nmar_1668 {ECO:0000313|EMBL:ABX13564.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13564.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13564.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13564.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13564.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1668; -. DR EnsemblBacteria; ABX13564; ABX13564; Nmar_1668. DR KEGG; nmr:Nmar_1668; -. DR eggNOG; ENOG4102UA0; Archaea. DR eggNOG; ENOG410ZQMF; LUCA. DR BioCyc; NMAR436308:GI3J-1713-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR028229; PHINT_rpt. DR Pfam; PF14882; PHINT_rpt; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 208 AA; 25064 MW; 98D7375C4ABC1FE0 CRC64; MTIRKNMKFK SFKNARDYVH SLKLKNEREW ILFCKSNKKP QDIPSVPRKH YAKKWKGLGD WLGTYTVAPQ NKKFRSFKDA RKFAHSLNLR TYYDWLEFCK SNKKPQDIPS VPRQYYTKEW KGFGDWLGTY TVAPQNKKFR PFNQARMFAR KLKLCNYLQW VQYYKTFQLP ADIPTTPNRT YKNKGWAGWP DWLGTRNNIL EKDEKPIS // ID A9A3B5_NITMS Unreviewed; 313 AA. AC A9A3B5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Deoxyhypusine synthase {ECO:0000313|EMBL:ABX12544.1}; DE EC=2.5.1.46 {ECO:0000313|EMBL:ABX12544.1}; GN OrderedLocusNames=Nmar_0648 {ECO:0000313|EMBL:ABX12544.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12544.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12544.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12544.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12544.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3B5; -. DR STRING; 436308.Nmar_0648; -. DR EnsemblBacteria; ABX12544; ABX12544; Nmar_0648. DR KEGG; nmr:Nmar_0648; -. DR eggNOG; arCOG04142; Archaea. DR eggNOG; COG1899; LUCA. DR HOGENOM; HOG000228838; -. DR KO; K00809; -. DR OMA; SWGKIKE; -. DR BioCyc; NMAR436308:GI3J-673-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0034038; F:deoxyhypusine synthase activity; IEA:UniProtKB-EC. DR GO; GO:0050983; P:deoxyhypusine biosynthetic process from spermidine; IEA:UniProtKB-EC. DR GO; GO:0008612; P:peptidyl-lysine modification to peptidyl-hypusine; IEA:InterPro. DR Gene3D; 3.40.910.10; -; 1. DR InterPro; IPR002773; Deoxyhypusine_synthase. DR InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom. DR PANTHER; PTHR11703; PTHR11703; 1. DR Pfam; PF01916; DS; 1. DR SUPFAM; SSF52467; SSF52467; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12544.1}. SQ SEQUENCE 313 AA; 34918 MW; A259580518D22F3B CRC64; MVDPGRPVKD IEIDSNTSIE KIFQELSQSG GFESVNLSTG VDILSEMISD KQCLKFISFV GAVVSTGLRG ILKDMLKNKW FDVAITTCGA LDHDIARHFS HYKEGSFTMD DNELADQDIH RLGNVLVPMD SYGPLIEEKM QTFLEEEYQN GVKEMTTAEI CKMIGKHLGE DSFLYWAYKN HISVVVPGIM DGAVGSQIWL FTQKHNDFKL NMAGDADLLS GYIFKAEKSG AFMIGGGISK HHTLWWNQYR EGLDYAFYIT TAQEFDGSLS GALVREAISW GKVTQKAKQS TLHAEVTTIL PFIYAALVTK LQS // ID A9A2I4_NITMS Unreviewed; 123 AA. AC A9A2I4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13223.1}; GN OrderedLocusNames=Nmar_1327 {ECO:0000313|EMBL:ABX13223.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13223.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13223.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13223.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13223.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1327; -. DR EnsemblBacteria; ABX13223; ABX13223; Nmar_1327. DR KEGG; nmr:Nmar_1327; -. DR eggNOG; arCOG11048; Archaea. DR eggNOG; ENOG41111R3; LUCA. DR BioCyc; NMAR436308:GI3J-1361-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 34 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 68 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 98 116 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 123 AA; 13788 MW; DBEC2DE592D1CA2C CRC64; MLEPYLLAIS NIFLQLDYIN PFDDPSDIVT QDDVIAGSVT VAIAGLSIFL TVMAVSAYRK TGVSQLKYVA LAFSLFTIYL ITEALQELFP IDDDSFDLFL SIIMMAILIS FFFGIMRKKK NNI // ID A9A1Y7_NITMS Unreviewed; 201 AA. AC A9A1Y7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12400.1}; GN OrderedLocusNames=Nmar_0504 {ECO:0000313|EMBL:ABX12400.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12400.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12400.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12400.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12400.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0504; -. DR EnsemblBacteria; ABX12400; ABX12400; Nmar_0504. DR KEGG; nmr:Nmar_0504; -. DR eggNOG; arCOG08762; Archaea. DR eggNOG; ENOG41111J4; LUCA. DR OMA; NEIHIMP; -. DR BioCyc; NMAR436308:GI3J-524-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 189 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 201 AA; 22100 MW; EA59F4F06D38C0EB CRC64; MKKRGPIIAI SGIVLVIISL SIAASAIPTN VTGPGDFFVS SLFEEMFDEI SNEIHIMPQD SAHFSYTTYS SDVPILWGIQ IIDYQAGDEL SITISNIFGD DYGTFIQNEP ILFEVLQISQ SDTLNLEIEN LGARDVTIIT MFSEDPENSE SFTNPDSPVM SMVVPLMVSG ILLVLGITVS IIGVIVVLVD LKNKYDNKRN Y // ID A9A2U9_NITMS Unreviewed; 248 AA. AC A9A2U9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; GN OrderedLocusNames=Nmar_1730 {ECO:0000313|EMBL:ABX13626.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13626.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13626.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13626.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 PPIase FKBP-type domain. CC {ECO:0000256|RuleBase:RU004231}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13626.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U9; -. DR STRING; 436308.Nmar_1730; -. DR EnsemblBacteria; ABX13626; ABX13626; Nmar_1730. DR KEGG; nmr:Nmar_1730; -. DR eggNOG; arCOG00980; Archaea. DR eggNOG; COG1047; LUCA. DR HOGENOM; HOG000154891; -. DR KO; K01802; -. DR OMA; ILLDYTV; -. DR BioCyc; NMAR436308:GI3J-1775-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR InterPro; IPR001179; PPIase_FKBP_dom. DR Pfam; PF00254; FKBP_C; 1. DR PROSITE; PS50059; FKBP_PPIASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000256|RuleBase:RU004231}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Rotamase {ECO:0000256|RuleBase:RU004231}. FT DOMAIN 6 111 PPIase FKBP-type. FT {ECO:0000259|PROSITE:PS50059}. SQ SEQUENCE 248 AA; 27950 MW; 21C0FFF2CB830F98 CRC64; MTFDKGSLIL VDYTAKVKDS EEVFDTTLEE DAKKYSIHEQ NVKYQPKLVS IGEVSYPVLK GLDEALAKTA VGDKLTVEVT PEKGFGERDS GKVRMIPIRK LGEDAEKVSV GDTIEVDNKR GIIRFIGSGR VQIDYNHRYA GKTILFDVNV LKSLDSPNDK VDGILKNRLP VEDSKISFDL KDKEVSITIP EEILRADGLQ IMKHFIQLDI FKFVPTLEKV NFVETHVNKQ TKEKKPETKE KAPEQKAA // ID A9A129_NITMS Unreviewed; 312 AA. AC A9A129; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE SubName: Full=ABC transporter related {ECO:0000313|EMBL:ABX11990.1}; GN OrderedLocusNames=Nmar_0090 {ECO:0000313|EMBL:ABX11990.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11990.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11990.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11990.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11990.1; -; Genomic_DNA. DR ProteinModelPortal; A9A129; -. DR STRING; 436308.Nmar_0090; -. DR EnsemblBacteria; ABX11990; ABX11990; Nmar_0090. DR KEGG; nmr:Nmar_0090; -. DR eggNOG; arCOG00194; Archaea. DR eggNOG; COG1131; LUCA. DR KO; K01990; -. DR OMA; QSRRQLW; -. DR BioCyc; NMAR436308:GI3J-91-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 234 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 312 AA; 35274 MW; 63E972467734DF00 CRC64; MSCIDVNHLS KSYGSLKAVD DIVLSVKPGQ VFGFLGPNGA GKSTTIKLLT TLIPPSNGSL EILGIDAIKN PLEIRHKIGV VLQQPSYEPT LSVEKSLDKY GMMWDVPKIQ RKERMEQLMK DFDLVEIRKK RNEDLSIGQR RRVQVAREFM HDMDLLFLDE PTVGLDPSAR RKLLDYLKNK VKTGLTIFYT THILTEAEYL CDEIAIIDKG KIVTVDSPEA LKSKFGKEKT IKIHLLEKNS KILDLLEGIS DCKINFESGT NIVIHSEQSE LVLLKVLKIL NDNDIEIEDL SAIPTNLEEI FLKMVRENES NN // ID A9A2R9_NITMS Unreviewed; 344 AA. AC A9A2R9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=H(+)-transporting two-sector ATPase {ECO:0000313|EMBL:ABX13596.1}; DE EC=3.6.3.14 {ECO:0000313|EMBL:ABX13596.1}; GN OrderedLocusNames=Nmar_1700 {ECO:0000313|EMBL:ABX13596.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13596.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13596.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13596.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13596.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2R9; -. DR STRING; 436308.Nmar_1700; -. DR EnsemblBacteria; ABX13596; ABX13596; Nmar_1700. DR KEGG; nmr:Nmar_1700; -. DR eggNOG; arCOG02459; Archaea. DR eggNOG; COG1527; LUCA. DR HOGENOM; HOG000109114; -. DR KO; K02119; -. DR OMA; RGKFWGL; -. DR BioCyc; NMAR436308:GI3J-1745-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR InterPro; IPR002843; ATPase_V0-cplx_csu/dsu. DR Pfam; PF01992; vATP-synt_AC39; 1. DR SUPFAM; SSF103486; SSF103486; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13596.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 344 AA; 38926 MW; 99823CDDFDBF4D5E CRC64; MGKNVYASVK SYSQRGKLLS RADFQTLAES RDLDEFMTRI KNTIYGDSIN DVQKPYTSQG IESAFRGHLA DVHYSIAKTA GDSDILDAYY MKFIISNLKL ILKGKVLGKS QEEIENHINL RAEELVKQRD IIIKSLVAKD LEEAVASLNS VQFGDEIAKA ATLYNETKNI QVFDTYFDKI LYQQLGRALK NTRDRDVIKI VGMDVDFYNL LSVIRGKFWG LEESQIQDLI VTQTPTVPRE LLGRMMAAGS VRDALNELAT TKYKDMIPQM ENELDAVAEF ERAFEMSIYH SSARAFTKMF SFATIIGITK LTGFEVRNLA AIAYAVEQKI PTETTMSKLI LEEE // ID A9A5M7_NITMS Unreviewed; 321 AA. AC A9A5M7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Luciferase family protein {ECO:0000313|EMBL:ABX12738.1}; GN OrderedLocusNames=Nmar_0842 {ECO:0000313|EMBL:ABX12738.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12738.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12738.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12738.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12738.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5M7; -. DR STRING; 436308.Nmar_0842; -. DR EnsemblBacteria; ABX12738; ABX12738; Nmar_0842. DR KEGG; nmr:Nmar_0842; -. DR eggNOG; arCOG02410; Archaea. DR eggNOG; COG2141; LUCA. DR HOGENOM; HOG000106764; -. DR OMA; NQAYSRQ; -. DR BioCyc; NMAR436308:GI3J-869-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016705; F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; IEA:InterPro. DR Gene3D; 3.20.20.30; -; 1. DR InterPro; IPR011251; Luciferase-like_dom. DR Pfam; PF00296; Bac_luciferase; 1. DR SUPFAM; SSF51679; SSF51679; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 295 Bac_luciferase. FT {ECO:0000259|Pfam:PF00296}. SQ SEQUENCE 321 AA; 36082 MW; 19BEBDB35C786653 CRC64; MRIACSLGSM LSVNEVLNCA EIISKTTADA IWMPETWGME NFSMLSAVSS KTSTQKIGSS IINIYSRSPA AIAMGAVTVD TISKGRVILG LGTSSLPIVE TFHGYNFEKP LQRMKEYVEI IKMITSGKPI NYSGKIFNLK NFTLLIKPQR ESIPIYIAAV NEKMVNLTWD LGDGVIFYLR PKNEMKETIQ KMQSKRKIDV TCQIITCVSN NAEEAIERAK KTLAFYVSVG KIYREFLAKN GFEKETSNIF EEFKKSGFSS NHELVPDSML KELTISGTPE ECKKQLDVFR QTGIDLPIIQ FNPVGDTMES FRLLQKTFLD E // ID A9A1J9_NITMS Unreviewed; 127 AA. AC A9A1J9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13178.1}; GN OrderedLocusNames=Nmar_1282 {ECO:0000313|EMBL:ABX13178.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13178.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13178.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13178.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13178.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1282; -. DR EnsemblBacteria; ABX13178; ABX13178; Nmar_1282. DR KEGG; nmr:Nmar_1282; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000023845; -. DR BioCyc; NMAR436308:GI3J-1315-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 127 AA; 14575 MW; 46C6EF4689761359 CRC64; MSSDEITKFE QSCQKILELP KIRFVGVINN MGSKIAGNFK EGVTSFLPDK ENRRMYVQLM LEYMMRKDFD EKLGSIDYIV SRRTNVTMIS IPTKEYLVLI SAERDANAQD IVREVNSAFT SLPDVKP // ID A9A4N4_NITMS Unreviewed; 94 AA. AC A9A4N4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ABX13012.1}; GN OrderedLocusNames=Nmar_1116 {ECO:0000313|EMBL:ABX13012.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13012.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13012.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13012.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13012.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N4; -. DR STRING; 436308.Nmar_1116; -. DR EnsemblBacteria; ABX13012; ABX13012; Nmar_1116. DR KEGG; nmr:Nmar_1116; -. DR eggNOG; arCOG08661; Archaea. DR eggNOG; ENOG410Y8HS; LUCA. DR HOGENOM; HOG000081734; -. DR OMA; VEHESKE; -. DR BioCyc; NMAR436308:GI3J-1147-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW. DR InterPro; IPR007138; ABM_dom. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR Pfam; PF03992; ABM; 1. DR SUPFAM; SSF54909; SSF54909; 1. DR PROSITE; PS51725; ABM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Monooxygenase {ECO:0000313|EMBL:ABX13012.1}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13012.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 91 ABM. {ECO:0000259|PROSITE:PS51725}. SQ SEQUENCE 94 AA; 10835 MW; 011D85D16CA97CEE CRC64; MFVMIADVQL KDGAEDDFKS WFSESNKVLA NFPGFISRKF LKSADGSYRI VVEHESKETF IKMHNSPEHE KLHPQGHSYM SEPPQRKTYT VAAE // ID A9A3U8_NITMS Unreviewed; 130 AA. AC A9A3U8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13360.1}; GN OrderedLocusNames=Nmar_1464 {ECO:0000313|EMBL:ABX13360.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13360.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13360.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13360.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13360.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1464; -. DR EnsemblBacteria; ABX13360; ABX13360; Nmar_1464. DR KEGG; nmr:Nmar_1464; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR OMA; GNIVETN; -. DR BioCyc; NMAR436308:GI3J-1501-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 130 AA; 14905 MW; E70FAB1BD7D97504 CRC64; MSVTQNVNEN EEKLLNMILG EIPSSRVAII CDHEGNILWN SIRDNTTSYL TVDETKESLK RSIESWEKRD VLSEKIGKGK YAIVAYDKIK RITVPLPNNH LLFVSLEGEE FGNIQNIMTI VNWVEENMPL // ID A9A2V3_NITMS Unreviewed; 165 AA. AC A9A2V3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13630.1}; GN OrderedLocusNames=Nmar_1734 {ECO:0000313|EMBL:ABX13630.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13630.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13630.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13630.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13630.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1734; -. DR EnsemblBacteria; ABX13630; ABX13630; Nmar_1734. DR KEGG; nmr:Nmar_1734; -. DR eggNOG; arCOG05392; Archaea. DR eggNOG; COG5615; LUCA. DR HOGENOM; HOG000109346; -. DR OMA; LAFTTWI; -. DR BioCyc; NMAR436308:GI3J-1779-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR008457; Cu-R_CopD. DR Pfam; PF05425; CopD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 35 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 56 74 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 115 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 161 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 51 161 CopD. {ECO:0000259|Pfam:PF05425}. SQ SEQUENCE 165 AA; 18305 MW; 9BCC4D228366C58A CRC64; MAAIEQAILT WIHLVAAAIW VGGSLFIGIV FSPLLKTMTN SIEERMQIMI RVGRRFNKVA VPSLIILMAT GLYSSHVLLS KPELLVATSY GTFLIIKILL VIALIITYIV HVRVIRKDVE DKIMSNQMPE PQIQKLRKKI IILGEITVVL SVAILFFAAL LDAGV // ID A9A5Q9_NITMS Unreviewed; 224 AA. AC A9A5Q9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13064.1}; GN OrderedLocusNames=Nmar_1168 {ECO:0000313|EMBL:ABX13064.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13064.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13064.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13064.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13064.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13064; ABX13064; Nmar_1168. DR KEGG; nmr:Nmar_1168; -. DR BioCyc; NMAR436308:GI3J-1200-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 224 AA; 26386 MW; 8747DBB471E59D48 CRC64; MVNRITKRSE HGNTLQIIQK FLAKVEEATV SQIEKELASK EIKYKSKRSV IARLNRLVEQ NFLEKIEYKD VPRYCLPNGR MTPSHIGLMI KTETNNFLGK TMSRIGAKKF LKFYSKFAGV YEMYVEALSW KLFKDEKNFR KRTRSREEFL QEALQLRIPF PKSIAELAQI HDMKKIEIIY KNCEKIVLET ESKLDEECLE ICKGMFRITE EKISHIAKTK DPIL // ID A9A184_NITMS Unreviewed; 150 AA. AC A9A184; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12370.1}; GN OrderedLocusNames=Nmar_0474 {ECO:0000313|EMBL:ABX12370.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12370.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12370.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12370.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12370.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0474; -. DR EnsemblBacteria; ABX12370; ABX12370; Nmar_0474. DR KEGG; nmr:Nmar_0474; -. DR eggNOG; arCOG08735; Archaea. DR eggNOG; ENOG411100R; LUCA. DR HOGENOM; HOG000108058; -. DR OMA; VKHIHIN; -. DR BioCyc; NMAR436308:GI3J-494-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR011033; PRC_barrel-like. DR SUPFAM; SSF50346; SSF50346; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 150 AA; 17034 MW; 989E8FC17DA35737 CRC64; MSVKLEGMPS NLATADTFTG KKVIDREGIE YGKVKHIHIN QDTLIVSGVT IHQGFNKDYF LSDDYIDKFS EETLLLSRPP VRTGIPVTDI DQNKIGKVKR LHRHPDTNEL ESIEVSDGLM HSKILSKSEI WGIGEKVILR MTKEEFKNLE // ID A9A1R0_NITMS Unreviewed; 351 AA. AC A9A1R0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=N-acylneuraminate-9-phosphate synthase {ECO:0000313|EMBL:ABX12031.1}; DE EC=2.5.1.57 {ECO:0000313|EMBL:ABX12031.1}; GN OrderedLocusNames=Nmar_0131 {ECO:0000313|EMBL:ABX12031.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12031.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12031.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12031.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12031.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R0; -. DR STRING; 436308.Nmar_0131; -. DR EnsemblBacteria; ABX12031; ABX12031; Nmar_0131. DR KEGG; nmr:Nmar_0131; -. DR eggNOG; arCOG01050; Archaea. DR eggNOG; COG2089; LUCA. DR HOGENOM; HOG000284783; -. DR OMA; AYPSKIE; -. DR BioCyc; NMAR436308:GI3J-134-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0047444; F:N-acylneuraminate-9-phosphate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0016051; P:carbohydrate biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR Gene3D; 3.90.1210.10; -; 1. DR InterPro; IPR006190; AFP_Neu5c_C. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR013132; Neu5Ac_N. DR Pfam; PF03102; NeuB; 1. DR SUPFAM; SSF51269; SSF51269; 1. DR PROSITE; PS50844; AFP_LIKE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12031.1}. FT DOMAIN 293 351 AFP-like. {ECO:0000259|PROSITE:PS50844}. SQ SEQUENCE 351 AA; 39372 MW; A8DA0514D3E09562 CRC64; MITMKSFSAL DRVFVIAEAG SNWKCGDYSD DLEQAKKLIE TAAKAGADAV KFQTYKPETI YVSDAGNSDY LEKYGIKENI NEIFEHLSMP YEMIPELKKY CDEKNIQFMS TPFSVQDAKE VDKFTEIHKV ASFEINHIRL LEFLAKTQKP IIVSTGASTF KEIDFAINLI RKNGNDNIAL MQCTSKYPCP IDSLNLKTIS TMGQKYKIPV GLSDHSLDPI IGPITAISLG AKFIEKHFTL DKNLPGPDHP FALNPDELEL MITSIRNTEK ALGTGIKEIL PVEDELRKFA KRSIQAIQDI KKGDLLIEGQ NFEILRPGNR LRGMDPLYLD TISGKKSKKD VQKGDGIIDV E // ID A9A1V9_NITMS Unreviewed; 508 AA. AC A9A1V9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE SubName: Full=Cytochrome c oxidase subunit I {ECO:0000313|EMBL:ABX12080.1}; GN OrderedLocusNames=Nmar_0184 {ECO:0000313|EMBL:ABX12080.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12080.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12080.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12080.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the heme-copper respiratory oxidase family. CC {ECO:0000256|RuleBase:RU000370}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12080.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1V9; -. DR STRING; 436308.Nmar_0184; -. DR EnsemblBacteria; ABX12080; ABX12080; Nmar_0184. DR KEGG; nmr:Nmar_0184; -. DR eggNOG; arCOG01237; Archaea. DR eggNOG; COG0843; LUCA. DR HOGENOM; HOG000085274; -. DR KO; K02274; -. DR OMA; HYIGIAG; -. DR BioCyc; NMAR436308:GI3J-186-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0070469; C:respiratory chain; IEA:UniProtKB-KW. DR GO; GO:0004129; F:cytochrome-c oxidase activity; IEA:InterPro. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0009060; P:aerobic respiration; IEA:InterPro. DR Gene3D; 1.20.210.10; -; 1. DR InterPro; IPR000883; COX1. DR InterPro; IPR023616; Cyt_c_Oxase_su1_dom. DR PANTHER; PTHR10422; PTHR10422; 1. DR Pfam; PF00115; COX1; 1. DR PRINTS; PR01165; CYCOXIDASEI. DR SUPFAM; SSF81442; SSF81442; 1. DR PROSITE; PS50855; COX1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Electron transport {ECO:0000256|RuleBase:RU000370}; KW Heme {ECO:0000256|RuleBase:RU000370}; KW Iron {ECO:0000256|RuleBase:RU000370}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Metal-binding {ECO:0000256|RuleBase:RU000370}; KW Oxidoreductase {ECO:0000256|RuleBase:RU000370}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Respiratory chain {ECO:0000256|RuleBase:RU000370}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU000370}. FT TRANSMEM 25 45 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 74 95 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 107 127 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 147 171 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 183 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 232 257 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 269 290 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 305 326 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 338 358 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 378 401 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 413 436 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 456 477 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 6 508 COX1. {ECO:0000259|PROSITE:PS50855}. SQ SEQUENCE 508 AA; 56221 MW; 3E4DAAE1BFE57E55 CRC64; MVLELQKPRP IWQIMFSTHH TDVGLLYLIM SLGFLFLGGA LALAIRAELF LPGAQIIGDA MTFNRIFTVH GTTLIFLFII PFASAVGNYF VPIMVRYKDM AYPKLNAIAF WMIPPSGALI WLGFADFTWY ATPPYSIISA PGPAADMWIF GLKILGVSSV LGAINFVVTI LKCKHPDMSI GQVPLLAWSF LSSSLIILVA IPTFAAALLM LLTDRLGVTG FFNPAMGGDP IAYAHLFWFT FHPEVYVLVI PAIGMMYEII PRFSRKPIYS FNSGIFAFVL LSIVGFSSWA HHMYATGMSF TEKTVFMVGT LAAVPASAMH VYNFIATMWN GRIKFSTPMM WAVGGIALFF SAGAGGVANA AMPLDFTTHD TYWVVGHFHL FVMGTIAFGS IGFLYYMYPY VTGRMYNEAM GKIHFFLSFI GTILVFFTQH VLGLYGMPRR IFDYPPIPEW IAMNQIASIG AMVIGVSMVV FLVNMVYSAG KGEPANPEDP FGVGGKYYYP FESKNPSH // ID A9A3H9_NITMS Unreviewed; 343 AA. AC A9A3H9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Proteinase inhibitor I1 Kazal {ECO:0000313|EMBL:ABX12911.1}; GN OrderedLocusNames=Nmar_1015 {ECO:0000313|EMBL:ABX12911.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12911.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12911.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12911.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12911.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3H9; -. DR STRING; 436308.Nmar_1015; -. DR EnsemblBacteria; ABX12911; ABX12911; Nmar_1015. DR KEGG; nmr:Nmar_1015; -. DR eggNOG; arCOG10350; Archaea. DR eggNOG; ENOG41122U8; LUCA. DR BioCyc; NMAR436308:GI3J-1043-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR025485; DUF4377. DR InterPro; IPR002350; Kazal_dom. DR Pfam; PF14302; DUF4377; 1. DR Pfam; PF00050; Kazal_1; 1. DR SMART; SM00280; KAZAL; 1. DR PROSITE; PS51465; KAZAL_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 291 340 Kazal-like. FT {ECO:0000259|PROSITE:PS51465}. SQ SEQUENCE 343 AA; 38113 MW; E4CFE4CB4C629163 CRC64; MKLIIAISLF LLGTFAISNS FADETISENY SSINQQELKV MVENWMNNPD EDDTRQRLEI MKAYYAFEET GNQLSHDQEG LVLMNQIRKM VSLQIPVEEL DELRKQVRIE LGLEVPYETK IFHVDSSLVD CVGVGPMKCM QIREDPNSNW QNFYDSIQGF DYAEGKSYKI SVKVTDVESP PADASSKKYE LIEILDQKSF AKHIPYKGVC APGFVSLGEI CVLNDRCGPG IYPGKVCVMD GVKQPYLRPS QQGDAGISSA DVICAEELNL IFKSHDGSPA CVTSETAKNL EQRGWQIPLP VFACTLEYAP VCGVDGKTYG NKCAIASSHV TIKHVGECTN DIP // ID A9A2J2_NITMS Unreviewed; 275 AA. AC A9A2J2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABX13231.1}; GN OrderedLocusNames=Nmar_1335 {ECO:0000313|EMBL:ABX13231.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13231.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13231.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13231.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13231.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2J2; -. DR STRING; 436308.Nmar_1335; -. DR EnsemblBacteria; ABX13231; ABX13231; Nmar_1335. DR KEGG; nmr:Nmar_1335; -. DR eggNOG; arCOG01568; Archaea. DR eggNOG; COG0668; LUCA. DR HOGENOM; HOG000110051; -. DR OMA; NATRGRM; -. DR BioCyc; NMAR436308:GI3J-1369-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR011066; MscC_channel_C. DR InterPro; IPR006685; MscS_channel. DR InterPro; IPR011014; MscS_channel_TM-2. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. DR SUPFAM; SSF82689; SSF82689; 1. DR SUPFAM; SSF82861; SSF82861; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 117 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 275 AA; 30273 MW; 4B748296EE0A6FEE CRC64; MVLEFLDQYS FDILGNTIGL GLVATSLVFL LAGFTIASIS KSVFTKKFAS KLPEHTSKNI GKLLYYGIIL LSFAGVMTST GIDLSGLLVA GGIFGVVIGF ATQSVVSNLI SGIFLMIEKP LKHGDTIEIP DMDVLGTVLD ITMFSTMVRK FDGTTMRIPN DKVFTSRIRG FSSTNARRTS VSVGISYSAN TKKAISKLKQ TLNEKMPYIL AKPEPEIHVT ELADSSVNLQ VMVWHHRDHW GKVYPELCEV VKTTLDENGI EIPFPQRVVE IHNKN // ID A9A2G6_NITMS Unreviewed; 705 AA. AC A9A2G6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 46. DE SubName: Full=CoA-binding domain protein {ECO:0000313|EMBL:ABX13205.1}; GN OrderedLocusNames=Nmar_1309 {ECO:0000313|EMBL:ABX13205.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13205.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13205.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13205.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13205.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G6; -. DR STRING; 436308.Nmar_1309; -. DR EnsemblBacteria; ABX13205; ABX13205; Nmar_1309. DR KEGG; nmr:Nmar_1309; -. DR eggNOG; arCOG01338; Archaea. DR eggNOG; arCOG01340; Archaea. DR eggNOG; COG1042; LUCA. DR HOGENOM; HOG000225732; -. DR KO; K18594; -. DR OMA; DEADMIW; -. DR BioCyc; NMAR436308:GI3J-1342-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0048037; F:cofactor binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.261; -; 2. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR003781; CoA-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR032875; Succ_CoA_lig_flav_dom. DR InterPro; IPR016102; Succinyl-CoA_synth-like. DR Pfam; PF13380; CoA_binding_2; 1. DR Pfam; PF13607; Succ_CoA_lig; 1. DR SMART; SM00881; CoA_binding; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF52210; SSF52210; 2. DR PROSITE; PS50975; ATP_GRASP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 25 61 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 705 AA; 76129 MW; 2B8C043794C85FAC CRC64; MAAVKKIFDE IIETDHKVIT EESSKSILKN YGVKVPPYAL VTSAEEAAKE AKKIGFPLVM KVVSPQILHK TDVGGVKVGL DNVADVKKTF TDMYGRLSKK KGVNVKGILL EKMVPKGVEL IVGIQNDSQF GPIIMVGMGG IMTEVMKDVA FRMLPITTSD AKSMLNELKG SKLLKGFRGS EPIDTNLVAK MLVNIGKLGV ENADYINSID FNPVIVYPKS HYVVDAKIIL NKEKKKNSIS KAKPSITDME TFFTPKSVAL VGASASPGKI GNSILDSLVN YDFKGKVYPI NPKADKIFGQ KCYPSVADIP GKVDLVVVSV DLSMTPPVLE DCAKKGVHSV VIVSGGGKEL GGERAAYEAE VARLSKKHKI RIIGPNCIGM FNAANRLDCA FQGQERMVRS KLGPVAFFSQ SGTMGISMLE SADTFGLSKM ISFGNRSDVD EADMIWYAAN DPQTKVIGLY VEGFGDGRKF INVAKRVMKE KKKPIVIWKS GRTAAGAKQA ASHTGSLGGS NAIIMGAFKQ AGIISVDSYQ ELAGVLKALA WQPAAKGNKV AMTSNGAGPM IGGIDQLEKF GLAIGKLSPK LLKKMKSRFP PAVPIHNGNP ADVGGGATAD DYQFVIQQFM DEKNIDIAMP WFVFQDDPLE ETIVDHLAGF QKKAKKPLLC GGNGGPYTEK MIKLIEKHNV PVYQDLRTWV AAASALHQWG KISKK // ID A9A544_NITMS Unreviewed; 384 AA. AC A9A544; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11953.1}; GN OrderedLocusNames=Nmar_0053 {ECO:0000313|EMBL:ABX11953.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11953.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11953.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11953.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11953.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0053; -. DR EnsemblBacteria; ABX11953; ABX11953; Nmar_0053. DR KEGG; nmr:Nmar_0053; -. DR eggNOG; arCOG04278; Archaea. DR eggNOG; COG1679; LUCA. DR HOGENOM; HOG000149415; -. DR KO; K09123; -. DR OMA; LIGCPHA; -. DR BioCyc; NMAR436308:GI3J-53-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007506; DUF521. DR Pfam; PF04412; DUF521; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 380 DUF521. {ECO:0000259|Pfam:PF04412}. SQ SEQUENCE 384 AA; 41978 MW; 64F0B8C0AA34FC25 CRC64; MELTREEESA LKGEQGEIMQ MAYRILVATG EATDAEKLVP IEWTHLSGVN YNTIGDAGEE FLSSISKDAR VKVKTTLNPM GFDIDNVSNY GLDENFISKQ LSIRNSYEIM GVIPSFSCIP YEIFEIPKDG TQVAFAESNA AIHANSYDNL KTNKESAFSA LASALTGKSP YSSLRKEDSP NVTIRMKVND PNELTYGMLG FFAGKVGDIS VNISGLGEMD NRQCKAMCGG MGTSGTCAKF IFGEGESDAE KIDFDEKAMQ NVYDELNTSE KGDIITLGSP QLGLEEISEL AGKLKGRTFE KRCMIFTPRT VKEQANKIGY TNELERAGCE ILSDCCTCLT PLINKENVDA VTTNSIKGAF YLKNSNGVGV NLKSLSQIIE DETR // ID A9A119_NITMS Unreviewed; 213 AA. AC A9A119; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Precorrin-8X methylmutase CbiC/CobH {ECO:0000313|EMBL:ABX11980.1}; GN OrderedLocusNames=Nmar_0080 {ECO:0000313|EMBL:ABX11980.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11980.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11980.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11980.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11980.1; -; Genomic_DNA. DR ProteinModelPortal; A9A119; -. DR STRING; 436308.Nmar_0080; -. DR EnsemblBacteria; ABX11980; ABX11980; Nmar_0080. DR KEGG; nmr:Nmar_0080; -. DR eggNOG; arCOG02247; Archaea. DR eggNOG; COG2082; LUCA. DR HOGENOM; HOG000290183; -. DR KO; K06042; -. DR OMA; GLQFSEG; -. DR BioCyc; NMAR436308:GI3J-81-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016993; F:precorrin-8X methylmutase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.10230; -; 1. DR InterPro; IPR003722; Cbl_synth_CobH/CbiC. DR Pfam; PF02570; CbiC; 1. DR SUPFAM; SSF63965; SSF63965; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 205 CbiC. {ECO:0000259|Pfam:PF02570}. SQ SEQUENCE 213 AA; 23069 MW; 63BBFB6EDBF5290F CRC64; MQTEKGQSIE DASMQMIEDE IGSHPYNEKE WPIVRRIIHS TADFDFADKN KIIFHKEAIE SGMKALKNGC SIVVDVNGVI GGLNKQNPKD FGNDIVCNIS KPEIMELAKK EGKTRSQVSM RAAKSDIDEG IVAIGNAPTA LQEVIKMVKE GIVKPALIIG IPVGFICAAE SKEELSRLEE APFITNLGRK GGSSSASAII NAIFKLIRAE SAS // ID A9A2N3_NITMS Unreviewed; 419 AA. AC A9A2N3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13272.1}; GN OrderedLocusNames=Nmar_1376 {ECO:0000313|EMBL:ABX13272.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13272.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13272.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13272.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13272.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1376; -. DR EnsemblBacteria; ABX13272; ABX13272; Nmar_1376. DR KEGG; nmr:Nmar_1376; -. DR BioCyc; NMAR436308:GI3J-1410-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 419 AA; 48696 MW; 63B79DFED371B5AD CRC64; MTASKKQVVF EKISEVLSEY ELTGITKNEL VRILQQEGIA SRMTFYEYFK EMADPKKANI IQMRIPKGKI NAVCFPTPEN QAIVKLKKKF KSICNLLGLI KKYPELGDCF IPLPRLKGVY NSKKIPPDTG FAYNTSLYSE IIHSEKTSFG ESRSYITLRS HRARHDILKE LSVFLTHYLN SPKRKYSKQI KEECVKILTP TFLQALKILS DDYVDTVNVS KDLKKTIQST APKDSAVFIG LVRAPIMPQV EVEFLKILGR YYYTISKQFS KNMKMDSCKE QKIISQVLRD FYCVEEDSNE KLDSQDIKRI FQLNNNLVTN RGKETEIKNE YGFDENSLAI KLVKTFSKDE EDTDDSLHIK IYYTKLFLSL GIFTKKEQQI IEYDLKHDEK VFKSKEWDDP KEGREVLEAL FPSEVSKYE // ID A9A5U1_NITMS Unreviewed; 124 AA. AC A9A5U1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE SubName: Full=Aminoacyl-tRNA hydrolase {ECO:0000313|EMBL:ABX13096.1}; DE EC=3.1.1.29 {ECO:0000313|EMBL:ABX13096.1}; GN OrderedLocusNames=Nmar_1200 {ECO:0000313|EMBL:ABX13096.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13096.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13096.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13096.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13096.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5U1; -. DR STRING; 436308.Nmar_1200; -. DR EnsemblBacteria; ABX13096; ABX13096; Nmar_1200. DR KEGG; nmr:Nmar_1200; -. DR eggNOG; arCOG04228; Archaea. DR eggNOG; COG1990; LUCA. DR HOGENOM; HOG000227349; -. DR KO; K04794; -. DR OMA; QVAHGAV; -. DR BioCyc; NMAR436308:GI3J-1233-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004045; F:aminoacyl-tRNA hydrolase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.1490.10; -; 1. DR InterPro; IPR023476; Pep_tRNA_hydro_II_dom. DR InterPro; IPR002833; PTH2. DR Pfam; PF01981; PTH2; 1. DR SUPFAM; SSF102462; SSF102462; 1. DR TIGRFAMs; TIGR00283; arch_pth2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13096.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 124 AA; 13564 MW; E668843170940EC6 CRC64; MPVFDNSMGD IKQVIVVRTD LEMGKGKIAA QVGHACVLGA EHVRKSHPEW YDQWWGGQEK VVVKVSGIKD LQEVKKHAID LNLPWSEVTD AGHTQIAPGT TTCISIGPAP ENLIDRVTGD LKLL // ID A9A1Z9_NITMS Unreviewed; 256 AA. AC A9A1Z9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 60. DE SubName: Full=FeS assembly ATPase SufC {ECO:0000313|EMBL:ABX12412.1}; GN OrderedLocusNames=Nmar_0516 {ECO:0000313|EMBL:ABX12412.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12412.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12412.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12412.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12412.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Z9; -. DR STRING; 436308.Nmar_0516; -. DR EnsemblBacteria; ABX12412; ABX12412; Nmar_0516. DR KEGG; nmr:Nmar_0516; -. DR eggNOG; arCOG04236; Archaea. DR eggNOG; COG0396; LUCA. DR KO; K09013; -. DR OMA; GMIVITH; -. DR BioCyc; NMAR436308:GI3J-537-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR010230; FeS-cluster_ATPase_SufC. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01978; sufC; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 253 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 256 AA; 28232 MW; 6C32992331A22007 CRC64; MAVLEIKDLH VTREGKEILK GVNLKTGPGE VHAIMGPNGS GKSTLAYTLL AHPKYEVTQG DILLDGESIL ELTADERAKK GLFLGFQYPT EVSGVGFSHF LRTAYNSLSK ALEGDDREVF ITVREFQKYL KENLEKVGLK EEFLSRYLNE GFSGGEKKRA EVLQMAVLKP KISILDEPDS GLDIDAVQAV AKAISQVSGK DATVIVITHY ARILKFLDKL DYVHVFARGQ VLKTGDASLA DKLESEGYDW VLEQTA // ID A9A4J0_NITMS Unreviewed; 566 AA. AC A9A4J0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 67. DE RecName: Full=Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; DE EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591}; GN OrderedLocusNames=Nmar_1072 {ECO:0000313|EMBL:ABX12968.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12968.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12968.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12968.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: 2 pyruvate = 2-acetolactate + CO(2). CC {ECO:0000256|RuleBase:RU003591}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|RuleBase:RU003591}; CC Note=Binds 1 Mg(2+) ion per subunit. CC {ECO:0000256|RuleBase:RU003591}; CC -!- COFACTOR: CC Name=thiamine diphosphate; Xref=ChEBI:CHEBI:58937; CC Evidence={ECO:0000256|RuleBase:RU003591}; CC Note=Binds 1 thiamine pyrophosphate per subunit. CC {ECO:0000256|RuleBase:RU003591}; CC -!- PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L- CC isoleucine from 2-oxobutanoate: step 1/4. CC {ECO:0000256|RuleBase:RU003591}. CC -!- PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine CC from pyruvate: step 1/4. {ECO:0000256|RuleBase:RU003591}. CC -!- SIMILARITY: Belongs to the TPP enzyme family. CC {ECO:0000256|RuleBase:RU362132}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12968.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4J0; -. DR STRING; 436308.Nmar_1072; -. DR EnsemblBacteria; ABX12968; ABX12968; Nmar_1072. DR KEGG; nmr:Nmar_1072; -. DR eggNOG; arCOG01998; Archaea. DR eggNOG; COG0028; LUCA. DR HOGENOM; HOG000258448; -. DR KO; K01652; -. DR OMA; MVWPMVP; -. DR BioCyc; NMAR436308:GI3J-1103-MONOMER; -. DR UniPathway; UPA00047; UER00055. DR UniPathway; UPA00049; UER00059. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003984; F:acetolactate synthase activity; IEA:UniProtKB-EC. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0009099; P:valine biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.1220; -; 1. DR Gene3D; 3.40.50.970; -; 2. DR InterPro; IPR012846; Acetolactate_synth_lsu. DR InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR012000; Thiamin_PyroP_enz_cen_dom. DR InterPro; IPR012001; Thiamin_PyroP_enz_TPP-bd_dom. DR InterPro; IPR000399; TPP-bd_CS. DR InterPro; IPR011766; TPP_enzyme-bd_C. DR Pfam; PF02775; TPP_enzyme_C; 1. DR Pfam; PF00205; TPP_enzyme_M; 1. DR Pfam; PF02776; TPP_enzyme_N; 1. DR SUPFAM; SSF52467; SSF52467; 1. DR SUPFAM; SSF52518; SSF52518; 2. DR TIGRFAMs; TIGR00118; acolac_lg; 1. DR PROSITE; PS00187; TPP_ENZYMES; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|RuleBase:RU003591}; KW Branched-chain amino acid biosynthesis KW {ECO:0000256|RuleBase:RU003591}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Magnesium {ECO:0000256|RuleBase:RU003591}; KW Metal-binding {ECO:0000256|RuleBase:RU003591}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Thiamine pyrophosphate {ECO:0000256|RuleBase:RU362132}; KW Transferase {ECO:0000256|RuleBase:RU003591}. FT DOMAIN 9 173 TPP_enzyme_N. {ECO:0000259|Pfam:PF02776}. FT DOMAIN 196 328 TPP_enzyme_M. {ECO:0000259|Pfam:PF00205}. FT DOMAIN 393 541 TPP_enzyme_C. {ECO:0000259|Pfam:PF02775}. SQ SEQUENCE 566 AA; 61427 MW; 8F33BCC7D41975F3 CRC64; MSDMENMIGA KALMTAMEKE GVKEVFGLPG GANLPMYDEF ARCDIRHILA RHEQSAAHMA DGFGRVSRKP GVCFATSGPG ATNILTGIAT AQADSAPMVA VTGQVPTPMI GKDAFQESDI IGMANPVVKY AFQPRHASEI PEVVKKGFFI AETGRPGPVL IDIPKDVQQN EAEMVFPDEF KIQGYHPWAD PDIVAVEKAI DMLLHAQKPV ILAGGGTIIS SAFAELQAVA EALMLPVVTT FKGKGAFPEN HPLSLGPIGM HGHAEANKIM TEADCVLAIG TRFSDRSVGT FEEFEKNLKI IHMDVDPAEI GKNQTAQLAV VGDVQMNLRI MVKLLLQKAI KKTDETPWVK HVKETKAYWQ ENLKLHPGEM GAAKILRKLR EILPKESIIT TEVGQHQMWA SLFYDVIQPG TFFSSTGLGT MGWGFPAAIG AKVAKPDVPV VDIAGDGSFA MTENSLATAV LEDIPVIVFV MNNFTLGMVA QWQRTFYERR MIGVDQGKWC PDYVKLAESY GAQGIRAQSM DELDKAIKDA LSSDVATVID IPIDPEEDVL PFVAPGTSLK DMILPS // ID A9A5C5_NITMS Unreviewed; 221 AA. AC A9A5C5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=RNA polymerase insert {ECO:0000313|EMBL:ABX12324.1}; GN OrderedLocusNames=Nmar_0428 {ECO:0000313|EMBL:ABX12324.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12324.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12324.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12324.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12324.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C5; -. DR STRING; 436308.Nmar_0428; -. DR EnsemblBacteria; ABX12324; ABX12324; Nmar_0428. DR KEGG; nmr:Nmar_0428; -. DR eggNOG; arCOG04241; Archaea. DR eggNOG; COG0202; LUCA. DR HOGENOM; HOG000230844; -. DR KO; K03047; -. DR OMA; EHAKWNS; -. DR BioCyc; NMAR436308:GI3J-446-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR Gene3D; 2.170.120.12; -; 1. DR InterPro; IPR001514; DNA-dir_RNA_pol_30-40kDasu_CS. DR InterPro; IPR011262; DNA-dir_RNA_pol_insert. DR InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3. DR InterPro; IPR009025; RBP11-like_dimer. DR Pfam; PF01000; RNA_pol_A_bac; 1. DR Pfam; PF01193; RNA_pol_L; 1. DR SMART; SM00662; RPOLD; 1. DR SUPFAM; SSF55257; SSF55257; 2. DR SUPFAM; SSF56553; SSF56553; 1. DR PROSITE; PS00446; RNA_POL_D_30KD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 215 RPOLD. {ECO:0000259|SMART:SM00662}. SQ SEQUENCE 221 AA; 24314 MW; AE83D5E666D3C5E0 CRC64; MDFEDFHQDL SSLEVISKDN QKIALKLKGV PLQYANALRR VCLNGVPVFA VDTVDIIENS SVLPDEGLAH RLGLIPLKTD LSRFNEPSKC ECQSETGCSN CKVMLVLDSG DSDVTRTVLS NELSSEDDSI TPISDKIPIV ELAPGQRIKV ECYARLGRGT EHAKWNSANV SMLTETDKDD ERILTVESTG ALNPEQIILS GVEEVGHRLA EFKDTIDQIS E // ID A9A1V6_NITMS Unreviewed; 207 AA. AC A9A1V6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Phosphoglycerate mutase {ECO:0000313|EMBL:ABX12077.1}; GN OrderedLocusNames=Nmar_0181 {ECO:0000313|EMBL:ABX12077.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12077.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12077.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12077.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12077.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1V6; -. DR STRING; 436308.Nmar_0181; -. DR EnsemblBacteria; ABX12077; ABX12077; Nmar_0181. DR KEGG; nmr:Nmar_0181; -. DR eggNOG; arCOG01991; Archaea. DR eggNOG; COG0406; LUCA. DR HOGENOM; HOG000110853; -. DR KO; K15634; -. DR OMA; HNTAVNI; -. DR BioCyc; NMAR436308:GI3J-183-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.1240; -; 1. DR InterPro; IPR013078; His_Pase_superF_clade-1. DR InterPro; IPR029033; His_PPase_superfam. DR Pfam; PF00300; His_Phos_1; 1. DR SMART; SM00855; PGAM; 1. DR SUPFAM; SSF53254; SSF53254; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 207 AA; 23329 MW; 0AAEE1FCD2F01F2D CRC64; MGQIIFLRHG QAKNNTDRIL AGRTEGVPLT DVGEQQAQHT AELLEHMNIS AIYSSPIQRA KHTAEIVGKH NSIDVTIDDR LIELDMGKFT GMAYDEIFND HGNVFMKFYQ GDLEIAHNGV ETFDEVKKRV LGIVDHVIEN HPNQNVVLVT HMDPIKAMLS TVVDLSPTNL FELIIANASL NLFRENNRKF SISGLNVMHP TRFDQGW // ID A9A175_NITMS Unreviewed; 128 AA. AC A9A175; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX12361.1}; GN OrderedLocusNames=Nmar_0465 {ECO:0000313|EMBL:ABX12361.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12361.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12361.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12361.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12361.1; -; Genomic_DNA. DR ProteinModelPortal; A9A175; -. DR STRING; 436308.Nmar_0465; -. DR EnsemblBacteria; ABX12361; ABX12361; Nmar_0465. DR KEGG; nmr:Nmar_0465; -. DR eggNOG; arCOG02391; Archaea. DR eggNOG; COG0784; LUCA. DR HOGENOM; HOG000034820; -. DR KO; K03413; -. DR OMA; NHIREVD; -. DR BioCyc; NMAR436308:GI3J-484-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 118 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 128 AA; 14485 MW; ACF8608014934DAF CRC64; MKTAIVVDND HDIVEVFSDL LEMLEFDVIS KGYDGGDAIT MYEKFKPDVI FMDVHMEEMH GDQALKEIRT IDKDVKVVMV TGDMSKSMED TLEKYGASAI IHKPFDIKII NEIITELENA TSIVIQKA // ID A9A1U0_NITMS Unreviewed; 321 AA. AC A9A1U0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 43. DE SubName: Full=Glycosyl transferase family 2 {ECO:0000313|EMBL:ABX12061.1}; GN OrderedLocusNames=Nmar_0165 {ECO:0000313|EMBL:ABX12061.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12061.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12061.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12061.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12061.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U0; -. DR STRING; 436308.Nmar_0165; -. DR CAZy; GT2; Glycosyltransferase Family 2. DR EnsemblBacteria; ABX12061; ABX12061; Nmar_0165. DR KEGG; nmr:Nmar_0165; -. DR eggNOG; arCOG00894; Archaea. DR eggNOG; COG0463; LUCA. DR OMA; NINGRTH; -. DR BioCyc; NMAR436308:GI3J-166-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR001173; Glyco_trans_2-like. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00535; Glycos_transf_2; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12061.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 243 264 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 276 302 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 19 176 Glyco_trans_2-like. FT {ECO:0000259|Pfam:PF00535}. SQ SEQUENCE 321 AA; 35850 MW; 65F79AFA49E380F8 CRC64; MMNETMETKK NSMSDEIFVC IPSYNAESTI EEAIKQCKKF ATSVLVINDG SSDKTEEIAK KAGAEIITHK QNKGYGGSIK TGLSEALRRR AKVTITFDAD LQHDSNDLPK IIQPILTNKA DIVIGSRFLE DNDNVKPYRK FGIKLITRLV NSFSKNNIRD AESGLRAYNY ESLKKIVPSL ETQGMGMSAE ILLKAAVNQL KIIEIPRKEM YPDNVQTSSQ NPLKHGLTVV LTIIKLIIET KPLPAFGIPS LVFFFITGIS SYFVVEFYNE IGRLPVGLTI FTLSTLTIAF FLIMVATILY VLSRISAKLN FQLHNDLNSN N // ID A9A3P9_NITMS Unreviewed; 381 AA. AC A9A3P9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13311.1}; GN OrderedLocusNames=Nmar_1415 {ECO:0000313|EMBL:ABX13311.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13311.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13311.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13311.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13311.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1415; -. DR EnsemblBacteria; ABX13311; ABX13311; Nmar_1415. DR KEGG; nmr:Nmar_1415; -. DR eggNOG; arCOG04151; Archaea. DR eggNOG; COG2237; LUCA. DR HOGENOM; HOG000109170; -. DR KO; K08975; -. DR OMA; RSVEYSY; -. DR BioCyc; NMAR436308:GI3J-1450-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR007254; DUF373. DR Pfam; PF04123; DUF373; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 178 196 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 202 219 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 240 260 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 280 306 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 318 336 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 348 367 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 381 AA; 41223 MW; D48DA612B9D72DFA CRC64; MSQRSDKVEK DVNASTANKL LVICVDRDND VGEKAGIVTP VIGRDACIEA AQRLALEDPE DADSNSIFSA IKTYEDLVSK GYQVEVVTVA GVKDRGVQAD EKILSETRKV LDKFSANGAV IVSDGEDDES VIPVIQNVLP VVSVQRVVMK VSRSVEYSYA VFGKYLKMIA YDSRYSKFFL GVPGILLLIG GVASVFGITT EIFAVLVSIL GGAFLIRAFD IDRVWSSWSK PTPMGFIRMF TMVAGILLIL SSVPAGVASI DPELAEADTT FVAKITDQVI IGQFVAGVLP ILWTGLGAIF AGTLLSNWIG GVPRQISDIL RIIVLIALYP TIYQFTNIMI SDVSSFTLIP PLLGGLAATL VSATILFKKY RKHKDQEMVS D // ID A9A5J8_NITMS Unreviewed; 113 AA. AC A9A5J8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12709.1}; GN OrderedLocusNames=Nmar_0813 {ECO:0000313|EMBL:ABX12709.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12709.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12709.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12709.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12709.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12709; ABX12709; Nmar_0813. DR KEGG; nmr:Nmar_0813; -. DR eggNOG; arCOG08722; Archaea. DR eggNOG; ENOG41111BT; LUCA. DR HOGENOM; HOG000107701; -. DR OMA; NRWSAKD; -. DR BioCyc; NMAR436308:GI3J-840-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 113 AA; 13210 MW; 0A5933A125F9F827 CRC64; MAKPTVELPI SKKPTDAELK KLKDYFKEMP VDEILTGLKF AKNRWSAKDA GTLKVGRKSI IQKEVHSVTT EQAQWRLKNW KMMIANYRRR GYSYPTISRI KKILVQKSKK KSK // ID A9A383_NITMS Unreviewed; 1096 AA. AC A9A383; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12512.1}; GN OrderedLocusNames=Nmar_0616 {ECO:0000313|EMBL:ABX12512.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12512.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12512.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12512.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12512.1; -; Genomic_DNA. DR ProteinModelPortal; A9A383; -. DR STRING; 436308.Nmar_0616; -. DR EnsemblBacteria; ABX12512; ABX12512; Nmar_0616. DR KEGG; nmr:Nmar_0616; -. DR eggNOG; arCOG08231; Archaea. DR eggNOG; ENOG410YPXP; LUCA. DR HOGENOM; HOG000108246; -. DR OMA; EHTANAR; -. DR BioCyc; NMAR436308:GI3J-640-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.40.1260; -; 1. DR InterPro; IPR001322; Lamin_tail_dom. DR Pfam; PF00932; LTD; 1. DR SUPFAM; SSF74853; SSF74853; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 24 119 LTD. {ECO:0000259|Pfam:PF00932}. SQ SEQUENCE 1096 AA; 120274 MW; A40C3AB5F420DF1B CRC64; MNQTLHIVFF IFLLVGVIVP AYAQTAENVV INEVDINPPG DDSKSISEWV ELYNPTDSEI DLSGWQIAST TVLKKTMTIG SGTTIEPGQF LTFSYQSVWF TDINESVELR DENGIVIDKT PILSDIKNDF TSWQRIYDGY DLDNPDDWKF VTSTSGSTNG KLVQEQKQDE ISLSLSSDKS FYLFGETAVI EGSVSKAVFV EKPFFQPEVI TVKISGPNFD KTLTLYPDLN KNFKTTLGLQ KVLGINEGDY TINASYAGST VNTSFSVGYE ITEEQVQQDS FLNLNTDKTQ YIPGQMVSIT GTATDIVEFQ GMKFTVTNSE GTIVYNGNLF PVNGQFKTSI FLSTVNPVYG TYEIIGEYVD KSVITTFEVI EDAKETVPIS LWTNKDVYGT GEVVTITGRL NDVWVASLDL EIVQTKNLAL GTGSQLGGGN VLKILDVVRI DGDGKFKYSF TIPDVDTRLG DYKIKVSKDI GSAKKTVMVV KEPENFVPIT DPLIVTTNKL VYDFTLDKEL VIRGQIKNPV DRTSFETPTV LISFKDENGK PLSIIGVPEG VNQGAAGGTG SVTAKYQFTA IPESGGTFSV TADISRGIFS EGTYTITAQY LDLTSTTSFD IVDDLAGGGV VSLDKDVYGL GEQVVVSGII PTSDRSVTIS VTRPDGTKTT YGEAVDNQRF SWSWTTPVSE RYQTLKSDGE RGVTFSNFGI YKIKVAGDTY SKDLLFKVST DPENDSLSAT PLFITTDKSL YQAGDKLKVI GNVIPRDQGD EGLVVPDRVT IKVLDGTFPY KQIHEASVYP KQGGEFSSLF ELPATIFSEG MYTVKAIYST KQVTSTFSVA NDFTFGIDEP VSLLASTDKS EYYPGDTVII SGKPNKLIYL EAYDVSIIKK SDTEITCGSF ICGTHVGQVK SIRPSPSGSF THEFPIKNTL SSIGTYEVTI DADFETKHIR FNVVEEPLAP KLETVIEKEN RIPDKTISVS TPEKTVDDAT FAPRVVSGSL LTPIKDEASN VNLKVSSESG VCIIGPDADC LVSESTRKPG QIYDVVEVDG MSLNVRYSGP DVRLEKFSIL PESSESFLPD SDWNVEILKD EQVSRFYYKV TYKTIE // ID A9A480_NITMS Unreviewed; 165 AA. AC A9A480; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Putative signal-transduction protein with CBS domains {ECO:0000313|EMBL:ABX12569.1}; GN OrderedLocusNames=Nmar_0673 {ECO:0000313|EMBL:ABX12569.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12569.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12569.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12569.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12569.1; -; Genomic_DNA. DR ProteinModelPortal; A9A480; -. DR STRING; 436308.Nmar_0673; -. DR EnsemblBacteria; ABX12569; ABX12569; Nmar_0673. DR KEGG; nmr:Nmar_0673; -. DR eggNOG; ENOG4102TZJ; Archaea. DR eggNOG; ENOG4111SM0; LUCA. DR OMA; VDCLKEI; -. DR BioCyc; NMAR436308:GI3J-698-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 2. DR SMART; SM00116; CBS; 2. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 30 85 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 94 149 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 165 AA; 18794 MW; 9F8A23DF16AB0DBC CRC64; MIFRNDNLKS NHIVNKLKKY VENTFVNQIM SKNVLTVKVS ETLEEVAKKM KEENVGCVIV VDKIATLGIV TERDFVTKIV AERKTPHTKI FEVMSSPLIT IKSESTIWEA AEIMKEKSIH KLPVIEDEEI VGIITTTDIV RISSVGSDSQ MRKICDQILM RMKDD // ID A9A5P1_NITMS Unreviewed; 247 AA. AC A9A5P1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 44. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX13046.1}; GN OrderedLocusNames=Nmar_1150 {ECO:0000313|EMBL:ABX13046.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13046.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13046.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13046.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13046.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5P1; -. DR STRING; 436308.Nmar_1150; -. DR EnsemblBacteria; ABX13046; ABX13046; Nmar_1150. DR KEGG; nmr:Nmar_1150; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000106554; -. DR OMA; GKFWEMR; -. DR BioCyc; NMAR436308:GI3J-1182-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 2. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 67 243 Thioredoxin. {ECO:0000259|Pfam:PF13462}. SQ SEQUENCE 247 AA; 27965 MW; 6D817304F978A7C5 CRC64; MLVKTFVKNN LVLCVASVVL VVFFLGYLVG MEVGQDTVRK QELANLEQRL AELKDSKSNT PSQISKDNDP LLGDPDAPLS IVEFSNFQCK FCLRFYSDTL PLLKTQYIDT GKVNLIYRDF PIPKIYDNSM SAALASECAN EQGKFWEYHD ILFENQHTWR QNESDLSLLT FKQFANTLVL NQEKFDSCLD SGKYADEINS DVGDGRDYAV SGTPTFFVGN DKVGYSSLFG TQSFSDFQKI IDEKLEQ // ID A9A567_NITMS Unreviewed; 130 AA. AC A9A567; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12266.1}; GN OrderedLocusNames=Nmar_0370 {ECO:0000313|EMBL:ABX12266.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12266.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12266.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12266.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12266.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0370; -. DR EnsemblBacteria; ABX12266; ABX12266; Nmar_0370. DR KEGG; nmr:Nmar_0370; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR BioCyc; NMAR436308:GI3J-386-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 130 AA; 14868 MW; 9658238940E71473 CRC64; MMGEFSLDDV RKRMDNVLLD SEIRFCGLID PKGELIAGGF ASNIVPMLND KQRQHLYQEL AHRVANRQGF DADLGRVKYS ASRRENAVML SFPFGKYIVL VMANPGINID RFAWDILNKL GRDWSEFDSL // ID A9A1S5_NITMS Unreviewed; 329 AA. AC A9A1S5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Polysaccharide biosynthesis protein CapD {ECO:0000313|EMBL:ABX12046.1}; GN OrderedLocusNames=Nmar_0146 {ECO:0000313|EMBL:ABX12046.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12046.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12046.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12046.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12046.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1S5; -. DR SMR; A9A1S5; 1-280. DR STRING; 436308.Nmar_0146; -. DR EnsemblBacteria; ABX12046; ABX12046; Nmar_0146. DR KEGG; nmr:Nmar_0146; -. DR eggNOG; arCOG01375; Archaea. DR eggNOG; COG1086; LUCA. DR HOGENOM; HOG000257079; -. DR KO; K15894; -. DR OMA; ICIHAAA; -. DR BioCyc; NMAR436308:GI3J-149-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR003869; Polysac_CapD-like. DR Pfam; PF02719; Polysacc_synt_2; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 279 Polysacc_synt_2. FT {ECO:0000259|Pfam:PF02719}. SQ SEQUENCE 329 AA; 37113 MW; 2795915D2DA9F96E CRC64; MLENKTILIT GGTGSLGTAL TKRLLKSKVG TIRIFSRDEW KQTKMFEELD DSRLRFFIGD IRDKERLSRA VEGVDYVFHA AALKQVPIAE YNPFEAIKTN VYGTQNLVDV CLDNNVKKVV AIGTDKAASP ANTYGATKLL MEKIIISANF FKGIHKTSFV CVRYGNVLGS RGSVLPRFIE QISNKGVITL TDPKMTRFTI TMNGAIDLVL RALKNGNGGE LFVPRLKSYT LEELKNAIIE LSGKKVKIKK ISLRPGEKFH ETLISGDEIS QTYESKEDYI IFQQSIDKIS SLKKLKYKKT KLKSAYISNK NNFISKNQLK KMIREEGYF // ID A9A2T5_NITMS Unreviewed; 171 AA. AC A9A2T5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=NUDIX hydrolase {ECO:0000313|EMBL:ABX13612.1}; GN OrderedLocusNames=Nmar_1716 {ECO:0000313|EMBL:ABX13612.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13612.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13612.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13612.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13612.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2T5; -. DR STRING; 436308.Nmar_1716; -. DR EnsemblBacteria; ABX13612; ABX13612; Nmar_1716. DR KEGG; nmr:Nmar_1716; -. DR eggNOG; arCOG01073; Archaea. DR eggNOG; COG0494; LUCA. DR HOGENOM; HOG000045854; -. DR KO; K01515; -. DR OMA; ENPLECA; -. DR BioCyc; NMAR436308:GI3J-1761-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.79.10; -; 1. DR InterPro; IPR020084; NUDIX_hydrolase_CS. DR InterPro; IPR000086; NUDIX_hydrolase_dom. DR InterPro; IPR015797; NUDIX_hydrolase_dom-like. DR Pfam; PF00293; NUDIX; 1. DR SUPFAM; SSF55811; SSF55811; 1. DR PROSITE; PS51462; NUDIX; 1. DR PROSITE; PS00893; NUDIX_BOX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13612.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 32 160 Nudix hydrolase. FT {ECO:0000259|PROSITE:PS51462}. SQ SEQUENCE 171 AA; 19510 MW; A21EBB87E09012DC CRC64; MKKKKIYEGK ILGLSVYDGK IEGRKVKREV IEHRGAAAML AFDEDKKVIL VKQHRFPHGY VLEIPAGTLE KKEEPIKCAF RELEEETGYR AKKMTPLITY YPSIGYNSEI IHCFVASGLK KIADLKLDED EILSVEKVDM KKLLNMIKSG KIQDSKTICA VLTYAAKKKL Y // ID A9A566_NITMS Unreviewed; 321 AA. AC A9A566; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ABX12265.1}; GN OrderedLocusNames=Nmar_0369 {ECO:0000313|EMBL:ABX12265.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12265.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12265.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12265.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12265.1; -; Genomic_DNA. DR ProteinModelPortal; A9A566; -. DR STRING; 436308.Nmar_0369; -. DR EnsemblBacteria; ABX12265; ABX12265; Nmar_0369. DR KEGG; nmr:Nmar_0369; -. DR eggNOG; arCOG01459; Archaea. DR eggNOG; COG1063; LUCA. DR HOGENOM; HOG000294689; -. DR OMA; GDESHCP; -. DR BioCyc; NMAR436308:GI3J-385-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.180.10; -; 1. DR InterPro; IPR013154; ADH_N. DR InterPro; IPR002085; ADH_SF_Zn-type. DR InterPro; IPR011032; GroES-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR11695; PTHR11695; 1. DR Pfam; PF08240; ADH_N; 1. DR SUPFAM; SSF50129; SSF50129; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 28 127 ADH_N. {ECO:0000259|Pfam:PF08240}. SQ SEQUENCE 321 AA; 35088 MW; C663A739F0216CA4 CRC64; MKNNHMKATS FDGNKMIYDE NYPDPKPGES LVRVSLAGIC GTDLEILDGY MAYNGVLGHE FVGVVEKSKN SDLLGKRVVG EINAGCNRCD SCKKGLQRHC PNRTVLGILK RDGAFAEFLS LPEENLHVIP DSISDEQAVF VEPLAAAFEI KEQVSLNPDW KVAVVGDGRL AQMICQVLKL SCPNVTCFGR HETKLSHLEK FKIQTKIGII DSDLQSYDLV VEATGSNSGF ADTMKLVKPR GTVILKSTIA SRENLDLTPT VVNEITLIGS RCGLFKPAID ALATGIVSVD SMVYSTFPLE KFSDAIQHAK KPDTLKVFLK P // ID A9A3V7_NITMS Unreviewed; 213 AA. AC A9A3V7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 39. DE SubName: Full=Cyclase family protein {ECO:0000313|EMBL:ABX13657.1}; GN OrderedLocusNames=Nmar_1761 {ECO:0000313|EMBL:ABX13657.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13657.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13657.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13657.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13657.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V7; -. DR STRING; 436308.Nmar_1761; -. DR EnsemblBacteria; ABX13657; ABX13657; Nmar_1761. DR KEGG; nmr:Nmar_1761; -. DR eggNOG; arCOG02462; Archaea. DR eggNOG; COG1878; LUCA. DR HOGENOM; HOG000219455; -. DR OMA; LERNIAG; -. DR BioCyc; NMAR436308:GI3J-1808-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004061; F:arylformamidase activity; IEA:InterPro. DR GO; GO:0019441; P:tryptophan catabolic process to kynurenine; IEA:InterPro. DR InterPro; IPR007325; KFase. DR Pfam; PF04199; Cyclase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 213 AA; 23693 MW; 43A344E04803564E CRC64; MKPIDLTLTI SKSIPSFPGS PTPQFISWSH LKEDGYNLEL LFLSSHTGTH LDAPFHFVKN GIKIDQIPLG RLMGKAILIK IKKSKNSPIT KSDIVHFEKE NGNIPDKSSI FFFTGWQKNV KKDNYFTENP GLALSAATYL AQKNTNLVGI DSPSIDLGKD ESFSVHHILS KKNILIVENL ANLNKIKSRE FDFTILPLKL KDATGSPVRA VAH // ID A9A5S2_NITMS Unreviewed; 265 AA. AC A9A5S2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX13077.1}; GN OrderedLocusNames=Nmar_1181 {ECO:0000313|EMBL:ABX13077.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13077.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13077.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13077.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13077.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5S2; -. DR STRING; 436308.Nmar_1181; -. DR EnsemblBacteria; ABX13077; ABX13077; Nmar_1181. DR KEGG; nmr:Nmar_1181; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000106554; -. DR OMA; AFSDFTC; -. DR BioCyc; NMAR436308:GI3J-1214-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 42 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 60 264 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 265 AA; 29521 MW; 2F4ED18B145FB0C9 CRC64; MSFDDNEINQ NEHTQNKSKS NGLIIGLIVA VGVAAFFAGM YFSNANSDQI SQEDLDDAIA KLELKMLQNR LPTNQPSEPV KISADDDPII GNPDAPITII EFSDFQCPFC ARFHVQTLPL LLEEYIDQGK VKLVFRDFPI QSIHPNALPA SVAAECANEQ GQFKAMHDML FDNQGQWSNQ ETVDALSMFS QYATQIQLDQ ETFDSCLTSG KYIEEIRKDL DDGRSYDVTG TPGFFVGNDE IGYVELKGAQ PFESFKKVID AQLEA // ID A9A3K5_NITMS Unreviewed; 125 AA. AC A9A3K5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12937.1}; GN OrderedLocusNames=Nmar_1041 {ECO:0000313|EMBL:ABX12937.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12937.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12937.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12937.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12937.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1041; -. DR EnsemblBacteria; ABX12937; ABX12937; Nmar_1041. DR KEGG; nmr:Nmar_1041; -. DR eggNOG; arCOG08726; Archaea. DR eggNOG; ENOG41110B7; LUCA. DR HOGENOM; HOG000107825; -. DR OMA; IRIYGKW; -. DR BioCyc; NMAR436308:GI3J-1072-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 125 AA; 14125 MW; 80F19C270F7AC5B5 CRC64; MQDPNPMPWG ALDRYQAHFI VRKDTGRNVG NFVAKTQLKT RGHFAAKTVE SVSWNGTGAL AEKLNHDSEL NEMIAQQSVK DATIYVEPTE NAVRIRSKWD NHLAFGITKE LFDIYDRIAG HIKSV // ID A9A5B4_NITMS Unreviewed; 123 AA. AC A9A5B4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12313.1}; GN OrderedLocusNames=Nmar_0417 {ECO:0000313|EMBL:ABX12313.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12313.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12313.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12313.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12313.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12313; ABX12313; Nmar_0417. DR KEGG; nmr:Nmar_0417; -. DR eggNOG; arCOG10524; Archaea. DR eggNOG; ENOG41111MK; LUCA. DR OMA; KLEMHEY; -. DR BioCyc; NMAR436308:GI3J-435-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 123 AA; 13364 MW; 23D6C95073CC1A44 CRC64; MTLKLKLDGR SVILDMKKEY VVRSIDAAPD GAPYVIVSLS SVKDLKEGTQ NPQSPFGSPK VMGFSNMNDM MKDLNKMLSG MGGMGMQGGI TQLKLEMHEY KDMGLSVGDK VFLELSKAES LGV // ID A9A2M5_NITMS Unreviewed; 272 AA. AC A9A2M5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13264.1}; GN OrderedLocusNames=Nmar_1368 {ECO:0000313|EMBL:ABX13264.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13264.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13264.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13264.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13264.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1368; -. DR EnsemblBacteria; ABX13264; ABX13264; Nmar_1368. DR KEGG; nmr:Nmar_1368; -. DR eggNOG; ENOG4102TJ7; Archaea. DR eggNOG; COG2912; LUCA. DR HOGENOM; HOG000263801; -. DR OMA; DGEMWLI; -. DR BioCyc; NMAR436308:GI3J-1402-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR032698; SirB1_N. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF13371; TPR_9; 1. DR Pfam; PF13369; Transglut_core2; 1. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 2. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 188 255 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 272 AA; 31727 MW; E43DBE6B587F0944 CRC64; MEKEFDPFVA EWFSFVKNPN FNLVEKCLKF AQILEYPDLD IEKHIEKITK IGMSLKESIS DVKNPTYLIS MLNEHLFENL GYSGDDDDYY NPKNNFLNEV IDKKTGLPIT ISILYAEVAK FIGLDLKIVG FPSHILVKYN EEMILDPFYD GRLLDIDDLQ EILDTNYGGE IEFKPEFLDE ITHEQILVRL TRNLKNSYVQ SFVYDKALRC VNMVLAIEPE SPDDIRDKGI LEERLLNYDS ALKYLNKYLE INPNAEDVDF ILELIRSIKT KN // ID A9A4P9_NITMS Unreviewed; 351 AA. AC A9A4P9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=Multicopper oxidase type 3 {ECO:0000313|EMBL:ABX13027.1}; GN OrderedLocusNames=Nmar_1131 {ECO:0000313|EMBL:ABX13027.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13027.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13027.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13027.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13027.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4P9; -. DR STRING; 436308.Nmar_1131; -. DR EnsemblBacteria; ABX13027; ABX13027; Nmar_1131. DR KEGG; nmr:Nmar_1131; -. DR eggNOG; arCOG03914; Archaea. DR eggNOG; COG2132; LUCA. DR HOGENOM; HOG000096103; -. DR OMA; NGEKEHT; -. DR BioCyc; NMAR436308:GI3J-1163-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0050421; F:nitrite reductase (NO-forming) activity; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 2. DR InterPro; IPR011706; Cu-oxidase_2. DR InterPro; IPR011707; Cu-oxidase_3. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR001287; NO2-reductase_Cu. DR Pfam; PF07731; Cu-oxidase_2; 1. DR Pfam; PF07732; Cu-oxidase_3; 1. DR PRINTS; PR00695; CUNO2RDTASE. DR SUPFAM; SSF49503; SSF49503; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 110 208 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07732}. FT DOMAIN 229 340 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07731}. SQ SEQUENCE 351 AA; 39734 MW; 3270F6CCC89D93CD CRC64; MIKSRSGIML ILLIAVGTIS VLFTAFPEGI DAQQEENTFV THTGAVVKTT GEVLDPLYTS ATVEFDPMEY LRDFNYGRIL QLDDGTTLRE YTIIANDDEI MEVSPGIFYN VWTFNGTVPG PTIRATEGDV VRIKFINNGE KEHTMHFHGI HPAGMDGVFE PVGGNGGQFV YEFEAGPVGV HPYHCHVMPL EEHIVHGLYG VFIVDPKEER PPADEMVMVL NGLDTDFDTE NNFYAANTIP FYYQHHPIQI NANELIRVYV VNMVEFDPIN NLHLHGNLYK YYPTGTDIVP SFYTDMITLS QTERGIMEFE YEYPGKYLFH AHKVEFSEKG WVGIFMVNED ENNVDSEGYG T // ID A9A1X0_NITMS Unreviewed; 93 AA. AC A9A1X0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12091.1}; GN OrderedLocusNames=Nmar_0195 {ECO:0000313|EMBL:ABX12091.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12091.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12091.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12091.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12091.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0195; -. DR EnsemblBacteria; ABX12091; ABX12091; Nmar_0195. DR KEGG; nmr:Nmar_0195; -. DR eggNOG; arCOG08822; Archaea. DR eggNOG; ENOG41110FG; LUCA. DR HOGENOM; HOG000110809; -. DR OMA; SAWAGND; -. DR BioCyc; NMAR436308:GI3J-199-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 93 AA; 10342 MW; A8382D67A39ADF17 CRC64; MIIGIIIWFI LAKRRIRTGR GTRIIEVDDN DSAWAGNDFK KLQDARKKAA SDKYITVGRG TGKIKFGDIE STPTKSTKGM WVSSGRGTGK RKL // ID A9A321_NITMS Unreviewed; 281 AA. AC A9A321; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ABX12149.1}; GN OrderedLocusNames=Nmar_0253 {ECO:0000313|EMBL:ABX12149.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12149.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12149.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12149.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12149.1; -; Genomic_DNA. DR ProteinModelPortal; A9A321; -. DR STRING; 436308.Nmar_0253; -. DR EnsemblBacteria; ABX12149; ABX12149; Nmar_0253. DR KEGG; nmr:Nmar_0253; -. DR eggNOG; arCOG02200; Archaea. DR eggNOG; COG1018; LUCA. DR HOGENOM; HOG000109663; -. DR KO; K00528; -. DR OMA; PQEWFNR; -. DR BioCyc; NMAR436308:GI3J-260-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR017927; Fd_Rdtase_FAD-bd. DR InterPro; IPR001709; Flavoprot_Pyr_Nucl_cyt_Rdtase. DR InterPro; IPR008333; OxRdtase_FAD-bd_dom. DR InterPro; IPR001433; OxRdtase_FAD/NAD-bd. DR InterPro; IPR017938; Riboflavin_synthase-like_b-brl. DR Pfam; PF00970; FAD_binding_6; 1. DR Pfam; PF00175; NAD_binding_1; 1. DR PRINTS; PR00371; FPNCR. DR SUPFAM; SSF63380; SSF63380; 1. DR PROSITE; PS51384; FAD_FR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 110 FAD-binding FR-type. FT {ECO:0000259|PROSITE:PS51384}. SQ SEQUENCE 281 AA; 32036 MW; 1AAED5978E7BA635 CRC64; MVVDNKATIT YVQLLKEDLV IIRLVPKEGP VPEYKAGQFI TLGLPNPVEG GKIVRRAYSI ASHPENREYV ELVIRWVRKP LPGRLTTQLF NAKEGDEILW LKPTGRALLI NEELPNGEKD NRRIICIGGG TGLAPFVSFA QHLHDSGDKR EIVVLHGASY VDELSYKDLL TELENESIRR GKDEWNFKYR AAISRPQEWF NRSWAGQVGR VETFLRPRDN GMSPLEELIG DKITKENTIF YVCGWQGTID GVMDFLKPKG FVTEHDKRED GSFEVKYESY G // ID A9A1S9_NITMS Unreviewed; 327 AA. AC A9A1S9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 51. DE RecName: Full=GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; DE EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955}; DE AltName: Full=GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; GN Name=gmd {ECO:0000256|HAMAP-Rule:MF_00955}; GN OrderedLocusNames=Nmar_0150 {ECO:0000313|EMBL:ABX12050.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12050.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12050.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12050.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of GDP-D-mannose to GDP-4- CC dehydro-6-deoxy-D-mannose. {ECO:0000256|HAMAP-Rule:MF_00955}. CC -!- CATALYTIC ACTIVITY: GDP-alpha-D-mannose = GDP-4-dehydro-alpha-D- CC rhamnose + H(2)O. {ECO:0000256|HAMAP-Rule:MF_00955}. CC -!- COFACTOR: CC Name=NADP(+); Xref=ChEBI:CHEBI:58349; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00955}; CC -!- SIMILARITY: Belongs to the NAD(P)-dependent epimerase/dehydratase CC family. GDP-mannose 4,6-dehydratase subfamily. {ECO:0000256|HAMAP- CC Rule:MF_00955}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12050.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1S9; -. DR SMR; A9A1S9; 2-317. DR STRING; 436308.Nmar_0150; -. DR EnsemblBacteria; ABX12050; ABX12050; Nmar_0150. DR KEGG; nmr:Nmar_0150; -. DR eggNOG; arCOG01373; Archaea. DR eggNOG; COG1089; LUCA. DR HOGENOM; HOG000168003; -. DR KO; K01711; -. DR OMA; SDMMKAD; -. DR BioCyc; NMAR436308:GI3J-153-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008446; F:GDP-mannose 4,6-dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070401; F:NADP+ binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019673; P:GDP-mannose metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00955; GDP_Man_dehydratase; 1. DR InterPro; IPR006368; GDP_Man_deHydtase. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF16363; GDP_Man_Dehyd; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00955}; KW NADP {ECO:0000256|HAMAP-Rule:MF_00955}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 311 NAD(P)-bd_dom. FT {ECO:0000259|Pfam:PF16363}. FT NP_BIND 8 13 NADP. {ECO:0000256|HAMAP-Rule:MF_00955}. FT NP_BIND 58 59 NADP. {ECO:0000256|HAMAP-Rule:MF_00955}. FT NP_BIND 80 84 NADP. {ECO:0000256|HAMAP-Rule:MF_00955}. FT ACT_SITE 125 125 {ECO:0000256|HAMAP-Rule:MF_00955}. FT ACT_SITE 127 127 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00955}. FT ACT_SITE 148 148 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00955}. FT BINDING 152 152 NADP. {ECO:0000256|HAMAP-Rule:MF_00955}. FT BINDING 178 178 NADP. {ECO:0000256|HAMAP-Rule:MF_00955}. FT BINDING 183 183 NADP. {ECO:0000256|HAMAP-Rule:MF_00955}. SQ SEQUENCE 327 AA; 37327 MW; 71649E2844D7858C CRC64; MKNALIFGLT GQDGTYLADF LLKKGYNVFG TFRRTSHRCF ERLEEMEIFH KVTDIKADLS DYGSVQAAIK QSEPDEIYNL GAQSFVGASF QQPVLTSDIT GLGVLRVLEA IRENVPDAKF YQASSSEMYG NYPGIKNEES PFRPRSPYGA AKVFGHHMTN HYKEAYNIFA CCGILFNHES PLRGLEFVTR KITYALSKIK FNTLDKLHLG NINAKRDWGF AGDYVEAMWL MLQQKEPDNY VIATGKSHSI KEFLDIASEY AGLGDWHEFV EIDESLMRPT DIEDLVGDAS KARKNLNWEP KTSFKELVKK MMDHDIEYHK QHPSSQY // ID A9A364_NITMS Unreviewed; 136 AA. AC A9A364; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=tRNA-binding domain protein {ECO:0000313|EMBL:ABX12493.1}; GN OrderedLocusNames=Nmar_0597 {ECO:0000313|EMBL:ABX12493.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12493.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12493.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12493.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12493.1; -; Genomic_DNA. DR ProteinModelPortal; A9A364; -. DR STRING; 436308.Nmar_0597; -. DR EnsemblBacteria; ABX12493; ABX12493; Nmar_0597. DR KEGG; nmr:Nmar_0597; -. DR eggNOG; arCOG01136; Archaea. DR eggNOG; COG0073; LUCA. DR HOGENOM; HOG000269896; -. DR KO; K06878; -. DR OMA; ASCDEKN; -. DR BioCyc; NMAR436308:GI3J-620-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR002547; tRNA-bd_dom. DR Pfam; PF01588; tRNA_bind; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS50886; TRBD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 35 136 TRNA-binding. FT {ECO:0000259|PROSITE:PS50886}. SQ SEQUENCE 136 AA; 15257 MW; 5F5E320E22616D42 CRC64; MKLKLVVLIK KNYNNQNSFK RQSLCHFMSH VSYDDFAKLD IRVAKIIDTE PIEGKSRIIK GKIDLGNDDQ RDVIIGGAQY FQPEDIVGKT VIVLANLEPK KMAGVESNAM LLAADVDDKP FWLTVKEDVP LGSPIK // ID A9A5K2_NITMS Unreviewed; 369 AA. AC A9A5K2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=Redoxin domain protein {ECO:0000313|EMBL:ABX12713.1}; GN OrderedLocusNames=Nmar_0817 {ECO:0000313|EMBL:ABX12713.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12713.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12713.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12713.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12713.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5K2; -. DR STRING; 436308.Nmar_0817; -. DR EnsemblBacteria; ABX12713; ABX12713; Nmar_0817. DR KEGG; nmr:Nmar_0817; -. DR eggNOG; arCOG03562; Archaea. DR eggNOG; ENOG410XTIR; LUCA. DR HOGENOM; HOG000107679; -. DR OMA; WEYTCVN; -. DR BioCyc; NMAR436308:GI3J-844-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016209; F:antioxidant activity; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 2.60.120.260; -; 1. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR000866; AhpC/TSA. DR InterPro; IPR008979; Galactose-bd-like. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF00578; AhpC-TSA; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 30 196 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 369 AA; 41898 MW; 57071D7019613C92 CRC64; MKSEIKTALI LGIVIAVGIG ITSIVFSTIE NNIQTANNFD SANSASKIDK SGFKKAPDLV GIAHYLNTTP EELAQEIEGK VVLYDIWTYS CINCIRTLPY ITAWDDKYSD QGLLIVGVHS PEFEFEKVPE NVQMSIEKHG INYPVVMDND METWKAFENR YWPRKYIADH EGYIRYDHIG EGGYQETEKI IQQLIKERSD SLGIQMASAL SLVDIEEFEH TLFRTPELYF GYYFAQNRNQ LGSEEGFQPE KTVVYEESDK IELHKFYPIG TWKNHEDSME LISEEGEIKL LYNAKEVNIV TANNAELEIY LDGEALPVQY SGNDIISGNT LSVSEPGLYN IITNEESASH VLELKVKGKG FQIFTFTFG // ID A9A201_NITMS Unreviewed; 82 AA. AC A9A201; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12414.1}; GN OrderedLocusNames=Nmar_0518 {ECO:0000313|EMBL:ABX12414.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12414.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12414.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12414.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12414.1; -; Genomic_DNA. DR ProteinModelPortal; A9A201; -. DR STRING; 436308.Nmar_0518; -. DR EnsemblBacteria; ABX12414; ABX12414; Nmar_0518. DR KEGG; nmr:Nmar_0518; -. DR eggNOG; arCOG02466; Archaea. DR eggNOG; COG3277; LUCA. DR HOGENOM; HOG000108981; -. DR KO; K07569; -. DR OMA; VMELIGP; -. DR BioCyc; NMAR436308:GI3J-539-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR009000; Transl_B-barrel. DR SUPFAM; SSF50447; SSF50447; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 82 AA; 9219 MW; 275FD85E87B9564C CRC64; MHLAGSGRVI IQLSNKLVEG QILCDEKGTR VAKVMELIGP VRRPFASATP LTNNIKRYIG KSVFATEHSP DNSKKKFRRR KK // ID A9A2K3_NITMS Unreviewed; 167 AA. AC A9A2K3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=L-2,4-diaminobutyric acid acetyltransferase {ECO:0000313|EMBL:ABX13242.1}; GN OrderedLocusNames=Nmar_1346 {ECO:0000313|EMBL:ABX13242.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13242.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13242.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13242.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13242.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2K3; -. DR STRING; 436308.Nmar_1346; -. DR EnsemblBacteria; ABX13242; ABX13242; Nmar_1346. DR KEGG; nmr:Nmar_1346; -. DR eggNOG; ENOG4102TP7; Archaea. DR eggNOG; COG0454; LUCA. DR HOGENOM; HOG000078070; -. DR KO; K06718; -. DR OMA; VYCNLLQ; -. DR BioCyc; NMAR436308:GI3J-1380-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033816; F:diaminobutyrate acetyltransferase activity; IEA:InterPro. DR GO; GO:0008080; F:N-acetyltransferase activity; IEA:InterPro. DR GO; GO:0019491; P:ectoine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR012772; Ectoine_EctA. DR InterPro; IPR000182; GNAT_dom. DR Pfam; PF00583; Acetyltransf_1; 1. DR SUPFAM; SSF55729; SSF55729; 1. DR TIGRFAMs; TIGR02406; ectoine_EctA; 1. DR PROSITE; PS51186; GNAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13242.1}. FT DOMAIN 4 167 N-acetyltransferase. FT {ECO:0000259|PROSITE:PS51186}. SQ SEQUENCE 167 AA; 18874 MW; 312B3816969F7BAF CRC64; MTSITFREPR VDDANKIWEL VQNNKPLDEN SKYLYVLLCH QFSKTCVVAE YDSKIVGFLS GFISPKNHDT LFVWQAAVDD SYRNKGVAKE LVFKAFSQTD YDVRFVEATV TPSNKASLKF LQNFAAQLDA DFVKTPLFSS DVLGDGHEQE DLVRIGPIQK SLLEVTA // ID A9A273_NITMS Unreviewed; 466 AA. AC A9A273; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Helicase c2 {ECO:0000313|EMBL:ABX12784.1}; GN OrderedLocusNames=Nmar_0888 {ECO:0000313|EMBL:ABX12784.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12784.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12784.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12784.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12784.1; -; Genomic_DNA. DR ProteinModelPortal; A9A273; -. DR STRING; 436308.Nmar_0888; -. DR EnsemblBacteria; ABX12784; ABX12784; Nmar_0888. DR KEGG; nmr:Nmar_0888; -. DR eggNOG; arCOG00770; Archaea. DR eggNOG; COG1199; LUCA. DR HOGENOM; HOG000105527; -. DR OMA; RRIRICH; -. DR BioCyc; NMAR436308:GI3J-916-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR006555; ATP-dep_Helicase_C. DR InterPro; IPR010614; DEAD_2. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF06733; DEAD_2; 1. DR Pfam; PF13307; Helicase_C_2; 1. DR SMART; SM00491; HELICc2; 1. DR SUPFAM; SSF52540; SSF52540; 3. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:ABX12784.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Helicase {ECO:0000313|EMBL:ABX12784.1}; KW Hydrolase {ECO:0000313|EMBL:ABX12784.1}; KW Nucleotide-binding {ECO:0000313|EMBL:ABX12784.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 323 444 HELICc2. {ECO:0000259|SMART:SM00491}. SQ SEQUENCE 466 AA; 54140 MW; E7EC8DB6A547DA30 CRC64; MASEKVDNSR RAMRWGLTCE KGECIERTSK NGKEVIETCK FKPTIKQVEE NTQDSQSCHY YLQKYEALVS KHSLWNYHAF FQIMKFNKKL FEDYLDRKVS VFDEAHKIED QIIQFVGFDI FAGQVDECNL NADKYDFADL DSMISLTDDI AYSYAKKIKD IKESPGFEND PDYELISRLE RRYDRAAQAK IDISSDKNNF VVNDPVRDLN GNFRTISVKP IDVSKFANEF FETEYQIFMS ATIDKQSFCE NMGLKKDEVA FVDTPKSPFP IENRNVDLLN IRRLSYGSTE EDELEVIKTI DRILDEHSTE RGLILTSSIP RCQKILRYLS PKNTRRIRIC HSKNKDGKTQ DEVISEHASD PTGVLLSSSL WEGVDLKDDL SRFQIIAKVP YPNYKEKRIK AKMDKFPLWY TSQTLTKLLQ GFGRSIRSED DWARTYVLDA AANNVFFKAQ QMIPKSYYDV LGIEDL // ID A9A3A4_NITMS Unreviewed; 122 AA. AC A9A3A4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Zinc finger C2H2-type domain protein {ECO:0000313|EMBL:ABX12533.1}; GN OrderedLocusNames=Nmar_0637 {ECO:0000313|EMBL:ABX12533.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12533.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12533.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12533.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12533.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0637; -. DR EnsemblBacteria; ABX12533; ABX12533; Nmar_0637. DR KEGG; nmr:Nmar_0637; -. DR eggNOG; arCOG10531; Archaea. DR eggNOG; ENOG4110ZM9; LUCA. DR BioCyc; NMAR436308:GI3J-662-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR InterPro; IPR007087; Znf_C2H2. DR InterPro; IPR015880; Znf_C2H2-like. DR SMART; SM00355; ZnF_C2H2; 1. DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 98 122 C2H2-type. {ECO:0000259|PROSITE:PS50157}. SQ SEQUENCE 122 AA; 13726 MW; 1E961DD475527454 CRC64; MLTVDCTDVL SIKHELVVYV SDQVAAIPTL KNNQFTLSTL DDDEVIDTHT VITAIKEFLD SIDEGRNFAV IGNNNMISIT SVSGKVIERE PPHPQEMFSC SHCGFVTQYQ VELETHMKIH YL // ID A9A2V0_NITMS Unreviewed; 381 AA. AC A9A2V0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 52. DE SubName: Full=Serine--pyruvate transaminase {ECO:0000313|EMBL:ABX13627.1}; DE EC=2.6.1.51 {ECO:0000313|EMBL:ABX13627.1}; GN OrderedLocusNames=Nmar_1731 {ECO:0000313|EMBL:ABX13627.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13627.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13627.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13627.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13627.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2V0; -. DR STRING; 436308.Nmar_1731; -. DR EnsemblBacteria; ABX13627; ABX13627; Nmar_1731. DR KEGG; nmr:Nmar_1731; -. DR eggNOG; arCOG00082; Archaea. DR eggNOG; COG0075; LUCA. DR HOGENOM; HOG000171814; -. DR OMA; EWGTGVP; -. DR BioCyc; NMAR436308:GI3J-1776-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004760; F:serine-pyruvate transaminase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000192; Aminotrans_V_dom. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR InterPro; IPR024169; SP_NH2Trfase/AEP_transaminase. DR Pfam; PF00266; Aminotran_5; 1. DR PIRSF; PIRSF000524; SPT; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 4: Predicted; KW Aminotransferase {ECO:0000313|EMBL:ABX13627.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyruvate {ECO:0000313|EMBL:ABX13627.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13627.1}. FT DOMAIN 7 325 Aminotran_5. {ECO:0000259|Pfam:PF00266}. SQ SEQUENCE 381 AA; 41777 MW; EA434FA8C6D26242 CRC64; MEYLSMLPGP TNVPNRVMRA MLAPIINHRS DDFVELYTDV VDKTQQVFET KNDIVALSAS GTGAVEAGVV NLVKKGDKVI IPVNGEFSNR LSQLIEGQGA NVVKLETPPG QNATFDQVKE AFDNNKDVKA FYVVHNETST GTMVNYLDRI SDLTSRNDAF YVVDSVSLLG GAPLPVDKWG VDVCMTGAQK AIAAPPGISP ISVSPRAKKY MQENPPNTMY FNLARYFKYY DEEKHTPFTP ALPLLYAYRE ALAILLEEGL QNVFTRHKVC SDALYSGLSA MGLSPFAKEE DRSISIVALN YLDGLEDKIF RNTLANKFKV LVAGGFGNLK GKVFRVGCMG EVSPYHVMRT ISAISSTLAM MGYEVDAQAG LKTAEEKLKS L // ID A9A2Q0_NITMS Unreviewed; 121 AA. AC A9A2Q0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13577.1}; GN OrderedLocusNames=Nmar_1681 {ECO:0000313|EMBL:ABX13577.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13577.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13577.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13577.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13577.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13577; ABX13577; Nmar_1681. DR KEGG; nmr:Nmar_1681; -. DR eggNOG; arCOG07820; Archaea. DR eggNOG; COG1742; LUCA. DR HOGENOM; HOG000223633; -. DR KO; K09771; -. DR OMA; DPHFGRI; -. DR BioCyc; NMAR436308:GI3J-1726-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR HAMAP; MF_00010; UPF0060; 1. DR InterPro; IPR003844; UPF0060. DR Pfam; PF02694; UPF0060; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 55 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 67 83 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 95 112 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 121 AA; 13819 MW; 7241733A7612CADC CRC64; MSEQSKNFFT SILLFFLAGL CEIGGGYLVW LWIREDFGFV LGAVGGFVLF LYGIVPTFQK THFHRIYAAY GGVFIVMSVF WGWLIDGVQP DNYDIIGTII AVIGVLMIFY YPRKGEKIWL K // ID A9A4X6_NITMS Unreviewed; 398 AA. AC A9A4X6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=GTP-binding protein HSR1-related {ECO:0000313|EMBL:ABX13430.1}; GN OrderedLocusNames=Nmar_1534 {ECO:0000313|EMBL:ABX13430.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13430.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13430.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13430.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13430.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X6; -. DR STRING; 436308.Nmar_1534; -. DR EnsemblBacteria; ABX13430; ABX13430; Nmar_1534. DR KEGG; nmr:Nmar_1534; -. DR eggNOG; arCOG00357; Archaea. DR eggNOG; COG0012; LUCA. DR HOGENOM; HOG000087627; -. DR KO; K06942; -. DR OMA; KQGYIKY; -. DR BioCyc; NMAR436308:GI3J-1576-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR Gene3D; 3.10.20.30; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR012675; Beta-grasp_dom. DR InterPro; IPR031167; G_OBG. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR013646; MMR_HSR1_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR004095; TGS. DR InterPro; IPR012676; TGS-like. DR Pfam; PF01926; MMR_HSR1; 1. DR Pfam; PF08438; MMR_HSR1_C; 1. DR Pfam; PF02824; TGS; 1. DR PRINTS; PR00326; GTP1OBG. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF81271; SSF81271; 1. DR PROSITE; PS51710; G_OBG; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 267 OBG-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51710}. SQ SEQUENCE 398 AA; 43635 MW; 4EF02323280256DB CRC64; MRSLQIGLLG KANVGKSTFF SAATETPVAS GNFPFTTIEP NVGVAYVKAD CACKHFKIEH QTDLCVNGTR FIPVKLIDIA GLVPGAHEGK GLGNQFLDDA RQAEVLIHVV DIAGTTDIQG QPVPPGTHNP LEDVEFVQDE FDLWFADILK RDWDKITREI HQKRAKLTDG IANRFTGLGI KDFQVQDVLQ KLGFISRDPK EWSEDDIVEF ARELRKNTKP MIIAANKADL CPDLDIIKKI NDNVIPCSAE TELLLRKASK AGIVNYSSGD EGFSIAEGKE IAPPQQKALD LVKSVFEKIP STGIQKILNT AVFDSLNFIV VYPVEDETKL TNKDGVILPD TKLLPQDSTA KDLAGLIHAD IAKGFLHAID CKTKQRISGD QKLKNGDVIK IVSTLSRG // ID A9A195_NITMS Unreviewed; 359 AA. AC A9A195; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12381.1}; GN OrderedLocusNames=Nmar_0485 {ECO:0000313|EMBL:ABX12381.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12381.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12381.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12381.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12381.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0485; -. DR EnsemblBacteria; ABX12381; ABX12381; Nmar_0485. DR KEGG; nmr:Nmar_0485; -. DR eggNOG; arCOG11287; Archaea. DR eggNOG; COG3329; LUCA. DR HOGENOM; HOG000269524; -. DR KO; K07086; -. DR OMA; GLTFPFN; -. DR BioCyc; NMAR436308:GI3J-505-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR010293; Sbt_1. DR PANTHER; PTHR40400; PTHR40400; 1. DR Pfam; PF05982; Sbt_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 68 88 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 100 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 132 155 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 210 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 225 241 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 253 273 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 279 302 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 314 336 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 359 AA; 38645 MW; 01150817FC764CAD CRC64; MEILELIQAN LLTPIILFFL FGIIAARIKS DLKIPAAISE FLPIYLLAAI GLHGGIEMRN TGFENMLIPM FVAIGLSLLF TLNHYQILRR LGKFNLFDSY ALASTYGAVG AVHFSVGLSF LKNQGVSSEG YIAAILAVLE PLAFILAIFM TNMAVAKQIK TKKQSFSDDS TEIDIGLNQT KTKLSKVLHE SITGKAIVIL LGSIVIGYII GKDGFEPIKI VFDDMFTGAI VIFMIEMGII AGQRLDDIKK VGVFLTAFAI IIPLFNGTIG VLVSTALGLS VGGAVMFGLL MASASFIAAP AVLRHAIPQA KPSLYITSAL GITFPFNIIV TLPILFTLST FLHSGEGAID LFNFITEGF // ID A9A1K1_NITMS Unreviewed; 254 AA. AC A9A1K1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=ABC transporter related {ECO:0000313|EMBL:ABX13180.1}; GN OrderedLocusNames=Nmar_1284 {ECO:0000313|EMBL:ABX13180.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13180.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13180.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13180.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13180.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K1; -. DR STRING; 436308.Nmar_1284; -. DR EnsemblBacteria; ABX13180; ABX13180; Nmar_1284. DR KEGG; nmr:Nmar_1284; -. DR eggNOG; arCOG00193; Archaea. DR eggNOG; COG1116; LUCA. DR KO; K02049; -. DR OMA; RARVWDV; -. DR BioCyc; NMAR436308:GI3J-1317-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 235 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 254 AA; 28606 MW; 0C17DA3497DB67B1 CRC64; MTKLEAKNIV KYFSHDSHKL KALGGVDLKV ESGDFVCLIG PSGCGKSTFL RIVAGLEKPD EGQILFDGRP VSETGPERIM VFQEGALFPW LTVQDNVEFG LKMAGIPKEE RAKISHRYLD MMQLTKFTDS YTYQLSTGMK QRVAIARALV MDPDVLLMDE PFAALDAQTR DLLLVEMQLI WEKTKKTILF VTHSVAEAAV LGTKVAVFSN RPSTIKKEVE NDFPRPRVSE DESLLKFQQD LLSELRPEVK KNKQ // ID A9A4F8_NITMS Unreviewed; 76 AA. AC A9A4F8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12647.1}; GN OrderedLocusNames=Nmar_0751 {ECO:0000313|EMBL:ABX12647.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12647.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12647.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12647.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12647.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0751; -. DR EnsemblBacteria; ABX12647; ABX12647; Nmar_0751. DR KEGG; nmr:Nmar_0751; -. DR eggNOG; arCOG10542; Archaea. DR eggNOG; ENOG41110ZA; LUCA. DR BioCyc; NMAR436308:GI3J-777-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 76 AA; 8879 MW; 1C4886D13F3AA1B3 CRC64; MSLNEQVSKI LENFDNTSSE EIIDVLKQIQ PQFKSNLTLE YLDGKIQKIV DIEDESEKKK QCKALTPYLD WYLQGL // ID A9A4K4_NITMS Unreviewed; 384 AA. AC A9A4K4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; DE EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209}; DE AltName: Full=Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; GN Name=carA {ECO:0000256|HAMAP-Rule:MF_01209}; GN OrderedLocusNames=Nmar_1086 {ECO:0000313|EMBL:ABX12982.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12982.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12982.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12982.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: 2 ATP + L-glutamine + HCO(3)(-) + H(2)O = 2 CC ADP + phosphate + L-glutamate + carbamoyl phosphate. CC {ECO:0000256|HAMAP-Rule:MF_01209}. CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; CC carbamoyl phosphate from bicarbonate: step 1/1. CC {ECO:0000256|HAMAP-Rule:MF_01209}. CC -!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo CC pathway; (S)-dihydroorotate from bicarbonate: step 1/3. CC {ECO:0000256|HAMAP-Rule:MF_01209}. CC -!- SUBUNIT: Composed of two chains; the small (or glutamine) chain CC promotes the hydrolysis of glutamine to ammonia, which is used by CC the large (or ammonia) chain to synthesize carbamoyl phosphate. CC {ECO:0000256|HAMAP-Rule:MF_01209}. CC -!- SIMILARITY: Belongs to the CarA family. {ECO:0000256|HAMAP- CC Rule:MF_01209}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000256|HAMAP-Rule:MF_01209}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12982.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4K4; -. DR STRING; 436308.Nmar_1086; -. DR MEROPS; C26.A33; -. DR EnsemblBacteria; ABX12982; ABX12982; Nmar_1086. DR KEGG; nmr:Nmar_1086; -. DR eggNOG; arCOG00064; Archaea. DR eggNOG; COG0505; LUCA. DR HOGENOM; HOG000038087; -. DR KO; K01956; -. DR OMA; TNAHIGN; -. DR BioCyc; NMAR436308:GI3J-1117-MONOMER; -. DR UniPathway; UPA00068; UER00171. DR UniPathway; UPA00070; UER00115. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004088; F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.880; -; 1. DR Gene3D; 3.50.30.20; -; 1. DR HAMAP; MF_01209; CPSase_S_chain; 1. DR InterPro; IPR006274; CarbamoylP_synth_ssu. DR InterPro; IPR002474; CarbamoylP_synth_ssu_N. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR Pfam; PF00988; CPSase_sm_chain; 1. DR Pfam; PF00117; GATase; 1. DR SMART; SM01097; CPSase_sm_chain; 1. DR SUPFAM; SSF52021; SSF52021; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR01368; CPSaseIIsmall; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_01209}; KW Arginine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01209}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01209}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_01209}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_01209}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01209}; KW Pyrimidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01209}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 200 384 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. FT REGION 1 200 CPSase. {ECO:0000256|HAMAP- FT Rule:MF_01209}. FT ACT_SITE 276 276 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_01209}. FT ACT_SITE 361 361 {ECO:0000256|HAMAP-Rule:MF_01209}. FT ACT_SITE 363 363 {ECO:0000256|HAMAP-Rule:MF_01209}. SQ SEQUENCE 384 AA; 42708 MW; E4E465AE8117A542 CRC64; MLRVTISTKK STHAKKFGKL IFDDGTVLDG EGFGYSTTVF GEIVFNTGMV GYTEALTDPS YKGQILTLTY PLVGNYGVPD PEVKDDDGIP KYFEANEIQA RGLVIHELSH TASHWNLSMT LDEWMYNEKI PGIAEIDTRA LTKKLRTSGV MMAALVVSDT EIDVEAVKKQ LSEATNYNSE QFMDAVSTKE EKVYGNEEQT VVVIDTGAKF AIIRNVRELG YKVVVVPWNT SYEKIMSYNP KGIVLSSGPG DPQNCPATIE TTKKLIENNI PTLGICLGAQ IIGIAGNTET YKLKYGHRGQ NKPCVNLETN QVYVTSQNHG YGIKPESLEK SDFNLWFTNA DDKTVEGIKH KTKRCIAVQF HPEAAPGPFD CKYVFEELKE LMEK // ID A9A3P8_NITMS Unreviewed; 165 AA. AC A9A3P8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13310.1}; GN OrderedLocusNames=Nmar_1414 {ECO:0000313|EMBL:ABX13310.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13310.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13310.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13310.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13310.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1414; -. DR EnsemblBacteria; ABX13310; ABX13310; Nmar_1414. DR KEGG; nmr:Nmar_1414; -. DR eggNOG; arCOG08774; Archaea. DR eggNOG; ENOG411117P; LUCA. DR HOGENOM; HOG000109192; -. DR OMA; DGVENIH; -. DR BioCyc; NMAR436308:GI3J-1449-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 165 AA; 18493 MW; F12A4AD7A09E768B CRC64; MASKKGIAIT IIILGAITGA SFLVWTVPQQ NETTFIITDY ENYLDGAKSI HEVLQKSTDI EYQKLLDGEI TPDQYITSAD VTSSQVTSQI SEFVTSKPPE EWQNSYISFM DGMKKFNSYI GETKVLANLI QNESSQEEFT EAMEKIESLK AESMELVKIS DDSRP // ID A9A5U9_NITMS Unreviewed; 115 AA. AC A9A5U9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13104.1}; GN OrderedLocusNames=Nmar_1208 {ECO:0000313|EMBL:ABX13104.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13104.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13104.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13104.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13104.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13104; ABX13104; Nmar_1208. DR KEGG; nmr:Nmar_1208; -. DR BioCyc; NMAR436308:GI3J-1241-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 12563 MW; 0259937CC5781546 CRC64; MKQKILLLAA LFAPLLLVFS NIPAAEAQQS TNYEHDPNIE KVIVEKREGT AGYANYLVKI CADDSSMKLG KMMLHSDLDQ ILLEFNKSLA KGDCTFAGAV LKNSNLDSLG ATFLN // ID A9A1J6_NITMS Unreviewed; 213 AA. AC A9A1J6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13175.1}; GN OrderedLocusNames=Nmar_1279 {ECO:0000313|EMBL:ABX13175.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13175.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13175.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13175.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13175.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1279; -. DR EnsemblBacteria; ABX13175; ABX13175; Nmar_1279. DR KEGG; nmr:Nmar_1279; -. DR OMA; RFITIIM; -. DR BioCyc; NMAR436308:GI3J-1312-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 213 AA; 23377 MW; B325AE688C9252CA CRC64; MFSKNTSMFM IASVATVMLF SVASSEEAFA HGGQVVSFTL PNGDQRFITI IMGHSNEPTR AQEAGKWSGE HNMELFISDT RTKLNLAEAD LKVDKFYYKN DRQYNKAVEK GFKPLVKDAD VGGVHGDPGH YYARQILAQP GIYGYHVTGT VDYFGVMDVP IDVKAICRDA PDGGSAFNNP SWFGGFGCTA DIDDGKFPAK GKKSNHNNDD KDD // ID A9A350_NITMS Unreviewed; 170 AA. AC A9A350; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:ABX12178.1}; GN OrderedLocusNames=Nmar_0282 {ECO:0000313|EMBL:ABX12178.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12178.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12178.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12178.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12178.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0282; -. DR EnsemblBacteria; ABX12178; ABX12178; Nmar_0282. DR KEGG; nmr:Nmar_0282; -. DR eggNOG; arCOG04654; Archaea. DR eggNOG; COG0839; LUCA. DR HOGENOM; HOG000109719; -. DR OMA; WPALILM; -. DR BioCyc; NMAR436308:GI3J-292-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR InterPro; IPR001457; NADH_UbQ/plastoQ_OxRdtase_su6. DR Pfam; PF00499; Oxidored_q3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:ABX12178.1}. FT TRANSMEM 43 70 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 91 109 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 135 158 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 170 AA; 18338 MW; 50A6028EACF86C2D CRC64; MADAAFLALT VITIGSAIAA LELRSLVYGS IALMGTLGGI AGFFFLLDAP FVALFQLAVY VGSIAVLILF TVMLVKRELI FKKIEDKRRK FAGIGLMLVI MVALGAVFLD SGIKTITTDE PPVDFRDIGT DFVTYYWPAL ILMGLILAGS VTGALVLAKR EDVENDQRTD // ID A9A5V7_NITMS Unreviewed; 500 AA. AC A9A5V7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13112.1}; GN OrderedLocusNames=Nmar_1216 {ECO:0000313|EMBL:ABX13112.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13112.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13112.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13112.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13112.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1216; -. DR EnsemblBacteria; ABX13112; ABX13112; Nmar_1216. DR KEGG; nmr:Nmar_1216; -. DR eggNOG; arCOG00371; Archaea. DR eggNOG; COG1196; LUCA. DR BioCyc; NMAR436308:GI3J-1249-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 139 194 {ECO:0000256|SAM:Coils}. FT COILED 235 262 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 500 AA; 57559 MW; 75198EDC8BE10348 CRC64; MRKPYSDETR NDIVEKYLLG ESVREIHDST GVSTGSISEY INDFTSKIER KTIDAIHDFF KIIRKNGMQP KDAFYGHVVF SILLKHNLDP KQIHSFVESV LSMAKQNELS PEHLVGLCNT ISKIQSKSDV PLHEIENHCT ELVKTKNELE LSIDKLSDQH KQSQNNLSAL LKKNKLTEQQ VEKITQTLEF LEKSGFDLSD ADSVCNVLQN VKSQEYDIAK IISYLSKDES VDLRLNEKQS KLDEVEKKTG NLEKKYKELS LKHENLLLRH KSMAESISSV ENLTKSGVLE QDLISWQKIF DSFEMAPKEF LEELEKAGNA KKLFRKLNSV NSKLKKENES LEKKKLWLES HNDEIKLEIS NGTEFAKNNL NDISKHAKSE LNSVVSHTED KINKLVKQNK IQADHIQKQH EEYLQELIHT FETHLKHSHK IEHTLGKLES LKPLFDLVNG KFDPIASIGQ IITLLDKIYV GIKGTEFDKH SISYDIKRLR ENLLKVISHE // ID A9A3Y4_NITMS Unreviewed; 94 AA. AC A9A3Y4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13684.1}; GN OrderedLocusNames=Nmar_1788 {ECO:0000313|EMBL:ABX13684.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13684.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13684.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13684.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13684.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1788; -. DR EnsemblBacteria; ABX13684; ABX13684; Nmar_1788. DR KEGG; nmr:Nmar_1788; -. DR eggNOG; arCOG08809; Archaea. DR eggNOG; ENOG41110FH; LUCA. DR HOGENOM; HOG000110340; -. DR OMA; WFILPAP; -. DR BioCyc; NMAR436308:GI3J-1836-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 40 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 64 82 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 94 AA; 10612 MW; 1ACAEE6F05A15BA9 CRC64; MSHTGVDVID FLFYTIYPVI GIFIVEGISR VVKAPKWAKL WTQAVVSIGF GVYYWFILPA PQNFPLTALV MFALAIALIY QGRRAKISPE KSPY // ID A9A5X4_NITMS Unreviewed; 306 AA. AC A9A5X4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 47. DE SubName: Full=Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:ABX13452.1}; GN OrderedLocusNames=Nmar_1556 {ECO:0000313|EMBL:ABX13452.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13452.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13452.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13452.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13452.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X4; -. DR STRING; 436308.Nmar_1556; -. DR EnsemblBacteria; ABX13452; ABX13452; Nmar_1556. DR KEGG; nmr:Nmar_1556; -. DR eggNOG; arCOG04692; Archaea. DR eggNOG; COG0546; LUCA. DR HOGENOM; HOG000111031; -. DR OMA; FTMDDWE; -. DR BioCyc; NMAR436308:GI3J-1599-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1000; -; 2. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006439; HAD-SF_hydro_IA. DR SUPFAM; SSF56784; SSF56784; 1. DR TIGRFAMs; TIGR01549; HAD-SF-IA-v1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13452.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 306 AA; 34415 MW; 2AD016B2E07AA024 CRC64; MDSQKFDSII FDCDGVLVDI TQSYDKTIDK TCRYVLKEFA KIDSITIDHK IIDGFKSSGG FNDEVDLVYA AILSLYTANK LNKKPSEFIY DVISNTDKTG IRSVQSYLES IYDVSEFLSK LGSLGDRHNN PVYSIFDQFF FGPELYGKLF DKQSKFSEEG MISNDKVILS VSLLETLQKE FGKKIAVVTG RGIESIRYSL KDMMDYFDTK NSAFLEDEPR ELAKPNPATL IRAIQSMESK NCLYVGDSME DYMMAKDAAQ AGHSTTFCAI VGTSTNPEDR RKLFADSGVE MILESINDIP KVLNLV // ID A9A2W4_NITMS Unreviewed; 297 AA. AC A9A2W4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=PfkB domain protein {ECO:0000313|EMBL:ABX13641.1}; GN OrderedLocusNames=Nmar_1745 {ECO:0000313|EMBL:ABX13641.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13641.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13641.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13641.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13641.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2W4; -. DR STRING; 436308.Nmar_1745; -. DR EnsemblBacteria; ABX13641; ABX13641; Nmar_1745. DR KEGG; nmr:Nmar_1745; -. DR eggNOG; arCOG00014; Archaea. DR eggNOG; COG0524; LUCA. DR HOGENOM; HOG000035481; -. DR OMA; SFCVEKF; -. DR BioCyc; NMAR436308:GI3J-1792-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016773; F:phosphotransferase activity, alcohol group as acceptor; IEA:InterPro. DR Gene3D; 3.40.1190.20; -; 1. DR InterPro; IPR002173; Carboh/pur_kinase_PfkB_CS. DR InterPro; IPR011611; PfkB_dom. DR InterPro; IPR029056; Ribokinase-like. DR Pfam; PF00294; PfkB; 1. DR SUPFAM; SSF53613; SSF53613; 1. DR PROSITE; PS00584; PFKB_KINASES_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 273 PfkB. {ECO:0000259|Pfam:PF00294}. SQ SEQUENCE 297 AA; 32991 MW; A87AF8105B1C2062 CRC64; MLTVFGSTAL DTIRTPKKTL KNVLGGAATF AAISASNFVD TGLIAVVGKD FPKQHHKTLS KYLDLEGLSI KNGKTFRYDG KYDDTLSTRS TLKTELNVLA DFKPTVPEAY RKSQFVYLAN NDPEQNTALI KEFDKVKFSM CDTIDFWIST KRNAVIKMIK SVDAVVINDE EAKLLTKEFN LIKCAKKMMQ WGAKYVIIKK GEHGSLMFYD DVIFPTAGFS LEDVVDPTGA GDSFAGAMIG YLASKKSTSL SEIKKAVIYG NVLGSFAVEK YGLEGLLKIK NGDITKRVKM YEKMIRF // ID A9A294_NITMS Unreviewed; 110 AA. AC A9A294; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12805.1}; GN OrderedLocusNames=Nmar_0909 {ECO:0000313|EMBL:ABX12805.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12805.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12805.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12805.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12805.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12805; ABX12805; Nmar_0909. DR KEGG; nmr:Nmar_0909; -. DR BioCyc; NMAR436308:GI3J-937-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 110 AA; 13221 MW; 95B716769E2B0014 CRC64; MKFKKDSESL NENSELRILA EYNRRLKQLK ITQKKVNNLR NHEMDEEANK VQDLVKLLVE EMEAYFRTYR SILTKYGILP EYPLEIDDIT KEERDTATAW QNAHRKKYGI // ID A9A474_NITMS Unreviewed; 77 AA. AC A9A474; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12258.1}; GN OrderedLocusNames=Nmar_0362 {ECO:0000313|EMBL:ABX12258.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12258.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12258.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12258.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12258.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12258; ABX12258; Nmar_0362. DR KEGG; nmr:Nmar_0362; -. DR BioCyc; NMAR436308:GI3J-378-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 77 AA; 9155 MW; A56463C6C7C006B8 CRC64; MPLYCKQCEE RRYPQYSADD KGTLWLCNKC QNYADAEDVI IREQTQEERD EIKAKAEEFE RTSKFSGEKL SRRKGVN // ID A9A5H2_NITMS Unreviewed; 134 AA. AC A9A5H2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Pyridoxamine 5'-phosphate oxidase-related FMN-binding {ECO:0000313|EMBL:ABX12683.1}; GN OrderedLocusNames=Nmar_0787 {ECO:0000313|EMBL:ABX12683.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12683.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12683.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12683.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12683.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5H2; -. DR STRING; 436308.Nmar_0787; -. DR EnsemblBacteria; ABX12683; ABX12683; Nmar_0787. DR KEGG; nmr:Nmar_0787; -. DR eggNOG; arCOG00516; Archaea. DR eggNOG; ENOG410YW42; LUCA. DR HOGENOM; HOG000022434; -. DR OMA; PVWIDYD; -. DR BioCyc; NMAR436308:GI3J-813-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004733; F:pyridoxamine-phosphate oxidase activity; IEA:InterPro. DR Gene3D; 2.30.110.10; -; 1. DR InterPro; IPR019920; F420-binding_dom_put. DR InterPro; IPR011576; Pyridox_Oxase_FMN-bd. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR Pfam; PF01243; Pyridox_oxidase; 1. DR SUPFAM; SSF50475; SSF50475; 1. DR TIGRFAMs; TIGR03618; Rv1155_F420; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 83 Pyridox_oxidase. FT {ECO:0000259|Pfam:PF01243}. SQ SEQUENCE 134 AA; 15567 MW; 08BB49B289AD79E8 CRC64; MDEKAVKLFS EKNLVYIATV MKDGSPQVSP VWANYEDGYV LVNTAEGRIK HKNVLRDPRV AVSVVSKNNP LDMTTIRGVV EELIPDYDYK HADKLTQQYM DREHYPFKRD DEKRIILKIK PNKVFVLPEL KMSD // ID A9A1S4_NITMS Unreviewed; 151 AA. AC A9A1S4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12045.1}; GN OrderedLocusNames=Nmar_0145 {ECO:0000313|EMBL:ABX12045.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12045.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12045.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12045.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12045.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0145; -. DR EnsemblBacteria; ABX12045; ABX12045; Nmar_0145. DR KEGG; nmr:Nmar_0145; -. DR KO; K01790; -. DR BioCyc; NMAR436308:GI3J-148-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.120.10; -; 1. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin. DR InterPro; IPR008894; WxcM_C. DR Pfam; PF05523; FdtA; 1. DR SUPFAM; SSF51182; SSF51182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 138 FdtA. {ECO:0000259|Pfam:PF05523}. SQ SEQUENCE 151 AA; 17587 MW; 0C7C731C080505E6 CRC64; MNSKIKEIPL ETHPTKDTRS NKINGTLSVI WRDWDKFIEN DPKMVYVSSV HPRGIKGPHL HKKRNSCFVC IKGKVIFIVK ENGKYTEILA DENNPKMVYI PKNVPSAHIN LSENISSILT LADISWKPND NEMENVNFED YNWEKWTKFS Q // ID A9A537_NITMS Unreviewed; 103 AA. AC A9A537; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11946.1}; GN OrderedLocusNames=Nmar_0046 {ECO:0000313|EMBL:ABX11946.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11946.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11946.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11946.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11946.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0046; -. DR EnsemblBacteria; ABX11946; ABX11946; Nmar_0046. DR KEGG; nmr:Nmar_0046; -. DR eggNOG; arCOG08817; Archaea. DR eggNOG; ENOG4111106; LUCA. DR HOGENOM; HOG000110587; -. DR OMA; CGLYATR; -. DR BioCyc; NMAR436308:GI3J-46-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 103 AA; 12792 MW; 83DF9E46AA2C40C8 CRC64; MPNCPECTHR ERKKIQEKYE SEVPEEERSR EDLFKLYDEI DIPMKMDEKN RRNFVCKRCG LYATREQVSD IRYKLNQKER TRDDKHDDYL EWWSKSKKEK AEN // ID A9A2Y0_NITMS Unreviewed; 179 AA. AC A9A2Y0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12108.1}; GN OrderedLocusNames=Nmar_0212 {ECO:0000313|EMBL:ABX12108.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12108.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12108.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12108.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12108.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12108; ABX12108; Nmar_0212. DR KEGG; nmr:Nmar_0212; -. DR eggNOG; arCOG08024; Archaea. DR eggNOG; ENOG4110ZNU; LUCA. DR HOGENOM; HOG000104995; -. DR OMA; MSFGEVD; -. DR BioCyc; NMAR436308:GI3J-217-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR026870; Zinc_ribbon_dom. DR Pfam; PF13240; zinc_ribbon_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 158 178 zinc_ribbon_2. FT {ECO:0000259|Pfam:PF13240}. SQ SEQUENCE 179 AA; 18785 MW; 61DADB4C97DE01A8 CRC64; MSFGEVDTLN MLFDKLQSLF DESQGYYESF LDTNNMYKKG QISDKEFFQK LGDYTVAYSA LEFLAIKVIF ELKKSIGSGS GNTQSPGLMP GMGQPGMMAG GMPGGMPSRA GTAQNPVGGG PPGIVSAQEA FNDVGTLPSP DPALMPRQTA PQSNGNGCSS CGAELRPNAK FCTKCGAKA // ID A9A4I5_NITMS Unreviewed; 81 AA. AC A9A4I5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12963.1}; GN OrderedLocusNames=Nmar_1067 {ECO:0000313|EMBL:ABX12963.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12963.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12963.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12963.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12963.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1067; -. DR EnsemblBacteria; ABX12963; ABX12963; Nmar_1067. DR KEGG; nmr:Nmar_1067; -. DR eggNOG; arCOG08788; Archaea. DR eggNOG; ENOG411100P; LUCA. DR HOGENOM; HOG000109830; -. DR OMA; TFWGYYA; -. DR BioCyc; NMAR436308:GI3J-1098-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 81 AA; 9254 MW; 89018A04D411C756 CRC64; MIEQEDAKKV VEVIGNNLIG VSHDSTSFQK LPDSFWGYFA RGHDKKGNFG VIVTYSEDGK DVDELIKMYE EWAEKNKPKS E // ID A9A287_NITMS Unreviewed; 180 AA. AC A9A287; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12798.1}; GN OrderedLocusNames=Nmar_0902 {ECO:0000313|EMBL:ABX12798.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12798.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12798.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12798.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12798.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12798; ABX12798; Nmar_0902. DR KEGG; nmr:Nmar_0902; -. DR eggNOG; ENOG4102UA6; Archaea. DR eggNOG; ENOG4110ZJR; LUCA. DR BioCyc; NMAR436308:GI3J-930-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 180 AA; 21136 MW; FC5EE1E27D779E3C CRC64; MSLEKIMMLK SEKSIKEYLQ KLPDDTIIKY YLDVEYSPFP ILVIEEYTRR FKKKTKNEII KDLKYQSRLA RKKTQELGKM AKRHKLVDDV TKQKSDEIIK HAKKRGFEIS QAISKKKEKL ATKLKKTAKP GTVKKRISTK LKTSTQKHLE ELEKLGELKK QGLITAKEFQ DTKKKILAKI // ID A9A3Q9_NITMS Unreviewed; 213 AA. AC A9A3Q9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13321.1}; GN OrderedLocusNames=Nmar_1425 {ECO:0000313|EMBL:ABX13321.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13321.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13321.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13321.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13321.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1425; -. DR EnsemblBacteria; ABX13321; ABX13321; Nmar_1425. DR KEGG; nmr:Nmar_1425; -. DR eggNOG; arCOG08771; Archaea. DR eggNOG; ENOG4110ZNI; LUCA. DR HOGENOM; HOG000109136; -. DR OMA; FFIAFSH; -. DR BioCyc; NMAR436308:GI3J-1460-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 35 59 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 90 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 102 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 126 144 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 151 172 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 178 198 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 213 AA; 23677 MW; 1148DA7348E3143E CRC64; MEFLLENILN LIGFLVGLGI GIMSLIGFRN TGSPTLFRLT IAFFSISIGF FVIWAGYMAE DFVIKSGNIE RWIQTLGIAI QTVGYFFIAF SHSIKSFFPK SSYFRSVGIL PFFLVSSVQL EHLFRSVSFI LLAYGAIETM LSYLDNRNKG AISVSIGLAL LALGEFLGWY SFVFPESILY SVSMVIKIGG LIALFIPVSK VPLTKIKFDE GLE // ID A9A5M1_NITMS Unreviewed; 268 AA. AC A9A5M1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12732.1}; GN OrderedLocusNames=Nmar_0836 {ECO:0000313|EMBL:ABX12732.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12732.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12732.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12732.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12732.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0836; -. DR EnsemblBacteria; ABX12732; ABX12732; Nmar_0836. DR KEGG; nmr:Nmar_0836; -. DR eggNOG; arCOG03441; Archaea. DR eggNOG; ENOG410YVKH; LUCA. DR BioCyc; NMAR436308:GI3J-863-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 268 AA; 30281 MW; 20B0C24DC04B9EDB CRC64; MVLSEVNKDE EAQLQWEKEA KRIQQIKNPT EPVVEPTPEP EPVVEPTPEP EPVVEPTPEP EPVVEPTPEP EPVVEPTPEP EPVVEPTPEP EPVVEPTPEP EPVVEPTPEP EESQLPEISI KTSYDETPST EFNSAALLET ASDEEVNSRI TFEEFTDEKT LISHDAFGNK QMKIKVLEVS DENPPMKWKF GDRVKVTKIL VTIKHLATQE VEEGEFDVEA IERELQEKRH YTSTNRWIPA EDIKNGYVVG SKHTRLISDA SALDYIVF // ID A9A632_NITMS Unreviewed; 251 AA. AC A9A632; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE RecName: Full=GTP cyclohydrolase III {ECO:0000256|HAMAP-Rule:MF_00608}; DE EC=3.5.4.29 {ECO:0000256|HAMAP-Rule:MF_00608}; GN Name=gch3 {ECO:0000256|HAMAP-Rule:MF_00608}; GN OrderedLocusNames=Nmar_1614 {ECO:0000313|EMBL:ABX13510.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13510.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13510.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13510.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the formation of 2-amino-5-formylamino-6- CC ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate CC and inorganic phosphate from GTP. Also has an independent CC pyrophosphate phosphohydrolase activity. {ECO:0000256|HAMAP- CC Rule:MF_00608}. CC -!- CATALYTIC ACTIVITY: GTP + 3 H(2)O = 2-amino-5-formylamino-6-(5- CC phospho-D-ribosylamino)pyrimidin-4(3H)-one + 2 phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00608}. CC -!- SIMILARITY: Belongs to the archaeal-type GTP cyclohydrolase CC family. {ECO:0000256|HAMAP-Rule:MF_00608}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13510.1; -; Genomic_DNA. DR ProteinModelPortal; A9A632; -. DR STRING; 436308.Nmar_1614; -. DR EnsemblBacteria; ABX13510; ABX13510; Nmar_1614. DR KEGG; nmr:Nmar_1614; -. DR eggNOG; arCOG04202; Archaea. DR eggNOG; COG2429; LUCA. DR KO; K08096; -. DR OMA; GYVFFTR; -. DR BioCyc; NMAR436308:GI3J-1658-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0043740; F:GTP cyclohydrolase IIa activity; IEA:UniProtKB-EC. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR HAMAP; MF_00608; GTP_cyclohydro_3; 1. DR InterPro; IPR000160; GGDEF_dom. DR InterPro; IPR007839; GTP_CycHdrlase_3. DR Pfam; PF05165; GCH_III; 1. DR PIRSF; PIRSF009265; GTP_cyclohydro_3; 1. DR ProDom; PD313320; GTP_CycHdrlase_3; 1. DR PROSITE; PS50887; GGDEF; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW GTP-binding {ECO:0000256|HAMAP-Rule:MF_00608}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00608, KW ECO:0000313|EMBL:ABX13510.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00608}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 128 249 GGDEF. {ECO:0000259|PROSITE:PS50887}. SQ SEQUENCE 251 AA; 28543 MW; 3D4B5CE915AC7278 CRC64; MIQLSILKIT GYGPWTLTLG SDREHELQML QASLYKQLQK LFSEKNCLVF LNRADEFFVV SNGVGLEEHI EIQKTLEKSF EVYLTISIGF AESPFEANLK AYDGKKNEVV LDKQYNIFGF VNDDTSDSKI TIMHLDVDDL SSKRTTNSPY EISSIIFQLY SRMSKYFLEK NSLTFFMGGD NFMVVASDDG KKSVQDFINM IKNDDKIFLN CGIGNASTCR DAVKLATKSL DTIREIRDSG KEKPEVYELS C // ID A9A1V0_NITMS Unreviewed; 197 AA. AC A9A1V0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12071.1}; GN OrderedLocusNames=Nmar_0175 {ECO:0000313|EMBL:ABX12071.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12071.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12071.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12071.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12071.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0175; -. DR EnsemblBacteria; ABX12071; ABX12071; Nmar_0175. DR KEGG; nmr:Nmar_0175; -. DR eggNOG; arCOG10517; Archaea. DR eggNOG; ENOG4110ZZC; LUCA. DR BioCyc; NMAR436308:GI3J-176-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 59 79 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 155 177 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 197 AA; 21585 MW; 247E02FDF29FA372 CRC64; MRLIQRISNS TLVKSGNLVH IICILSVIGP VITVSAGFWD AISHLQKEPE FFWSPSHMIV YTGVSMTAVA AVLGGMLLIR KSVHRSLKTG IKLVMIGSVI QIISGFGDSL SHEVYGIDGL ISWSHQPLEL GLVLGSLGGL LILKNREHTK LKLLLPFSIV TFLFFTIWLG FNLVLIFGHT IQCIPVYEIF SSGCAIL // ID A9A2W0_NITMS Unreviewed; 298 AA. AC A9A2W0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13637.1}; GN OrderedLocusNames=Nmar_1741 {ECO:0000313|EMBL:ABX13637.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13637.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13637.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13637.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13637.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1741; -. DR EnsemblBacteria; ABX13637; ABX13637; Nmar_1741. DR KEGG; nmr:Nmar_1741; -. DR eggNOG; arCOG08768; Archaea. DR eggNOG; ENOG4110ZWC; LUCA. DR OMA; SEINDIW; -. DR BioCyc; NMAR436308:GI3J-1788-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 273 292 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 298 AA; 33755 MW; 979CB401FBE716A4 CRC64; MNSKIFAVLV IVSLVAVIPT AYAQVSIAEK ADQKLVEVRI DLEGNVHVTH VIDDTKSPKQ VDLISGTVSN ISVIDKQGGE KQFSVVGDNN AVLILPSNED SILQYELDDV ISEINDIWTW DFLYLESTSF ILPEEVDLVF VNERPVYLGD MKGINCHGCQ MLLEYSINKL QIKQNVEWED KQFLVEIVSN SNVDNFVFDQ PSKSIAFDVS EKNRFVNTVI PLELLWGPYS VFLDDEKMFY QEYFNNGTHV WVTIVPETSG EVTIIGTTVV PEFSIMLPLI IGFFVILAMP FMKKFNLR // ID A9A404_NITMS Unreviewed; 171 AA. AC A9A404; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:ABX12188.1}; GN OrderedLocusNames=Nmar_0292 {ECO:0000313|EMBL:ABX12188.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12188.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12188.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12188.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12188.1; -; Genomic_DNA. DR ProteinModelPortal; A9A404; -. DR STRING; 436308.Nmar_0292; -. DR EnsemblBacteria; ABX12188; ABX12188; Nmar_0292. DR KEGG; nmr:Nmar_0292; -. DR eggNOG; arCOG00833; Archaea. DR eggNOG; COG0456; LUCA. DR HOGENOM; HOG000078523; -. DR KO; K03789; -. DR OMA; RVEYGWS; -. DR BioCyc; NMAR436308:GI3J-304-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008080; F:N-acetyltransferase activity; IEA:InterPro. DR GO; GO:0006474; P:N-terminal protein amino acid acetylation; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR000182; GNAT_dom. DR InterPro; IPR006464; Rbsml_AcTrfase. DR Pfam; PF00583; Acetyltransf_1; 1. DR SUPFAM; SSF55729; SSF55729; 1. DR TIGRFAMs; TIGR01575; rimI; 1. DR PROSITE; PS51186; GNAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12188.1}. FT DOMAIN 17 171 N-acetyltransferase. FT {ECO:0000259|PROSITE:PS51186}. SQ SEQUENCE 171 AA; 19548 MW; BE8B780809989FE4 CRC64; MVLSLSMQVI LRQLGDCNIR RAESSDLIPV MEINLKTLPE HYSDYFYESL LAELPEAFIV AEIGGKHVGY IMCKTEYGFS NFKKLGFVKK GHVVSVAVLD DYRKRGIGKA LVEESVNGVK LRKCDEFYLE VRCSNVEAVR LYEKLGFVIR QQLNAYYRDG EDAYLMAIEL T // ID A9A5D0_NITMS Unreviewed; 272 AA. AC A9A5D0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 50. DE RecName: Full=Exosome complex component Rrp42 {ECO:0000256|HAMAP-Rule:MF_00622}; GN Name=rrp42 {ECO:0000256|HAMAP-Rule:MF_00622}; GN OrderedLocusNames=Nmar_0433 {ECO:0000313|EMBL:ABX12329.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12329.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12329.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12329.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Non-catalytic component of the exosome, which is a CC complex involved in RNA degradation. Contributes to the CC structuring of the Rrp41 active site. {ECO:0000256|HAMAP- CC Rule:MF_00622}. CC -!- SUBUNIT: Component of the archaeal exosome complex. Forms a CC hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 CC heterodimers. The hexameric ring associates with a trimer of Rrp4 CC and/or Csl4 subunits. {ECO:0000256|HAMAP-Rule:MF_00622}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00622}. CC -!- SIMILARITY: Belongs to the RNase PH family. Rrp42 subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00622}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12329.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5D0; -. DR STRING; 436308.Nmar_0433; -. DR EnsemblBacteria; ABX12329; ABX12329; Nmar_0433. DR KEGG; nmr:Nmar_0433; -. DR eggNOG; arCOG01574; Archaea. DR eggNOG; COG2123; LUCA. DR HOGENOM; HOG000229504; -. DR KO; K12589; -. DR OMA; VWIVFID; -. DR BioCyc; NMAR436308:GI3J-451-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW. DR GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.70; -; 1. DR HAMAP; MF_00622; Exosome_Rrp42; 1. DR InterPro; IPR001247; ExoRNase_PH_dom1. DR InterPro; IPR015847; ExoRNase_PH_dom2. DR InterPro; IPR027408; PNPase/RNase_PH_dom. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR020869; Rrp42_archaea. DR Pfam; PF01138; RNase_PH; 1. DR Pfam; PF03725; RNase_PH_C; 1. DR SUPFAM; SSF54211; SSF54211; 2. DR SUPFAM; SSF55666; SSF55666; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00622}; KW Exosome {ECO:0000256|HAMAP-Rule:MF_00622}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 32 167 RNase_PH. {ECO:0000259|Pfam:PF01138}. FT DOMAIN 191 252 RNase_PH_C. {ECO:0000259|Pfam:PF03725}. SQ SEQUENCE 272 AA; 29270 MW; 5FBE734CC9430DEE CRC64; MTSHTVIDEL KRNQILELLE QGKRVDGRAL DESREVSIET NAIPKANGSA RVRLGDTEVV CGVKIQPDRP FPDTGDKGLF ICTAELLPLS HPTVETGPPG PEVIELARVV DRGIRESHMI DVSQLVIEKD KSVIGVFADN VVVDYDGNLF DACSYAATAA LLSSKSPKWN WVDDAPALVE GEEVDVPITT IPVSVTMGKI GNHIIVDPNG DEWASMDARI TITSDSDGNI CALQKGGDDG FTQDEIVQCG EISVRVGAKI REKLKAAQQG GQ // ID A9A4I0_NITMS Unreviewed; 407 AA. AC A9A4I0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 45. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12958.1}; GN OrderedLocusNames=Nmar_1062 {ECO:0000313|EMBL:ABX12958.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12958.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12958.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12958.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12958.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4I0; -. DR STRING; 436308.Nmar_1062; -. DR EnsemblBacteria; ABX12958; ABX12958; Nmar_1062. DR KEGG; nmr:Nmar_1062; -. DR BioCyc; NMAR436308:GI3J-1093-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009279; C:cell outer membrane; IEA:InterPro. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0016849; F:phosphorus-oxygen lyase activity; IEA:InterPro. DR GO; GO:0009190; P:cyclic nucleotide biosynthetic process; IEA:InterPro. DR GO; GO:0035556; P:intracellular signal transduction; IEA:InterPro. DR Gene3D; 2.40.230.20; -; 1. DR Gene3D; 3.30.70.1230; -; 1. DR InterPro; IPR001054; A/G_cyclase. DR InterPro; IPR018013; Channel_Tsx-like. DR InterPro; IPR029787; Nucleotide_cyclase. DR Pfam; PF00211; Guanylate_cyc; 1. DR SUPFAM; SSF55073; SSF55073; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 87 165 Guanylate cyclase. FT {ECO:0000259|Pfam:PF00211}. SQ SEQUENCE 407 AA; 46168 MW; 9A875583009449CA CRC64; MTYVVVIMDF TASLRLIHAN FFFVDIVGLS DTSMSTKTQI KKIETLNKCI SDCKSFQSVP IDSLLLLPTG DGCCIGFLQG PELPLLLAIE LHEKLAQYNK AKIPSETVRV RIGLHSGNCF LVNDLLGQRN TWGPGIIYAR RVMDFGDDGH ILLSPSLAED LRSLSDEYRE VIKPVHDVVL KHGMTMLLYS AYGEGFGNKK HPEKGASMRS KYGEEILRLQ KTTLYPSIDL VLSVIDPEKM IVEHKRTYEV VNTSNEPIKT VLHGIATDVD IPDINDMNIN VYDEKDRECP ITSINVDKPD VKEFTTQFSE PITKEDTGKK YTLQYAVEEP ERYFENAFLI DCQKFNMAFK YPTGNGIKRP ELLEINQETE AKTPSKIVPE ISTEGTQEII KWTMEDIPKG KTYRIEW // ID A9A5R6_NITMS Unreviewed; 179 AA. AC A9A5R6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; DE EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209}; DE AltName: Full=Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; GN Name=ppa {ECO:0000256|HAMAP-Rule:MF_00209}; GN OrderedLocusNames=Nmar_1175 {ECO:0000313|EMBL:ABX13071.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13071.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13071.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13071.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: Diphosphate + H(2)O = 2 phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00209}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00209}; CC Note=Binds 4 Mg(2+) ions per subunit. Other metal ions can support CC activity, but at a lower rate. Two Mg(2+) ions are required for CC the activation of the enzyme and are present before substrate CC binds, two additional Mg(2+) ions form complexes with substrate CC and product. {ECO:0000256|HAMAP-Rule:MF_00209}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00209}. CC -!- SIMILARITY: Belongs to the PPase family. {ECO:0000256|HAMAP- CC Rule:MF_00209}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13071.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5R6; -. DR STRING; 436308.Nmar_1175; -. DR EnsemblBacteria; ABX13071; ABX13071; Nmar_1175. DR KEGG; nmr:Nmar_1175; -. DR eggNOG; arCOG01711; Archaea. DR eggNOG; COG0221; LUCA. DR HOGENOM; HOG000236472; -. DR KO; K01507; -. DR OMA; DGVANYK; -. DR BioCyc; NMAR436308:GI3J-1207-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004427; F:inorganic diphosphatase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006796; P:phosphate-containing compound metabolic process; IEA:InterPro. DR Gene3D; 3.90.80.10; -; 1. DR HAMAP; MF_00209; Inorganic_PPase; 1. DR InterPro; IPR008162; Pyrophosphatase. DR PANTHER; PTHR10286; PTHR10286; 1. DR Pfam; PF00719; Pyrophosphatase; 1. DR SUPFAM; SSF50324; SSF50324; 1. DR PROSITE; PS00387; PPASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00209}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00209, KW ECO:0000313|EMBL:ABX13071.1}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00209}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00209}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT METAL 68 68 Magnesium 1. {ECO:0000256|HAMAP- FT Rule:MF_00209}. FT METAL 73 73 Magnesium 1. {ECO:0000256|HAMAP- FT Rule:MF_00209}. FT METAL 73 73 Magnesium 2. {ECO:0000256|HAMAP- FT Rule:MF_00209}. FT METAL 105 105 Magnesium 1. {ECO:0000256|HAMAP- FT Rule:MF_00209}. SQ SEQUENCE 179 AA; 20499 MW; 47A6D4E10CCD53E2 CRC64; MSKNFWHDIE SGADIPEIIN VVVEIPKGSM NKYEYDKKHN MIKLDRVLFS PFHYPGDYGL VPQTLSEDGD PLDALVLVTN PTYPGILIEA RPIGLLQMKD AGDLDDKIIC VSTNDPRYLH TTDISDIEDH YRSEIAHFFQ VYKDLEGKKV EILGWQSAKE AKSIIVESIK RYKNTLKKF // ID A9A127_NITMS Unreviewed; 913 AA. AC A9A127; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 58. DE SubName: Full=DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABX11988.1}; GN OrderedLocusNames=Nmar_0088 {ECO:0000313|EMBL:ABX11988.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11988.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11988.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11988.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11988.1; -; Genomic_DNA. DR ProteinModelPortal; A9A127; -. DR STRING; 436308.Nmar_0088; -. DR EnsemblBacteria; ABX11988; ABX11988; Nmar_0088. DR KEGG; nmr:Nmar_0088; -. DR eggNOG; arCOG00557; Archaea. DR eggNOG; COG1201; LUCA. DR HOGENOM; HOG000226949; -. DR KO; K03724; -. DR OMA; YARTQSF; -. DR BioCyc; NMAR436308:GI3J-89-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR013701; DEAD/DEAH_assoc. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR017170; Lhr-like_ATP-dep_RNA_helic_prd. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF08494; DEAD_assoc; 1. DR Pfam; PF00271; Helicase_C; 1. DR PIRSF; PIRSF037307; Lhr-like_helic_prd; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX11988.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Helicase {ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX11988.1}; KW Hydrolase {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX11988.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX11988.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 34 212 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 239 395 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. SQ SEQUENCE 913 AA; 103923 MW; D70F1C7AE34B3E4B CRC64; MKDPVLTKQM NPIPESLFEN FGFSNLTEIQ KKASPIILQK KDCLVIAPTG SGKTECSVIP IFSLLKNTKK PGKIKTLYIT PLRALNRDVF RRITKYAHQS ELSIEIRHGD TTQKDRKKIT ENPPDVLITT PETLVILLTQ VKYLDAFSEL EWIVVDEVHE LLSSERGTQL SLSVERLEFN SELPLTKIGL SATVGNFEEA GKFVVGTKRK CEIIRDTSVR KYDVEVKYVD GTISDVAEKI IEHVSNLNLD SPVLLFTNTR GESEFLASIL KEKSIIPIEL HHGSLSKEVR EETEQNLREG KRGIVVCTSS LELGLDIGSV ELVIHYGSPR QVSKLVQRIG RSRHNRNASA KGLIITNNSD DEFEAQAILQ RIQEGSIEEQ KIHDGSLDVL AHHLVGLTMQ IGEISIDKAF DLIKKAYPFR NLKLEELVDV LDLLDSNYLI FFDRTKMTFW KKGRSFKYYF ENLSTIPDIL KFKVFDSVGK KIIGTLDQRF VGDYGDSGNI FVLKGSQWRI LNVDEKSFTV NVEPFRGGGI TVPYWEGENI PIDYKTARKV GNFRSKVRNG SLQLTNKTIE QLNFNEISEE NNVVVESNRS QGSIVIHSCF GTKINSTLST LLSSMLSSML GSVVDSRSDG YRIVLSSRSR ISEKLFLEIL KDDYDLFSMV TASLAGTHNV NWRTWCVAKK FGIVGRGAVY ERKSARFLYE RYAKTALVQE ALRELFHDKY DLKNTDKLLK EIRDDQIHVK WLEVDQFSKL AEPILDHTSK YYSSPANLDK GILDLVKARL EKTKHRLICA RCGKWERVVE TNEVKNILIC PYCKGRQITA TFYSDYDLPK IIRKKHEGKK LTSEEKHKVD RAWKVSSLVE NFGKIAIIVM SGYGVGADTA ARILRNMVDE EHLFKQIYEA ERQYVVTRGF WDS // ID A9A508_NITMS Unreviewed; 90 AA. AC A9A508; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11917.1}; GN OrderedLocusNames=Nmar_0017 {ECO:0000313|EMBL:ABX11917.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11917.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11917.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11917.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11917.1; -; Genomic_DNA. DR EnsemblBacteria; ABX11917; ABX11917; Nmar_0017. DR KEGG; nmr:Nmar_0017; -. DR eggNOG; arCOG08691; Archaea. DR eggNOG; ENOG41111BX; LUCA. DR BioCyc; NMAR436308:GI3J-17-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 90 AA; 10335 MW; 6CDDFE36A17DC558 CRC64; MAIPSDIEDF VEKHIKLMIS QTESYLPFIK VAFPYSNNVS DGVYNLIIGS ALSVFVNQYA MRMKNPTVED FADFGKIALK YRDQVDQFFI // ID A9A1G5_NITMS Unreviewed; 102 AA. AC A9A1G5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 50. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX13144.1}; GN OrderedLocusNames=Nmar_1248 {ECO:0000313|EMBL:ABX13144.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13144.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13144.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13144.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13144.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G5; -. DR STRING; 436308.Nmar_1248; -. DR EnsemblBacteria; ABX13144; ABX13144; Nmar_1248. DR KEGG; nmr:Nmar_1248; -. DR eggNOG; arCOG02391; Archaea. DR eggNOG; COG0784; LUCA. DR HOGENOM; HOG000034820; -. DR KO; K02490; -. DR BioCyc; NMAR436308:GI3J-1281-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 99 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 102 AA; 11731 MW; 83A04238D0E15566 CRC64; MLMDEGYDVI PAINGEDGIT KFRESKPDIV FLDIKMPGID GYEAFFRIKK IDSDAKIVFA SSYALENEKY KKAKEMDLCG IINKPADFDE YEKMIKKYAK ND // ID A9A1W5_NITMS Unreviewed; 184 AA. AC A9A1W5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 37. DE SubName: Full=Methyltransferase type 11 {ECO:0000313|EMBL:ABX12086.1}; GN OrderedLocusNames=Nmar_0190 {ECO:0000313|EMBL:ABX12086.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12086.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12086.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12086.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12086.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1W5; -. DR STRING; 436308.Nmar_0190; -. DR EnsemblBacteria; ABX12086; ABX12086; Nmar_0190. DR KEGG; nmr:Nmar_0190; -. DR eggNOG; arCOG01773; Archaea. DR eggNOG; COG0500; LUCA. DR HOGENOM; HOG000108792; -. DR OMA; VEMHEDI; -. DR BioCyc; NMAR436308:GI3J-193-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12086.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12086.1}. SQ SEQUENCE 184 AA; 21662 MW; 17A55D8A77672CDA CRC64; MNYDESFWRK YADENESRYN EEFAKFTKDL AISLRCTSVL EIGCGTGIDL RLFPDTFQIH GVDLNEYALD MAKEKFPVAN FKKGSITDLP FEDSSIDFVF THGLLNYLDE DILEKGISEM YRVAGKYVMN CEKYSNIEEK IDENQTSRNM VKRWMNYKVR IVSDVDMHED IEPEKKRFVL LKKI // ID A9A4K6_NITMS Unreviewed; 397 AA. AC A9A4K6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=AAA ATPase central domain protein {ECO:0000313|EMBL:ABX12984.1}; GN OrderedLocusNames=Nmar_1088 {ECO:0000313|EMBL:ABX12984.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12984.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12984.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12984.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12984.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4K6; -. DR STRING; 436308.Nmar_1088; -. DR EnsemblBacteria; ABX12984; ABX12984; Nmar_1088. DR KEGG; nmr:Nmar_1088; -. DR eggNOG; arCOG01307; Archaea. DR eggNOG; COG0464; LUCA. DR HOGENOM; HOG000225146; -. DR OMA; ATIMSKW; -. DR BioCyc; NMAR436308:GI3J-1119-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR Gene3D; 1.20.58.280; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR007330; MIT. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR015415; Vps4_C. DR Pfam; PF00004; AAA; 1. DR Pfam; PF04212; MIT; 1. DR Pfam; PF09336; Vps4_C; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00745; MIT; 1. DR SUPFAM; SSF116846; SSF116846; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 148 289 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 397 AA; 44804 MW; EE7E2DAED02D4CDA CRC64; MSMAPQELEN TASKYASEAI KFDSQGARGQ AITYYQQAID ALVKLLQLYP NSKLNPIYKE RCNSYHNRIN ALQQAHGVEP AVDPKASEEE QKKSVQRQEA ENDFEDLIMK EKPDVTWDQV IGLDDAKSAL RESIVYPTKR PDLFPLGWPK GMLLYGPPGT GKTMLAAATA NEMDGYFINV DASSMMSKWL GEAEKNVSKL FSMARSYAEK EGKPVILFVD EVDSLLGSRS SEVGGEVRTK NQFLTEMDGV NGKGKDLMMY VIGATNKPWA LDWPFLRRFQ KRIYVSLPTQ AARENLFDQY TAKLSKDSRV STTDLAKLFD GYSASDIKDV CQAAQIKTVH EIFDSPDYHE PVEGEEPVQP RELTSTDFKD IMARRKPSVS TEMIRAYHKW SEEFQAL // ID A9A4N2_NITMS Unreviewed; 191 AA. AC A9A4N2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Phosphoribosylglycinamide formyltransferase {ECO:0000313|EMBL:ABX13010.1}; GN OrderedLocusNames=Nmar_1114 {ECO:0000313|EMBL:ABX13010.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13010.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13010.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13010.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13010.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N2; -. DR STRING; 436308.Nmar_1114; -. DR EnsemblBacteria; ABX13010; ABX13010; Nmar_1114. DR KEGG; nmr:Nmar_1114; -. DR eggNOG; arCOG02825; Archaea. DR eggNOG; COG0299; LUCA. DR HOGENOM; HOG000033575; -. DR KO; K11175; -. DR OMA; MENRIHE; -. DR BioCyc; NMAR436308:GI3J-1145-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004644; F:phosphoribosylglycinamide formyltransferase activity; IEA:InterPro. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.170; -; 1. DR HAMAP; MF_01930; PurN; 1. DR InterPro; IPR002376; Formyl_transf_N. DR InterPro; IPR001555; GART_AS. DR InterPro; IPR004607; PurN_trans. DR Pfam; PF00551; Formyl_trans_N; 1. DR SUPFAM; SSF53328; SSF53328; 1. DR TIGRFAMs; TIGR00639; PurN; 1. DR PROSITE; PS00373; GART; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13010.1}. FT DOMAIN 2 173 Formyl_trans_N. FT {ECO:0000259|Pfam:PF00551}. SQ SEQUENCE 191 AA; 21304 MW; 62A8BAF95F548C06 CRC64; MESILKSIKK KKIPINPAVV ISNKPDAKGL KIAQKLGVDI EVVESKGFKG SRAEYDKKII SVLTKYGVTP RNGLVCLAGF MRIISPEFVK KYKNRIINIH PALLPSFPGL DAQKQALEYG AKFSGCTVHF VDAGMDTGPV IIQSIVKVKE NDTEKSLSKR ILKEEHRIYP EAVNLFARKK IKVTDRRTKI S // ID A9A178_NITMS Unreviewed; 119 AA. AC A9A178; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=TPR repeat-containing protein {ECO:0000313|EMBL:ABX12364.1}; GN OrderedLocusNames=Nmar_0468 {ECO:0000313|EMBL:ABX12364.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12364.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12364.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12364.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12364.1; -; Genomic_DNA. DR ProteinModelPortal; A9A178; -. DR STRING; 436308.Nmar_0468; -. DR EnsemblBacteria; ABX12364; ABX12364; Nmar_0468. DR KEGG; nmr:Nmar_0468; -. DR eggNOG; arCOG03032; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000023835; -. DR BioCyc; NMAR436308:GI3J-488-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR SMART; SM00028; TPR; 2. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 2. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 39 106 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 119 AA; 13806 MW; C681977A94198891 CRC64; MVGLFKHPKR KIRKLTAQGN YEDAIKLGKS LESEYSDDSD FMFIMGSVYF LVDEPKNALP YFEKAFQLNS DDLEMLRLKT NVHLALEQKS EAIDCCEHIL KIDPKNDEAH DLLDQLERL // ID A9A1B6_NITMS Unreviewed; 79 AA. AC A9A1B6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12751.1}; GN OrderedLocusNames=Nmar_0855 {ECO:0000313|EMBL:ABX12751.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12751.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12751.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12751.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12751.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0855; -. DR EnsemblBacteria; ABX12751; ABX12751; Nmar_0855. DR KEGG; nmr:Nmar_0855; -. DR eggNOG; arCOG08032; Archaea. DR eggNOG; ENOG41111FU; LUCA. DR HOGENOM; HOG000107210; -. DR OMA; ADICVIM; -. DR BioCyc; NMAR436308:GI3J-882-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 79 AA; 8834 MW; 6D812C08A48B87FA CRC64; MRALCLITVK PGKVDTVVQI LKKKRKIVKQ VMVVTGRADI SVLLQGGIDD INNMVIDFKK IKDIVTTETL IEVEVNLGW // ID A9A403_NITMS Unreviewed; 368 AA. AC A9A403; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Peptidase M50 {ECO:0000313|EMBL:ABX12187.1}; GN OrderedLocusNames=Nmar_0291 {ECO:0000313|EMBL:ABX12187.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12187.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12187.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12187.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12187.1; -; Genomic_DNA. DR ProteinModelPortal; A9A403; -. DR STRING; 436308.Nmar_0291; -. DR EnsemblBacteria; ABX12187; ABX12187; Nmar_0291. DR KEGG; nmr:Nmar_0291; -. DR eggNOG; arCOG00609; Archaea. DR eggNOG; COG0750; LUCA. DR HOGENOM; HOG000109774; -. DR OMA; LTINREI; -. DR BioCyc; NMAR436308:GI3J-303-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR InterPro; IPR008915; Peptidase_M50. DR Pfam; PF02163; Peptidase_M50; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 104 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 124 143 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 155 172 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 184 208 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 254 278 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 298 322 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 343 360 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 254 309 Peptidase_M50. FT {ECO:0000259|Pfam:PF02163}. SQ SEQUENCE 368 AA; 40892 MW; 8E7C5D40863ED929 CRC64; MDEESQDDII SLVNSIFDVS DFIKTEFSME FRIEDIEFKS KFEKLARRLE GMSFACRLEQ KDGGKFVIIQ KFAIKKQRRW MKTAWTPRAL FAIVVAFVMV DGYYRTSGTN SIVEIGEPLE MAAVYTLSLL GILGIHELGH IIAAKAHRLK TTWPYFIPGL PVIGIPTFGA FIQSRGLTIN REILFDVAIA GPIAGLVIAV IVSIYGAYTA PILEPEIAAG LFEESRLMEW EQGEPLLMTA SLAMFGKGGS GHEVIMTPIM FAAWIGFLIT FLNLLPAWQL DGGHMARTLL GPKLHRYATF GSMAILVLLN YWLMAILILI MSSRNPSAMP LDDISPLSRN RKLAYIGIIG LAILCAPLPS DFLPNFLP // ID A9A368_NITMS Unreviewed; 297 AA. AC A9A368; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 64. DE RecName: Full=Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01975, ECO:0000256|RuleBase:RU003653}; DE Short=MAP {ECO:0000256|HAMAP-Rule:MF_01975}; DE Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01975}; DE EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01975, ECO:0000256|RuleBase:RU003653}; DE AltName: Full=Peptidase M {ECO:0000256|HAMAP-Rule:MF_01975}; GN Name=map {ECO:0000256|HAMAP-Rule:MF_01975}; GN OrderedLocusNames=Nmar_0601 {ECO:0000313|EMBL:ABX12497.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12497.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12497.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12497.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Removes the N-terminal methionine from nascent proteins. CC The N-terminal methionine is often cleaved when the second residue CC in the primary sequence is small and uncharged (Met-Ala-, Cys, CC Gly, Pro, Ser, Thr, or Val). {ECO:0000256|HAMAP-Rule:MF_01975, CC ECO:0000256|RuleBase:RU003653}. CC -!- CATALYTIC ACTIVITY: Release of N-terminal amino acids, CC preferentially methionine, from peptides and arylamides. CC {ECO:0000256|HAMAP-Rule:MF_01975, ECO:0000256|RuleBase:RU003653}. CC -!- COFACTOR: CC Name=Co(2+); Xref=ChEBI:CHEBI:48828; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01975, CC ECO:0000256|RuleBase:RU003653}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01975, CC ECO:0000256|RuleBase:RU003653}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01975, CC ECO:0000256|RuleBase:RU003653}; CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01975, CC ECO:0000256|RuleBase:RU003653}; CC Note=Binds 2 divalent metal cations per subunit. Has a high- CC affinity and a low affinity metal-binding site. The true nature of CC the physiological cofactor is under debate. The enzyme is active CC with cobalt, zinc, manganese or divalent iron ions. Most likely, CC methionine aminopeptidases function as mononuclear Fe(2+)- CC metalloproteases under physiological conditions, and the CC catalytically relevant metal-binding site has been assigned to the CC histidine-containing high-affinity site. {ECO:0000256|HAMAP- CC Rule:MF_01975, ECO:0000256|RuleBase:RU003653}; CC -!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_01975}. CC -!- SIMILARITY: Belongs to the peptidase M24A family. Methionine CC aminopeptidase archaeal type 2 subfamily. {ECO:0000256|HAMAP- CC Rule:MF_01975}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12497.1; -; Genomic_DNA. DR ProteinModelPortal; A9A368; -. DR STRING; 436308.Nmar_0601; -. DR EnsemblBacteria; ABX12497; ABX12497; Nmar_0601. DR KEGG; nmr:Nmar_0601; -. DR eggNOG; arCOG01001; Archaea. DR eggNOG; COG0024; LUCA. DR HOGENOM; HOG000226277; -. DR KO; K01265; -. DR OMA; PSIPNRH; -. DR BioCyc; NMAR436308:GI3J-624-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0070006; F:metalloaminopeptidase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0070084; P:protein initiator methionine removal; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.90.230.10; -; 2. DR HAMAP; MF_01975; MetAP_2_arc; 1. DR InterPro; IPR028595; MetAP_archaeal. DR InterPro; IPR001714; Pept_M24_MAP. DR InterPro; IPR000994; Pept_M24_structural-domain. DR InterPro; IPR002468; Pept_M24A_MAP2. DR InterPro; IPR018349; Pept_M24A_MAP2_BS. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR PANTHER; PTHR10804:SF9; PTHR10804:SF9; 1. DR Pfam; PF00557; Peptidase_M24; 1. DR PRINTS; PR00599; MAPEPTIDASE. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF55920; SSF55920; 2. DR TIGRFAMs; TIGR00501; met_pdase_II; 1. DR PROSITE; PS01202; MAP_2; 1. PE 3: Inferred from homology; KW Aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01975, KW ECO:0000256|RuleBase:RU003653, ECO:0000313|EMBL:ABX12497.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_01975, KW ECO:0000256|RuleBase:RU003653, ECO:0000313|EMBL:ABX12497.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01975, KW ECO:0000256|RuleBase:RU003653}; KW Protease {ECO:0000256|HAMAP-Rule:MF_01975, KW ECO:0000256|RuleBase:RU003653, ECO:0000313|EMBL:ABX12497.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 195 Peptidase_M24. FT {ECO:0000259|Pfam:PF00557}. FT METAL 82 82 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_01975}. FT METAL 93 93 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_01975}. FT METAL 93 93 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_01975}. FT METAL 153 153 Divalent metal cation 2; catalytic; via FT tele nitrogen. {ECO:0000256|HAMAP- FT Rule:MF_01975}. FT METAL 186 186 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_01975}. FT METAL 281 281 Divalent metal cation 1. FT {ECO:0000256|HAMAP-Rule:MF_01975}. FT METAL 281 281 Divalent metal cation 2; catalytic. FT {ECO:0000256|HAMAP-Rule:MF_01975}. FT BINDING 62 62 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01975}. FT BINDING 161 161 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01975}. SQ SEQUENCE 297 AA; 33004 MW; 8AF2788D7EC8C521 CRC64; MQTEEYIKAG KIASEVREMV RVKDWVGKTV YEICEWVEDE IRKRGAKCAF PVNTSINEVA AHYTAEPNDP ITIKDTDLIK IDLGAQINGY IADTAVTVCY DPQYDGLVQA AEEGLANAMS MIKAGVKASD IGRTIETTIK QMGYKPIANL SGHSLEQYTI HAGKSIPNIW SIGGFSLSEN SAYACEPFVT TSEGGGFVRN GQIKNIFAIN SRKKTKNAEA DKLLDYIWEN FNMLPFALRW ITKDRDEKEA KDLLDILVKK KAVQAYPVLI EVNEQRVAQA EHTFIPTEDG VTVTTKA // ID A9A5B9_NITMS Unreviewed; 471 AA. AC A9A5B9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE SubName: Full=3-isopropylmalate dehydratase, large subunit {ECO:0000313|EMBL:ABX12318.1}; DE EC=4.2.1.33 {ECO:0000313|EMBL:ABX12318.1}; GN OrderedLocusNames=Nmar_0422 {ECO:0000313|EMBL:ABX12318.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12318.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12318.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12318.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12318.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0422; -. DR EnsemblBacteria; ABX12318; ABX12318; Nmar_0422. DR KEGG; nmr:Nmar_0422; -. DR eggNOG; arCOG01698; Archaea. DR eggNOG; COG0065; LUCA. DR HOGENOM; HOG000226972; -. DR KO; K01703; -. DR OMA; CNMSIEM; -. DR BioCyc; NMAR436308:GI3J-440-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003861; F:3-isopropylmalate dehydratase activity; IEA:UniProtKB-EC. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro. DR GO; GO:0009098; P:leucine biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.499.10; -; 2. DR Gene3D; 3.40.1060.10; -; 1. DR HAMAP; MF_01026; LeuC_type1; 1. DR InterPro; IPR004430; 3-IsopropMal_deHydase_lsu. DR InterPro; IPR015931; Acnase/IPM_dHydase_lsu_aba_1/3. DR InterPro; IPR015937; Acoase/IPM_deHydtase. DR InterPro; IPR001030; Acoase/IPM_deHydtase_lsu_aba. DR InterPro; IPR015932; Aconitase/IPMdHydase_lsu_aba_2. DR InterPro; IPR018136; Aconitase_4Fe-4S_BS. DR PANTHER; PTHR11670; PTHR11670; 2. DR Pfam; PF00330; Aconitase; 1. DR PRINTS; PR00415; ACONITASE. DR SUPFAM; SSF53732; SSF53732; 1. DR TIGRFAMs; TIGR00170; leuC; 1. DR PROSITE; PS00450; ACONITASE_1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12318.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 460 Aconitase. {ECO:0000259|Pfam:PF00330}. SQ SEQUENCE 471 AA; 51794 MW; 28EDB944EF02EAE4 CRC64; MGKTLFEKIW DAHVVVGKEN GPSLIYIDRH LVHEVTSPQA FDGLRMNNRK VRRPDLTIAT MDHNVPTTDR GLPILDQTSS VQIQTLEKNC QDFGIKLFDI NSPNQGIVHV IGPQLGITLP GSTIVCGDSH TSTHGAFGAL AFGIGTSEVE HVLASQTLWL EKPKPFEIRV EGKRKNPHAV TAKDIVLSII KNIGTGGGTG TVIEYRGEGI EDLSMEQRMT ICNMSIEAGA RAGLIAPDEK TYDYLRDRQY TPKNYESLVE YWRENLKSDD DAKFEKQFTL HIDDIAPQVS WGTNPGMTCD VTETVPTPDE FSKGDSNQKK GAEKALDYMD LKSGTPIEEI KIDRVFIGSC TNARLEDLIE ASKVVKGQKV SPDVRAMVVP GSQMVKKQAE EMGLDKIFTN ANFEWREAGC SMCLGMNPDI LSPGERCAST SNRNFEGRQG TGGRTHLVSP VMAAAAAING HFVDVRKMDL S // ID A9A642_NITMS Unreviewed; 150 AA. AC A9A642; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE RecName: Full=30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; GN Name=rps19e {ECO:0000256|HAMAP-Rule:MF_01474}; GN OrderedLocusNames=Nmar_1624 {ECO:0000313|EMBL:ABX13520.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13520.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13520.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13520.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: May be involved in maturation of the 30S ribosomal CC subunit. {ECO:0000256|HAMAP-Rule:MF_01474}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01474}. CC -!- SIMILARITY: Belongs to the ribosomal protein S19e family. CC {ECO:0000256|HAMAP-Rule:MF_01474}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13520.1; -; Genomic_DNA. DR ProteinModelPortal; A9A642; -. DR STRING; 436308.Nmar_1624; -. DR EnsemblBacteria; ABX13520; ABX13520; Nmar_1624. DR KEGG; nmr:Nmar_1624; -. DR eggNOG; arCOG01344; Archaea. DR eggNOG; COG2238; LUCA. DR HOGENOM; HOG000230649; -. DR KO; K02966; -. DR OMA; DNWFYTR; -. DR BioCyc; NMAR436308:GI3J-1668-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01474; Ribosomal_S19e; 1. DR InterPro; IPR001266; Ribosomal_S19e. DR InterPro; IPR027548; Ribosomal_S19e_archaeal. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR PANTHER; PTHR11710; PTHR11710; 1. DR Pfam; PF01090; Ribosomal_S19e; 1. DR ProDom; PD003854; Ribosomal_S19e; 1. DR SMART; SM01413; Ribosomal_S19e; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01474, KW ECO:0000313|EMBL:ABX13520.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01474, KW ECO:0000313|EMBL:ABX13520.1}. SQ SEQUENCE 150 AA; 16733 MW; 5BA73F2F30EA3A74 CRC64; MAKVYDVPAD VLIGKLAEIL KNEDIPAPSW IPFVKTGAHA DKPPQNRDWW HTRCASIMRK IYLHGPIGIN ELRKDYGGGK PSGYGAAHHK DAGGAIIRNA IHGLEKLGYL EKVEKKGRIV SKQGMQKLDR LATEILKEMI VENPQLKVYT // ID A9A223_NITMS Unreviewed; 145 AA. AC A9A223; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE SubName: Full=GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABX12436.1}; GN OrderedLocusNames=Nmar_0540 {ECO:0000313|EMBL:ABX12436.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12436.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12436.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12436.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12436.1; -; Genomic_DNA. DR ProteinModelPortal; A9A223; -. DR STRING; 436308.Nmar_0540; -. DR EnsemblBacteria; ABX12436; ABX12436; Nmar_0540. DR KEGG; nmr:Nmar_0540; -. DR eggNOG; arCOG00826; Archaea. DR eggNOG; COG0454; LUCA. DR HOGENOM; HOG000106325; -. DR KO; K00621; -. DR OMA; IEHENRI; -. DR BioCyc; NMAR436308:GI3J-562-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008080; F:N-acetyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR000182; GNAT_dom. DR Pfam; PF13673; Acetyltransf_10; 1. DR SUPFAM; SSF55729; SSF55729; 1. DR PROSITE; PS51186; GNAT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12436.1}. FT DOMAIN 4 145 N-acetyltransferase. FT {ECO:0000259|PROSITE:PS51186}. SQ SEQUENCE 145 AA; 16466 MW; 79DB475267E0833A CRC64; MSESTIRKLR IEDLDNGFLT SLDSLRKASD IDKNKAKEIF KKIDSNPDYT IAVAEIEGKI VGSTTLLIEQ KFIHQGGLVG HIEDVVVDKN FQGQKIGEKI MKYLLEIAKN QGCYKTILDC TDDVKPFYEK LGFKQVANEL RFDHI // ID A9A517_NITMS Unreviewed; 269 AA. AC A9A517; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE SubName: Full=Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX11926.1}; GN OrderedLocusNames=Nmar_0026 {ECO:0000313|EMBL:ABX11926.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11926.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11926.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11926.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11926.1; -; Genomic_DNA. DR ProteinModelPortal; A9A517; -. DR STRING; 436308.Nmar_0026; -. DR EnsemblBacteria; ABX11926; ABX11926; Nmar_0026. DR KEGG; nmr:Nmar_0026; -. DR eggNOG; arCOG01259; Archaea. DR eggNOG; COG1028; LUCA. DR OMA; WVFISPE; -. DR BioCyc; NMAR436308:GI3J-26-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020904; Sc_DH/Rdtase_CS. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 2. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00061; ADH_SHORT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 269 AA; 29439 MW; D593C21DA570BF4C CRC64; MKYFIPILKK SIYKLRIFLL KILSLSGKVA LVTGGSRGIG FATAKVLSEN GANVAITGKV QERLEKVSSE ISNSFAIVAD VRKTEDVKNA IKKIVEKFGR LDILVNNAGV FPKIKKLHEI DDEEWNEVLD VNLTGQFRVT KEAIPHLQKT SGSIINISSD AGLKAYQGFN ADAYSATKAA LIVLTKCWAL EYSKDKIRVN CICPGVVDTD MTKPFVKTQK DRDFMNAEHP LGRIGEPEEV AKAVLYFASD DAAWTTGAIL AVDGGESTK // ID A9A4J6_NITMS Unreviewed; 331 AA. AC A9A4J6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ABX12974.1}; DE EC=4.1.2.13 {ECO:0000313|EMBL:ABX12974.1}; GN OrderedLocusNames=Nmar_1078 {ECO:0000313|EMBL:ABX12974.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12974.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12974.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12974.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12974.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4J6; -. DR STRING; 436308.Nmar_1078; -. DR EnsemblBacteria; ABX12974; ABX12974; Nmar_1078. DR KEGG; nmr:Nmar_1078; -. DR eggNOG; arCOG04044; Archaea. DR eggNOG; COG1830; LUCA. DR HOGENOM; HOG000224792; -. DR KO; K08321; -. DR OMA; GRNVIQH; -. DR BioCyc; NMAR436308:GI3J-1109-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004332; F:fructose-bisphosphate aldolase activity; IEA:UniProtKB-EC. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR002915; DeoC/FbaB/lacD_aldolase. DR Pfam; PF01791; DeoC; 1. DR SMART; SM01133; DeoC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12974.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 331 AA; 36404 MW; 5B0D549F1FC0DACC CRC64; MDWGLKNRLS SIIKPHNNRA LMLAVDHGYF LGPTERLENP KKVIAPLLKH CDSLMLTRGV QRTSVPAETD TPMVLRVSGG SSIIGDDLSQ EDITVSIQDA IRLNASALAM SIFVGSKYEY QTVVNLGKLV SEAEQYGIPV LAVTAVGKEL GKDARYLSLA CRMAAEQGAH IVKTYYCDNF EKVVESCPVP IIVAGGKKIP ERDALQLTYN AVKAGAVGVD MGRNIWQSDH PVAMIRATRA IIHQNANVDQ AFKLYKKLAN EDSNKKQKSK GKKPNQNKSK GKNPNQNKTK GKKPNQNKSK GKNPNQNKTK GKKPNQNKSN KPQNKPQPKK N // ID A9A3H4_NITMS Unreviewed; 126 AA. AC A9A3H4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12906.1}; GN OrderedLocusNames=Nmar_1010 {ECO:0000313|EMBL:ABX12906.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12906.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12906.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12906.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12906.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1010; -. DR EnsemblBacteria; ABX12906; ABX12906; Nmar_1010. DR KEGG; nmr:Nmar_1010; -. DR eggNOG; arCOG07473; Archaea. DR eggNOG; ENOG410Y4MB; LUCA. DR BioCyc; NMAR436308:GI3J-1038-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 39 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 59 81 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 126 AA; 13954 MW; B64ABF3BBE331242 CRC64; MSFFMADEPE STSIKHEILD KIAALIAAAF GLVAALAWNE AIKALFREYF GPTDQVGPMI VYAIIVTMIA VVLTIFVARA ASQAKALLGK RDYRCALCNF KTYVEAEFME HLSKEHSASD DKFISK // ID A9A650_NITMS Unreviewed; 152 AA. AC A9A650; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 36. DE SubName: Full=DNA topoisomerase type IA zn finger domain protein {ECO:0000313|EMBL:ABX13528.1}; GN OrderedLocusNames=Nmar_1632 {ECO:0000313|EMBL:ABX13528.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13528.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13528.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13528.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13528.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1632; -. DR EnsemblBacteria; ABX13528; ABX13528; Nmar_1632. DR KEGG; nmr:Nmar_1632; -. DR eggNOG; arCOG10412; Archaea. DR eggNOG; ENOG41111RK; LUCA. DR OMA; CANRECD; -. DR BioCyc; NMAR436308:GI3J-1677-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003916; F:DNA topoisomerase activity; IEA:InterPro. DR GO; GO:0006265; P:DNA topological change; IEA:InterPro. DR InterPro; IPR013498; Topo_IA_Znf. DR Pfam; PF01396; zf-C4_Topoisom; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX13528.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 67 94 zf-C4_Topoisom. FT {ECO:0000259|Pfam:PF01396}. SQ SEQUENCE 152 AA; 17456 MW; C0B263A72B8A2F09 CRC64; MPSKKLQTVQ IKKTVVRHSV KTTKSKTSIF KKEIIQYLDG NGYLSWSSKD KKYMILGTNS PKNGLVQCPE CKVGELMVIR SRTTRKRFMG CSNFYGGCKA SSPLLQKAKL RATKSPCEVC KWPMVIFRYS RKQQWSKQCS NFNCKSRIKP SK // ID A9A1Z5_NITMS Unreviewed; 341 AA. AC A9A1Z5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX12408.1}; GN OrderedLocusNames=Nmar_0512 {ECO:0000313|EMBL:ABX12408.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12408.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12408.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12408.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH asnC-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000704}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12408.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Z5; -. DR STRING; 436308.Nmar_0512; -. DR EnsemblBacteria; ABX12408; ABX12408; Nmar_0512. DR KEGG; nmr:Nmar_0512; -. DR eggNOG; arCOG01628; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000019140; -. DR OMA; MHAPEER; -. DR BioCyc; NMAR436308:GI3J-533-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR019885; Tscrpt_reg_HTH_AsnC-type_CS. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS00519; HTH_ASNC_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000704}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000704}; KW Transcription regulation {ECO:0000256|RuleBase:RU000704}. SQ SEQUENCE 341 AA; 39807 MW; 5762EB7F99CB9474 CRC64; MTSMDELDKE LLNEIQWTFP LVTRPFDAIA KKFNTTPEIV KERLNQLKEI GVLRQLSAIF DTRKLGYTSS LVAMEIEHDK LEYVASQINR HPGVSHNYER DHQFNLWFTL AVPPGSDLKT ELDKFNVLKG IKKVRMLPTL QLFKIGVKLD MVDEKKHDVA PTEEKKEIKN VKFEPTEEDK DFIRELQKDM DVIDEPFVKA ANNLGMTENE LFEKMKHYEE IGVMRRFAAI LRHRQVGFTA NGMIVWKVPE DKITDVGAQL GAFPQVSHCY ERPTYPDWPY NVFSMIHCKT HDEANEMAKT IQDQIHVDDY RILFSSREFK KTRVEYFVEN SFSLEETVPA S // ID A9A459_NITMS Unreviewed; 1115 AA. AC A9A459; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 56. DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000256|RuleBase:RU363031}; DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU363031}; GN OrderedLocusNames=Nmar_0347 {ECO:0000313|EMBL:ABX12243.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12243.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12243.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12243.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription CC of DNA into RNA using the four ribonucleoside triphosphates as CC substrates. {ECO:0000256|RuleBase:RU363031}. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). {ECO:0000256|RuleBase:RU363031}. CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family. CC {ECO:0000256|RuleBase:RU000434}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12243.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0347; -. DR EnsemblBacteria; ABX12243; ABX12243; Nmar_0347. DR KEGG; nmr:Nmar_0347; -. DR eggNOG; arCOG01762; Archaea. DR eggNOG; COG0085; LUCA. DR HOGENOM; HOG000222962; -. DR KO; K13798; -. DR OMA; RTQPHFE; -. DR BioCyc; NMAR436308:GI3J-362-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR Gene3D; 2.40.270.10; -; 2. DR Gene3D; 2.40.50.150; -; 1. DR Gene3D; 3.90.1110.10; -; 1. DR InterPro; IPR015712; DNA-dir_RNA_pol_su2. DR InterPro; IPR007120; DNA-dir_RNA_pol_su2_6. DR InterPro; IPR007121; RNA_pol_bsu_CS. DR InterPro; IPR007644; RNA_pol_bsu_protrusion. DR InterPro; IPR007642; RNA_pol_Rpb2_2. DR InterPro; IPR007645; RNA_pol_Rpb2_3. DR InterPro; IPR007646; RNA_pol_Rpb2_4. DR InterPro; IPR007647; RNA_pol_Rpb2_5. DR InterPro; IPR007641; RNA_pol_Rpb2_7. DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold. DR InterPro; IPR019969; RNAP_B. DR PANTHER; PTHR20856; PTHR20856; 1. DR Pfam; PF04563; RNA_pol_Rpb2_1; 1. DR Pfam; PF04561; RNA_pol_Rpb2_2; 1. DR Pfam; PF04565; RNA_pol_Rpb2_3; 1. DR Pfam; PF04566; RNA_pol_Rpb2_4; 1. DR Pfam; PF04567; RNA_pol_Rpb2_5; 1. DR Pfam; PF00562; RNA_pol_Rpb2_6; 1. DR Pfam; PF04560; RNA_pol_Rpb2_7; 1. DR TIGRFAMs; TIGR03670; rpoB_arch; 1. DR PROSITE; PS01166; RNA_POL_BETA; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU363031}; KW Nucleotidyltransferase {ECO:0000256|RuleBase:RU363031}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU363031}; KW Transferase {ECO:0000256|RuleBase:RU363031}. FT DOMAIN 21 387 RNA_pol_Rpb2_1. FT {ECO:0000259|Pfam:PF04563}. FT DOMAIN 170 343 RNA_pol_Rpb2_2. FT {ECO:0000259|Pfam:PF04561}. FT DOMAIN 412 473 RNA_pol_Rpb2_3. FT {ECO:0000259|Pfam:PF04565}. FT DOMAIN 511 577 RNA_pol_Rpb2_4. FT {ECO:0000259|Pfam:PF04566}. FT DOMAIN 598 635 RNA_pol_Rpb2_5. FT {ECO:0000259|Pfam:PF04567}. FT DOMAIN 645 1018 RNA_pol_Rpb2_6. FT {ECO:0000259|Pfam:PF00562}. FT DOMAIN 1020 1110 RNA_pol_Rpb2_7. FT {ECO:0000259|Pfam:PF04560}. SQ SEQUENCE 1115 AA; 124591 MW; EF36C8D569CE8010 CRC64; MADSSTKRWP VIQDILKREG IARQHLNSFD EFLERGLQSI INEVGQIDIE NAEYPYKIQL GKVKLQQPRM MELDGSITHI TPAEARLRNV SYSAPVMMEA SVVEDGKILE SRFVHIGDVP VMAKSNACIL HNFSTQKLVE HGEDPNDPGG YFIINGSERV IVGLEDLSYN KIIVDRETVG GNIVHKAKVY SSIVGYRAKL ELVMKNDGLI VARIPGSPVD IPVVTLMRAL GLESDREIAA AVSLVDELQD ELEASFEKAG DVPTAKDAIV YISKRIAPGM LEEFQIKRAE TLLDWGLLPH LGKHPENRKE KAQFLGEAAC KLLELKLDWI RPDDKDHYGN KVIKFAGQML ADLFRTAFRN LVRDMKYQLE RSGQKRGINA VAAAIRPGII TDKLNNAIAT GNWGRGRVGV TQLLDRTNYL STISHLRRIQ SPLSRTQPNF EARDLHATHF GRICPSETPE GSNCGLVKNL ALSGIISVNV PSEEIVEKLY DLGTVHFFDA KEDLKKDGTR IFVDGRLIGY YKDGEQLAES LRDLRRNSKI HPHVGVSFHK SEIEGSTRRL YVNCNAGRVL RPLIIIKDNK PLLTADLLDK ISKKLISWTD LLRMGVLEMI DANEEENCYV TLDEKDTKKH THLEVFPPAI LGAGASIIPY PEHNQSPRNT YESAMAKQSL GFSTPMMNTS TYVRQHFMLY PQVPIVNTKA MKLLGLEDRP AGQNCVVAVL PFDGYNIEDA IVLSKASVDR GLGRTFFFRI YDAEAKQYPG GMRDAFEIPN AEDNIRGYKG ERAYRLLEED GVVATEAPVK GGDILIGKTS PPRFMEEYRE FESSGPYRRD TSIGVRPSET GVVDTVVMTQ SNEGGKMYKI RARDMRIPEI GDKFASRHGQ KGVLGILAKA EDLPYTASGM SPDVLINPHA FPSRMTVGMM MESICGKSAA LRGKRFDGSA FVGEKMDEVR EVMDAHGFEY SGKEIMYDGR TGKSFPVEVF IGVVYYQKLH HMVADKIHAR ARGQVQMLTK QPTEGRARGG GLRFGEMERD CLIAYGASMI LKDRLLDESD KSDIFVCERC GLVAYHDVKQ RKYVCRVCGD KAKVSSVSVA YAFKLLLQEM QSLNVAPRLL IKEKL // ID A9A605_NITMS Unreviewed; 124 AA. AC A9A605; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13483.1}; GN OrderedLocusNames=Nmar_1587 {ECO:0000313|EMBL:ABX13483.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13483.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13483.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13483.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH asnC-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000704}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13483.1; -; Genomic_DNA. DR ProteinModelPortal; A9A605; -. DR STRING; 436308.Nmar_1587; -. DR EnsemblBacteria; ABX13483; ABX13483; Nmar_1587. DR KEGG; nmr:Nmar_1587; -. DR eggNOG; arCOG01580; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000115326; -. DR KO; K03718; -. DR BioCyc; NMAR436308:GI3J-1631-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000704}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000704}; KW Transcription regulation {ECO:0000256|RuleBase:RU000704}. FT DOMAIN 41 109 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 124 AA; 14249 MW; A012DB17BAED4DB6 CRC64; MNSSVVYSRI KRLVKRKLIE RFTIVVNDAE LGYNVKALTG INMDTKKRDH IISELFKIDG VREVAEVTGR FDILVTMYSK SLDQMHKMVS ERIGRIEGIQ SSESFIEMKS RAKAMPYMPS KDSD // ID A9A4Z2_NITMS Unreviewed; 400 AA. AC A9A4Z2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 62. DE RecName: Full=ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; GN OrderedLocusNames=Nmar_0001 {ECO:0000313|EMBL:ABX11901.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11901.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11901.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11901.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in regulation of DNA replication. CC {ECO:0000256|HAMAP-Rule:MF_01407, ECO:0000256|SAAS:SAAS00552624}. CC -!- SIMILARITY: Belongs to the CDC6/cdc18 family. {ECO:0000256|HAMAP- CC Rule:MF_01407, ECO:0000256|SAAS:SAAS00552177}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11901.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Z2; -. DR STRING; 436308.Nmar_0001; -. DR EnsemblBacteria; ABX11901; ABX11901; Nmar_0001. DR KEGG; nmr:Nmar_0001; -. DR eggNOG; arCOG00467; Archaea. DR eggNOG; COG1474; LUCA. DR HOGENOM; HOG000230140; -. DR KO; K10725; -. DR OMA; TGWPTDQ; -. DR BioCyc; NMAR436308:GI3J-1-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01407; ORC1_type_DNA_replic_protein; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR015163; Cdc6_C. DR InterPro; IPR007111; NACHT_NTPase. DR InterPro; IPR014277; Orc1/Cdc6_arc. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF13401; AAA_22; 1. DR Pfam; PF09079; Cdc6_C; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM01074; Cdc6_C; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR02928; TIGR02928; 1. DR PROSITE; PS50837; NACHT; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01407, KW ECO:0000256|SAAS:SAAS00437260}; KW Cell cycle {ECO:0000313|EMBL:ABX11901.1}; KW Cell division {ECO:0000313|EMBL:ABX11901.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA replication {ECO:0000256|HAMAP-Rule:MF_01407, KW ECO:0000256|SAAS:SAAS00438025}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01407, KW ECO:0000256|SAAS:SAAS00437260}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 58 177 NACHT. {ECO:0000259|PROSITE:PS50837}. FT NP_BIND 68 72 ATP. {ECO:0000256|HAMAP-Rule:MF_01407}. FT BINDING 218 218 ATP. {ECO:0000256|HAMAP-Rule:MF_01407}. FT BINDING 230 230 ATP. {ECO:0000256|HAMAP-Rule:MF_01407}. SQ SEQUENCE 400 AA; 44875 MW; 22BD4E2F7D6A7360 CRC64; MSDPIDRLLD AAESGKSIIK NREILHFTYI PKTIQHRNTE QEQVTQSLLP ILKQSRPSNL LVYGKPGTGK TLVVKKVISK IQERVEKSNF PIKLIYSNAK KETTLYGLLV SFGRQLGLSD KELPSTGLAI SEVFKRILNN IDQEKTNVVF VIDEIDYLAE LVSKTGKDIL YQLTRANENL NSGSLTLIGI SNDLTFKEKL DPRVISSLGE EEIVFTNYDV EQIKKILEER ISEAFEAESV DESALNLCAA LAGGEHGDAR RAIDLIRVAG ELAERQQSDK VTETHVRDAS QKIEENKEET SLKSYPLHEK LVILAIMKAN GSSTGEIYSS YKNLCKVVGR DELTQRRITQ MLSEIELSGI ISGRLVHQGI HGRTKKYKLT ISSEMVKKTF KDDLTLQDIV // ID A9A4V8_NITMS Unreviewed; 520 AA. AC A9A4V8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 38. DE SubName: Full=von Willebrand factor type A {ECO:0000313|EMBL:ABX13412.1}; GN OrderedLocusNames=Nmar_1516 {ECO:0000313|EMBL:ABX13412.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13412.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13412.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13412.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13412.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4V8; -. DR STRING; 436308.Nmar_1516; -. DR EnsemblBacteria; ABX13412; ABX13412; Nmar_1516. DR KEGG; nmr:Nmar_1516; -. DR eggNOG; arCOG02900; Archaea. DR eggNOG; COG2304; LUCA. DR HOGENOM; HOG000105176; -. DR OMA; KFAVYAF; -. DR BioCyc; NMAR436308:GI3J-1558-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.410; -; 1. DR InterPro; IPR002035; VWF_A. DR Pfam; PF00092; VWA; 1. DR SMART; SM00327; VWA; 1. DR SUPFAM; SSF53300; SSF53300; 1. DR PROSITE; PS50234; VWFA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 348 520 VWFA. {ECO:0000259|PROSITE:PS50234}. SQ SEQUENCE 520 AA; 59576 MW; 8DC792ED5851099D CRC64; MQSVKLQNES LVEIATFLVR RWSERDNIVV EISDKTETKT RLKENKVILT PLEKRVGNDF QKYRQFRTSL WYEAMRIKFC KKILSNDHAF GFILNTMETR RVEELGRKIW KGMDDEIIFN YAYMLVARPQ LHTVYGKARI VEAFYQYFMF GAVKGEVQSS HFEKIRKADA FAKKMVSKAI EENHDTDWLE KNVSEIIKIL EIDSLLTIPV SLPFMKAGMP LSEEELLRVL KIVSKNKEGD FGKVDPSAIL KGEDVIDEYN VLLDEDKKTE NKGLMPEAIG IQIPTTRNVD ETVIYDMSLI NGLKTKFKEW KTGWKEQHVR SGEEFDEENY IEGNEPFFTD IKKSIKTKIV ILLDHSSSIS SDAIEYKKAT LALCEVLAYL KVKFAVYAFS TENRSVVCWS IKPDNMKWNN VTAKRLAQIV ANGSTPLAEV YDKMFPILQS KRPDILLTLT DGEPSDPDAV RNMTKSLKSL GISMVALGLG PNTVRATTIA NNLRHLGYEK TMAVSRLRDI PNKVIKILDI // ID A9A1C7_NITMS Unreviewed; 641 AA. AC A9A1C7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE SubName: Full=AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABX12762.1}; GN OrderedLocusNames=Nmar_0866 {ECO:0000313|EMBL:ABX12762.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12762.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12762.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12762.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12762.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1C7; -. DR STRING; 436308.Nmar_0866; -. DR EnsemblBacteria; ABX12762; ABX12762; Nmar_0866. DR KEGG; nmr:Nmar_0866; -. DR eggNOG; arCOG01529; Archaea. DR eggNOG; COG0365; LUCA. DR HOGENOM; HOG000229981; -. DR KO; K01895; -. DR OMA; SEYNATI; -. DR BioCyc; NMAR436308:GI3J-894-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW. DR InterPro; IPR032387; ACAS_N. DR InterPro; IPR025110; AMP-bd_C. DR InterPro; IPR020845; AMP-binding_CS. DR InterPro; IPR000873; AMP-dep_Synth/Lig. DR Pfam; PF16177; ACAS_N; 1. DR Pfam; PF00501; AMP-binding; 1. DR Pfam; PF13193; AMP-binding_C; 1. DR PROSITE; PS00455; AMP_BINDING; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX12762.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 32 83 ACAS_N. {ECO:0000259|Pfam:PF16177}. FT DOMAIN 90 522 AMP-binding. {ECO:0000259|Pfam:PF00501}. FT DOMAIN 531 607 AMP-binding_C. FT {ECO:0000259|Pfam:PF13193}. SQ SEQUENCE 641 AA; 71862 MW; 684B7B5062B90388 CRC64; MSDFEFVPTQ NQVEESNIFR FMQKHGLSSL SELSKKSKDE LEWFWQEVDK DIGVVWDSPY SQILDSSNGI AHSKWFVNGK TNIYKSTVEK FVKLTPDKTA YHFVSEDGAT SKLTYQELDN KVSKLANGLK SLRVKKGDVV AIYLPMIQEA ILAILASAKI GAVQTVIFSG YSTESLHIRL QDCNAKVLFV SDGFCRKGKP ISQKETVQKA IQDTYVEKTI VVKYKGVDKY ENSENIVFYN ELIESQNPDC PTEIMDSEDP LFILYTSGTT GKPKGVVHVH GGFSVFAGHQ AAYLIDLQAQ DVLFWPADIG WITGLVWNVY GLLIMGASSV IYDGALDFPK SDRVWKILSE YNATIFGISP TATRLFKKNN EEPLQNFSLD KIKNIPTTGE PLDEDSWWWL FDKVGNKKIP IMNLSGGTEI GGAMLSVFPG MKLKPSTVGI PVPGMNLDVV DNDGNSVKNK NGYLIIRSPW PGMTRGLLND NERFIETYWS RFKDIWFHGD YVFVDQDGLW YMRGRTDDVI NVSGHRMSTA EIEHMVISHE KISDAASIAI PDDITGEAIV IFFVADSKDD SNLEGIVSDF ISQKIGKVAK PKFVYQLTDL PKTRTGKIMR RLLKSKLLGK ELGDLSSLEN PQILDEVPKI G // ID A9A2S4_NITMS Unreviewed; 227 AA. AC A9A2S4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 67. DE RecName: Full=Uridylate kinase {ECO:0000256|SAAS:SAAS00055191}; DE EC=2.7.4.22 {ECO:0000256|SAAS:SAAS00055199}; GN OrderedLocusNames=Nmar_1705 {ECO:0000313|EMBL:ABX13601.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13601.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13601.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13601.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the reversible phosphorylation of UMP to UDP. CC {ECO:0000256|SAAS:SAAS00366685}. CC -!- CATALYTIC ACTIVITY: ATP + UMP = ADP + UDP. CC {ECO:0000256|SAAS:SAAS00055193}. CC -!- PATHWAY: Pyrimidine metabolism; CTP biosynthesis via de novo CC pathway; UDP from UMP (UMPK route): step 1/1. CC {ECO:0000256|SAAS:SAAS00055190}. CC -!- SUBUNIT: Homohexamer. {ECO:0000256|SAAS:SAAS00366691}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|SAAS:SAAS00055192}. CC -!- SIMILARITY: Belongs to the UMP kinase family. CC {ECO:0000256|SAAS:SAAS00558071}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13601.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2S4; -. DR STRING; 436308.Nmar_1705; -. DR EnsemblBacteria; ABX13601; ABX13601; Nmar_1705. DR KEGG; nmr:Nmar_1705; -. DR eggNOG; arCOG00858; Archaea. DR eggNOG; COG0528; LUCA. DR HOGENOM; HOG000047188; -. DR KO; K09903; -. DR OMA; IRVIVMN; -. DR BioCyc; NMAR436308:GI3J-1750-MONOMER; -. DR UniPathway; UPA00159; UER00275. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0033862; F:UMP kinase activity; IEA:UniProtKB-EC. DR GO; GO:0044210; P:'de novo' CTP biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.1160.10; -; 1. DR HAMAP; MF_01220_A; PyrH_A; 1. DR InterPro; IPR001048; Asp/Glu/Uridylate_kinase. DR InterPro; IPR011817; Uridylate_kinase. DR InterPro; IPR011818; Uridylate_kinase_arch/spir. DR PANTHER; PTHR21499:SF23; PTHR21499:SF23; 1. DR Pfam; PF00696; AA_kinase; 1. DR PIRSF; PIRSF005650; Uridylate_kin; 1. DR SUPFAM; SSF53633; SSF53633; 1. DR TIGRFAMs; TIGR02076; pyrH_arch; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|SAAS:SAAS00444198}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|SAAS:SAAS00444203}; KW Kinase {ECO:0000256|SAAS:SAAS00444201, ECO:0000313|EMBL:ABX13601.1}; KW Nucleotide-binding {ECO:0000256|SAAS:SAAS00444198}; KW Pyrimidine biosynthesis {ECO:0000256|SAAS:SAAS00444200}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|SAAS:SAAS00444201, KW ECO:0000313|EMBL:ABX13601.1}. FT DOMAIN 3 202 AA_kinase. {ECO:0000259|Pfam:PF00696}. SQ SEQUENCE 227 AA; 24961 MW; BD463EF200AABA1C CRC64; MKKRIVIKLS GRVFAMDNVK LLKDWAEFLV KISKVCQPII IAGGGNIARH YINHARSSGA DESTLDELGI EISRLNAKLL IYALKNKAYS HPPTTLQEVR HAVDDGLIVV AGGLHPGQST NGTAALIAEK VKAEQFLNAT DVDGVYDMDP NKFKKAKKFK RIELKNLKNM LVHEDSVAGG YDLMDIVALK IIERSKIKTR ILKASPKIIE KAIKGGNLGT EIIIPTK // ID A9A412_NITMS Unreviewed; 324 AA. AC A9A412; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Transketolase central region {ECO:0000313|EMBL:ABX12196.1}; GN OrderedLocusNames=Nmar_0300 {ECO:0000313|EMBL:ABX12196.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12196.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12196.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12196.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12196.1; -; Genomic_DNA. DR ProteinModelPortal; A9A412; -. DR STRING; 436308.Nmar_0300; -. DR EnsemblBacteria; ABX12196; ABX12196; Nmar_0300. DR KEGG; nmr:Nmar_0300; -. DR eggNOG; arCOG01051; Archaea. DR eggNOG; COG3958; LUCA. DR HOGENOM; HOG000243869; -. DR KO; K00615; -. DR OMA; PVYVRMP; -. DR BioCyc; NMAR436308:GI3J-313-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.40.50.920; -; 1. DR Gene3D; 3.40.50.970; -; 1. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR009014; Transketo_C/PFOR_II. DR InterPro; IPR005475; Transketolase-like_Pyr-bd. DR InterPro; IPR033248; Transketolase_C. DR InterPro; IPR033247; Transketolase_fam. DR PANTHER; PTHR11624; PTHR11624; 1. DR Pfam; PF02779; Transket_pyr; 1. DR Pfam; PF02780; Transketolase_C; 1. DR SMART; SM00861; Transket_pyr; 1. DR SUPFAM; SSF52518; SSF52518; 1. DR SUPFAM; SSF52922; SSF52922; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 178 Transket_pyr. FT {ECO:0000259|SMART:SM00861}. SQ SEQUENCE 324 AA; 34905 MW; 74A578044B0221CD CRC64; MNEPVMTDMR SEYSKSLIQL GKENPNVVVL GADTTDSLKT SGFGKEFPNR FFNVGIAEAN LVTTSAGLAV SGKIPFASTY AIFLPGRAVD QIRNNVAYPS PPGKKGLNVK FVVSHGGLSV GPDGGSHQQI EDIGIMRVIP NFRVFIPADT IAVSKLTSLM ANEYGPFYMR MARSKTPLVH SDSQNFETGK AITLRDGSDC TIAACGITVR MALEAAESLQ QEGISCRVLD MFSIKPIDNA TLEKAARETG CIVTAEEHNI VGGMGSAVAE SVSESYPVPI KRIGAQDMFG ESARDKEIPL LLEKHGITSF NMVKQVKEVR SKKL // ID A9A1S2_NITMS Unreviewed; 81 AA. AC A9A1S2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12043.1}; GN OrderedLocusNames=Nmar_0143 {ECO:0000313|EMBL:ABX12043.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12043.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12043.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12043.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12043.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0143; -. DR EnsemblBacteria; ABX12043; ABX12043; Nmar_0143. DR KEGG; nmr:Nmar_0143; -. DR BioCyc; NMAR436308:GI3J-146-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.1200.10; -; 1. DR InterPro; IPR009081; PP-bd_ACP. DR Pfam; PF00550; PP-binding; 1. DR SUPFAM; SSF47336; SSF47336; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 23 71 Acyl carrier. {ECO:0000259|Pfam:PF00550}. SQ SEQUENCE 81 AA; 9562 MW; 5B07AF12C38CECF5 CRC64; MEWLLEWFEN NSDLKSNEIL SSLNEDFLIK GWIDSFTFIN LITEIEEKYK ISFNTDELQN EKFATLDGLA NIIGDRIEKN L // ID A9A5Y4_NITMS Unreviewed; 183 AA. AC A9A5Y4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE RecName: Full=Exosome complex component Csl4 {ECO:0000256|HAMAP-Rule:MF_00975}; GN Name=csl4 {ECO:0000256|HAMAP-Rule:MF_00975}; GN OrderedLocusNames=Nmar_1566 {ECO:0000313|EMBL:ABX13462.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13462.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13462.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13462.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Non-catalytic component of the exosome, which is a CC complex involved in RNA degradation. Increases the RNA binding and CC the efficiency of RNA degradation. Helpful for the interaction of CC the exosome with A-poor RNAs. {ECO:0000256|HAMAP-Rule:MF_00975}. CC -!- SUBUNIT: Component of the archaeal exosome complex. Forms a trimer CC of Rrp4 and/or Csl4 subunits. The trimer associates with an CC hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 CC heterodimers. Interacts with DnaG. {ECO:0000256|HAMAP- CC Rule:MF_00975}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975}. CC -!- SIMILARITY: Belongs to the CSL4 family. {ECO:0000256|HAMAP- CC Rule:MF_00975}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13462.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y4; -. DR STRING; 436308.Nmar_1566; -. DR EnsemblBacteria; ABX13462; ABX13462; Nmar_1566. DR KEGG; nmr:Nmar_1566; -. DR eggNOG; arCOG00676; Archaea. DR eggNOG; COG1096; LUCA. DR KO; K07573; -. DR OMA; GTIHATI; -. DR BioCyc; NMAR436308:GI3J-1610-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006401; P:RNA catabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006396; P:RNA processing; IEA:InterPro. DR HAMAP; MF_00975; Exosome_Csl4; 1. DR InterPro; IPR030850; Exosome_Csl4_arc. DR InterPro; IPR012340; NA-bd_OB-fold. DR SUPFAM; SSF50249; SSF50249; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00975}; KW Exosome {ECO:0000256|HAMAP-Rule:MF_00975}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00975}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00975}. FT METAL 142 142 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}. FT METAL 145 145 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}. FT METAL 158 158 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}. FT METAL 161 161 Zinc. {ECO:0000256|HAMAP-Rule:MF_00975}. SQ SEQUENCE 183 AA; 20013 MW; B14A81974EF1B6CF CRC64; MSENATYPGE KIASIEEYEA GYNAFDDGDM VRAATIGQKD IDKTTRTANI NHPKNLSIPK VGDVVIGTVA AVMSSMIAVS IDYINGNPTT SKVECVCSTR NIRKRNIALV NDIAKLKILN HLNGTIHATI DESSLGILFT KCRKCGGKVV PMRDAIKCTE CSWIDERKLS ADFGKSDFVK LRE // ID A9A191_NITMS Unreviewed; 325 AA. AC A9A191; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 60. DE RecName: Full=Phosphate transport system permease protein {ECO:0000256|RuleBase:RU363054}; GN OrderedLocusNames=Nmar_0481 {ECO:0000313|EMBL:ABX12377.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12377.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12377.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12377.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of the binding-protein-dependent transport system CC for phosphate; probably responsible for the translocation of the CC substrate across the membrane. {ECO:0000256|RuleBase:RU363054}. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363032}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363032}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. CysTW subfamily. CC {ECO:0000256|RuleBase:RU363054}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363032}. CC -!- CAUTION: Lacks conserved residue(s) required for the propagation CC of feature annotation. {ECO:0000256|RuleBase:RU363054}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12377.1; -; Genomic_DNA. DR ProteinModelPortal; A9A191; -. DR STRING; 436308.Nmar_0481; -. DR EnsemblBacteria; ABX12377; ABX12377; Nmar_0481. DR KEGG; nmr:Nmar_0481; -. DR eggNOG; arCOG00167; Archaea. DR eggNOG; COG0573; LUCA. DR HOGENOM; HOG000074139; -. DR KO; K02037; -. DR OMA; TAIFITE; -. DR BioCyc; NMAR436308:GI3J-501-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005315; F:inorganic phosphate transmembrane transporter activity; IEA:InterPro. DR GO; GO:0006817; P:phosphate ion transport; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR InterPro; IPR011864; Phosphate_PstC. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR TIGRFAMs; TIGR02138; phosphate_pstC; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|RuleBase:RU363054}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU363032, KW ECO:0000256|RuleBase:RU363054}; KW Phosphate transport {ECO:0000256|RuleBase:RU363054}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363032}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363032}; KW Transport {ECO:0000256|RuleBase:RU363054}. FT TRANSMEM 20 44 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 78 103 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 115 138 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 158 182 Helical. {ECO:0000256|RuleBase:RU363032}. FT TRANSMEM 289 312 Helical. {ECO:0000256|RuleBase:RU363032}. FT DOMAIN 79 308 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 325 AA; 34838 MW; 86F6648C172BDF9B CRC64; MGRPKLNPPK VGRRPISDKI FKVGATVAGV YVLVVIVLLA FQLISESAPI WDEYGLSFIV KSEWNAIDDR QDFGVLPYIF GTLVTSALAM VIGVPLSIGI AMFISDAPSK IGGPLGFLVE LLAAVPSVIY GLWGLFVFRV YFVDWVEKPL HNTFGDSIWL FSGTPFGLDI LTASVILAIM IIPTVSAVSR EVMKAVPQQQ KEAAYMLGAT KWEMFKLAVF PYSKTGLIGA SILGLGRAVG ETMAVTMLIG NATGPNAFAD SLFDPSQTMS SIIANEFNEA SLGTLHLPAL IGVAVVLLLI AIAINVVAHI LVTRMLKVKE GAINN // ID A9A472_NITMS Unreviewed; 200 AA. AC A9A472; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Nitroreductase {ECO:0000313|EMBL:ABX12256.1}; GN OrderedLocusNames=Nmar_0360 {ECO:0000313|EMBL:ABX12256.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12256.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12256.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12256.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12256.1; -; Genomic_DNA. DR ProteinModelPortal; A9A472; -. DR STRING; 436308.Nmar_0360; -. DR EnsemblBacteria; ABX12256; ABX12256; Nmar_0360. DR KEGG; nmr:Nmar_0360; -. DR eggNOG; arCOG00288; Archaea. DR eggNOG; COG0778; LUCA. DR HOGENOM; HOG000146739; -. DR OMA; TEAMRAP; -. DR BioCyc; NMAR436308:GI3J-376-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 1. DR SUPFAM; SSF55469; SSF55469; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 177 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. SQ SEQUENCE 200 AA; 22702 MW; 3E39FB0C84D85396 CRC64; MDVFEAVSTR RAIKKFDPNH KMSSDDVKKL MEHVILSPTS YNQQNWRFVY VTDQDVKEKI SEAARGQAQP KDGSLVIVLC GDMTAWKTEP LRYWKNHPTE KQELVKASLE RKYSTDTQAQ RDEAIRSCGM AAQTIMLSAR DMGLDSCPMV GFEYDELAKV INLPENHLIV MMVVVGKRSE DAAQRGGQLP LNEIAFENSF // ID A9A4T9_NITMS Unreviewed; 295 AA. AC A9A4T9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Putative transcriptional regulator {ECO:0000313|EMBL:ABX13393.1}; GN OrderedLocusNames=Nmar_1497 {ECO:0000313|EMBL:ABX13393.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13393.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13393.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13393.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13393.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13393; ABX13393; Nmar_1497. DR KEGG; nmr:Nmar_1497; -. DR eggNOG; arCOG03932; Archaea. DR eggNOG; ENOG410YYKH; LUCA. DR OMA; REYNSAV; -. DR BioCyc; NMAR436308:GI3J-1537-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 295 AA; 33085 MW; D09D4AE906C58276 CRC64; MGKGYSEEEI REKLISVLKD SESGMSGVEI SEQMKVNRIT MTKYLKVFAA EGLVRQKNIG NITLWFLEPG QESFHFPDDY FKVAPKFLDY LIKGNEDQVY SLIRNSLHSG ATVNRLIIEV ILPAIDSIKN LFDEGKIGTA EKNLLRTIIS KSLQILDQIP IVSESKKNVI VISADFQSSL IAEAASAAFH SDGWRVSHLG DMSSAIDVLF DLDFQKLIGK VWKQKPGVLI VVVFSETDEG LNFFADSINP IKSKSGKRMK LVLCGNTFKK AESDLVTDKL DEIIQWSQTV YQNQK // ID A9A5W2_NITMS Unreviewed; 42 AA. AC A9A5W2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13117.1}; GN OrderedLocusNames=Nmar_1221 {ECO:0000313|EMBL:ABX13117.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13117.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13117.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13117.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13117.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1221; -. DR EnsemblBacteria; ABX13117; ABX13117; Nmar_1221. DR KEGG; nmr:Nmar_1221; -. DR eggNOG; arCOG01989; Archaea. DR eggNOG; COG2888; LUCA. DR KO; K07580; -. DR BioCyc; NMAR436308:GI3J-1254-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 42 AA; 4687 MW; 86937BA699389DCF CRC64; MPNDKCVKFN CPDCGADLIW RCQSCREAAR NYTCSSCNTQ GP // ID A9A3I9_NITMS Unreviewed; 135 AA. AC A9A3I9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Histidine triad (HIT) protein {ECO:0000313|EMBL:ABX12921.1}; GN OrderedLocusNames=Nmar_1025 {ECO:0000313|EMBL:ABX12921.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12921.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12921.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12921.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12921.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3I9; -. DR STRING; 436308.Nmar_1025; -. DR EnsemblBacteria; ABX12921; ABX12921; Nmar_1025. DR KEGG; nmr:Nmar_1025; -. DR eggNOG; arCOG00419; Archaea. DR eggNOG; COG0537; LUCA. DR HOGENOM; HOG000061063; -. DR KO; K02503; -. DR OMA; TAYIEQK; -. DR BioCyc; NMAR436308:GI3J-1056-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.30.428.10; -; 1. DR InterPro; IPR001310; Histidine_triad_HIT. DR InterPro; IPR011146; HIT-like. DR PANTHER; PTHR23089; PTHR23089; 1. DR Pfam; PF01230; HIT; 1. DR PRINTS; PR00332; HISTRIAD. DR SUPFAM; SSF54197; SSF54197; 1. DR PROSITE; PS51084; HIT_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 109 HIT. {ECO:0000259|PROSITE:PS51084}. SQ SEQUENCE 135 AA; 14859 MW; AFE7800DFF2BEA47 CRC64; MDCIFCKIIA KEIPCKILGE TSSSISFHDA FPLAKGHVLV IPKNHHQKIQ EMSDEENTDL FSLVHKMIAK VDSITGATLV AVHNGKEAGQ EVPHVHVHLV PRSSDDSASA IHSMFDGTLK LSESESDELY DKLKL // ID A9A4I6_NITMS Unreviewed; 91 AA. AC A9A4I6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12964.1}; GN OrderedLocusNames=Nmar_1068 {ECO:0000313|EMBL:ABX12964.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12964.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12964.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12964.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12964.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12964; ABX12964; Nmar_1068. DR KEGG; nmr:Nmar_1068; -. DR eggNOG; ENOG4102U9G; Archaea. DR eggNOG; ENOG4110ZKC; LUCA. DR BioCyc; NMAR436308:GI3J-1099-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 29 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 79 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 91 AA; 10568 MW; 64A84CB1E82A9C6D CRC64; MTDDRTRCKE CYIHKRKLSA RQLIRKNKLV FVFIGILWFY AVFPGPFMPG LEGGFYVISV VAAVLILIPV CLAMFFWSLN PPKSDVKKRR D // ID A9A630_NITMS Unreviewed; 218 AA. AC A9A630; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:ABX13508.1}; GN OrderedLocusNames=Nmar_1612 {ECO:0000313|EMBL:ABX13508.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13508.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13508.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13508.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13508.1; -; Genomic_DNA. DR ProteinModelPortal; A9A630; -. DR STRING; 436308.Nmar_1612; -. DR EnsemblBacteria; ABX13508; ABX13508; Nmar_1612. DR KEGG; nmr:Nmar_1612; -. DR eggNOG; arCOG01484; Archaea. DR eggNOG; COG1985; LUCA. DR HOGENOM; HOG000225965; -. DR KO; K14654; -. DR OMA; KPYVISN; -. DR BioCyc; NMAR436308:GI3J-1656-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008703; F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity; IEA:InterPro. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.430.10; -; 1. DR InterPro; IPR024072; DHFR-like_dom. DR InterPro; IPR006401; Rib_reduct_arc. DR InterPro; IPR011549; RibD_C. DR InterPro; IPR002734; RibDG_C. DR Pfam; PF01872; RibD_C; 1. DR SUPFAM; SSF53597; SSF53597; 1. DR TIGRFAMs; TIGR01508; rib_reduct_arch; 1. DR TIGRFAMs; TIGR00227; ribD_Cterm; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 213 RibD_C. {ECO:0000259|Pfam:PF01872}. SQ SEQUENCE 218 AA; 24276 MW; 1055A4747DA38F7F CRC64; MEKSRPHVIL SGAISVDGKI ATKTNDSKLS SQKDIQRLHK LRSSVDAILI GKNTASRDNP LLTVRHVKGK NPIRIVLDSK GTISKTSKIL QSSNKVPTII AISKKITKKN LEKLEKFPVE IISTGNDSVN LKLLLKKLSK KKIKTILVEG GGTVNWEFVK HNLFDEMILT ISPYLLGGED SISYLRGTGF SRISHSPNLR LKSVKRLKNH LVLHYVKL // ID A9A2J9_NITMS Unreviewed; 165 AA. AC A9A2J9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13238.1}; GN OrderedLocusNames=Nmar_1342 {ECO:0000313|EMBL:ABX13238.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13238.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13238.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13238.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13238.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1342; -. DR EnsemblBacteria; ABX13238; ABX13238; Nmar_1342. DR KEGG; nmr:Nmar_1342; -. DR eggNOG; arCOG01568; Archaea. DR eggNOG; COG0668; LUCA. DR BioCyc; NMAR436308:GI3J-1376-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR006685; MscS_channel. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 36 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 83 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 165 AA; 18317 MW; C9EC0A5152FC1621 CRC64; MALEIHAIIS ILVTVVAIAS AKLVDFYKFK KLEGSYKALV VIILLIVIAE GIYLSINFDL LTYALETVTS LSAILIFAAF VYLNKLQNAA SGISIALSTN IHVGSKIEIE NRKGTILKLG LTKTIIEIDE DKKRIWIPNK KFDEVLVSIS RKEQKPSTIN LENKN // ID A9A4E1_NITMS Unreviewed; 481 AA. AC A9A4E1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=FAD linked oxidase domain protein {ECO:0000313|EMBL:ABX12630.1}; GN OrderedLocusNames=Nmar_0734 {ECO:0000313|EMBL:ABX12630.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12630.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12630.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12630.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12630.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4E1; -. DR STRING; 436308.Nmar_0734; -. DR EnsemblBacteria; ABX12630; ABX12630; Nmar_0734. DR KEGG; nmr:Nmar_0734; -. DR eggNOG; arCOG00337; Archaea. DR eggNOG; COG0277; LUCA. DR HOGENOM; HOG000110119; -. DR OMA; AGGICID; -. DR BioCyc; NMAR436308:GI3J-760-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0016614; F:oxidoreductase activity, acting on CH-OH group of donors; IEA:InterPro. DR Gene3D; 1.10.45.10; -; 1. DR Gene3D; 3.30.43.10; -; 1. DR Gene3D; 3.30.465.10; -; 1. DR InterPro; IPR016169; CO_DH_flavot_FAD-bd_sub2. DR InterPro; IPR016166; FAD-bd_2. DR InterPro; IPR016167; FAD-bd_2_sub1. DR InterPro; IPR016164; FAD-linked_Oxase-like_C. DR InterPro; IPR004113; FAD-linked_oxidase_C. DR InterPro; IPR006094; Oxid_FAD_bind_N. DR InterPro; IPR016171; Vanillyl_alc_oxidase_C-sub2. DR Pfam; PF02913; FAD-oxidase_C; 1. DR Pfam; PF01565; FAD_binding_4; 1. DR SUPFAM; SSF55103; SSF55103; 1. DR SUPFAM; SSF56176; SSF56176; 2. DR PROSITE; PS51387; FAD_PCMH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 33 236 FAD-binding PCMH-type. FT {ECO:0000259|PROSITE:PS51387}. SQ SEQUENCE 481 AA; 54734 MW; E760977706D92C86 CRC64; MNSVETQLKK IIRGKVHSET EFRKFYSVDA SSYQIFPKTI VIPKNEKDVI NTIKIAKKYK TNVTVRGAGT GLVGSALNNG IILDMKNFDS IKIKKNYAIV GTGVVKGKLD EKLERYRKFF PPNPSVGSFC SIGGMLGNNS SGSRSLKYGS MIDNVLEVTI IDGNEKKIVL PKDEKLSNKI QKKIKIDEKK IPKVSKNSSG YRIDKIISNK DSHKIIVGSE GTLGIIISAK LKIKNIPKKR ILFVVEYNSI KNAINDCLTI NKTNPSAMEF VDKITLQQIN HKFHKNTKCL LFVEYDEKIS QNMKKFKMII SGNIIKKLTK KQDIFQWWKY RDSSLYYSLK NIKKENRIPH VIEDAAVPIE KLPELFDILD KINKKFKTKS VIYGHIGNGN LHVRLIGKRK KITQIKNIAK QYFDEIINIG GTITAEHGDG LARSEFIKKQ YGKINFETFQ KIKNQFDPNN VLNPGKIISE KSTIIKNFEK L // ID A9A3T7_NITMS Unreviewed; 482 AA. AC A9A3T7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE RecName: Full=tRNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; DE EC=6.5.1.- {ECO:0000256|RuleBase:RU371113}; GN Name=rtcB {ECO:0000256|RuleBase:RU371113}; GN OrderedLocusNames=Nmar_1453 {ECO:0000313|EMBL:ABX13349.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13349.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13349.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13349.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|RuleBase:RU371113}; CC Note=Binds 2 manganese ions per subunit. CC {ECO:0000256|RuleBase:RU371113}; CC -!- SUBUNIT: Monomer. {ECO:0000256|RuleBase:RU371113}. CC -!- SIMILARITY: Belongs to the RtcB family. CC {ECO:0000256|RuleBase:RU371113}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13349.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3T7; -. DR SMR; A9A3T7; 4-482. DR STRING; 436308.Nmar_1453; -. DR EnsemblBacteria; ABX13349; ABX13349; Nmar_1453. DR KEGG; nmr:Nmar_1453; -. DR eggNOG; arCOG04246; Archaea. DR eggNOG; COG1690; LUCA. DR HOGENOM; HOG000220065; -. DR KO; K14415; -. DR OMA; YDVAHNV; -. DR BioCyc; NMAR436308:GI3J-1490-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008452; F:RNA ligase activity; IEA:InterPro. DR GO; GO:0006396; P:RNA processing; IEA:InterPro. DR InterPro; IPR001233; RtcB. DR PANTHER; PTHR11118; PTHR11118; 1. DR Pfam; PF01139; RtcB; 1. DR SUPFAM; SSF103365; SSF103365; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|RuleBase:RU371113}; KW Manganese {ECO:0000256|RuleBase:RU371113}; KW Metal-binding {ECO:0000256|RuleBase:RU371113}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 482 AA; 52501 MW; DA4DC478622EEEC2 CRC64; MGDITPKKIG ENQYQIDADS NLGMKVPVKI YANQGLLDKM LTDRTIMQAR NVSSIPGIVG HSVVLPDGHE GYGFPVGGVA AMDAEEGMIS PGGVGYDINC GVRLLRSNLT EEVVRSKLKD LVTDLFSSIP SGVGSKGAVK LSHSELDEVL VNGVNWAIDH GYGSTNDSDV CEENGQIKNA DPNKVSDKAR KRGAPQLGSL GSGNHFLEIQ KVAEVHDEEA AEKMGIKEGT ITVLVHCGSR GFGHQVCSDY LRVSEQAMSK YDITLPDREL ACVPNTSEEG ESYRKAMFAA LNFAWSNRQM ITHWTRKSFE RVFNQSESDL DMKLVYDVAH NIAKVEKHKV NGEERKLVVH RKGATRAFPA NRDEVPTKYR HLGQPVLVPG SMGTASWILL GQPNSMDLSF GSTAHGAGRT MSRSKARRNY TEDDVKKSLN DKGIFIKALT RDGVVEETPQ AYKDVNSVVD VSHNLGIATK VAKLVPIGVI KG // ID A9A5A4_NITMS Unreviewed; 148 AA. AC A9A5A4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12303.1}; GN OrderedLocusNames=Nmar_0407 {ECO:0000313|EMBL:ABX12303.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12303.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12303.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12303.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12303.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0407; -. DR EnsemblBacteria; ABX12303; ABX12303; Nmar_0407. DR KEGG; nmr:Nmar_0407; -. DR eggNOG; arCOG07571; Archaea. DR eggNOG; ENOG410Y4FA; LUCA. DR HOGENOM; HOG000105892; -. DR OMA; KITIMNT; -. DR BioCyc; NMAR436308:GI3J-424-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 148 AA; 16233 MW; 6EB8253F999C0C84 CRC64; MLSKSLVIFV GIGIISGLLF GIYLIDVKNT SQLVYVEGSG ISILTEKFDF KKGEEIKITI MNTGTVPISF SDASYGLRIT GLSGMLMYSP TSTQVLSELK PNEEVTFSWD QINNDGDSAL EGLYKISAKG FDENGEKVER STTITIWK // ID A9A2E1_NITMS Unreviewed; 135 AA. AC A9A2E1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12852.1}; GN OrderedLocusNames=Nmar_0956 {ECO:0000313|EMBL:ABX12852.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12852.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12852.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12852.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12852.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0956; -. DR EnsemblBacteria; ABX12852; ABX12852; Nmar_0956. DR KEGG; nmr:Nmar_0956; -. DR eggNOG; arCOG08685; Archaea. DR eggNOG; ENOG41111FE; LUCA. DR OMA; EIDHIEY; -. DR BioCyc; NMAR436308:GI3J-984-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 135 AA; 15195 MW; 1D89568383F87D86 CRC64; MARKLLSPIF LGVFTVLAIF FLTGGADDDK DELRQTFQVN AVYYDTGHVE VAFSDKSEKT DSVVMEILGM EETYQKTFSS PAFIEIVPFP GEPKYGWEIH PVVLEIDHPE LGHVQLKTEI YQLGDSAPPV IYSRP // ID A9A2H1_NITMS Unreviewed; 240 AA. AC A9A2H1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 50. DE SubName: Full=Proteasome endopeptidase complex {ECO:0000313|EMBL:ABX13210.1}; DE EC=3.4.25.1 {ECO:0000313|EMBL:ABX13210.1}; GN OrderedLocusNames=Nmar_1314 {ECO:0000313|EMBL:ABX13210.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13210.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13210.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13210.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13210.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H1; -. DR STRING; 436308.Nmar_1314; -. DR EnsemblBacteria; ABX13210; ABX13210; Nmar_1314. DR KEGG; nmr:Nmar_1314; -. DR eggNOG; arCOG00971; Archaea. DR eggNOG; COG0638; LUCA. DR HOGENOM; HOG000091085; -. DR KO; K03432; -. DR OMA; HIACAVA; -. DR BioCyc; NMAR436308:GI3J-1347-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0019773; C:proteasome core complex, alpha-subunit complex; IEA:InterPro. DR GO; GO:0004298; F:threonine-type endopeptidase activity; IEA:InterPro. DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro. DR Gene3D; 3.60.20.10; -; 1. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR000426; Proteasome_asu_N. DR InterPro; IPR023332; Proteasome_suA-type. DR InterPro; IPR001353; Proteasome_sua/b. DR Pfam; PF00227; Proteasome; 1. DR Pfam; PF10584; Proteasome_A_N; 1. DR SMART; SM00948; Proteasome_A_N; 1. DR SUPFAM; SSF56235; SSF56235; 1. DR PROSITE; PS51475; PROTEASOME_ALPHA_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13210.1}; KW Proteasome {ECO:0000313|EMBL:ABX13210.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 29 PROTEASOME_ALPHA_1. FT {ECO:0000259|SMART:SM00948}. SQ SEQUENCE 240 AA; 26018 MW; 4D1E3D9B0F010A30 CRC64; MMASKGYDMT PTMYSPDGRI YQVEYAIETV KRGTLAIGVA SKQGVIMAVE EKPRTLQSTD VTQKIFQVDY HIGVAAAGYI PDARVQVDSA RFFSQGNRMT YDESVEVATV AKHLADQAHQ FTQYGGVRPN GVSMIIAGVD QKGESIYVTD PSGTYVQFAA IAIGAGSDDV NAFLEKNYKE DMSLEDAAAL AIAAINLKAE EKGGVKDIKM AKVSTESKIF EKVSEADLQN YSQNASKFVP // ID A9A2P5_NITMS Unreviewed; 573 AA. AC A9A2P5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13572.1}; GN OrderedLocusNames=Nmar_1676 {ECO:0000313|EMBL:ABX13572.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13572.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13572.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13572.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13572.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1676; -. DR EnsemblBacteria; ABX13572; ABX13572; Nmar_1676. DR KEGG; nmr:Nmar_1676; -. DR eggNOG; arCOG08795; Archaea. DR eggNOG; arCOG08812; Archaea. DR eggNOG; ENOG4110ZJZ; LUCA. DR BioCyc; NMAR436308:GI3J-1721-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR027560; PEFG-CTERM. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 542 560 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 573 AA; 64365 MW; 1C8D570090F81A99 CRC64; MKKFLLIFMM GIVASSFVPT AFGHGLGGET HPPVTLDGRD VILSIDISPS VFDVEDPERY ITINLKNAKS EAAVEHVTYA FEMIKDGKQI FRKLFHDDLG NLTIKTIYDN SNEIKVIGDK SPAIESWMRT ATEPVIMTGP IFDSGGLYEY KVEILTVDSD FNFLDKRMEL VGAISLAEHN TFQVTDSKEN THNVNVISYF DSVNNFKFDS NMISFSMPFD WNQDFEQLSV VHQEVRIAPE FSELLHTKYE AKVNDILLPA EVVTIDDYSL DGRTVHMVLN REDLNQIKEH AIQKSDSQMY FELGPGQGDG FPLEAVTPDY RYRVFLSWEP EVITPGEDVT FFVKTDEIFT DKTNKNIEYG IELIQNENTI FNKRVSGSVN TGKTDSFQYN FSPENVGTIK FRISEIEGFS LANVNFLVAI NEPENAKFPI VLESVSASNP TNGKYLVDLT WFPNILSLGE SEFIMSFYQK DTGLTTGDIA YDFVLIKNGT EIHRKSGLAT GGGTFENFVF VEKEAGDVTI RIENIGGTDE YVEIAVNVAP EFPLGVSIIL AIILISIVVL SKTKYVTNFQ IKT // ID A9A425_NITMS Unreviewed; 216 AA. AC A9A425; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Isopentenyl-diphosphate delta-isomerase, type 1 {ECO:0000313|EMBL:ABX12209.1}; DE EC=5.3.3.2 {ECO:0000313|EMBL:ABX12209.1}; GN OrderedLocusNames=Nmar_0313 {ECO:0000313|EMBL:ABX12209.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12209.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12209.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12209.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12209.1; -; Genomic_DNA. DR ProteinModelPortal; A9A425; -. DR STRING; 436308.Nmar_0313; -. DR EnsemblBacteria; ABX12209; ABX12209; Nmar_0313. DR KEGG; nmr:Nmar_0313; -. DR eggNOG; arCOG01081; Archaea. DR eggNOG; COG1443; LUCA. DR HOGENOM; HOG000274107; -. DR KO; K01823; -. DR OMA; RFEYKRY; -. DR BioCyc; NMAR436308:GI3J-327-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR GO; GO:0004452; F:isopentenyl-diphosphate delta-isomerase activity; IEA:UniProtKB-EC. DR GO; GO:0008299; P:isoprenoid biosynthetic process; IEA:InterPro. DR Gene3D; 3.90.79.10; -; 1. DR HAMAP; MF_00202; Idi; 1. DR InterPro; IPR011876; IsopentenylPP_isomerase_typ1. DR InterPro; IPR000086; NUDIX_hydrolase_dom. DR InterPro; IPR015797; NUDIX_hydrolase_dom-like. DR PANTHER; PTHR10885; PTHR10885; 1. DR Pfam; PF00293; NUDIX; 1. DR PIRSF; PIRSF018427; Isopntndiph_ism; 1. DR SUPFAM; SSF55811; SSF55811; 1. DR TIGRFAMs; TIGR02150; IPP_isom_1; 1. DR PROSITE; PS51462; NUDIX; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12209.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 30 164 Nudix hydrolase. FT {ECO:0000259|PROSITE:PS51462}. SQ SEQUENCE 216 AA; 24890 MW; D5D86D49A7D80308 CRC64; MAEEFVILVD ENDNPIGKEE KVKCHLPNGK LHRAFTALLF DDSGRLVLTR RAKEKMLWPG DWDGTFASHP RESETYVSSG ERRMPEELGI EGKLDYLHKF EYHVPYKDVG SENEICGTLI GVIDKSTELK EIEGEIDEIK WSSADELLSE IKTKPEIYCP WMLIALELLE KSDKSVLEKH ANILSTWMTN EVHEGLQNAI KTHLPEEKWR LVNEKN // ID A9A415_NITMS Unreviewed; 340 AA. AC A9A415; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Mg2 transporter protein CorA family protein {ECO:0000313|EMBL:ABX12199.1}; GN OrderedLocusNames=Nmar_0303 {ECO:0000313|EMBL:ABX12199.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12199.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12199.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12199.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12199.1; -; Genomic_DNA. DR ProteinModelPortal; A9A415; -. DR EnsemblBacteria; ABX12199; ABX12199; Nmar_0303. DR KEGG; nmr:Nmar_0303; -. DR eggNOG; arCOG02265; Archaea. DR eggNOG; COG0598; LUCA. DR HOGENOM; HOG000109525; -. DR KO; K03284; -. DR OMA; MYIQHID; -. DR BioCyc; NMAR436308:GI3J-316-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0046873; F:metal ion transmembrane transporter activity; IEA:InterPro. DR InterPro; IPR002523; MgTranspt_CorA/ZnTranspt_ZntB. DR Pfam; PF01544; CorA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 270 291 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 311 332 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 340 AA; 39308 MW; 670D9DAADD36A4EB CRC64; MRKGFISNRL RSGRKNIEDS IEKKIETIHA EKFVWIDLQN PDREEVEELA EKYNFNALNI EDCMTKFELP KLDSYDDHFF VILHFPPLTQ KLGISKNSQL SIFVGKDFLV TVHQGDLKPL VELVDICKSN SDEQRKNRIL QKSSGLLLHE IIDVLVDDLL HTSRKIIANL DEIEDRVFDE TKPVARSIAL LRREINRLRR IANPLKKFVL EITKNVKKFT ERNEEDLSLY YDDIIDHIDK VIETLEESRE TMEIYKDTDF VLSTEKTNKV LAVLTIIFTL AIPATVIGTF YGMNVNLPGG VDENPMFLGP FTTFIIVILA SAIPAIMMFT YFKKLGWINN // ID A9A193_NITMS Unreviewed; 277 AA. AC A9A193; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 61. DE RecName: Full=Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; DE EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702}; DE AltName: Full=ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; DE AltName: Full=Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; GN Name=pstB {ECO:0000256|HAMAP-Rule:MF_01702}; GN OrderedLocusNames=Nmar_0483 {ECO:0000313|EMBL:ABX12379.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12379.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12379.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12379.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of the ABC transporter complex PstSACB involved in CC phosphate import. Responsible for energy coupling to the transport CC system. {ECO:0000256|HAMAP-Rule:MF_01702}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O + phosphate(Out) = ADP + phosphate CC + phosphate(In). {ECO:0000256|HAMAP-Rule:MF_01702}. CC -!- SUBUNIT: The complex is composed of two ATP-binding proteins CC (PstB), two transmembrane proteins (PstC and PstA) and a solute- CC binding protein (PstS). {ECO:0000256|HAMAP-Rule:MF_01702}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_01702}; Peripheral membrane protein {ECO:0000256|HAMAP- CC Rule:MF_01702}. CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. Phosphate CC importer (TC 3.A.1.7) family. {ECO:0000256|HAMAP-Rule:MF_01702}. CC -!- SIMILARITY: Contains 1 ABC transporter domain. {ECO:0000256|HAMAP- CC Rule:MF_01702, ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12379.1; -; Genomic_DNA. DR ProteinModelPortal; A9A193; -. DR STRING; 436308.Nmar_0483; -. DR EnsemblBacteria; ABX12379; ABX12379; Nmar_0483. DR KEGG; nmr:Nmar_0483; -. DR eggNOG; arCOG00231; Archaea. DR eggNOG; COG1117; LUCA. DR KO; K02036; -. DR OMA; FDKPKFQ; -. DR BioCyc; NMAR436308:GI3J-503-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0005315; F:inorganic phosphate transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015415; F:phosphate ion transmembrane-transporting ATPase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR015850; ABC_transpr_PstB. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005670; Phosp_transpt1. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00972; 3a0107s01c2; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. DR PROSITE; PS51238; PSTB; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01702, KW ECO:0000256|RuleBase:RU363033}; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_01702}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_01702}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_01702}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01702, KW ECO:0000256|RuleBase:RU363033}; KW Phosphate transport {ECO:0000256|HAMAP-Rule:MF_01702}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transport {ECO:0000256|HAMAP-Rule:MF_01702}. FT DOMAIN 30 272 ABC transporter. {ECO:0000256|HAMAP- FT Rule:MF_01702, FT ECO:0000259|PROSITE:PS50893}. FT DOMAIN 231 277 PSTB. {ECO:0000259|PROSITE:PS51238}. FT NP_BIND 62 69 ATP. {ECO:0000256|HAMAP-Rule:MF_01702}. SQ SEQUENCE 277 AA; 31245 MW; B1A3ECE4EB0D4F04 CRC64; MTALATKSEN IEKQIISDPS DTIDSEKYKM IAENVTISYD GIQAVKNITM KFKEKSVTAL IGPSGCGKTT FLRCLNRMHD MTKNAKVDGK VMIDNIDLYD QSIDPIYHRR KVGMVFQKPN PFPTMSIYDN VTAGLKLNGV KDKRILDEIV EDSLKMAYLW DEVKGDLKKS AIELSGGQQQ RLCIARALAI QPEVLLMDEP ASALDPIATQ KIEETITELK KEYTIIIVTH NMQQAVRVSD YTGFMYLGDL VEFRETKKLF TDPKNELTAK YVQGQFG // ID A9A2T2_NITMS Unreviewed; 207 AA. AC A9A2T2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 55. DE SubName: Full=ABC transporter related {ECO:0000313|EMBL:ABX13609.1}; GN OrderedLocusNames=Nmar_1713 {ECO:0000313|EMBL:ABX13609.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13609.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13609.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13609.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13609.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2T2; -. DR STRING; 436308.Nmar_1713; -. DR EnsemblBacteria; ABX13609; ABX13609; Nmar_1713. DR KEGG; nmr:Nmar_1713; -. DR eggNOG; arCOG00922; Archaea. DR eggNOG; COG1136; LUCA. DR KO; K09810; -. DR OMA; SYVFQSF; -. DR BioCyc; NMAR436308:GI3J-1758-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 206 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 207 AA; 22551 MW; 225E231DED29DA5B CRC64; MSVEQGEIVL IVGSSGSGKS TLLNMIGLLD RPTSGKIYID GTDTTTLDDD KISSFRNKKL GFIFQFSNLL TDLTVLENVL LPRQIAGTNE TAEKDARDLL KAVGLEDQMN KRANKISGGQ AQRAAIARGL INKPSIVLAD EPTGNLDSVT SETIVQLMKD MAKKLNQTFV IVTHDRQHFG DVDKVITIKD GKAFEGDMPS EMEVLVK // ID A9A5U5_NITMS Unreviewed; 304 AA. AC A9A5U5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13100.1}; GN OrderedLocusNames=Nmar_1204 {ECO:0000313|EMBL:ABX13100.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13100.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13100.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13100.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13100.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1204; -. DR EnsemblBacteria; ABX13100; ABX13100; Nmar_1204. DR KEGG; nmr:Nmar_1204; -. DR eggNOG; arCOG10350; Archaea. DR eggNOG; ENOG41122U8; LUCA. DR BioCyc; NMAR436308:GI3J-1237-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR027560; PEFG-CTERM. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 36 61 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 272 290 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 304 AA; 33704 MW; 1085CC3D95C3C28B CRC64; MCIAYRIHVN NSLIFFAIWH VMKNTSKKLQ NTSDRILRFF VITFAMLACS TLVGLSSAYA ADVQVTKIHP MPVEDDKVSV AFTLCSNDEY LEMPRITVSS DLQTKILSLK HDLKPGTCIG GTTIAETYDV STINTSIVPQ TDSNLYKQET IVDQKIVSQG MSNDGYLVVK LISEQPREGI SMKFNLEFQD VAGNIVEKIN YDITALQDNH VVLNLQNMHS SYGTSILTTD ELTSDSPVEV NIMLHGIGVP GHEDQWTGPK GEIIMFHVVP EFGAIVMLVL TVSVLSIILI SSKFNTLRIS NIQS // ID A9A154_NITMS Unreviewed; 559 AA. AC A9A154; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX12015.1}; GN OrderedLocusNames=Nmar_0115 {ECO:0000313|EMBL:ABX12015.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12015.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12015.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12015.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12015.1; -; Genomic_DNA. DR ProteinModelPortal; A9A154; -. DR STRING; 436308.Nmar_0115; -. DR EnsemblBacteria; ABX12015; ABX12015; Nmar_0115. DR KEGG; nmr:Nmar_0115; -. DR eggNOG; arCOG00933; Archaea. DR eggNOG; COG1964; LUCA. DR HOGENOM; HOG000231128; -. DR KO; K06937; -. DR OMA; GVRHIQL; -. DR BioCyc; NMAR436308:GI3J-118-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 117 277 Radical_SAM. {ECO:0000259|Pfam:PF04055}. SQ SEQUENCE 559 AA; 63741 MW; 5CEC5EACD4E314E5 CRC64; MPIVGMALIQ ISNQTTKNLG KKSTIRFTQS ICPDCNMILD AEVFERDNKV FMSKVCPTHG ECEELYFGSY ELYKKFSTYW MDGKGAHAPN VMIDKCSCPN NCGLCSNHLS HSGLANMIVT NRCDLTCWYC FFYVKKGLEG AYMYEPDHTQ IRGMMKTLRA ERPIPGNSMQ ITGGEPMLRE DIADVIKIMK EEGVDHIQMN TNGIRHAMDP EAAREVRLAG CNNLYLSFDG VTARTNPKNH WEIPYALDSC RKTGTTVVFV PTVIKSINDH ELGGIIRYAQ KNMDVVHAVN FQPVSLTGRM GKSEREKYRI TVPDCIQRIE EQTNGEVTID DWFPVPSCMP LTNVIEAFSS KPKYELSIHF ACGAGTYIFE DEDTKKFVPL TKFCDIQGML ELFEDKAEEI RSGKNKYFTM LEVVRKLKGF VDSKKQPAGL DLAKMFGNIL MKRSFDSVGS WHVKGLFLGM MHFQDKYNED LERLQRCDIH YVTPDLRIVP FCAFNVIPEW YRDRIQKKYS ITVEEWEERE GVKLEDGLYR GLMRRGAGDE LAAGCAKSEM FHQAAQATM // ID A9A2Z9_NITMS Unreviewed; 556 AA. AC A9A2Z9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Ig family protein {ECO:0000313|EMBL:ABX12127.1}; GN OrderedLocusNames=Nmar_0231 {ECO:0000313|EMBL:ABX12127.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12127.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12127.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12127.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12127.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0231; -. DR EnsemblBacteria; ABX12127; ABX12127; Nmar_0231. DR KEGG; nmr:Nmar_0231; -. DR eggNOG; arCOG06534; Archaea. DR eggNOG; ENOG410YVDI; LUCA. DR HOGENOM; HOG000109863; -. DR OMA; YSEYSSI; -. DR BioCyc; NMAR436308:GI3J-237-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR InterPro; IPR015919; Cadherin-like. DR InterPro; IPR008009; He_PIG. DR Pfam; PF05345; He_PIG; 1. DR SUPFAM; SSF49313; SSF49313; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 522 546 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 556 AA; 62429 MW; B4C78881C4C229FF CRC64; MNTKLGIFAV FSLSLLMLTP AYASVTSFSL DRSFYTIDET FTFSGEQEGK ETVYIIIRDS SGNFKGMLSD PAPGQGEFSV IPRPVENFFS SQGIYNATAF TDSQKEEEGL TIKIEYDGKK IFEMPDFVLE LKPISDKEID ELKTVSFTVS ITDSSVEDEV YSLEKNPPSG ATIDSSTGKF VWTPSGSHGN NPGAEYTFDI VVTRGSQTDR QTVTITVNEP VAVNPEPKET TETVPEPKEA VPEPKEAVPE PKELEIPAPF VDETKDPQSY VDRYNDEEGY KKWFDDNYSE YSSIYQAVGL EEPLEIPAPF VDETKDPQSY VDRYNDEEGY KKWFDDNYSE YSSIYQAVGL EEPKVLAPFV DPNLDPQYYV ERYNNEITYK DWFDKTYPEM TIFEAVGLGE PKIVEKEFGE CGVGTNLVNG ECTVIPIESN DGGGCLIATA AYGSEMAPQV QLLREIRDNQ LMNTESGMSF MTGFNQIYYS FSPYIADMQR ENPMFKEAIK IGITPLLSSL SVMKYAESES QVLGYGVGVI LMNIGIYFAV PAMLFFGIKK VRRVRF // ID A9A4S9_NITMS Unreviewed; 87 AA. AC A9A4S9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13383.1}; GN OrderedLocusNames=Nmar_1487 {ECO:0000313|EMBL:ABX13383.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13383.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13383.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13383.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13383.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13383; ABX13383; Nmar_1487. DR KEGG; nmr:Nmar_1487; -. DR BioCyc; NMAR436308:GI3J-1525-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 60 79 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 87 AA; 10001 MW; 8726153D3B75E0BC CRC64; MEIKNQTLFF IGIIVLILGI LIIIFDYPQI QYLENSGESE INFLKDMESF SIYQRLQIEI TVGAGLFVGG IGLLVVSFLK RFENRLR // ID A9A2C9_NITMS Unreviewed; 502 AA. AC A9A2C9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 55. DE SubName: Full=DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABX12840.1}; GN OrderedLocusNames=Nmar_0944 {ECO:0000313|EMBL:ABX12840.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12840.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12840.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12840.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12840.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2C9; -. DR STRING; 436308.Nmar_0944; -. DR EnsemblBacteria; ABX12840; ABX12840; Nmar_0944. DR KEGG; nmr:Nmar_0944; -. DR eggNOG; arCOG00872; Archaea. DR eggNOG; COG1111; LUCA. DR HOGENOM; HOG000108135; -. DR KO; K10896; -. DR OMA; EWINVEL; -. DR BioCyc; NMAR436308:GI3J-972-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF00271; Helicase_C; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX12840.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Helicase {ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX12840.1}; KW Hydrolase {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX12840.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX12840.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 24 186 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 337 493 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. SQ SEQUENCE 502 AA; 56252 MW; 0CF30DD512AFCAD0 CRC64; MTEFIEKRYV KKDSIEKRDY QVNLANQAIS ENCIVVLPTG LGKTAIALQV IAEYLSKGTG GALFLAPTRV LVNQHYEFLK ENLTLDDISL ITGEDTIQKR TKLWNNSVIC ATPEIAKNDL DRGIVSSNQF NLIIFDEVHR TVGDYAYSGI AERFVNSDGR IVGMTATLPS EKDKATEILT KLKIASVAER TENSPDVKPY TQETNTEWIN VELPPELKTI QTLLKLALDQ RYQTLRDNGI KLAEQQSLSA LLRIRQFVLN QNRRSAKPLF TAIRIHYALN ILEAHGITPF LKFCERAKAK KGAGVKELFE VDPNFTRAVH LAKEAQSRGI EHSKIPKLKD IIESVPGKAL IFTSYRDSVD LIHSKLTELG VSAGILIGKA GETGLKQKKQ IEIVQKFRDG IFDVLIATRV GEEGLDIAEV NQVIFYDNVP SSVRFIQRRG RTGRKDTGKL VVLIAKNTID ETYYWIGKRK MSASKAMGDK MTKVLEKNQE VVSKKTGLDA FI // ID A9A531_NITMS Unreviewed; 224 AA. AC A9A531; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=ExsB family protein {ECO:0000313|EMBL:ABX11940.1}; GN OrderedLocusNames=Nmar_0040 {ECO:0000313|EMBL:ABX11940.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11940.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11940.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11940.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11940.1; -; Genomic_DNA. DR ProteinModelPortal; A9A531; -. DR STRING; 436308.Nmar_0040; -. DR EnsemblBacteria; ABX11940; ABX11940; Nmar_0040. DR KEGG; nmr:Nmar_0040; -. DR eggNOG; arCOG00039; Archaea. DR eggNOG; COG0603; LUCA. DR HOGENOM; HOG000110564; -. DR KO; K06920; -. DR OMA; LRRIYIA; -. DR BioCyc; NMAR436308:GI3J-40-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR018317; QueC. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF06508; QueC; 1. DR PIRSF; PIRSF006293; ExsB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 224 AA; 25038 MW; FF9EB8E0BCDB7CB3 CRC64; MKKAVVVFSG GVDSVCAVSF LKSKYELYGI TFSYGQKANM EISATKSFAK KLGLKQHKII DIGFMKELYG DSNVLTSSKR KIPSKFEYSI VVPIRNAVFL SVASAWAYTL NASLVVYGAH TGDKYYPDCR PAFAKKLESA FNQGEIDGIN SKIRKKIKIW SPYREGLSKS DLLKKGKKVL GDSIFRTWSC YSNKKLHCGV CESCNNRKIA FEKAGVTDKT KYLK // ID A9A310_NITMS Unreviewed; 695 AA. AC A9A310; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 61. DE SubName: Full=MCM family protein {ECO:0000313|EMBL:ABX12138.1}; GN OrderedLocusNames=Nmar_0242 {ECO:0000313|EMBL:ABX12138.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12138.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12138.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12138.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the MCM family. CC {ECO:0000256|RuleBase:RU004070}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12138.1; -; Genomic_DNA. DR ProteinModelPortal; A9A310; -. DR STRING; 436308.Nmar_0242; -. DR EnsemblBacteria; ABX12138; ABX12138; Nmar_0242. DR KEGG; nmr:Nmar_0242; -. DR eggNOG; arCOG00439; Archaea. DR eggNOG; COG1241; LUCA. DR HOGENOM; HOG000224127; -. DR KO; K10726; -. DR OMA; KEAMYIC; -. DR BioCyc; NMAR436308:GI3J-249-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006260; P:DNA replication; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 2. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR031327; MCM. DR InterPro; IPR001208; MCM_dom. DR InterPro; IPR027925; MCM_N. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00493; MCM; 1. DR Pfam; PF14551; MCM_N; 1. DR PRINTS; PR01657; MCMFAMILY. DR SMART; SM00350; MCM; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS50051; MCM_2; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU004070}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU004070}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU004070}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 300 505 MCM. {ECO:0000259|PROSITE:PS50051}. SQ SEQUENCE 695 AA; 78136 MW; AE6B8323539AF32A CRC64; MSSAQTSTFT DSALSDKVKE FLTRFKDANG EYKYVQEIDE MMPKNSKYII VDYNDLIVEP EIISIFSENP DRIFDAFSRA IKEALQTRFP DYAEKIKDEV RVRLVNYPSE RSLRQINAET IGTITSVSGM VVRASEVKPL AKELIFVCPD EHQTKVIQIK GMDVKVPVVC DNPNCKQRDF DLKPEASKFI DFQIMRLQEL PEDLPPGQLP HYIDVTVRQD LVDNARPGDR IVLTGVVRVE QESVTGVTRG HSGLYRLRIE GNNIEFLGGR GSKTSRKIER EEISPEEEKM IKALAASPDV YQRLIDSFAP HIQGQSLIKE AILLLIVGSN QRPLGDGSKI RGDINVFLVG DPGTAKSEML KFCSRIAPRG LYTSGRGSTA AGLTAAVVRD KTGIMMLEAG AVVLGDQGLV SIDEFDKMKP EDRSALHEVM EQQSASIAKG GIVATLNART SILAAANPMY GKYDPFKNIT ENVNLPIPLL TRFDLIFVVR DIPTKERDEQ IARHIIELHT PQGTDKKSVV DVDLLTKYLS YAKRGTPDLT KEAEQKILDY YLEMRNVESE EMITVTPRQL EGIIRLSTAR ARLLMKDKVE EEDAERAIFL IQSMLQDAGV DVNTGKVDLG VLQGKPRSEV SKMQLFMDIL KGLEGDNKIP VEEKAFVKEL EKSEKFTEEE ARNYIRRMLR EASIYESKPG HYNRV // ID A9A495_NITMS Unreviewed; 170 AA. AC A9A495; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12584.1}; GN OrderedLocusNames=Nmar_0688 {ECO:0000313|EMBL:ABX12584.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12584.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12584.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12584.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12584.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12584; ABX12584; Nmar_0688. DR KEGG; nmr:Nmar_0688; -. DR BioCyc; NMAR436308:GI3J-713-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 170 AA; 19433 MW; BE5403A95ECCC8AE CRC64; MTKTSDEMKD LVEDFIKVTN INYEDQTEKV REKSNLIEWQ FRVGTNVIVS KNANRTDRIH LNVNMRFPPD DSKLLVMKNP SFSKAVMDIS EICTVCNVGH QWVKDKENIA GLAIFSHVDE QVLNRVSFHD VWDNVARVTA HIQKILRANF SGFAGQSNPA DETTEKSMYG // ID A9A3E0_NITMS Unreviewed; 308 AA. AC A9A3E0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 43. DE SubName: Full=Periplasmic binding protein {ECO:0000313|EMBL:ABX12872.1}; GN OrderedLocusNames=Nmar_0976 {ECO:0000313|EMBL:ABX12872.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12872.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12872.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12872.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12872.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3E0; -. DR STRING; 436308.Nmar_0976; -. DR EnsemblBacteria; ABX12872; ABX12872; Nmar_0976. DR KEGG; nmr:Nmar_0976; -. DR eggNOG; arCOG04233; Archaea. DR eggNOG; COG0614; LUCA. DR HOGENOM; HOG000106336; -. DR KO; K02016; -. DR OMA; CDVCAVD; -. DR BioCyc; NMAR436308:GI3J-1004-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002491; ABC_transptr_periplasmic_BD. DR Pfam; PF01497; Peripla_BP_2; 1. DR PROSITE; PS50983; FE_B12_PBP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 292 Fe/B12 periplasmic-binding. FT {ECO:0000259|PROSITE:PS50983}. SQ SEQUENCE 308 AA; 34889 MW; B6FFEDC690D108CB CRC64; MTVNRIVSFL PSATELLYEF GVQNKVYGVT HECKYPSEAI SKPQVISSVI DSEKLSSNEI NTQTCQLLNE GKDIFILNEK NLKDANPDLI ISQETCEVCA AYTNQVNKAL QILERKPIIH SMDPHNISEI IESVIKLGKI LEEESKAKEI SESLEKRIQK IKNKVHTNIP KILAIEWIEP FFTAGHWVPE MIEIAGGKNT ISKTGEHSRR MDFEEISNSD ADIIILMPCG FDTKRTVSEY KDILERDEKW NMLKAVQNQA VFAVDANSFF SKPSIRTVEG IEILAKIIHP ETFDDVNVSE NSFANVYQ // ID A9A4S2_NITMS Unreviewed; 177 AA. AC A9A4S2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13376.1}; GN OrderedLocusNames=Nmar_1480 {ECO:0000313|EMBL:ABX13376.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13376.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13376.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13376.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13376.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1480; -. DR EnsemblBacteria; ABX13376; ABX13376; Nmar_1480. DR KEGG; nmr:Nmar_1480; -. DR eggNOG; arCOG08637; Archaea. DR eggNOG; ENOG41111J5; LUCA. DR HOGENOM; HOG000105051; -. DR OMA; WPEQNAT; -. DR BioCyc; NMAR436308:GI3J-1517-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 177 AA; 19948 MW; CDC8F5A7BFB1AB0A CRC64; MVRKAMLALG AIPVVIALLI SVPLLTKNEI PISAANSFDK LDIEYTKHQL RTVEYGVTER TGAEKTEILL IKNDGELKYS VTELGYLQPD IRSQLDEKKL NKIKALIKET GFMEIPVDSF PILEDVKEFQ KSNVKITLNG RNQEIHWPEQ NATSGFIPPI ITMVETELDA IISDIRE // ID A9A151_NITMS Unreviewed; 54 AA. AC A9A151; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12012.1}; GN OrderedLocusNames=Nmar_0112 {ECO:0000313|EMBL:ABX12012.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12012.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12012.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12012.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12012.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0112; -. DR EnsemblBacteria; ABX12012; ABX12012; Nmar_0112. DR KEGG; nmr:Nmar_0112; -. DR eggNOG; arCOG08724; Archaea. DR eggNOG; ENOG4110ZWJ; LUCA. DR HOGENOM; HOG000107769; -. DR OMA; MACFCGC; -. DR BioCyc; NMAR436308:GI3J-115-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 54 AA; 6045 MW; BB0BB586924C7A66 CRC64; MACFCGCETY EKDDNGFKIA CVKCGHGPQN HDEEFRAAAR KNESQSQKRD ADFG // ID A9A2J8_NITMS Unreviewed; 309 AA. AC A9A2J8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Transcription factor TFIIB cyclin-related {ECO:0000313|EMBL:ABX13237.1}; GN OrderedLocusNames=Nmar_1341 {ECO:0000313|EMBL:ABX13237.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13237.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13237.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13237.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13237.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2J8; -. DR STRING; 436308.Nmar_1341; -. DR EnsemblBacteria; ABX13237; ABX13237; Nmar_1341. DR KEGG; nmr:Nmar_1341; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; PANTKED; -. DR BioCyc; NMAR436308:GI3J-1375-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.472.10; -; 2. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR013150; TFIIB_cyclin. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SMART; SM00385; CYCLIN; 2. DR SUPFAM; SSF47954; SSF47954; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 120 201 CYCLIN. {ECO:0000259|SMART:SM00385}. FT DOMAIN 213 297 CYCLIN. {ECO:0000259|SMART:SM00385}. SQ SEQUENCE 309 AA; 34497 MW; EBC487B7F0C418D5 CRC64; MKQVLEYCFK NNHTSPITDI TTGEICCSDC GTVIVEKTID RSNGLPANTK EDFMNRTQYG PPTKIAISDM SKTSMISKKN QDSAGQKLHS DAKRHFSRLR LWDSRSKSDR AERNLVKAFS ILDAYASNLG IPENAKEHAA YIYRKALEKN LIRGSSIHTM VAGSVYVTCK QLGIPRSADD TTRVSNISRR RLSKAYKRLV KNLDLKIDPS ETDFVTQVAN SLSVSEKTKR LAIKIINDVK KEKIHVGKRP LGITAAAVYL SAINYDEPKS MAKISKVTNI STVTIRKIIK LVRPFAAKYI KSIDVGITQ // ID A9A416_NITMS Unreviewed; 129 AA. AC A9A416; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12200.1}; GN OrderedLocusNames=Nmar_0304 {ECO:0000313|EMBL:ABX12200.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12200.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12200.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12200.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12200.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0304; -. DR EnsemblBacteria; ABX12200; ABX12200; Nmar_0304. DR KEGG; nmr:Nmar_0304; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR OMA; KSIRWAG; -. DR BioCyc; NMAR436308:GI3J-318-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 129 AA; 15251 MW; F2A440B40DF680FA CRC64; MVEDYKSFLE VLMVSNKNIR FSAMCNLKGE LLFQKRRDDI RELFSLEETK EQLSRTIESW KSRVEIKDKV GRPLYSVTSY EKIKRMTIPI DEEHLLFISI DNKEEEVEMF KNINIKNISS LLDIGPTKS // ID A9A4Z8_NITMS Unreviewed; 509 AA. AC A9A4Z8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Peptidylprolyl isomerase {ECO:0000313|EMBL:ABX11907.1}; DE EC=5.2.1.8 {ECO:0000313|EMBL:ABX11907.1}; GN OrderedLocusNames=Nmar_0007 {ECO:0000313|EMBL:ABX11907.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11907.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11907.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11907.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11907.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Z8; -. DR STRING; 436308.Nmar_0007; -. DR EnsemblBacteria; ABX11907; ABX11907; Nmar_0007. DR KEGG; nmr:Nmar_0007; -. DR eggNOG; arCOG04767; Archaea. DR eggNOG; COG0652; LUCA. DR HOGENOM; HOG000110296; -. DR KO; K03768; -. DR OMA; SEEHDIA; -. DR BioCyc; NMAR436308:GI3J-7-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-EC. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 2.40.100.10; -; 1. DR InterPro; IPR029000; Cyclophilin-like_dom. DR InterPro; IPR024936; Cyclophilin-type_PPIase. DR InterPro; IPR020892; Cyclophilin-type_PPIase_CS. DR InterPro; IPR002130; Cyclophilin-type_PPIase_dom. DR PANTHER; PTHR11071; PTHR11071; 2. DR Pfam; PF00160; Pro_isomerase; 1. DR PRINTS; PR00153; CSAPPISMRASE. DR SUPFAM; SSF50891; SSF50891; 1. DR PROSITE; PS00170; CSA_PPIASE_1; 1. DR PROSITE; PS50072; CSA_PPIASE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX11907.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 479 503 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 34 185 PPIase cyclophilin-type. FT {ECO:0000259|PROSITE:PS50072}. SQ SEQUENCE 509 AA; 56347 MW; 8D5ACBF90F9E4032 CRC64; MKKIILAITF SLLFMGIVNQ TTAQSVEVNP IKIMDPVVII ETSLGNITIG FFPNDAPKHV ENFLKLSTSG FYDGTLFHRI IPGFMIQGGD PNTIDGDSST WGTGGPDERL DAEFNNIKHN RGIVSMARSA DPNSGGSQFF IVHQNSNFLD EQYTVFGRII TEESFETLDK IASVSTGSRD EPINPEQVRI IKVSVVPRAD IPDLIELTEP DRIQTNVEPS TGSQLFESEE HDIAFSAPAG WLLQQPEKTQ ENTPDVVAVG PKVGTVNPVI SLTILPTNGK IIDDIISEKN EELQPLAESR GLNIISQEQI TINDKDAYVT NAQGVFSANG QDYDVKFKEV IIYGSDNYYT FSYSNGVDDF DSQIERFNET IDSFKKLSED SANSEENGGC LIATATFGSE LAPQVQQLRE LRDNTILETE SGTAFMSGFN QLYYSFSPTI ADLERESPLF KEIVKLTITP MLSSLSILKY AEINSEEEMI SYGVGIILMN IGMYFVAPTI IIYKIRKLN // ID A9A3D7_NITMS Unreviewed; 299 AA. AC A9A3D7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12869.1}; GN OrderedLocusNames=Nmar_0973 {ECO:0000313|EMBL:ABX12869.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12869.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12869.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12869.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12869.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0973; -. DR EnsemblBacteria; ABX12869; ABX12869; Nmar_0973. DR KEGG; nmr:Nmar_0973; -. DR eggNOG; arCOG08728; Archaea. DR eggNOG; ENOG4110ZS3; LUCA. DR HOGENOM; HOG000107880; -. DR OMA; PNIGYGG; -. DR BioCyc; NMAR436308:GI3J-1001-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 299 AA; 32384 MW; 942555C81DA41C0A CRC64; MKTAITAIAA ILLVATTVSS AYAEVPGWVK NNAGWWAEGV ISESEFLTGI AFLISDGIIT VPTTTVSSET ADSVPAWVKN NAGWWADGTI SDGEFVNGVQ HLIQFGLLSV SLTSEQPIMS DEPKNTDSKL ASLEAELEQC SEITKAYKRL DCEKPLKQAI KVHEYKSGAQ KFDLGPITYY WTGVGSEGNE FEITATGQPL LSVRMLAENT SSEIAALNCT SPQICAYDVW DGSKAYKYSG MDFTSGQIVL NPGDAREFNI LFGPNIGYGG TEFEYDSSKD YVFRIAEDFG SASIPLNLE // ID A9A5N0_NITMS Unreviewed; 130 AA. AC A9A5N0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12741.1}; GN OrderedLocusNames=Nmar_0845 {ECO:0000313|EMBL:ABX12741.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12741.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12741.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12741.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12741.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0845; -. DR EnsemblBacteria; ABX12741; ABX12741; Nmar_0845. DR KEGG; nmr:Nmar_0845; -. DR eggNOG; arCOG08709; Archaea. DR eggNOG; ENOG41110SJ; LUCA. DR HOGENOM; HOG000107287; -. DR OMA; AIMAGEG; -. DR BioCyc; NMAR436308:GI3J-872-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 45 64 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 93 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 105 124 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 130 AA; 13360 MW; 86CD33435F89EBE6 CRC64; MALTAALVIT GIAIGLLLIY AADVAVAMSS DSDYGFLPLD HMQRGMGLGA PALILPIIAF FISLKEPSKG LGVMIIITGI LIILGGIVVM VNPAPSAETS DRDPMASMAM MLIPAIIQLA LGGIKIAKSN // ID A9A4T7_NITMS Unreviewed; 354 AA. AC A9A4T7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13391.1}; GN OrderedLocusNames=Nmar_1495 {ECO:0000313|EMBL:ABX13391.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13391.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13391.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13391.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13391.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1495; -. DR EnsemblBacteria; ABX13391; ABX13391; Nmar_1495. DR KEGG; nmr:Nmar_1495; -. DR eggNOG; arCOG08642; Archaea. DR eggNOG; ENOG41111NR; LUCA. DR HOGENOM; HOG000105107; -. DR OMA; PRILEVI; -. DR BioCyc; NMAR436308:GI3J-1533-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 354 AA; 39121 MW; 3347EB2B9AF00B0A CRC64; MLKFALAAFL VFLLIPFSQS FAQEYSDTAP TLAVSITSEA PYVYQDSDGY TVVVGTVKNN NSLSSVTNVM IQVNFFDDFD PNPLEVVSER STLEVIPPNG ESTFSIKSQT PNPDITDASI SLLGFDSSSA KEKGLTVYSS EITVDNRLNF KGVIENGGAP SSNTNVYMAL YDAFEPPRIL EVITLELDDV ELDSEVSFNV NREIDARAVG FLLFAESDVF SSNFIDVEIP EPQSLSKLVS ISSVYVRDSE GKQLSEIPVG TIVNVQSKLW IQFAADQSTN ETPYTYYIQV KESTTGAVEY IGKDDGRFIG TGNQYPAIDW MPQKSGLYFL ETFVWDRNNI PIAERGPFAL LHIQ // ID A9A1U4_NITMS Unreviewed; 345 AA. AC A9A1U4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 59. DE RecName: Full=Putative methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; DE Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678}; DE Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; DE EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678}; DE AltName: Full=MTNA-like protein {ECO:0000256|HAMAP-Rule:MF_01678}; DE AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; GN OrderedLocusNames=Nmar_0169 {ECO:0000313|EMBL:ABX12065.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12065.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12065.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12065.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the interconversion of methylthioribose-1- CC phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- CC P). {ECO:0000256|HAMAP-Rule:MF_01678}. CC -!- CATALYTIC ACTIVITY: S-methyl-5-thio-alpha-D-ribose 1-phosphate = CC S-methyl-5-thio-D-ribulose 1-phosphate. {ECO:0000256|HAMAP- CC Rule:MF_01678}. CC -!- SIMILARITY: Belongs to the EIF-2B alpha/beta/delta subunits CC family. MtnA subfamily. {ECO:0000256|HAMAP-Rule:MF_01678}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12065.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U4; -. DR SMR; A9A1U4; 1-342. DR STRING; 436308.Nmar_0169; -. DR EnsemblBacteria; ABX12065; ABX12065; Nmar_0169. DR KEGG; nmr:Nmar_0169; -. DR eggNOG; arCOG01123; Archaea. DR eggNOG; COG0182; LUCA. DR HOGENOM; HOG000224730; -. DR KO; K08963; -. DR OMA; KVFNPAF; -. DR BioCyc; NMAR436308:GI3J-170-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046523; F:S-methyl-5-thioribose-1-phosphate isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. DR GO; GO:0019284; P:L-methionine biosynthetic process from S-adenosylmethionine; IEA:UniProtKB-HAMAP. DR Gene3D; 1.20.120.420; -; 1. DR HAMAP; MF_01678; Salvage_MtnA; 1. DR InterPro; IPR000649; IF-2B-related. DR InterPro; IPR005251; IF-M1Pi. DR InterPro; IPR011559; Initiation_fac_2B_a/b/d. DR InterPro; IPR027363; M1Pi_N. DR Pfam; PF01008; IF-2B; 1. DR TIGRFAMs; TIGR00524; eIF-2B_rel; 1. DR TIGRFAMs; TIGR00512; salvage_mtnA; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_01678}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Initiation factor {ECO:0000313|EMBL:ABX12065.1}; KW Isomerase {ECO:0000256|HAMAP-Rule:MF_01678, KW ECO:0000313|EMBL:ABX12065.1}; KW Methionine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01678}; KW Protein biosynthesis {ECO:0000313|EMBL:ABX12065.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT REGION 46 48 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_01678}. FT REGION 245 246 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_01678}. FT ACT_SITE 235 235 Proton donor. {ECO:0000256|HAMAP- FT Rule:MF_01678}. FT BINDING 89 89 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01678}. FT BINDING 194 194 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01678}. FT SITE 155 155 Transition state stabilizer. FT {ECO:0000256|HAMAP-Rule:MF_01678}. SQ SEQUENCE 345 AA; 37425 MW; 8FB2B5292C9F6DF6 CRC64; MVLKTVEWKN NKVVMIDQTK LPNELVFVEF DDFNQVADAI KNLVVRGAPA IGVSGAFGLA LAVLQSDAET KQDLISYLEN ARKILFETRP TAINLGWGLN KIMDVAKHCN SIQEIKESVI AEAKKMAEDD IEINKTMGKN GSVLFDNNDT IMTHCNAGAL ATVAYGTALG VIRATKESGK QVKVIATETR PIQQGSRLTA FELQHDGFDV SLIPDTAVGY SMANGLVNKV VVGADRIVKT GHVFNKIGTY QVATMAKQHG IPFYVAAPLS TIDLKSKADE VIIEMRKGSE VTGIGDKKTA PDDVNVINPA FDMTPPELIT GIITEKGVVS SPYEESIQKL FDENN // ID A9A386_NITMS Unreviewed; 217 AA. AC A9A386; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12515.1}; GN OrderedLocusNames=Nmar_0619 {ECO:0000313|EMBL:ABX12515.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12515.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12515.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12515.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12515.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12515; ABX12515; Nmar_0619. DR KEGG; nmr:Nmar_0619; -. DR eggNOG; arCOG03727; Archaea. DR eggNOG; ENOG4111ZM0; LUCA. DR HOGENOM; HOG000108502; -. DR OMA; AILIDCK; -. DR BioCyc; NMAR436308:GI3J-643-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.1350.10; -; 1. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR InterPro; IPR011856; tRNA_endonuc-like_dom. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 217 AA; 24610 MW; 0CB585CB51B36CA5 CRC64; MIHEFKLKIN PKMITGLKGI IIGGVSPKDF SAVTKISEDE SKSILDEFIK NNIGTKQDSF YYFEEGDKLK IAISLLEKGF PVDEISIALD WKDFEGLTAE ILSSKNFAVM RNMILTKPRM EIDVVGVRLG VAILIDCKHW KRYSVSSLSS VVKKQIERTR QYVAKTEGAI AVPVIVTLYQ DKVDFIENVP IVPIFQFSSF VDEFYGNIDQ MKTIEKD // ID A9A643_NITMS Unreviewed; 222 AA. AC A9A643; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 47. DE RecName: Full=Ribosomal RNA small subunit methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; DE EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00554}; DE AltName: Full=16S rRNA (pseudouridine-N1-)-methyltransferase Nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; GN Name=nep1 {ECO:0000256|HAMAP-Rule:MF_00554}; GN OrderedLocusNames=Nmar_1625 {ECO:0000313|EMBL:ABX13521.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13521.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13521.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13521.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Methyltransferase involved in ribosomal biogenesis. CC Specifically catalyzes the N1-methylation of the pseudouridine CC corresponding to position 914 in M.jannaschii 16S rRNA. CC {ECO:0000256|HAMAP-Rule:MF_00554}. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + a pseudouridine in CC 16S rRNA = S-adenosyl-L-homocysteine + a N(1)-methylpseudouridine CC in 16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00554}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00554}. CC -!- SIMILARITY: Belongs to the NEP1 family. {ECO:0000256|HAMAP- CC Rule:MF_00554}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13521.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1625; -. DR EnsemblBacteria; ABX13521; ABX13521; Nmar_1625. DR KEGG; nmr:Nmar_1625; -. DR eggNOG; arCOG04122; Archaea. DR eggNOG; COG1756; LUCA. DR HOGENOM; HOG000109939; -. DR KO; K14568; -. DR OMA; VYVHTRN; -. DR BioCyc; NMAR436308:GI3J-1670-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0070037; F:rRNA (pseudouridine) methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00554; NEP1; 1. DR InterPro; IPR029028; Alpha/beta_knot_MTases. DR InterPro; IPR005304; Rbsml_bgen_MeTrfase_EMG1/NEP1. DR InterPro; IPR023503; Ribosome_NEP1_arc. DR PANTHER; PTHR12636; PTHR12636; 2. DR Pfam; PF03587; EMG1; 1. DR SUPFAM; SSF75217; SSF75217; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000256|HAMAP-Rule:MF_00554}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00554}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00554}; KW rRNA processing {ECO:0000256|HAMAP-Rule:MF_00554}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00554}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00554}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00554}. FT REGION 198 203 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00554}. FT BINDING 177 177 S-adenosyl-L-methionine; via amide FT nitrogen. {ECO:0000256|HAMAP- FT Rule:MF_00554}. FT BINDING 182 182 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000256|HAMAP- FT Rule:MF_00554}. FT SITE 60 60 Interaction with substrate rRNA. FT {ECO:0000256|HAMAP-Rule:MF_00554}. FT SITE 62 62 Stabilizes Arg-xx. {ECO:0000256|HAMAP- FT Rule:MF_00554}. FT SITE 104 104 Interaction with substrate rRNA. FT {ECO:0000256|HAMAP-Rule:MF_00554}. FT SITE 108 108 Interaction with substrate rRNA. FT {ECO:0000256|HAMAP-Rule:MF_00554}. SQ SEQUENCE 222 AA; 25427 MW; C586D5362B7E1042 CRC64; MISVVLAESA LELVPSELKH HQSVISHARK LGKLSSEILL DNSWHFAAMK GIINELKRGR PDLVHFSILE ATTIPLYLKN KIKLYVHTID DKVIYFGQNV HVPKSYHRFA GLIEKLYKEK KIIANNETLL EIKNKTFSEL IDEINPSKII GFSTKGTENS YEKIVSEINT DYCLVFGGFQ KGHFSDSIEK KFAQMYSVGN EPFEGHTVVA RMLYEYEKTI FM // ID A9A2N8_NITMS Unreviewed; 234 AA. AC A9A2N8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 48. DE SubName: Full=Ribosomal RNA adenine methylase transferase {ECO:0000313|EMBL:ABX13277.1}; GN OrderedLocusNames=Nmar_1381 {ECO:0000313|EMBL:ABX13277.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13277.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13277.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13277.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13277.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2N8; -. DR STRING; 436308.Nmar_1381; -. DR EnsemblBacteria; ABX13277; ABX13277; Nmar_1381. DR KEGG; nmr:Nmar_1381; -. DR eggNOG; arCOG04131; Archaea. DR eggNOG; COG0030; LUCA. DR HOGENOM; HOG000227962; -. DR KO; K02528; -. DR OMA; SVIMVQK; -. DR BioCyc; NMAR436308:GI3J-1416-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000179; F:rRNA (adenine-N6,N6-)-dimethyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR001737; KsgA/Erm. DR InterPro; IPR020598; rRNA_Ade_methylase_Trfase_N. DR InterPro; IPR029063; SAM-dependent_MTases. DR PANTHER; PTHR11727; PTHR11727; 1. DR Pfam; PF00398; RrnaAD; 1. DR SMART; SM00650; rADc; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS51689; SAM_RNA_A_N6_MT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13277.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13277.1}. FT DOMAIN 17 178 rADc. {ECO:0000259|SMART:SM00650}. SQ SEQUENCE 234 AA; 26379 MW; 48B65878FD5692B7 CRC64; MIKRKLLGQH FLNSQLIAES IVSEAKITKN DIVYEIGTGL GVLTPLLCKK AKKVISVDAD ENLIKKAKNT FSDIDNLVLK SGDGFKKKDT FSVFVSNLPY SKSKDAIEWL AQRTFSHGVI MVQKEFAQKL VAKSKDRKAI SIIATHAFDI EKISNVNKNN FSPPPKVDSV VLKITKKTDM DKTLISTINE IFSYRRKTVK NILKQFHKES DLEKRVDTLT GDEIVNLAKQ ILKK // ID A9A5E8_NITMS Unreviewed; 218 AA. AC A9A5E8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=DNA repair helicase {ECO:0000313|EMBL:ABX12347.1}; GN OrderedLocusNames=Nmar_0451 {ECO:0000313|EMBL:ABX12347.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12347.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12347.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12347.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12347.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0451; -. DR EnsemblBacteria; ABX12347; ABX12347; Nmar_0451. DR KEGG; nmr:Nmar_0451; -. DR eggNOG; arCOG07871; Archaea. DR eggNOG; ENOG410ZQUJ; LUCA. DR HOGENOM; HOG000108013; -. DR OMA; CIEYDRC; -. DR BioCyc; NMAR436308:GI3J-470-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:ABX12347.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Helicase {ECO:0000313|EMBL:ABX12347.1}; KW Hydrolase {ECO:0000313|EMBL:ABX12347.1}; KW Nucleotide-binding {ECO:0000313|EMBL:ABX12347.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 218 AA; 25569 MW; 266B141E1E6A317D CRC64; MGLRDIELKE EYRSDIDDIV AEFFFPCLGQ CIEYDRCVDF LSIQTLATIA MAFDNFAIGK AKLRMVTGHR FRTEDLNLFT KLFSEKYTKS FEGKLIKDSK IQKLQNIVNK GQIELKIAIP NSEQVADSFS ERIGVFRDDK DDAVAFTGTS RESFSTQTRD FESVDVFTSW NDKSRVQRKM KDFEELWENQ TKHLEVYDFM YAEEKNLLKY STDWVLKD // ID A9A1T3_NITMS Unreviewed; 374 AA. AC A9A1T3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 39. DE SubName: Full=Sulfatase {ECO:0000313|EMBL:ABX12054.1}; GN OrderedLocusNames=Nmar_0156 {ECO:0000313|EMBL:ABX12054.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12054.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12054.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12054.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12054.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T3; -. DR STRING; 436308.Nmar_0156; -. DR EnsemblBacteria; ABX12054; ABX12054; Nmar_0156. DR KEGG; nmr:Nmar_0156; -. DR eggNOG; arCOG02785; Archaea. DR eggNOG; COG3119; LUCA. DR HOGENOM; HOG000023850; -. DR BioCyc; NMAR436308:GI3J-158-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008484; F:sulfuric ester hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.720.10; -; 1. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR032506; DUF4976. DR InterPro; IPR000917; Sulfatase_N. DR Pfam; PF16347; DUF4976; 1. DR Pfam; PF00884; Sulfatase; 1. DR SUPFAM; SSF53649; SSF53649; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 269 Sulfatase. {ECO:0000259|Pfam:PF00884}. FT DOMAIN 280 372 DUF4976. {ECO:0000259|Pfam:PF16347}. SQ SEQUENCE 374 AA; 43307 MW; F54752F0DD7C991C CRC64; MAKENLIIIM IDGGRFDYGL NSKVFQEVEK TSVFFSNSIT YGPHTIAAMH AVFSGCYGTR TGTNSYWSTY DFKKESFVTL TEYLSSNGYF TSADLINELV VPKQGFDEYI VHDEINDDLT LRHKKILSKI QTKNQKGQPS FLYLHYSKIH TGIMNEVLKK YDNFSDEFFD NPDQNKNRYE KLFISAENYL KTILEEIKKL GLDDNSLILI MSDHGVSVGE KFGERAYGAF CYDYTLKTIT HFISKKFQSK RITQQVRTID FMPTILQFLK IPLDNTKEPL DGVSLMPLIN NKKIDEQFAY SETGNPLKEK QPPKIPNVMS IRNSNWKLIY NLHNDSKEMY NLLEDPLELK NLIGTNNEIE SMLWNELLKI QQSN // ID A9A533_NITMS Unreviewed; 252 AA. AC A9A533; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11942.1}; GN OrderedLocusNames=Nmar_0042 {ECO:0000313|EMBL:ABX11942.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11942.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11942.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11942.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11942.1; -; Genomic_DNA. DR ProteinModelPortal; A9A533; -. DR STRING; 436308.Nmar_0042; -. DR EnsemblBacteria; ABX11942; ABX11942; Nmar_0042. DR KEGG; nmr:Nmar_0042; -. DR eggNOG; arCOG01225; Archaea. DR eggNOG; COG1100; LUCA. DR HOGENOM; HOG000110575; -. DR KO; K06883; -. DR OMA; GPNGAQI; -. DR BioCyc; NMAR436308:GI3J-42-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR004130; Gpn. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR21231; PTHR21231; 1. DR Pfam; PF03029; ATP_bind_1; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 252 AA; 27183 MW; 2DED2970C4D5DCA4 CRC64; MKTIFVSGTA GSGKSLLSSK LYDYYTKNGA FTAVLNLDPG VENLPYSCDV DVRDFVDIVS IMQQYDLGPN GALVMAADLI ASKIDDIQNE VNRVNPDYLI VDTPGQIELF AYRSSGRFLI DNISSEEKTS VFLFDGALIT TPVNFVSIAL LATSIRLRLN LPTINVLTKT DLIGANLKNI LQWSSSLSTL ESAIANDADG DTYTLTTNIL RGLNLSGFAQ GLIPISNVTG DGFVNLEGAL SRILNLGEEV ED // ID A9A5I9_NITMS Unreviewed; 251 AA. AC A9A5I9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; GN Name=rps3 {ECO:0000256|HAMAP-Rule:MF_01309}; GN OrderedLocusNames=Nmar_0804 {ECO:0000313|EMBL:ABX12700.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12700.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12700.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12700.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds the lower part of the 30S subunit head. CC {ECO:0000256|HAMAP-Rule:MF_01309}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01309}. CC -!- SIMILARITY: Belongs to the ribosomal protein S3P family. CC {ECO:0000256|HAMAP-Rule:MF_01309}. CC -!- SIMILARITY: Contains 1 KH type-2 domain. {ECO:0000256|HAMAP- CC Rule:MF_01309}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12700.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I9; -. DR STRING; 436308.Nmar_0804; -. DR EnsemblBacteria; ABX12700; ABX12700; Nmar_0804. DR KEGG; nmr:Nmar_0804; -. DR eggNOG; arCOG04097; Archaea. DR eggNOG; COG0092; LUCA. DR HOGENOM; HOG000210611; -. DR KO; K02982; -. DR OMA; DSYKVRE; -. DR BioCyc; NMAR436308:GI3J-831-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1140.32; -; 1. DR Gene3D; 3.30.300.20; -; 1. DR HAMAP; MF_01309_A; Ribosomal_S3_A; 1. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR015946; KH_dom-like_a/b. DR InterPro; IPR004044; KH_dom_type_2. DR InterPro; IPR009019; KH_prok-type. DR InterPro; IPR027488; Ribosomal_S3_arc. DR InterPro; IPR001351; Ribosomal_S3_C. DR InterPro; IPR005703; Ribosomal_S3_euk/arc. DR Pfam; PF07650; KH_2; 1. DR SMART; SM00322; KH; 1. DR SUPFAM; SSF54814; SSF54814; 1. DR SUPFAM; SSF54821; SSF54821; 1. DR TIGRFAMs; TIGR01008; uS3_euk_arch; 1. DR PROSITE; PS50823; KH_TYPE_2; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01309, KW ECO:0000313|EMBL:ABX12700.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01309, KW ECO:0000313|EMBL:ABX12700.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01309}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01309}. FT DOMAIN 17 86 KH type-2. {ECO:0000256|HAMAP- FT Rule:MF_01309, FT ECO:0000259|PROSITE:PS50823}. FT COILED 223 251 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 251 AA; 27949 MW; 69272D8EC2D1D068 CRC64; MSSVKNVIKD NYNMMLLKDY LRDAIKEAGF SHAEISKTPT GTRVALHVTR PGIVIGRKGS GIRDLTDKLA TDFGLKNPQI SVVEIEKPEL SPSVMCNRMA SHLERGTAFR RATMWTLKQI MENGAMGVQI TISGKLRGDR SAFEKHTAGI LPRAGHHAEV IVAEDIAHVG TAMGLIGIRI RIARKEKFVP EFEMKAEKPK KAKQVKDAET GKMRDETAAE KKARTESEQI AIEEEKMKDL ETLEEEEAKL K // ID A9A3J3_NITMS Unreviewed; 83 AA. AC A9A3J3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12925.1}; GN OrderedLocusNames=Nmar_1029 {ECO:0000313|EMBL:ABX12925.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12925.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12925.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12925.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12925.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12925; ABX12925; Nmar_1029. DR KEGG; nmr:Nmar_1029; -. DR BioCyc; NMAR436308:GI3J-1060-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 83 AA; 9514 MW; FDC89FBC3022E361 CRC64; MAIQDDEECK QLIDKLDKGL PPQMIDEIIS YLEKTNNSEF TMTLVKYLNN QNIQSRNSVW ALSSQISMIG EDVTKIKEHL GIN // ID A9A493_NITMS Unreviewed; 628 AA. AC A9A493; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 57. DE RecName: Full=Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; DE EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123}; DE AltName: Full=Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; GN Name=argS {ECO:0000256|HAMAP-Rule:MF_00123}; GN OrderedLocusNames=Nmar_0686 {ECO:0000313|EMBL:ABX12582.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12582.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12582.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12582.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-arginine + tRNA(Arg) = AMP + CC diphosphate + L-arginyl-tRNA(Arg). {ECO:0000256|HAMAP- CC Rule:MF_00123}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00123}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|HAMAP-Rule:MF_00123, CC ECO:0000256|RuleBase:RU363038}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12582.1; -; Genomic_DNA. DR ProteinModelPortal; A9A493; -. DR STRING; 436308.Nmar_0686; -. DR EnsemblBacteria; ABX12582; ABX12582; Nmar_0686. DR KEGG; nmr:Nmar_0686; -. DR eggNOG; arCOG00487; Archaea. DR eggNOG; COG0018; LUCA. DR HOGENOM; HOG000247213; -. DR KO; K01887; -. DR OMA; FLERSTQ; -. DR BioCyc; NMAR436308:GI3J-711-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004814; F:arginine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006420; P:arginyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.30.1360.70; -; 1. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00123; Arg_tRNA_synth; 1. DR InterPro; IPR001412; aa-tRNA-synth_I_CS. DR InterPro; IPR001278; Arg-tRNA-ligase. DR InterPro; IPR005148; Arg-tRNA-synth_N. DR InterPro; IPR008909; DALR_anticod-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR PANTHER; PTHR11956; PTHR11956; 2. DR Pfam; PF03485; Arg_tRNA_synt_N; 1. DR Pfam; PF05746; DALR_1; 1. DR Pfam; PF00750; tRNA-synt_1d; 1. DR PRINTS; PR01038; TRNASYNTHARG. DR SMART; SM01016; Arg_tRNA_synt_N; 1. DR SMART; SM00836; DALR_1; 1. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF55190; SSF55190; 1. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123, KW ECO:0000256|RuleBase:RU363038, ECO:0000313|EMBL:ABX12582.1}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00123, KW ECO:0000256|RuleBase:RU363038}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00123}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00123, KW ECO:0000256|RuleBase:RU363038, ECO:0000313|EMBL:ABX12582.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00123, KW ECO:0000256|RuleBase:RU363038}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00123, KW ECO:0000256|RuleBase:RU363038}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 90 Arg_tRNA_synt_N. FT {ECO:0000259|SMART:SM01016}. FT DOMAIN 512 628 DALR_1. {ECO:0000259|SMART:SM00836}. FT MOTIF 126 136 "HIGH" region. {ECO:0000256|HAMAP- FT Rule:MF_00123}. SQ SEQUENCE 628 AA; 70767 MW; 15E8BBB8B13E2010 CRC64; MTFKSILDEI ENNLNKILDD LSISDVKFSV EPAKPGFGDV SSNVSFLLAK QLKKSPKEIS EMLSEKYSQC VSTLVSKSES HPSGYLNFYA DWPKLNQLIL SESNLPEFGD VDIGKNSTIV VEHTSVNPNK ALHIGHIRNI IIGDTISRIL QKANYKVNVL NYVDDSGLQV ADIIVGFKHF GYPIEPPQGK KFDHYCGDDV YVKTTEKYEQ DSSLEEIRKN VLKELEDGTS ETAQFADKIT RRVLSNQLET CWNLAVSYDC LNFESQIIRS GLWDGIFEKL KEMNLVEFEN DGKNAGCWVI RGEGKEEDKV IVRSNGTATY IAKDIPYAAW KLGLLDDPFH YEKYEKEQPN SRVLWQTILN DGASESQNFS GDKVITVIDS RQARLQKIIT SLMGKFKSIP DAYVHLGYES VTLSSDTAKI LGLETDGKQA QMSGRKGLYV NADSVYDLLK EKTTEETKKR HPEMDDSEIE KISHSVSVAT LRYEMIKQDL DKIIAFDLTK SLSLEGDTAP YIQYTHARAS RILEKSGRTP SIDVDFSLLK EQSEIDLVKM IGLFNLQVRD AANNLSPKVI SRYCHDLAVT FNSFYEKSKV LDLGDEKLEN SRLCLVNSFK ITIEKALNLL GISAPDKM // ID A9A4G6_NITMS Unreviewed; 90 AA. AC A9A4G6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12655.1}; GN OrderedLocusNames=Nmar_0759 {ECO:0000313|EMBL:ABX12655.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12655.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12655.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12655.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12655.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0759; -. DR EnsemblBacteria; ABX12655; ABX12655; Nmar_0759. DR KEGG; nmr:Nmar_0759; -. DR eggNOG; arCOG04290; Archaea. DR eggNOG; COG1656; LUCA. DR BioCyc; NMAR436308:GI3J-785-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.1010; -; 1. DR InterPro; IPR002782; Mut7-C_RNAse_dom. DR InterPro; IPR029060; PIN_domain-like. DR Pfam; PF01927; Mut7-C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 85 Mut7-C. {ECO:0000259|Pfam:PF01927}. SQ SEQUENCE 90 AA; 10465 MW; FB21ACBC88D6EE2A CRC64; MKILVDENLD GMDDRLKEHG YDALSVRKLN MAGEKLGSDF SIIQYAQKNH LIIVTKDKEF RKASEENDFP LILLDDEEIL KVIIEKLKKF // ID A9A546_NITMS Unreviewed; 652 AA. AC A9A546; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11955.1}; GN OrderedLocusNames=Nmar_0055 {ECO:0000313|EMBL:ABX11955.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11955.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11955.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11955.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11955.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0055; -. DR EnsemblBacteria; ABX11955; ABX11955; Nmar_0055. DR KEGG; nmr:Nmar_0055; -. DR eggNOG; arCOG01695; Archaea. DR eggNOG; COG1293; LUCA. DR HOGENOM; HOG000110643; -. DR OMA; FFHADIP; -. DR BioCyc; NMAR436308:GI3J-55-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR008532; DUF814. DR Pfam; PF05670; DUF814; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 438 530 DUF814. {ECO:0000259|Pfam:PF05670}. SQ SEQUENCE 652 AA; 73492 MW; 95554BC504E81FEA CRC64; MIGMALSGIE LRYLVDKISK QVEDYYVSNI YGITKDSILF KLHHTEKSDL FMMISTSGVW LTEVKIDQVE PNKLLKRLRS DLLRLKLKKI EQIGAERIAY FRFEGFGKEF VLVGEFFGDG NILLCNNEMK ILALQHSIDV RHRKLSVGLE YAQPPQSGLD IFNLAEKDFE DIKTTELVAA KWFGRTLGLP KKYVEGIFEI ANVDPKKIGN LLTEEEIEKI FETTKKTVSD IVSENHDPII VRNEKTEVLP IQLGKIEGEI TKVNSFIEGL DTVFTQNIVD KGKSIQTSGS DKKIKELETQ ISEQEKAIQT VKERSKNITN VANSLYDMIS KGILSIEDSS AQEIMTANNA KLISEKGIPL IVIQDEKIKV DTKASLQSIA SALFNEAKKQ SGAISSIEEI KSKTLKKLEK LQNKTESEKD TILVSEIRKK NWYERYRWFY TSDGFLVIGG RDAASNSAVV RKHLDKNDKI FHGDIFGSPF FIIKDAQNVP DTSMNEVSHA TVCFSRAWRE GMYGVSAYWV NPDQVKKSAP SGEFLPKGSF TIEGQRNFIK SGNLKLAVGI IPQEDGYALT CGPPETIKKN SICYAIIEPQ GIEMVDAAKK IRLEFSKIHE EITKKISIDE FVRVMPAGKS QVKDVNRGEA DIQNFIDTEE DD // ID A9A2K0_NITMS Unreviewed; 304 AA. AC A9A2K0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 48. DE SubName: Full=Ectoine hydroxylase {ECO:0000313|EMBL:ABX13239.1}; GN OrderedLocusNames=Nmar_1343 {ECO:0000313|EMBL:ABX13239.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13239.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13239.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13239.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13239.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2K0; -. DR STRING; 436308.Nmar_1343; -. DR EnsemblBacteria; ABX13239; ABX13239; Nmar_1343. DR KEGG; nmr:Nmar_1343; -. DR eggNOG; arCOG09157; Archaea. DR eggNOG; COG5285; LUCA. DR HOGENOM; HOG000078048; -. DR KO; K10674; -. DR OMA; GSEVYIH; -. DR BioCyc; NMAR436308:GI3J-1377-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016706; F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; IEA:InterPro. DR InterPro; IPR012774; EctD. DR InterPro; IPR008775; Phytyl_CoA_dOase. DR Pfam; PF05721; PhyH; 1. DR TIGRFAMs; TIGR02408; ectoine_ThpD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 304 AA; 34667 MW; C55BCFCBBAF119FA CRC64; MYQNNTEMDF YPTRMNSESK IIPRTDPVVY PSSLTSLTRK QEDFFEKNGY LVFENLFSID EVTALLDELK ALSKDDSKKE LPQFILEETK KDVRSIFEIH KLSEIFSRLC KDSRLVDVAQ QLLGSKVYVH QSRVNLKPGF DGKEFYWHSD FETWHSEDGM PNMRAVSCSV SLTKNYEFNG PLMVIPGSHK EFVSCSGTTP DKHYKQSLKR QEIGTPDKKI LEDMVEKGGI VSAKGDAGSA IFFDCNIMHG SNGNISPYPR SNAFIVFNSI HNKLITPFCG LEPRPNYIGS REFSVLDPIE NFLN // ID A9A199_NITMS Unreviewed; 227 AA. AC A9A199; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Major intrinsic protein {ECO:0000313|EMBL:ABX12385.1}; GN OrderedLocusNames=Nmar_0489 {ECO:0000313|EMBL:ABX12385.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12385.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12385.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12385.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12385.1; -; Genomic_DNA. DR ProteinModelPortal; A9A199; -. DR STRING; 436308.Nmar_0489; -. DR EnsemblBacteria; ABX12385; ABX12385; Nmar_0489. DR KEGG; nmr:Nmar_0489; -. DR eggNOG; arCOG04431; Archaea. DR eggNOG; COG0580; LUCA. DR HOGENOM; HOG000288286; -. DR KO; K06188; -. DR OMA; KSHALEN; -. DR BioCyc; NMAR436308:GI3J-509-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005215; F:transporter activity; IEA:InterPro. DR Gene3D; 1.20.1080.10; -; 1. DR InterPro; IPR023271; Aquaporin-like. DR InterPro; IPR000425; MIP. DR InterPro; IPR022357; MIP_CS. DR PANTHER; PTHR19139; PTHR19139; 1. DR Pfam; PF00230; MIP; 1. DR PRINTS; PR00783; MINTRINSICP. DR SUPFAM; SSF81338; SSF81338; 1. DR PROSITE; PS00221; MIP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 40 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 104 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 124 147 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 154 176 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 196 214 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 227 AA; 24454 MW; CC05374612BD09B2 CRC64; MAYSNLQIFT VELIGTFILV IFATGSIVYD AEFFDGQLGI PFAAIAPFIA LLIGVYSFGK ISLAHFNPAV TIGYYITGHI TKIQILYYFA AEIIGALLGS LFVMKVIGEK ANLGANAPNY DFSLGLIFPV EVLASAMLMG VIFYVVYTKG LKGFSGVAIG GIVGLDILFL AFISGASMNP ARALAPALLS GTFSDLWLYW TAPFIGTMIV AFLFRGKFQA QRASNYE // ID A9A109_NITMS Unreviewed; 57 AA. AC A9A109; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11970.1}; GN OrderedLocusNames=Nmar_0070 {ECO:0000313|EMBL:ABX11970.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11970.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11970.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11970.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11970.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0070; -. DR EnsemblBacteria; ABX11970; ABX11970; Nmar_0070. DR KEGG; nmr:Nmar_0070; -. DR eggNOG; arCOG08820; Archaea. DR eggNOG; ENOG4110ZNG; LUCA. DR HOGENOM; HOG000110709; -. DR OMA; DARCPEC; -. DR BioCyc; NMAR436308:GI3J-71-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 57 AA; 6527 MW; 0FE73E5F23CDAB97 CRC64; MDARCPECEK VAILDDDVTN VKCPHCNFEA DYDTYLEIMK DQAINMSSEY IPDRPGL // ID A9A1K8_NITMS Unreviewed; 393 AA. AC A9A1K8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 59. DE RecName: Full=Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; DE Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107}; DE EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107}; GN Name=argD {ECO:0000256|HAMAP-Rule:MF_01107}; GN OrderedLocusNames=Nmar_1291 {ECO:0000313|EMBL:ABX13187.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13187.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13187.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13187.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: N(2)-acetyl-L-ornithine + 2-oxoglutarate = N- CC acetyl-L-glutamate 5-semialdehyde + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_01107}. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01107}; CC Note=Binds 1 pyridoxal phosphate per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01107}; CC -!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; N(2)- CC acetyl-L-ornithine from L-glutamate: step 4/4. {ECO:0000256|HAMAP- CC Rule:MF_01107}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01107}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01107}. CC -!- MISCELLANEOUS: May also have succinyldiaminopimelate CC aminotransferase activity, thus carrying out the corresponding CC step in lysine biosynthesis. {ECO:0000256|HAMAP-Rule:MF_01107}. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. ArgD subfamily. {ECO:0000256|HAMAP- CC Rule:MF_01107}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13187.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K8; -. DR STRING; 436308.Nmar_1291; -. DR EnsemblBacteria; ABX13187; ABX13187; Nmar_1291. DR KEGG; nmr:Nmar_1291; -. DR eggNOG; arCOG00914; Archaea. DR eggNOG; COG4992; LUCA. DR HOGENOM; HOG000020206; -. DR KO; K05830; -. DR OMA; SAWDICI; -. DR BioCyc; NMAR436308:GI3J-1324-MONOMER; -. DR UniPathway; UPA00068; UER00109. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003992; F:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR HAMAP; MF_01107; ArgD_aminotrans_3; 1. DR InterPro; IPR004636; AcOrn/SuccOrn_fam. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR00707; argD; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_01107}; KW Aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107, KW ECO:0000313|EMBL:ABX13187.1}; KW Arginine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01107}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01107}; KW Pyridoxal phosphate {ECO:0000256|HAMAP-Rule:MF_01107, KW ECO:0000256|RuleBase:RU003560}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01107, KW ECO:0000313|EMBL:ABX13187.1}. FT REGION 212 215 Pyridoxal phosphate binding. FT {ECO:0000256|HAMAP-Rule:MF_01107}. FT BINDING 269 269 N2-acetyl-L-ornithine. FT {ECO:0000256|HAMAP-Rule:MF_01107}. FT BINDING 270 270 Pyridoxal phosphate. {ECO:0000256|HAMAP- FT Rule:MF_01107}. FT MOD_RES 241 241 N6-(pyridoxal phosphate)lysine. FT {ECO:0000256|HAMAP-Rule:MF_01107}. SQ SEQUENCE 393 AA; 43027 MW; 748947A53AF6395F CRC64; MSEDQHMGNL YQRFPVTVEK GKGAHVWDVD GKEYIDCMGG YGVALVGHQN QRVNNAIKEQ VDKIITVHSS LYNKTREEFL KTLIGLAPKG LTQVHLNNSG AEAIEAAIKF ARKFTGKKGM VAMKGSYHGK SFGALSITFN PKYKKAFAPL VDKVSFASYG DIESLKEAID DDTAFVILEP IQGESGIIVA PDGFLQDVRK LCDEKGILLI FDEIQAGLGR TGRLWACDHW NTAPDILCLA KGIAGGVPMG ATLVRPDILA SMSKGEHSST FGGNPISCAA GVAALKSITE DGLIENSEKM GKIFREGLEK LKENHTMIRE IRGKGLMIGV EMKFEVRDIL MGLIREGVLM LYSGRNILRI LPPLVITEED VTKVLHALDV ILTEEEKKRN VQG // ID A9A164_NITMS Unreviewed; 93 AA. AC A9A164; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12350.1}; GN OrderedLocusNames=Nmar_0454 {ECO:0000313|EMBL:ABX12350.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12350.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12350.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12350.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12350.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0454; -. DR EnsemblBacteria; ABX12350; ABX12350; Nmar_0454. DR KEGG; nmr:Nmar_0454; -. DR BioCyc; NMAR436308:GI3J-473-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 23 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 93 AA; 10020 MW; DA532EC01D9D4FC2 CRC64; MNSKGIVVIS VIVISLVGIA YMSSTQQFDE SMTPSIESNL SVDHDTSLSL TYPDSPVISH SNSVDESDVV VTVDEDGKKQ YSIEVGDTPI IQE // ID A9A1Y3_NITMS Unreviewed; 408 AA. AC A9A1Y3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE RecName: Full=Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; DE EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; GN Name=pgk {ECO:0000256|HAMAP-Rule:MF_00145}; GN OrderedLocusNames=Nmar_0500 {ECO:0000313|EMBL:ABX12396.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12396.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12396.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12396.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + 3-phospho-D-glycerate = ADP + 3-phospho- CC D-glyceroyl phosphate. {ECO:0000256|HAMAP-Rule:MF_00145, CC ECO:0000256|RuleBase:RU000532}. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; pyruvate from D- CC glyceraldehyde 3-phosphate: step 2/5. {ECO:0000256|HAMAP- CC Rule:MF_00145}. CC -!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_00145}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00145}. CC -!- SIMILARITY: Belongs to the phosphoglycerate kinase family. CC {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12396.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Y3; -. DR STRING; 436308.Nmar_0500; -. DR EnsemblBacteria; ABX12396; ABX12396; Nmar_0500. DR KEGG; nmr:Nmar_0500; -. DR eggNOG; arCOG00496; Archaea. DR eggNOG; COG0126; LUCA. DR HOGENOM; HOG000227108; -. DR KO; K00927; -. DR OMA; AGHPVGK; -. DR BioCyc; NMAR436308:GI3J-520-MONOMER; -. DR UniPathway; UPA00109; UER00185. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004618; F:phosphoglycerate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1260; -; 1. DR Gene3D; 3.40.50.1270; -; 1. DR HAMAP; MF_00145; Phosphoglyc_kinase; 1. DR InterPro; IPR001576; Phosphoglycerate_kinase. DR InterPro; IPR015901; Phosphoglycerate_kinase_C. DR InterPro; IPR015911; Phosphoglycerate_kinase_CS. DR InterPro; IPR015824; Phosphoglycerate_kinase_N. DR PANTHER; PTHR11406; PTHR11406; 1. DR Pfam; PF00162; PGK; 1. DR PIRSF; PIRSF000724; Pgk; 1. DR PRINTS; PR00477; PHGLYCKINASE. DR SUPFAM; SSF53748; SSF53748; 1. DR PROSITE; PS00111; PGLYCERATE_KINASE; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00145, KW ECO:0000256|PIRSR:PIRSR000724-2}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00145}; KW Glycolysis {ECO:0000256|HAMAP-Rule:MF_00145}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00145, KW ECO:0000256|RuleBase:RU000532, ECO:0000313|EMBL:ABX12396.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00145, KW ECO:0000256|PIRSR:PIRSR000724-2}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00145, KW ECO:0000256|RuleBase:RU000532, ECO:0000313|EMBL:ABX12396.1}. FT NP_BIND 357 360 ATP. {ECO:0000256|HAMAP-Rule:MF_00145, FT ECO:0000256|PIRSR:PIRSR000724-2}. FT REGION 27 29 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00145, FT ECO:0000256|PIRSR:PIRSR000724-1}. FT REGION 65 68 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00145, FT ECO:0000256|PIRSR:PIRSR000724-1}. FT BINDING 44 44 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00145, FT ECO:0000256|PIRSR:PIRSR000724-1}. FT BINDING 122 122 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00145, FT ECO:0000256|PIRSR:PIRSR000724-1}. FT BINDING 162 162 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00145, FT ECO:0000256|PIRSR:PIRSR000724-1}. FT BINDING 331 331 ATP. {ECO:0000256|HAMAP-Rule:MF_00145, FT ECO:0000256|PIRSR:PIRSR000724-2}. SQ SEQUENCE 408 AA; 44709 MW; F1E8BEBB649F809F CRC64; MHNRKGVKVL TLDDFDLKGK TVFLRVDMNC PIDPETMEIS GTKRIEEAIE TLQSLKDAKV VVASHQGRVG NNDYTGMDKH AKVLEKLMNR EIKYVEDVIG EAAQNAIKNL EDGDILLLDN LRLCAEENYE FTPENASKTI MVTRLAKLFD LCVLDSFPSA HRSHPSIVGF PQVLPACAGR IVEREVRNLD EIMTVAKAPH VIVLGGSKVP DRLEAIKLLI QNGRADHVLL TGLIGNVFMR AQARVKSSLG IKREEEVVAK AHTLIGEHPD VFATPVDIAI DKDGERVEMD VREMGKGDKI FDLGPKTVEY YSKLIAGAGT VFISGPAGFF EKENFSYGTK SLLTAVANSM ATTIVSGGHL TTALKQQGLA EKINHISTAG GALVLYLTGE KLPMIKALED ARTRHQSK // ID A9A4E3_NITMS Unreviewed; 134 AA. AC A9A4E3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12632.1}; GN OrderedLocusNames=Nmar_0736 {ECO:0000313|EMBL:ABX12632.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12632.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12632.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12632.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12632.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0736; -. DR EnsemblBacteria; ABX12632; ABX12632; Nmar_0736. DR KEGG; nmr:Nmar_0736; -. DR eggNOG; arCOG08802; Archaea. DR eggNOG; ENOG41110B2; LUCA. DR OMA; TNAVEGP; -. DR BioCyc; NMAR436308:GI3J-762-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 134 AA; 14961 MW; 0C7EF2E6348ED3E2 CRC64; MTVDKNLLKS LIDFSESDSL EFTLYLKNNS YPLTHVQVSH SSVPVNEPTT RGGVYFSDKF AYKMKGTVND LSIVPLLTKK MLGPNTEFGE LKITTSITLE NSIKHLEIHT NLTNSVQTPN SIELSMIIVK LESV // ID A9A4P8_NITMS Unreviewed; 392 AA. AC A9A4P8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Putative metal cation transporter {ECO:0000313|EMBL:ABX13026.1}; GN OrderedLocusNames=Nmar_1130 {ECO:0000313|EMBL:ABX13026.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13026.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13026.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13026.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13026.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1130; -. DR EnsemblBacteria; ABX13026; ABX13026; Nmar_1130. DR KEGG; nmr:Nmar_1130; -. DR eggNOG; ENOG4102TXX; Archaea. DR eggNOG; ENOG411110F; LUCA. DR HOGENOM; HOG000096214; -. DR OMA; HNITEGI; -. DR BioCyc; NMAR436308:GI3J-1162-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 164 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 176 192 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 212 231 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 243 262 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 268 291 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 312 334 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 340 361 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 373 391 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 392 AA; 41950 MW; 9BBA7297ED04751D CRC64; MELSNKSSKV KIVASGIIPF AFLVIMIAYI FGPGADLLDL GIPLPEITME RVDFVESEIQ ITVRNTGPIP VEVAMADVND RIQPAAVEPD RYLNRYETAL VRIPFEWNEA EPYIVGITIE DGTRFEKEIE AAAPALEPTI ELAAFFAIIG TYVGIIPVMI GLLWLPFIKK ISKQKYHFFL ALTAGLLLFL GIDSIEEAVE VSQENLAGSF NGMLLIATVI TFSFLGLYYT GEKLVQRASS SKLAKPVAIA LMISIGIGLH NFGEGLAIGA AVGLGSIAFS TFLIVGFALH NTTEGIAIAA PMSRGKLMIG KLAAMGMIAG APAIFGAWIG GFVYSPFTSV VFLSVGAGAI FQVIITVLKW IREEGDKNLS SASVASGFAV GMLVMYLTSI LV // ID A9A3G3_NITMS Unreviewed; 403 AA. AC A9A3G3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12895.1}; GN OrderedLocusNames=Nmar_0999 {ECO:0000313|EMBL:ABX12895.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12895.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12895.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12895.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12895.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0999; -. DR EnsemblBacteria; ABX12895; ABX12895; Nmar_0999. DR KEGG; nmr:Nmar_0999; -. DR eggNOG; arCOG10350; Archaea. DR eggNOG; ENOG41122U8; LUCA. DR BioCyc; NMAR436308:GI3J-1027-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 331 365 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 403 AA; 44059 MW; FED7061F2DA9D285 CRC64; MQMKLDFTPD QVVCSENLVK LIKKTTGDAS CVKPKTAERL SELGWSNPLS EKKIEEISAK KAKKGEPAGT IEKIATLKQS TKVIKGSTAT GVTGYAFVFD ACADSKTVRN PEIFVTSDSE TKSVKLGSML KANSCYTSSV IIKAADPNSI SATLLNKGGI SEKISSLETQ ITDLKERITA AKQKIPRDGE PSPENLSNIS TLKKELKSLQ DQLRRYLMVL YVPPNTKATE LDLPKSITGQ PLEGMSTNLI SVTEAVAKPD SSNPDLKRYD VVFEACTGKD TVRIPVIDIV SDSASTTVKL IDRIVPNSCQ VGIAKINALD SESIEPKIST HSKASSEVEK LEKKIDKLQT DLSEQRKSLN QLTSKKLDST GEEQATEIVQ NIEKLRLDLL ENRTKLYKLL LLV // ID A9A4L3_NITMS Unreviewed; 162 AA. AC A9A4L3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12991.1}; GN OrderedLocusNames=Nmar_1095 {ECO:0000313|EMBL:ABX12991.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12991.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12991.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12991.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12991.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1095; -. DR EnsemblBacteria; ABX12991; ABX12991; Nmar_1095. DR KEGG; nmr:Nmar_1095; -. DR OMA; VPLGCCG; -. DR BioCyc; NMAR436308:GI3J-1126-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 59 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 106 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 126 147 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 162 AA; 17142 MW; 7EDC8E946D51A425 CRC64; MKPIQKATIV GIITVTLYLT VVVATTPALE PYAAISAAFQ LNSIVIIGMG VGIGLQVFLS EKSKLLGCKL DVKRKAFGGN SGSTAATSFF SFFSLVPLGC CGWWLYVLSL LPSVVGTGVS AVLIEYSQVL AYVGLAIIFG FAGFTALKLK KEQQLQNSLE LN // ID A9A4V7_NITMS Unreviewed; 264 AA. AC A9A4V7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=ATPase associated with various cellular activities AAA_5 {ECO:0000313|EMBL:ABX13411.1}; GN OrderedLocusNames=Nmar_1515 {ECO:0000313|EMBL:ABX13411.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13411.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13411.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13411.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13411.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4V7; -. DR STRING; 436308.Nmar_1515; -. DR EnsemblBacteria; ABX13411; ABX13411; Nmar_1515. DR KEGG; nmr:Nmar_1515; -. DR eggNOG; arCOG00441; Archaea. DR eggNOG; COG0714; LUCA. DR HOGENOM; HOG000105187; -. DR KO; K04748; -. DR OMA; LAQGDEC; -. DR BioCyc; NMAR436308:GI3J-1557-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR011704; ATPase_dyneun-rel_AAA. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF07728; AAA_5; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 170 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 264 AA; 29575 MW; F54FE2279366438B CRC64; MEEVQYLDWN NSIQTLNKAY ETGLFVLIIG PKGTGKTSLV RDFAKGKGIN LESINFSLRT RESHLVGTKT LTDGTVSFDE GLLIKSMREG SMLYLDEINS AEADVLLRLD EALDDRRQIA LKESTGEVVK AKENWFVVAT INPLTHSGTK ELPPQLLSRF PVRIRLEYPP EEVELEIVKK HVSGEHDSEI VQAIKLANTL RQAAAVEELF YSPSMRETIA FAKLLDKGMA AKEAANFVFG NVYTQWGDIE YQKVSDIITS MFGN // ID A9A3M2_NITMS Unreviewed; 574 AA. AC A9A3M2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX13284.1}; GN OrderedLocusNames=Nmar_1388 {ECO:0000313|EMBL:ABX13284.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13284.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13284.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13284.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13284.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M2; -. DR STRING; 436308.Nmar_1388; -. DR EnsemblBacteria; ABX13284; ABX13284; Nmar_1388. DR KEGG; nmr:Nmar_1388; -. DR eggNOG; arCOG01357; Archaea. DR eggNOG; COG1032; LUCA. DR HOGENOM; HOG000222870; -. DR OMA; YEMDPLG; -. DR BioCyc; NMAR436308:GI3J-1423-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR023970; MeThioTfrase/rSAM. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR PANTHER; PTHR11918; PTHR11918; 2. DR Pfam; PF04055; Radical_SAM; 1. DR SMART; SM00729; Elp3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 268 510 Elp3. {ECO:0000259|SMART:SM00729}. SQ SEQUENCE 574 AA; 65036 MW; 1CD5731FA3EE441C CRC64; MGTPKIVLTA DRTLMSPYRG LSLATFFGCA PAIDPNRDPK SFWYKILGKQ VTPKLLFDFI CNYIPHTNGV ANYAPYGLRK LEAGLLRDGF SRQDVVVAHP DHIEKFIGPE TLVVGTYEMD PLGMGPVTMT FTYGRKQTSY DEYYNTELHH RIKAAKAKTG SKAKVISGAS GTWQYNYDPE KIEEFGIYAI LEGELGGIAP EIDGHAGRFF NYLINGDFEN MDPFRKRSDF KVNIKEFERN GKKLHGRFVN FWDRPDLEEI PDIVEPSMHG MIEVMRGCGR GCKFCDVTLR SLRYYSPEKV KKEIEVNIKK GGSKSAWVHS DDIFVYGMDP RTAKGMEPNR EALEELFTAI MSTGVEHTNP THGTLAGAIA DEKLIPNLSK IMKAGPDNMI GVQAGFETGS LRLIGKYADR KLAPYSPDEW HWVVKEGVKT LNQDYWIPAF TLIMGLDNDE QPEDSWETIR LISELEREQP ESMFTTTALT FVPIGLLEKS DFFNIGNEMT PAQLGVLYKT WQHNFKYGIQ KFMTRTGSKG PQRYFFNAIA RSLGGVPLGA MERYARKKGR EHEHVIETVK AKYR // ID A9A1R8_NITMS Unreviewed; 605 AA. AC A9A1R8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12039.1}; GN OrderedLocusNames=Nmar_0139 {ECO:0000313|EMBL:ABX12039.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12039.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12039.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12039.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12039.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0139; -. DR EnsemblBacteria; ABX12039; ABX12039; Nmar_0139. DR KEGG; nmr:Nmar_0139; -. DR eggNOG; arCOG01403; Archaea. DR eggNOG; COG0438; LUCA. DR OMA; AITEIDY; -. DR BioCyc; NMAR436308:GI3J-142-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR003331; UDP_GlcNAc_Epimerase_2_dom. DR Pfam; PF02350; Epimerase_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 400 541 Epimerase_2. {ECO:0000259|Pfam:PF02350}. SQ SEQUENCE 605 AA; 71053 MW; 6C89C13FEF59D2FF CRC64; MSINQIIIID NSIEISKIKN LELSNSKIIT VDYEIHKKLN DEKIEHFISD DFLDQKLLIK IQKESYKIAK WYNTPEISEK ITYNSINLGG LFYIEFHAFM IPFLKKLFEI YYICKEYKNY KIFTSKNLIS IIKKHTSDFE CINPESLENS DFLYDSLPIT KKIWNQNLKI NLSRKNIKQI KNFSENFMKK ILDVDKRISK NNKSVLFVEF DLNKFQNLFL HPQKKFNFIL YNRRRPIFIN KKSINILKDS KCSYISENNF KKYRKNDFEV SQIINLIENS GELKKLFEID SINFWDELKP KLINLSKKRI PEAITEIDYA KQIFEKYQFS SMVILSESGF NEQIVIELAK KQGIPIILLQ HGMGPESRET LNLKKFDGVW PIKSDYICVW GNIVRKISSE NGINENKIIE VGNPVFDNLS KCKNKEYVLL TTSWLTNNQI FDYSAKKILN YEKTIEEIAK IIKKLNLELV VKLHPAPSER DVGKSISKTM PKARIVKDGN IHELINNCRL MIVTDFSTTI LEGTLFEKPV ISVRIKEEYY GTPIVFEKNG CHVSTINELD ESIEKILKDK DFEKSLLAKQ KKFLKQYVSH INNSTDKFIE FISKL // ID A9A3I2_NITMS Unreviewed; 120 AA. AC A9A3I2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12914.1}; GN OrderedLocusNames=Nmar_1018 {ECO:0000313|EMBL:ABX12914.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12914.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12914.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12914.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12914.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12914; ABX12914; Nmar_1018. DR KEGG; nmr:Nmar_1018; -. DR eggNOG; arCOG10569; Archaea. DR eggNOG; ENOG41111RB; LUCA. DR BioCyc; NMAR436308:GI3J-1049-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 120 AA; 14062 MW; DB0F6233D1C3B1E2 CRC64; MSEVSFLAEK VFVHRWPHDT PLWDDSVKQK LDETVSKNAE PKKITVSGKS IIIQDFEFSH LKKIGISVPF FKDECRMIFE SQFGELYTHV HITVKSSEYM DIFAKLKSWK SEFFPNDSNK // ID A9A619_NITMS Unreviewed; 110 AA. AC A9A619; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13497.1}; GN OrderedLocusNames=Nmar_1601 {ECO:0000313|EMBL:ABX13497.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13497.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13497.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13497.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13497.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1601; -. DR EnsemblBacteria; ABX13497; ABX13497; Nmar_1601. DR KEGG; nmr:Nmar_1601; -. DR eggNOG; arCOG03363; Archaea. DR eggNOG; COG2811; LUCA. DR HOGENOM; HOG000109885; -. DR KO; K02107; -. DR OMA; KTREMAT; -. DR BioCyc; NMAR436308:GI3J-1645-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 110 AA; 11912 MW; F45BD817E0A47E92 CRC64; MSMAESKVTG IIKSLNVLED DIDSLNSKVG DMKKQLSVKA QNEIDALMEK TREMATKEAE VMINASKEKA TAESAKIAQE GEAKLSEIQA KIDANFDEAV THVVSTVLKA // ID A9A5F9_NITMS Unreviewed; 263 AA. AC A9A5F9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE RecName: Full=Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; GN Name=tatC {ECO:0000256|HAMAP-Rule:MF_00902}; GN OrderedLocusNames=Nmar_0774 {ECO:0000313|EMBL:ABX12670.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12670.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12670.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12670.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of the twin-arginine translocation (Tat) system CC that transports large folded proteins containing a characteristic CC twin-arginine motif in their signal peptide across membranes. CC {ECO:0000256|HAMAP-Rule:MF_00902}. CC -!- SUBUNIT: Forms a complex with TatA. {ECO:0000256|HAMAP- CC Rule:MF_00902}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_00902}; Multi-pass membrane protein {ECO:0000256|HAMAP- CC Rule:MF_00902}. CC -!- SIMILARITY: Belongs to the TatC family. {ECO:0000256|HAMAP- CC Rule:MF_00902}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12670.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0774; -. DR EnsemblBacteria; ABX12670; ABX12670; Nmar_0774. DR KEGG; nmr:Nmar_0774; -. DR eggNOG; arCOG01919; Archaea. DR eggNOG; COG0805; LUCA. DR HOGENOM; HOG000107444; -. DR KO; K03118; -. DR OMA; WHLIRST; -. DR BioCyc; NMAR436308:GI3J-800-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0033281; C:TAT protein transport complex; IEA:UniProtKB-HAMAP. DR GO; GO:0008320; F:protein transmembrane transporter activity; IEA:UniProtKB-HAMAP. DR GO; GO:0043953; P:protein transport by the Tat complex; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00902; TatC; 1. DR InterPro; IPR002033; TatC. DR PANTHER; PTHR30371:SF0; PTHR30371:SF0; 1. DR Pfam; PF00902; TatC; 1. DR PRINTS; PR01840; TATCFAMILY. DR TIGRFAMs; TIGR00945; tatC; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00902}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_00902}; KW Protein transport {ECO:0000256|HAMAP-Rule:MF_00902}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Translocation {ECO:0000256|HAMAP-Rule:MF_00902}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_00902}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00902}; KW Transport {ECO:0000256|HAMAP-Rule:MF_00902}. FT TRANSMEM 21 41 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 86 106 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 128 148 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 164 184 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 185 205 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 212 232 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00902}. FT TRANSMEM 233 253 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00902}. SQ SEQUENCE 263 AA; 29343 MW; E0B104610FDFBD59 CRC64; MSELDGINQH FEELRKRLLR IVLVIGVITA FILTFHAEPI QVGQTTLYYP TPEPLNNIAA QITNHMKVNL VPEDVQLIQT APGQAFFAQV YIAALVGIVV GMPVIIKELV GFIKPALKEN EINVSRSITI PALGLFITGC AFSYNLVIPY ILEFLYRYGE SAGLVTFLNV IEFVTFVLQF LLAFGFSFQL PLVMYAISAS GMVDADFWRK NIRYAIVIIV IFGAIITPDG SGVTMWFIAG PMIALYVTGM MLIERKERKK LNT // ID A9A2W7_NITMS Unreviewed; 377 AA. AC A9A2W7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 45. DE SubName: Full=Glutamine--scyllo-inositol transaminase {ECO:0000313|EMBL:ABX13644.1}; DE EC=2.6.1.50 {ECO:0000313|EMBL:ABX13644.1}; GN OrderedLocusNames=Nmar_1748 {ECO:0000313|EMBL:ABX13644.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13644.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13644.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13644.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the DegT/DnrJ/EryC1 family. CC {ECO:0000256|RuleBase:RU004508}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13644.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2W7; -. DR STRING; 436308.Nmar_1748; -. DR EnsemblBacteria; ABX13644; ABX13644; Nmar_1748. DR KEGG; nmr:Nmar_1748; -. DR eggNOG; arCOG00118; Archaea. DR eggNOG; COG0399; LUCA. DR HOGENOM; HOG000230163; -. DR OMA; HYRPNHL; -. DR BioCyc; NMAR436308:GI3J-1795-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0047310; F:glutamine-scyllo-inositol transaminase activity; IEA:UniProtKB-EC. DR GO; GO:0080100; F:L-glutamine:2-oxoglutarate aminotransferase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000653; DegT/StrS_aminotransferase. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF01041; DegT_DnrJ_EryC1; 1. DR PIRSF; PIRSF000390; PLP_StrS; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX13644.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU004508}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13644.1}. SQ SEQUENCE 377 AA; 41496 MW; 6A720CDDDEC3E18A CRC64; MRSNCLYTLV LRTKFVKIPI NTPILGKEEL SAVVSVVKSG GLTSASKDGG KNVQEFEKSI RSFVKTKYAV SVNTGTAALQ AALYALDIKK GDEVIVPSFT FVASANAIAS TGAKPVFADI LKENFTIDPE SITKKITRKT KAIMPVHLYG HISSLDRIKE IAKKHNLSII EDAAQSLGST LKGKQTGTFF ELGCYSLYPG KVITSGEGGV IVTNSKKLYE KLQMIRNHGM VKGYDSKIFG LNLRLPEINA AIAKIQIKKL PKFIQSRRCN AKLLSDLLSD TKIKIPIEGK NEKFNWGLYT ITTQNRDSIL KKLNSKGIGA AVYYPIPVHK IPIYKIKSKL TNTDWASKHV LSLPVHPNVS AKNVEYIAKT VRDLVNE // ID A9A3P5_NITMS Unreviewed; 98 AA. AC A9A3P5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13307.1}; GN OrderedLocusNames=Nmar_1411 {ECO:0000313|EMBL:ABX13307.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13307.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13307.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13307.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13307.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3P5; -. DR STRING; 436308.Nmar_1411; -. DR EnsemblBacteria; ABX13307; ABX13307; Nmar_1411. DR KEGG; nmr:Nmar_1411; -. DR eggNOG; arCOG04051; Archaea. DR eggNOG; COG2412; LUCA. DR HOGENOM; HOG000226683; -. DR KO; K09148; -. DR OMA; HISESYY; -. DR BioCyc; NMAR436308:GI3J-1446-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007355; DUF424. DR Pfam; PF04242; DUF424; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 98 AA; 10852 MW; 72723A331A4D3C90 CRC64; MPFAVRQTDY QKNPMLNICD AELLGKTIVE GELNMHISES YYGERFVEKE EAETLLKNSA IINLVGDETI SLSLGLGIGS ENAVKKISGV PFLIVFKM // ID A9A5L6_NITMS Unreviewed; 350 AA. AC A9A5L6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE SubName: Full=Glyceraldehyde-3-phosphate dehydrogenase (NAD(P)(+)) (Phosphorylating) {ECO:0000313|EMBL:ABX12727.1}; DE EC=1.2.1.59 {ECO:0000313|EMBL:ABX12727.1}; GN OrderedLocusNames=Nmar_0831 {ECO:0000313|EMBL:ABX12727.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12727.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12727.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12727.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12727.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5L6; -. DR STRING; 436308.Nmar_0831; -. DR EnsemblBacteria; ABX12727; ABX12727; Nmar_0831. DR KEGG; nmr:Nmar_0831; -. DR eggNOG; arCOG00493; Archaea. DR eggNOG; COG0057; LUCA. DR HOGENOM; HOG000107668; -. DR KO; K00150; -. DR BioCyc; NMAR436308:GI3J-858-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043891; F:glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR020831; GlycerAld/Erythrose_P_DH. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PIRSF; PIRSF000149; GAP_DH; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12727.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT ACT_SITE 142 142 Nucleophile. FT {ECO:0000256|PIRSR:PIRSR000149-1}. SQ SEQUENCE 350 AA; 39504 MW; F3401455DC2CE018 CRC64; MKQVFVNGYG SIGSRITAFL KDDPEILVVG VGKYSPDDDV NLAISRGLNV YVPEKKLDDF KDFKISGSIE SALDNSDLVI DAAPGGHGYK NKKNLYEPRN LPAIYQGGES TMGDDAVSDL LFNSRANYDL AIGKHHVMQG SCNVTGMGRI LEPLRDKFGD NLIRFDVTLV RRWADIEQTD KKLSDTIEMT EKPHHGDDVK LYFGKDAPLY VRAIKVPTRQ MHLHIMDIRF KDTAPKPSEI HELFTNEFGV ATLWTAKGTK DVRDYAQNMG FNFTDTNMIH IHANMTTSIG DTVQMMYSDD QTGIVIPENH MLMQAMLFEK SYADAFAHTE SIFHMVEKKQ KLQEHFAKKD // ID A9A5V6_NITMS Unreviewed; 133 AA. AC A9A5V6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13111.1}; GN OrderedLocusNames=Nmar_1215 {ECO:0000313|EMBL:ABX13111.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13111.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13111.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13111.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13111.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1215; -. DR EnsemblBacteria; ABX13111; ABX13111; Nmar_1215. DR KEGG; nmr:Nmar_1215; -. DR BioCyc; NMAR436308:GI3J-1248-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 133 AA; 15013 MW; 14BA02057CB74ECE CRC64; MNDRLFYSSL EYVDVIYSEI ISARKNNGDA FHRISKEVIS ESFSKIESHD TVSICGSLAG VAIVSAFKKS RGRYKSGSFA KSFNEINSHA GRTTFADLRI IQKFLDSAKF DTVLKLLRRN RKSGFKSCLN MLK // ID A9A156_NITMS Unreviewed; 335 AA. AC A9A156; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Polysaccharide biosynthesis protein CapD {ECO:0000313|EMBL:ABX12017.1}; GN OrderedLocusNames=Nmar_0117 {ECO:0000313|EMBL:ABX12017.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12017.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12017.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12017.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12017.1; -; Genomic_DNA. DR ProteinModelPortal; A9A156; -. DR STRING; 436308.Nmar_0117; -. DR EnsemblBacteria; ABX12017; ABX12017; Nmar_0117. DR KEGG; nmr:Nmar_0117; -. DR eggNOG; arCOG01375; Archaea. DR eggNOG; COG1086; LUCA. DR HOGENOM; HOG000257079; -. DR OMA; HTAAFKH; -. DR BioCyc; NMAR436308:GI3J-120-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR003869; Polysac_CapD-like. DR Pfam; PF02719; Polysacc_synt_2; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 291 Polysacc_synt_2. FT {ECO:0000259|Pfam:PF02719}. SQ SEQUENCE 335 AA; 37497 MW; F0A4C2D796BA93A6 CRC64; MQSILNKKNI LVTGGTGSIG QALVQRAISD GAKHIKVFSN DENALYEMEL DFSKHKNIEY IIGDIRDFDK INSIVKNCDI IFHAAALKHV DRCELYPLET MTVNIIGTNN VAKAAVNANV SKVISISTDK AVNPIGVMGA TKLLAEKLIA AEAYHSKSKT VFSSVRFGNV FHTRGSILPK IEKQIQNGGP LTLTDERMKR FFMTKEDAVD LILNAAYTAK GGETFILKMP MLNLKDLFEA MKIVIGPKHG YSSTKIKTKI TGIRPGEKLT EYLLTNFEME HCLETKNFFI IPKMFESLDP KKYPGSKKPK NTTKYFETVK PISQEQIVKL LKKIY // ID A9A5H3_NITMS Unreviewed; 132 AA. AC A9A5H3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Histone protein {ECO:0000313|EMBL:ABX12684.1}; GN OrderedLocusNames=Nmar_0788 {ECO:0000313|EMBL:ABX12684.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12684.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12684.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12684.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12684.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0788; -. DR EnsemblBacteria; ABX12684; ABX12684; Nmar_0788. DR KEGG; nmr:Nmar_0788; -. DR OMA; FRWHDGF; -. DR BioCyc; NMAR436308:GI3J-814-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 6 45 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 132 AA; 14471 MW; E3AC4C87B76B0225 CRC64; MAMSRAKRAE AAKKAARTRK RNAAKKAAEA AKAAASRKRK AARKRNAAKK AAPKRRTAAK KAAPKRRTAA KRKAAPKRKT AAKRKAAPKR KAAKRKAAPK RKTAAKRKAA PKRKAATKRR AAPKRKAAKR RR // ID A9A132_NITMS Unreviewed; 350 AA. AC A9A132; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11993.1}; GN OrderedLocusNames=Nmar_0093 {ECO:0000313|EMBL:ABX11993.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11993.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11993.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11993.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11993.1; -; Genomic_DNA. DR ProteinModelPortal; A9A132; -. DR STRING; 436308.Nmar_0093; -. DR EnsemblBacteria; ABX11993; ABX11993; Nmar_0093. DR KEGG; nmr:Nmar_0093; -. DR eggNOG; arCOG01395; Archaea. DR eggNOG; COG1817; LUCA. DR HOGENOM; HOG000110787; -. DR KO; K09726; -. DR OMA; MKVWIDI; -. DR BioCyc; NMAR436308:GI3J-95-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007152; DUF354. DR Pfam; PF04007; DUF354; 1. DR PIRSF; PIRSF005357; UCP005357; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 350 AA; 39733 MW; BFC967AEAFC7C623 CRC64; MKIWIDILTP KQLLFSEPII EKLGKKNRIL CTSRDYEEVS KLAKIRNFDL IFVGKHGGGS KNSKLKAGIE RMEKLTRKIE AFSPDLVISF CSPEAARISF GLGIKHIAFC DSPHAEAVMR LTLPLIQKLL IPYTIPKKEF SKFGINEKNI ISYKSIDAAV TIKRKTNQSV RLPFKNNHKK NILIRIEEEE AAYTKKSNKI IPIIENIISQ FSDENIVILG RYTEQIQKLQ KKVGKDAKVV KMSFDGKYLL KNTDVFIGSG GTMTAESALM GVPTISYNAV PNLIENFLVK KRLVKRETNP KRVSKQITKF FESKKQLNQQ KAKKILNQME DPIDKLIRVS GISLVLGKLE // ID A9A430_NITMS Unreviewed; 90 AA. AC A9A430; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 59. DE RecName: Full=DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; DE EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250}; GN Name=rpoN {ECO:0000256|HAMAP-Rule:MF_00250}; GN OrderedLocusNames=Nmar_0318 {ECO:0000313|EMBL:ABX12214.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12214.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12214.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12214.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription CC of DNA into RNA using the four ribonucleoside triphosphates as CC substrates. {ECO:0000256|HAMAP-Rule:MF_00250}. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). {ECO:0000256|HAMAP-Rule:MF_00250}. CC -!- SIMILARITY: Belongs to the archaeal RpoN/eukaryotic RPB10 RNA CC polymerase subunit family. {ECO:0000256|HAMAP-Rule:MF_00250}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12214.1; -; Genomic_DNA. DR ProteinModelPortal; A9A430; -. DR SMR; A9A430; 13-75. DR STRING; 436308.Nmar_0318; -. DR EnsemblBacteria; ABX12214; ABX12214; Nmar_0318. DR KEGG; nmr:Nmar_0318; -. DR eggNOG; arCOG04244; Archaea. DR eggNOG; COG1644; LUCA. DR HOGENOM; HOG000109502; -. DR KO; K03058; -. DR OMA; DDTMAFD; -. DR BioCyc; NMAR436308:GI3J-332-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.60; -; 1. DR HAMAP; MF_00250; RNApol_arch_N; 1. DR InterPro; IPR009057; Homeodomain-like. DR InterPro; IPR023580; RNA_pol_su_RPB10. DR InterPro; IPR020789; RNA_pol_suN_Zn-BS. DR InterPro; IPR000268; RNAP_N/Rpb10. DR Pfam; PF01194; RNA_pol_N; 1. DR ProDom; PD006539; RNA_pol_N/8_sub; 1. DR SUPFAM; SSF46924; SSF46924; 1. DR PROSITE; PS01112; RNA_POL_N_8KD; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00250}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00250}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00250}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00250}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00250}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00250}. FT METAL 19 19 Zinc. {ECO:0000256|HAMAP-Rule:MF_00250}. FT METAL 22 22 Zinc. {ECO:0000256|HAMAP-Rule:MF_00250}. FT METAL 56 56 Zinc. {ECO:0000256|HAMAP-Rule:MF_00250}. FT METAL 57 57 Zinc. {ECO:0000256|HAMAP-Rule:MF_00250}. SQ SEQUENCE 90 AA; 10718 MW; 33751C4D8F43B3B7 CRC64; MVFIILDYFF VRMLIPVRCF TCGNLIADKY DDYQNKIKAG EDPEKTLESL GIERYCCRRM LLTTVETIQQ VIPFYEAIQR RKQEVQSELE // ID A9A2H4_NITMS Unreviewed; 104 AA. AC A9A2H4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ABX13213.1}; GN OrderedLocusNames=Nmar_1317 {ECO:0000313|EMBL:ABX13213.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13213.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13213.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13213.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13213.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H4; -. DR STRING; 436308.Nmar_1317; -. DR EnsemblBacteria; ABX13213; ABX13213; Nmar_1317. DR KEGG; nmr:Nmar_1317; -. DR eggNOG; arCOG02305; Archaea. DR eggNOG; COG0347; LUCA. DR HOGENOM; HOG000017847; -. DR KO; K04751; -. DR OMA; DALDICT; -. DR BioCyc; NMAR436308:GI3J-1350-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030234; F:enzyme regulator activity; IEA:InterPro. DR GO; GO:0006808; P:regulation of nitrogen utilization; IEA:InterPro. DR Gene3D; 3.30.70.120; -; 1. DR InterPro; IPR002187; N-reg_PII. DR InterPro; IPR011322; N-reg_PII-like_a/b. DR InterPro; IPR015867; N-reg_PII/ATP_PRibTrfase_C. DR Pfam; PF00543; P-II; 1. DR PRINTS; PR00340; PIIGLNB. DR SMART; SM00938; P-II; 1. DR SUPFAM; SSF54913; SSF54913; 1. DR PROSITE; PS51343; PII_GLNB_DOM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 104 AA; 10899 MW; F24BD41DE3EF4930 CRC64; MKKVEAIVNE SAQNAVIDAM RKVGISGVTV SKVQGQGAQD PPLVGDFFSR VLIVCVVDDP KLDEILDAIA GAACTGTKGD GKVYVSDICD ALDICTKKRG TMDI // ID A9A5F2_NITMS Unreviewed; 130 AA. AC A9A5F2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12663.1}; GN OrderedLocusNames=Nmar_0767 {ECO:0000313|EMBL:ABX12663.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12663.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12663.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12663.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12663.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0767; -. DR EnsemblBacteria; ABX12663; ABX12663; Nmar_0767. DR KEGG; nmr:Nmar_0767; -. DR eggNOG; arCOG08800; Archaea. DR eggNOG; ENOG4111147; LUCA. DR OMA; IMIMADI; -. DR BioCyc; NMAR436308:GI3J-793-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 130 AA; 14593 MW; 03154253D59FFB99 CRC64; MKIAIFLVFL ITLGASFAFA DQVTTEIPPD AKTHYVDEQI MIMADITNNQ DVPQNFAYLT QVRNDQDVVI SLSWLTGSLS PRQSFSPAQS WTPDEPGVYY IQVFVWESID NPEALSPPLA MSVHVEQRST // ID A9A2F6_NITMS Unreviewed; 272 AA. AC A9A2F6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABX12867.1}; GN OrderedLocusNames=Nmar_0971 {ECO:0000313|EMBL:ABX12867.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12867.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12867.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12867.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12867.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2F6; -. DR STRING; 436308.Nmar_0971; -. DR EnsemblBacteria; ABX12867; ABX12867; Nmar_0971. DR KEGG; nmr:Nmar_0971; -. DR eggNOG; arCOG01568; Archaea. DR eggNOG; COG0668; LUCA. DR HOGENOM; HOG000110051; -. DR OMA; HENFVIE; -. DR BioCyc; NMAR436308:GI3J-999-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR011066; MscC_channel_C. DR InterPro; IPR006685; MscS_channel. DR InterPro; IPR011014; MscS_channel_TM-2. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. DR SUPFAM; SSF82689; SSF82689; 1. DR SUPFAM; SSF82861; SSF82861; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 61 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 86 115 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 272 AA; 29936 MW; 82F0592D8FF46E6E CRC64; MEFFDSLNQI EITETLSLLS LLIGGIIMAV GVIIARTVRL FFKKYYAPKL SKDSANNIGK LIYFGIIVIA FLIFVSTTGV DFSGMLVAGG IFGVVIGFAT QSVVSNLISG IFLMIEKPVR QGDSVEIPAE NISGTLIDIS TFSVRVRQFD GTIIRIPNEK FFTSNLRSLT SSPVRRSQGI VGIAYKEDID GAILVLQKAI AKSMPFVLVE PAPEFRISEL GDSSVNIEIL VWHPREDWGE VQPKLLKIAK NALDEAGIEI PFPQRVIWQG KE // ID A9A516_NITMS Unreviewed; 68 AA. AC A9A516; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11925.1}; GN OrderedLocusNames=Nmar_0025 {ECO:0000313|EMBL:ABX11925.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11925.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11925.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11925.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11925.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0025; -. DR EnsemblBacteria; ABX11925; ABX11925; Nmar_0025. DR KEGG; nmr:Nmar_0025; -. DR eggNOG; arCOG08813; Archaea. DR eggNOG; ENOG4110ZWA; LUCA. DR HOGENOM; HOG000023871; -. DR BioCyc; NMAR436308:GI3J-25-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 41 62 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 68 AA; 7581 MW; 78DD61D10762807A CRC64; MKDRKAKAKL IILLGIIWII VSLPLPWIIN NPLVSESQFF TILGIIGIIS IPFIALGVVW TLKPELTT // ID A9A327_NITMS Unreviewed; 143 AA. AC A9A327; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12155.1}; GN OrderedLocusNames=Nmar_0259 {ECO:0000313|EMBL:ABX12155.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12155.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12155.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12155.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12155.1; -; Genomic_DNA. DR ProteinModelPortal; A9A327; -. DR STRING; 436308.Nmar_0259; -. DR EnsemblBacteria; ABX12155; ABX12155; Nmar_0259. DR KEGG; nmr:Nmar_0259; -. DR eggNOG; arCOG02244; Archaea. DR eggNOG; COG2009; LUCA. DR HOGENOM; HOG000109818; -. DR KO; K00241; -. DR OMA; TQTTEGH; -. DR BioCyc; NMAR436308:GI3J-267-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016627; F:oxidoreductase activity, acting on the CH-CH group of donors; IEA:InterPro. DR InterPro; IPR000701; Succ_DH_Fumarate_Rdtase_TM-su. DR Pfam; PF01127; Sdh_cyt; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 24 45 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 92 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 120 141 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 143 AA; 15894 MW; 718EC06503D9C276 CRC64; MTQDEHKEGF KGMANPSRYG IERVAYWLMR LSGLGLLAYF IGHIYETSNI LRGRVGWNEF LELTQTTEGH IVLAIVIAMC VFHTVNGIRV MLGHGGVGVG KPARPDYPYD PASQNYRHKI GIYSAIILAA IAMMYGLAVM FGE // ID A9A5Y6_NITMS Unreviewed; 155 AA. AC A9A5Y6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13464.1}; GN OrderedLocusNames=Nmar_1568 {ECO:0000313|EMBL:ABX13464.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13464.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13464.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13464.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13464.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1568; -. DR EnsemblBacteria; ABX13464; ABX13464; Nmar_1568. DR KEGG; nmr:Nmar_1568; -. DR eggNOG; arCOG08827; Archaea. DR eggNOG; ENOG41111J1; LUCA. DR HOGENOM; HOG000110965; -. DR OMA; TITIHED; -. DR BioCyc; NMAR436308:GI3J-1612-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 125 149 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 155 AA; 16729 MW; 078AA721A59974FE CRC64; MLSKRTIIGL VVGSIIIGIG GYSLITHIGT ITIHEDYIVG TGDSTLYTIP APAGTPQTMN IVGDSFDLKL QSPGDGLQIP KTSYKKDATL EWVHNEDGPT IINIQNTGNT DLEITGTLIR SSDPIWFTFD LMVIISGMVI IGFSMGFTLR KPKGF // ID A9A1M7_NITMS Unreviewed; 118 AA. AC A9A1M7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13542.1}; GN OrderedLocusNames=Nmar_1646 {ECO:0000313|EMBL:ABX13542.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13542.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13542.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13542.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13542.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1646; -. DR EnsemblBacteria; ABX13542; ABX13542; Nmar_1646. DR KEGG; nmr:Nmar_1646; -. DR eggNOG; arCOG07573; Archaea. DR eggNOG; ENOG41111JT; LUCA. DR HOGENOM; HOG000109995; -. DR OMA; HILLHIG; -. DR BioCyc; NMAR436308:GI3J-1691-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 33 54 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 61 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 92 115 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 118 AA; 12873 MW; 43BC7A56E6A67E4A CRC64; MLFSLVVTGV VAILALPVII PHLLHGHHIA HIFLHVGGIT LAVFISILAG FAYYRLRTKR LLLSSIAFAN FIAAEVVLLV DATWPSIYDL EFMPLAEVGH LLTFATLGLL ALGVFRND // ID A9A583_NITMS Unreviewed; 152 AA. AC A9A583; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; GN Name=spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; GN OrderedLocusNames=Nmar_0386 {ECO:0000313|EMBL:ABX12282.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12282.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12282.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12282.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Stimulates transcription elongation. {ECO:0000256|HAMAP- CC Rule:MF_00950}. CC -!- SUBUNIT: Heterodimer composed of Spt4 and Spt5. Interacts with RNA CC polymerase (RNAP). {ECO:0000256|HAMAP-Rule:MF_00950}. CC -!- SIMILARITY: Belongs to the archaeal Spt5 family. CC {ECO:0000256|HAMAP-Rule:MF_00950}. CC -!- SIMILARITY: Contains 1 KOW domain. {ECO:0000256|HAMAP- CC Rule:MF_00950}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12282.1; -; Genomic_DNA. DR ProteinModelPortal; A9A583; -. DR STRING; 436308.Nmar_0386; -. DR EnsemblBacteria; ABX12282; ABX12282; Nmar_0386. DR KEGG; nmr:Nmar_0386; -. DR eggNOG; arCOG01920; Archaea. DR eggNOG; COG0250; LUCA. DR HOGENOM; HOG000229920; -. DR KO; K02601; -. DR OMA; PIPITIR; -. DR BioCyc; NMAR436308:GI3J-402-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003746; F:translation elongation factor activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 2.30.30.30; -; 1. DR HAMAP; MF_00950; Spt5_arch; 1. DR InterPro; IPR005824; KOW. DR InterPro; IPR006645; NGN_dom. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR011590; Spt5_arc. DR InterPro; IPR005100; TF_Spt5_NGN-domain. DR InterPro; IPR008991; Translation_prot_SH3-like. DR Pfam; PF00467; KOW; 1. DR Pfam; PF03439; Spt5-NGN; 1. DR SMART; SM00739; KOW; 1. DR SMART; SM00738; NGN; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR TIGRFAMs; TIGR00405; KOW_elon_Spt5; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00950}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00950}. FT DOMAIN 6 90 NGN. {ECO:0000259|SMART:SM00738}. FT DOMAIN 95 122 KOW. {ECO:0000259|SMART:SM00739}. FT DOMAIN 98 128 KOW. {ECO:0000256|HAMAP-Rule:MF_00950}. SQ SEQUENCE 152 AA; 16747 MW; 94957824AC203CA8 CRC64; MSEEVKSHLF AIRTTGGQEK VVMRLLEAKA NANQINIQSV FWVNDLKGYV VIEAINPSDA YMAVEGVRHI RGQLRGELEF KDIEGYLVKK STVSTLAVDN VVEITGGPFK GMKATITRID SDKEEATVVL LDASYQLPVT VDANYLKLST EG // ID A9A1D9_NITMS Unreviewed; 242 AA. AC A9A1D9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12774.1}; GN OrderedLocusNames=Nmar_0878 {ECO:0000313|EMBL:ABX12774.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12774.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12774.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12774.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12774.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0878; -. DR EnsemblBacteria; ABX12774; ABX12774; Nmar_0878. DR KEGG; nmr:Nmar_0878; -. DR eggNOG; arCOG06353; Archaea. DR eggNOG; ENOG4111G01; LUCA. DR HOGENOM; HOG000108368; -. DR OMA; TSETHTH; -. DR BioCyc; NMAR436308:GI3J-906-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR012666; CbtA_put. DR Pfam; PF09490; CbtA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 72 93 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 105 123 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 143 160 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 189 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 209 229 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 242 AA; 26683 MW; F01FB54202A348A1 CRC64; MKTSLFIIIV LISGAFAGLI HGTVNFAIVE PYLDQAIGIE NQNLFASGEE EDTPEFWVEY EGYRTWQKGG QILAGVILGT SVGALFGIVF ALSRNALPGN NDVKKSLILA GIMWLTLYII PFLKYPANPP TVGDGETVVL RAILYLSFIA ISGFGAVGFY QLSKKFKNNK KLVALIGYGI FISTVFFAMP ENPDEVTAPM DLVNEFRFMS VLGVTSFWAS IGIILGLFWR KLSPEQETTR YN // ID A9A2A6_NITMS Unreviewed; 332 AA. AC A9A2A6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE RecName: Full=NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; DE EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361}; DE AltName: Full=ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; GN Name=nadK {ECO:0000256|HAMAP-Rule:MF_00361}; GN OrderedLocusNames=Nmar_0921 {ECO:0000313|EMBL:ABX12817.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12817.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12817.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12817.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the regulation of the intracellular balance CC of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. CC Catalyzes specifically the phosphorylation on 2'-hydroxyl of the CC adenosine moiety of NAD to yield NADP. {ECO:0000256|HAMAP- CC Rule:MF_00361}. CC -!- CATALYTIC ACTIVITY: ATP + NAD(+) = ADP + NADP(+). CC {ECO:0000256|HAMAP-Rule:MF_00361}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00361}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00361}. CC -!- SIMILARITY: Belongs to the NAD kinase family. {ECO:0000256|HAMAP- CC Rule:MF_00361}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12817.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2A6; -. DR STRING; 436308.Nmar_0921; -. DR EnsemblBacteria; ABX12817; ABX12817; Nmar_0921. DR KEGG; nmr:Nmar_0921; -. DR eggNOG; arCOG00394; Archaea. DR eggNOG; arCOG01348; Archaea. DR eggNOG; COG0061; LUCA. DR HOGENOM; HOG000108401; -. DR KO; K00858; -. DR OMA; ATLMEYS; -. DR BioCyc; NMAR436308:GI3J-949-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003951; F:NAD+ kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019674; P:NAD metabolic process; IEA:InterPro. DR GO; GO:0006741; P:NADP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 2.60.200.30; -; 1. DR Gene3D; 3.40.50.10330; -; 1. DR HAMAP; MF_00361; NAD_kinase; 1. DR InterPro; IPR017438; ATP-NAD_kinase_dom_1. DR InterPro; IPR017437; ATP-NAD_kinase_PpnK-typ_all-b. DR InterPro; IPR016064; NAD/diacylglycerol_kinase. DR InterPro; IPR002504; NADK. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR PANTHER; PTHR20275; PTHR20275; 1. DR Pfam; PF01513; NAD_kinase; 1. DR SUPFAM; SSF111331; SSF111331; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00361}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00361}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000313|EMBL:ABX12817.1}; KW NAD {ECO:0000256|HAMAP-Rule:MF_00361}; KW NADP {ECO:0000256|HAMAP-Rule:MF_00361}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00361}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00361, KW ECO:0000313|EMBL:ABX12817.1}. FT NP_BIND 120 121 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT NP_BIND 161 166 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT ACT_SITE 49 49 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00361}. FT BINDING 150 150 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT BINDING 158 158 NAD; via carbonyl oxygen. FT {ECO:0000256|HAMAP-Rule:MF_00361}. SQ SEQUENCE 332 AA; 36576 MW; 53473C94C6AB5800 CRC64; MQIGIYGSGT TSNAAKIVKK ILDDAGIKSF TITKSKSKPA DCVIVLGGDK GVRNYFHRTF DSTLPILGIS EGETSGFLAQ IDLKEFASYV DILKKQKYTI EEVPRLGVKI DGKNVYPVLN DVAVFSSRSA MLMEHTLRVN GEEVWHDNSD GIIVSTPIGS SAYSMSAGGP VLFQDSAVFE IISVNSLDVT RRPIIVSNDS SIEIDDISAR LHCEVVLDGL DRYKVNKTVE CTQFFPPAKI IRLKKDSTAI SALAKKVHLA EELLSMPPSS KLLLKTLEYE GALTQKDLAN KTLLPDRTVR LALSHLLKKG YVKKKVSIRD ARQKIYEISK IE // ID A9A152_NITMS Unreviewed; 150 AA. AC A9A152; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Iron (Metal) dependent repressor, DtxR family {ECO:0000313|EMBL:ABX12013.1}; GN OrderedLocusNames=Nmar_0113 {ECO:0000313|EMBL:ABX12013.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12013.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12013.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12013.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12013.1; -; Genomic_DNA. DR ProteinModelPortal; A9A152; -. DR STRING; 436308.Nmar_0113; -. DR EnsemblBacteria; ABX12013; ABX12013; Nmar_0113. DR KEGG; nmr:Nmar_0113; -. DR eggNOG; arCOG02100; Archaea. DR eggNOG; COG1321; LUCA. DR HOGENOM; HOG000107747; -. DR KO; K03709; -. DR OMA; PASITNM; -. DR BioCyc; NMAR436308:GI3J-116-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0046914; F:transition metal ion binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 1.10.60.10; -; 1. DR InterPro; IPR001367; Fe_dep_repressor. DR InterPro; IPR022687; HTH_DTXR. DR InterPro; IPR022689; Iron_dep_repressor. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02742; Fe_dep_repr_C; 1. DR Pfam; PF01325; Fe_dep_repress; 1. DR SMART; SM00529; HTH_DTXR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF47979; SSF47979; 1. DR PROSITE; PS50944; HTH_DTXR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 15 75 HTH dtxR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50944}. SQ SEQUENCE 150 AA; 16880 MW; 8C5E8E7D9F519B2B CRC64; MDVLDEETLF VGTAEAEHVE MYLKAIWLLK ERGEEVKIST IAKMLNVRQP SVVQMLKKLN AKNLVTYNKA GVRLTDEGQT IGSSMMRNSR LLEVLMDSAL KVDIDEEMVC GIEHHMNKQF TDALCTMLKH PRTSPHGKEI PMGECCKSAS // ID A9A572_NITMS Unreviewed; 210 AA. AC A9A572; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12271.1}; GN OrderedLocusNames=Nmar_0375 {ECO:0000313|EMBL:ABX12271.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12271.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12271.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12271.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12271.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0375; -. DR EnsemblBacteria; ABX12271; ABX12271; Nmar_0375. DR KEGG; nmr:Nmar_0375; -. DR eggNOG; arCOG04641; Archaea. DR eggNOG; COG2860; LUCA. DR HOGENOM; HOG000218258; -. DR OMA; LIAIRYR; -. DR BioCyc; NMAR436308:GI3J-391-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR005115; UPF0126. DR Pfam; PF03458; UPF0126; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 55 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 67 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 98 118 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 124 145 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 157 173 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 179 197 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 14 87 UPF0126. {ECO:0000259|Pfam:PF03458}. FT DOMAIN 99 172 UPF0126. {ECO:0000259|Pfam:PF03458}. SQ SEQUENCE 210 AA; 22440 MW; E5F29F5FCE7CB4A4 CRC64; MVDYSSELGS FITILDYLGT IAFAVTGASK AIAHRADIFG IIVLATVVGV AGGITRDVTF GRFPNAFSDP IYIGLTVAVG IAMFFLYRKL QKRMGTWLVF DAVGLGVFSI LGASIAHQVV GLEFLPMLLA GVITAIGGGI LRDVFVREIP IVFVKEVYAV ASVIGIVVFY AILSSDIDIQ TASVVGISIT TAIRLLAMKY NWNLPKVQES // ID A9A1N4_NITMS Unreviewed; 272 AA. AC A9A1N4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=ABC-3 protein {ECO:0000313|EMBL:ABX13549.1}; GN OrderedLocusNames=Nmar_1653 {ECO:0000313|EMBL:ABX13549.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13549.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13549.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13549.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13549.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1N4; -. DR STRING; 436308.Nmar_1653; -. DR EnsemblBacteria; ABX13549; ABX13549; Nmar_1653. DR KEGG; nmr:Nmar_1653; -. DR eggNOG; arCOG01006; Archaea. DR eggNOG; COG1108; LUCA. DR HOGENOM; HOG000181429; -. DR KO; K09816; -. DR OMA; SAMRIMG; -. DR BioCyc; NMAR436308:GI3J-1698-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; IEA:InterPro. DR Gene3D; 1.10.3470.10; -; 1. DR InterPro; IPR001626; ABC_3. DR InterPro; IPR029022; ABC_BtuC-like. DR Pfam; PF00950; ABC-3; 1. DR SUPFAM; SSF81345; SSF81345; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 14 34 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 92 122 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 154 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 174 207 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 219 241 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 247 269 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 272 AA; 28760 MW; BB838476EB0A82FD CRC64; MSFEILTYSF MHRALISGIA IAILCSVVGL FLVLRRYSLF GDAIAHSSFG GIALGLLAGV YPLWTAYGVS IVSALIITRI KDRFNISGDA SIAVLLSSGI AVGLVVIGLS GGFTIDIFSF LFGSILLVSV DDTVLILALT GAILIVLLVL YRQILYSTFN EEQAKVSGIP VEKINYLIVF MAGITVVTSI QLVGVLLISA LFVIPNVSAI MYGKGFKQTA IISMSFSIFS VVTGILVSYI FDITPAGTIV LISIGLLAST MGIKSVGLLS KN // ID A9A374_NITMS Unreviewed; 438 AA. AC A9A374; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ABX12503.1}; GN OrderedLocusNames=Nmar_0607 {ECO:0000313|EMBL:ABX12503.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12503.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12503.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12503.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12503.1; -; Genomic_DNA. DR ProteinModelPortal; A9A374; -. DR STRING; 436308.Nmar_0607; -. DR REBASE; 16739; S2.NmaSCMORF606P. DR EnsemblBacteria; ABX12503; ABX12503; Nmar_0607. DR KEGG; nmr:Nmar_0607; -. DR eggNOG; arCOG02626; Archaea. DR eggNOG; COG0732; LUCA. DR HOGENOM; HOG000023863; -. DR KO; K01154; -. DR OMA; PGWRWVR; -. DR BioCyc; NMAR436308:GI3J-631-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 20 195 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT DOMAIN 239 415 Methylase_S. {ECO:0000259|Pfam:PF01420}. SQ SEQUENCE 438 AA; 50019 MW; 039989152549BB25 CRC64; MPKPGYKLVK SLFGKEIEIP ETWKICNLGD LLTKIQDGNY GESYPKESEF LDSGIPFIRG TEITKNFIDG KKVKYISKTK HDELQKAHIE TGDVLFLNRG GITRTVAIVP PKYDDANIGP QLTLLRCNTK IIHNKYLYYF IQGENFKKQV ISSDAGTALQ FFGIEKTKKF KITLPEIREQ QKIVSVLNSI DNLLSSYDKT IQTTQKLKKG LMQKLLTKGI DHKKFKKVPW LFGKEIEIPE EWEIKKIEDL FKLKSGSTPS RKIPEYFAGN IPWITSTDLN RSKITSTLEK ITPEAVKQTN LKLLPKGTFL IATYGLEAAG TRGKCGITKM ESTCNQACMA FLPSSEITSE FLFYFYLYFG EKIIFSIAQG TKQQNLYSDT LKKVSMFVPP QKEQKRIVNF LDQIDSHLFE LESKKTGLDK IKKGLIQKLL TSKIRVKF // ID A9A4R8_NITMS Unreviewed; 309 AA. AC A9A4R8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13372.1}; GN OrderedLocusNames=Nmar_1476 {ECO:0000313|EMBL:ABX13372.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13372.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13372.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13372.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13372.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1476; -. DR EnsemblBacteria; ABX13372; ABX13372; Nmar_1476. DR KEGG; nmr:Nmar_1476; -. DR eggNOG; arCOG09688; Archaea. DR eggNOG; ENOG410XX3S; LUCA. DR OMA; EERCVTS; -. DR BioCyc; NMAR436308:GI3J-1513-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 309 AA; 35539 MW; 2483DF8F5793DC54 CRC64; MKNIQELDSL IQVKPLEYDY FIYTKNSEKR SSNVLNIFKK SKIKIKNLIE LQFEDTQTPK IRTIGSRYVI TCPYRHVLMG IKSIFDLLHN LHFKINDKVC IDITGTDVPY FFHLLKTLKF KKMLSKIDLV YTEPETYKKT SNKFIFSEGI RNVKQFPAYT GRTNPNGKKI LLILIGFEGH RSYKVLDSIE PDKTLALNGF PSYSLEFKDT SILENKELLT SPSCKNNTLL ASAHNPFETL KILNNLPSSH KKHNLIMAPI GTKPMSLGAC LYCLKNESVR VVFPYPNSYI SKNAPAEKIG KTWIYQLVL // ID A9A1V8_NITMS Unreviewed; 143 AA. AC A9A1V8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Cytochrome c oxidase subunit II {ECO:0000313|EMBL:ABX12079.1}; GN OrderedLocusNames=Nmar_0183 {ECO:0000313|EMBL:ABX12079.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12079.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12079.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12079.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12079.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1V8; -. DR STRING; 436308.Nmar_0183; -. DR EnsemblBacteria; ABX12079; ABX12079; Nmar_0183. DR KEGG; nmr:Nmar_0183; -. DR eggNOG; arCOG01236; Archaea. DR eggNOG; COG1622; LUCA. DR HOGENOM; HOG000110875; -. DR KO; K02275; -. DR OMA; CGPGHYT; -. DR BioCyc; NMAR436308:GI3J-185-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0004129; F:cytochrome-c oxidase activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR001505; Copper_CuA. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR002429; Cyt_c_oxidase_su2_C. DR Pfam; PF00116; COX2; 1. DR SUPFAM; SSF49503; SSF49503; 1. DR PROSITE; PS00078; COX2; 1. DR PROSITE; PS50857; COX2_CUA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 39 143 COX2_CUA. {ECO:0000259|PROSITE:PS50857}. SQ SEQUENCE 143 AA; 16448 MW; 79551B7EE976ABD5 CRC64; MGGHSNWPEW IYVGVVIAIM CWVGAEAWEA ERLVEHVPEG AEIIKVTGQQ WFWTFEHEDG TKEIGELHVE KGKAYKFEIH STDVNHSFNI HDYVVLMDAI PGRVNTVWFA PTDVGEHDIQ CREYCGLIHY NMRGTLIVEE PHS // ID A9A3S6_NITMS Unreviewed; 125 AA. AC A9A3S6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13338.1}; GN OrderedLocusNames=Nmar_1442 {ECO:0000313|EMBL:ABX13338.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13338.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13338.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13338.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13338.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1442; -. DR EnsemblBacteria; ABX13338; ABX13338; Nmar_1442. DR KEGG; nmr:Nmar_1442; -. DR BioCyc; NMAR436308:GI3J-1477-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 125 AA; 14100 MW; 3112A0BB8BC000D7 CRC64; MMLNYIVNTL NLVLIGIVVV LGVALMITLI QNQSLSNELQ LDDTLRTAEL IDTFKGKYSD REISEFYDSK GIPYKYSAKN GDTYVDLILE KDRIVLKAWS GDGDTLCVVS NPLPRDILDN CPLKW // ID A9A2J4_NITMS Unreviewed; 116 AA. AC A9A2J4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13233.1}; GN OrderedLocusNames=Nmar_1337 {ECO:0000313|EMBL:ABX13233.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13233.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13233.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13233.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13233.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2J4; -. DR STRING; 436308.Nmar_1337; -. DR EnsemblBacteria; ABX13233; ABX13233; Nmar_1337. DR KEGG; nmr:Nmar_1337; -. DR eggNOG; arCOG01568; Archaea. DR eggNOG; COG0668; LUCA. DR BioCyc; NMAR436308:GI3J-1371-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR006685; MscS_channel. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 42 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 116 AA; 12648 MW; 8257ACCD7A0DCA22 CRC64; MLLIFITLGE AIYLGTTFGL FDLALEVITS IGAAAVVIGI ALQNQLKNII SGIGIFLNPQ INVGDKIEFD YVRCQITGLH LTKVVAVTND GSKIIIPNHK LSEEMVEIFP KKRHVS // ID A9A1M9_NITMS Unreviewed; 572 AA. AC A9A1M9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13544.1}; GN OrderedLocusNames=Nmar_1648 {ECO:0000313|EMBL:ABX13544.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13544.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13544.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13544.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13544.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1648; -. DR EnsemblBacteria; ABX13544; ABX13544; Nmar_1648. DR KEGG; nmr:Nmar_1648; -. DR eggNOG; arCOG08793; Archaea. DR eggNOG; ENOG41110FI; LUCA. DR HOGENOM; HOG000110006; -. DR OMA; FEITFFD; -. DR BioCyc; NMAR436308:GI3J-1693-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 572 AA; 63634 MW; BBA4CF4E89C4F13C CRC64; MVLHNKFALF ITIIGIFTIP ALVPDVFGHG LGGDQAPAIS FGDMAVTVST QLTPSDITVG EVDTANMQVR FFDTVTDTNL DKVTYRIEVW QSGELLARNL FYDLDGRLDV KITPKTDCNE ENLHQCSVYY GSEHVSAPGA LFVYGTDCND ENLDVCARPE ITGPIFIEGG LYQIRVDIEA ATSPKSILAN LLSYDTFVSI AQDQNFMIQT ANADIPVVVK TYYDQVDNFN FDQSDNSISF DMPFDWTPEY VDLVQVVHEE VRVPKTFAPY AEGKQFKGYV NGIEVDQRAL LNDPYSYDDT NVVHFLITNQ ELQRINETLG EANYENPKMD LKLVPLDEIE KQSTEFYLVD TTNYEPVPTT VNISWDGSYG AGDEIPFEIT FFDENRELIR DMRYVVSFID ENDEVLETFL GDDPQMPGIV ATEGIDIKKI YVPSQGVYRI DIRALGTGLA YDETYAGIGS GIIELGPSTG KTVPTPEEQT PAAIPAWIKN NAEWWAAGQI DDGSFVQGIQ YLVKENILQI PPTSAGEGTG SNEIPAWIKN NAGWWAEGAI DDDAFIQGIQ FLIKEGIMKV QS // ID A9A4S5_NITMS Unreviewed; 209 AA. AC A9A4S5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13379.1}; GN OrderedLocusNames=Nmar_1483 {ECO:0000313|EMBL:ABX13379.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13379.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13379.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13379.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13379.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1483; -. DR EnsemblBacteria; ABX13379; ABX13379; Nmar_1483. DR KEGG; nmr:Nmar_1483; -. DR eggNOG; arCOG08638; Archaea. DR eggNOG; ENOG41110SR; LUCA. DR HOGENOM; HOG000105062; -. DR OMA; YHKCEVL; -. DR BioCyc; NMAR436308:GI3J-1521-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 209 AA; 23550 MW; 81329A8765AEC555 CRC64; MVNKGFPKFG MSQAGAFVAA LKNYNLPDFI LVLIAKECKS ELLERGRIDD RLQSMNDEAL ELLHKVFVEC EEDKAGKYAQ YRFYAYVSSM YHKCEVLVNE TIPGKKKNHK MPVAVKNNGM YIAVAHNKAT GHPVNKKDTT KFYEIVDDIK SGDHGTMLTD AIYASSVGFR GDALVELETL SKSRKDDAEN QLNFKTANFE NNIYSVTKC // ID A9A3C2_NITMS Unreviewed; 219 AA. AC A9A3C2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX12551.1}; GN OrderedLocusNames=Nmar_0655 {ECO:0000313|EMBL:ABX12551.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12551.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12551.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12551.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12551.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3C2; -. DR STRING; 436308.Nmar_0655; -. DR EnsemblBacteria; ABX12551; ABX12551; Nmar_0655. DR KEGG; nmr:Nmar_0655; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000105582; -. DR OMA; HRIANCV; -. DR BioCyc; NMAR436308:GI3J-680-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.30.10; -; 2. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 26 219 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 219 AA; 24862 MW; DEBD967D81820585 CRC64; MPTKIVIAAA VIVVGIAMSI YAVTGMDMNT KVAEAARVDV ENIKQYSHSL GNSNAPITII EFGDFQCPFC SEWYKETAMP LKEKYIESGQ VELVFVDYPF LGDDSYPTAH ASYCAEQQGM YWEFHEILYL NQGDTNDGWA SADKIRDFAS QINLDMEKYD ECMSSSEFNQ KIDQSLKLGE VHEVNQTPTF IVVNERGEYQ KIEGKQPLVV FEELMQKMK // ID A9A4Q5_NITMS Unreviewed; 123 AA. AC A9A4Q5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13033.1}; GN OrderedLocusNames=Nmar_1137 {ECO:0000313|EMBL:ABX13033.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13033.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13033.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13033.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13033.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13033; ABX13033; Nmar_1137. DR KEGG; nmr:Nmar_1137; -. DR eggNOG; arCOG10549; Archaea. DR eggNOG; ENOG41111MI; LUCA. DR HOGENOM; HOG000023869; -. DR BioCyc; NMAR436308:GI3J-1169-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 123 AA; 13777 MW; F1A4EF7B7EA5EAC5 CRC64; MKAYNIMIVF GITVIVIIGG VMGFPIAKMF VGIPDYDIRV DAVIDEQEIT PIGQVLIQNT GSKPLTEVKI DFGEGEKMEL GTLDVRDRMI LTPPYNNKME SVTVSADHHI SVNKEYRNEN LQH // ID A9A5Y9_NITMS Unreviewed; 244 AA. AC A9A5Y9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE RecName: Full=6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; DE Short=HPPK {ECO:0000256|HAMAP-Rule:MF_02131}; DE EC=2.7.6.3 {ECO:0000256|HAMAP-Rule:MF_02131}; DE AltName: Full=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; DE AltName: Full=6-hydroxymethyl-7,8-dihydropterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; DE AltName: Full=7,8-dihydro-6-hydroxymethylpterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; DE AltName: Full=7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; GN Name=mptE {ECO:0000256|HAMAP-Rule:MF_02131}; GN OrderedLocusNames=Nmar_1571 {ECO:0000313|EMBL:ABX13467.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13467.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13467.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13467.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the transfer of diphosphate from ATP to 6- CC hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6- CC hydroxymethyl-7,8-dihydropterin diphosphate (6-HMDP). CC {ECO:0000256|HAMAP-Rule:MF_02131}. CC -!- CATALYTIC ACTIVITY: ATP + 6-hydroxymethyl-7,8-dihydropterin = AMP CC + 6-hydroxymethyl-7,8-dihydropterin diphosphate. CC {ECO:0000256|HAMAP-Rule:MF_02131}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_02131}; CC -!- SIMILARITY: Belongs to the archaeal 6-HMPDK family. CC {ECO:0000256|HAMAP-Rule:MF_02131}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13467.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1571; -. DR EnsemblBacteria; ABX13467; ABX13467; Nmar_1571. DR KEGG; nmr:Nmar_1571; -. DR eggNOG; arCOG04303; Archaea. DR eggNOG; COG1634; LUCA. DR HOGENOM; HOG000226046; -. DR KO; K07142; -. DR OMA; CECIVAV; -. DR BioCyc; NMAR436308:GI3J-1615-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003848; F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004788; F:thiamine diphosphokinase activity; IEA:InterPro. DR GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:InterPro. DR HAMAP; MF_02131; HMPDK_arch; 1. DR InterPro; IPR027510; HMPDK_MptE. DR InterPro; IPR002826; MptE-like. DR InterPro; IPR007371; TPK_catalytic. DR Pfam; PF01973; MAF_flag10; 1. DR SUPFAM; SSF63999; SSF63999; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_02131}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_02131}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_02131}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_02131}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_02131}. SQ SEQUENCE 244 AA; 27495 MW; 739AE6B9D058FDE2 CRC64; MMISGWKAKY ADILKEFKYD EKKDKESAIL LDTILKKSKT IKKIQDLIQG NTVLVIGSGP SLSHAIPKLK KLKRVIIIAA DSSLKPLLEN GIVPDIVVTD LDGDEKSFKK IAKRSIFVVH AHGDNIEKLE FVKKFKNCVG TTQTKPFNKI ENFGGFTDGD RGVFLASYFE AKKIILFGMD FGDRIGKFSN TKKSERKIKL MKLKKGKLLL EWLSTKTKSE LFTTSTSIKG FEKIPYKSLD IIIT // ID A9A539_NITMS Unreviewed; 387 AA. AC A9A539; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Thiamine biosynthesis ATP pyrophosphatase-like protein {ECO:0000313|EMBL:ABX11948.1}; GN OrderedLocusNames=Nmar_0048 {ECO:0000313|EMBL:ABX11948.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11948.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11948.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11948.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11948.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0048; -. DR EnsemblBacteria; ABX11948; ABX11948; Nmar_0048. DR KEGG; nmr:Nmar_0048; -. DR eggNOG; arCOG00038; Archaea. DR eggNOG; COG0301; LUCA. DR HOGENOM; HOG000110610; -. DR OMA; GPNNVHD; -. DR BioCyc; NMAR436308:GI3J-48-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 387 AA; 43507 MW; 115F6CBD84413C6C CRC64; MITRSFVLNY KQVDFKVENM NETSYVVVFP TIFSKNKIPQ LISNIKKILK IKNQEFKSVK RDGEIILVDA NDPVFASSAI NMLFGIQEVA IARQKKNDYQ EIVSEITSVG GNLLLKGEKF LVKVEGISKG FLVKDVEIAA TSSIIEKKSK LGAHPGTEQD YDKLLYTYLT KNNAYICIFS DKGKGGIPYQ SQSEKTICAV YDELSAVSCY ETIKQGYDTK VIVCYRQKSE LMNLAKTLNQ IIPRLVQEKI ELEFFHLKIN PKGVKNYLTY VNSVVEIMLQ SSIKRVSLAI SPQIFSSDFL DNALKLVFSK KKIPLVPLAG VDTNLFDEAK EIGLERNIKK LENIAAISSD EIPVFVKKEV EKALKTKKVI SIQAGPNNVH DILDSLE // ID A9A5Y0_NITMS Unreviewed; 450 AA. AC A9A5Y0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE RecName: Full=tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS {ECO:0000256|HAMAP-Rule:MF_01892}; DE Short=tRNA(Ile2)-agm2C synthetase {ECO:0000256|HAMAP-Rule:MF_01892}; DE EC=6.3.4.22 {ECO:0000256|HAMAP-Rule:MF_01892}; DE AltName: Full=tRNA(Ile2) agmatidine synthetase {ECO:0000256|HAMAP-Rule:MF_01892}; GN Name=tiaS {ECO:0000256|HAMAP-Rule:MF_01892}; GN OrderedLocusNames=Nmar_1562 {ECO:0000313|EMBL:ABX13458.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13458.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13458.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13458.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: ATP-dependent agmatine transferase that catalyzes the CC formation of 2-agmatinylcytidine (agm2C) at the wobble position CC (C34) of tRNA(Ile2), converting the codon specificity from AUG to CC AUA. {ECO:0000256|HAMAP-Rule:MF_01892}. CC -!- CATALYTIC ACTIVITY: ATP + agmatine + (tRNA(Ile)(2))-cytidine(34) + CC H(2)O = (tRNA(Ile)(2))-2-agmatinylcytidine(34) + AMP + 2 CC phosphate. {ECO:0000256|HAMAP-Rule:MF_01892}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01892}. CC -!- SIMILARITY: Belongs to the TiaS family. {ECO:0000256|HAMAP- CC Rule:MF_01892}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13458.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y0; -. DR STRING; 436308.Nmar_1562; -. DR EnsemblBacteria; ABX13458; ABX13458; Nmar_1562. DR KEGG; nmr:Nmar_1562; -. DR eggNOG; arCOG01115; Archaea. DR eggNOG; COG1571; LUCA. DR HOGENOM; HOG000225999; -. DR KO; K06932; -. DR OMA; GMCTTYL; -. DR BioCyc; NMAR436308:GI3J-1606-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016879; F:ligase activity, forming carbon-nitrogen bonds; IEA:UniProtKB-HAMAP. DR GO; GO:0002101; P:tRNA wobble cytosine modification; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01892; tRNA_Ile2_agm2C_synt; 1. DR InterPro; IPR013696; DUF1743. DR InterPro; IPR024913; tRNA_Ile2__agm2C_synt. DR Pfam; PF08489; DUF1743; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01892}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01892}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_01892}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01892}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW tRNA processing {ECO:0000256|HAMAP-Rule:MF_01892}. FT DOMAIN 151 264 DUF1743. {ECO:0000259|Pfam:PF08489}. SQ SEQUENCE 450 AA; 50618 MW; B41E3DB4E4E87827 CRC64; MSELVTKNVV KKTVLNIGFD DTDSPKGMCT TFLAYKVVDL LKKQKTEFLD FPRLIRFNPN IPWKTRGNGA VSIKIKTSNP SKIKNQIKNL VSKYSDTKNG ANPGLVFFES DSIPNEFTKF SNLALWQLIN RNNAKKFAKK NNLEYFYKGN GQGLVGAIGA IGYDFNDHTL ELLSYRKKQK FGKERKISTK SVKEMQEKTY PDTFNSFDTK KGRVLITPHG PDPVFFGVRG ENVDALVSAS KILKSEEKLD GYMIFKSNQG TGDHLKNELT FETMKPYASG KLTGVVSNSP RIAKGGHVFF KILSNGNEFW CAVYKPTGMS VIASNLIKGD KISVGGGVRK ASKNFPRIIN LEFIQIISLK KQTKTSNPIC KKCTKKMKSK GKGQGFECIR CGKKSSRKIN EIVTRNLGPQ LYLPKISAHR HLTRPQQRQG IQNKSTNFKN SLSWFCVYQN // ID A9A462_NITMS Unreviewed; 392 AA. AC A9A462; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12246.1}; GN OrderedLocusNames=Nmar_0350 {ECO:0000313|EMBL:ABX12246.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12246.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12246.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12246.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12246.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0350; -. DR EnsemblBacteria; ABX12246; ABX12246; Nmar_0350. DR KEGG; nmr:Nmar_0350; -. DR eggNOG; arCOG08777; Archaea. DR eggNOG; ENOG4110ZNH; LUCA. DR HOGENOM; HOG000109392; -. DR OMA; GFLEVER; -. DR BioCyc; NMAR436308:GI3J-365-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 392 AA; 43681 MW; 9709CB0EE3B4E72F CRC64; MFDFLFLIFI LPFATAQEIP DYDKPYAPIF FDKPIYSWTD KIQIKIIAPS WNTDKDLIDS IGDNNDNPIK ISTRSHSLEP YRLTETDVSS GIFTGEIILT GFLHDADGDG DYDTTPRTIG TGPTSGFLEV ERDSAITVSF EFADGVVLSE SVPVSWNLGT IEFENDVFFN DESVTVRIID LDMNLNPEAI DHVPVEVFSD SDVGGITANA IETSESSGYF VATISLTQNS ASSGNRLYAV PGDEISARYS DHTLPKPYSE SDNLEIQAQS RVESSVPSTM RLENSEINIS DSFGNYLTSF SSNQQIQIVG SLSNMQEFDQ KFVYLFQIKN SQNYIESLSW IQGQLSYGQN LDVSQSWIPK NSGDYFVETF VWTSLKDPTA LSDPLTRLIS VE // ID A9A133_NITMS Unreviewed; 379 AA. AC A9A133; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11994.1}; GN OrderedLocusNames=Nmar_0094 {ECO:0000313|EMBL:ABX11994.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11994.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11994.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11994.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11994.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0094; -. DR EnsemblBacteria; ABX11994; ABX11994; Nmar_0094. DR KEGG; nmr:Nmar_0094; -. DR eggNOG; arCOG00250; Archaea. DR eggNOG; COG1250; LUCA. DR HOGENOM; HOG000110798; -. DR OMA; TYPNVSS; -. DR BioCyc; NMAR436308:GI3J-96-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR016040; NAD(P)-bd_dom. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 379 AA; 41954 MW; 45603219F730A081 CRC64; MGGTKIVVYG LSTEGYAIAS QMAIKGADVY IIDESTPSAI SLKAEIAKTY PNVSSLKEDE PLLAMEPIEV AISKAQYLFF TPRIRKTGQD IKTEIHSKFK DATASLKKKS SVVFTLPTGF GGNNENISLL EHVTGLEVGK DISYFYYPLE GIEQQPKIIG SFNGKKDSVL SDLLTTGKKE KNFVAISSSE HFHAINVLSR FSSLCSVLEV CKYAQDEITK NDLSSDDFQE IFLDDMVGGL LDLKSLGSSF EGANTLMYLI NGSVKGIDGY IKRLIDEIRA TLKKNDLKAS RTKIALSWTL DQHSMRGDKI EMLQNLTSRL RDYIGDVEAY EDPNFDLFHS DKTTIVVACS KSDFTNIEKT KQDSDLIIVK ANPLCETIQ // ID A9A2N0_NITMS Unreviewed; 97 AA. AC A9A2N0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13269.1}; GN OrderedLocusNames=Nmar_1373 {ECO:0000313|EMBL:ABX13269.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13269.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13269.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13269.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13269.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1373; -. DR EnsemblBacteria; ABX13269; ABX13269; Nmar_1373. DR KEGG; nmr:Nmar_1373; -. DR BioCyc; NMAR436308:GI3J-1407-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 49 68 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 75 94 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 97 AA; 10487 MW; C783202F63E1F568 CRC64; MAKSAGLIPT AVIQGFSLGI LMRFNIDITP AGILKMISPA LEPLVVEQTA WIIPVVLLVL TILPIIAIIK IFQRFGILGI IVYAVIAIGV WYLVMTS // ID A9A2A4_NITMS Unreviewed; 533 AA. AC A9A2A4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227}; DE EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227}; DE AltName: Full=CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; DE AltName: Full=UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; GN Name=pyrG {ECO:0000256|HAMAP-Rule:MF_01227}; GN OrderedLocusNames=Nmar_0919 {ECO:0000313|EMBL:ABX12815.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12815.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12815.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12815.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the ATP-dependent amination of UTP to CTP with CC either L-glutamine or ammonia as the source of nitrogen. CC {ECO:0000256|HAMAP-Rule:MF_01227}. CC -!- CATALYTIC ACTIVITY: ATP + UTP + L-glutamine = ADP + phosphate + CC CTP + L-glutamate. {ECO:0000256|HAMAP-Rule:MF_01227}. CC -!- ENZYME REGULATION: Allosterically activated by GTP, when glutamine CC is the substrate. Inhibited by CTP. {ECO:0000256|HAMAP- CC Rule:MF_01227}. CC -!- PATHWAY: Pyrimidine metabolism; CTP biosynthesis via de novo CC pathway; CTP from UDP: step 2/2. {ECO:0000256|HAMAP- CC Rule:MF_01227}. CC -!- SIMILARITY: Belongs to the CTP synthase family. CC {ECO:0000256|HAMAP-Rule:MF_01227}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000256|HAMAP-Rule:MF_01227}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12815.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2A4; -. DR STRING; 436308.Nmar_0919; -. DR MEROPS; C26.964; -. DR EnsemblBacteria; ABX12815; ABX12815; Nmar_0919. DR KEGG; nmr:Nmar_0919; -. DR eggNOG; arCOG00063; Archaea. DR eggNOG; COG0504; LUCA. DR HOGENOM; HOG000077515; -. DR KO; K01937; -. DR OMA; FDHNITT; -. DR BioCyc; NMAR436308:GI3J-947-MONOMER; -. DR UniPathway; UPA00159; UER00277. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003883; F:CTP synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0044210; P:'de novo' CTP biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_01227; PyrG; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR004468; CTP_synthase. DR InterPro; IPR017456; CTP_synthase_N. DR InterPro; IPR017926; GATASE. DR InterPro; IPR027417; P-loop_NTPase. DR PANTHER; PTHR11550; PTHR11550; 1. DR Pfam; PF06418; CTP_synth_N; 1. DR Pfam; PF00117; GATase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00337; PyrG; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01227}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_01227}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000313|EMBL:ABX12815.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01227}; KW Pyrimidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01227}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 304 533 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. FT REGION 1 255 Aminator domain. {ECO:0000256|HAMAP- FT Rule:MF_01227}. FT ACT_SITE 383 383 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_01227}. FT ACT_SITE 509 509 {ECO:0000256|HAMAP-Rule:MF_01227}. FT ACT_SITE 511 511 {ECO:0000256|HAMAP-Rule:MF_01227}. SQ SEQUENCE 533 AA; 59031 MW; 26D234CED29C0167 CRC64; MQTKFIFVTG GVMSGLGKGV TTSSIAKLLQ LADQKVSCIK IDPYLNYDAG TMNPVAHGEV FVTDDGGECD MDIGNYERFL NQDIPKSHNI TTAQVYSSVI EAERKGEYLG ACVQIIPHVT DEIKNRIRNI AENEKLDFLI VECGGTVGDI ESLPFLEALR QMRVEEGPEG VIFVHVTLAP SLDVVGEQKT KPTQHSAQEL RRIGIQPDFL AVRCTLPLEE KTKKKIAMFT NVTAKDVLSC HDAKSIFEVP QMLYDQGIMD AIFTKFGIVG MVNASANWDK WNTIAQNMVN HEDQKVKIAM VGKYVTLADS YVSVNHALKH AGAQIGKSID IDWIDSESIT DYSVLSKYDG ILVPGGFGTR GSEGIIQTAN YARENNIPYL GICFGFQLAV IAFGRNVLKL DDANSTEIEP NTANPIVDLL PEQKDVSDMG GSLRLGANEV LIKENTNAQK IYGTTTISKR HRHRYEINKE YIPKFEENGL IFSADSDNGK RMEMLEIPSH KFYLGVQFHP EFNSRPGFPE EAFAAFIKAA SEK // ID A9A4D1_NITMS Unreviewed; 219 AA. AC A9A4D1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12620.1}; GN OrderedLocusNames=Nmar_0724 {ECO:0000313|EMBL:ABX12620.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12620.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12620.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12620.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12620.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12620; ABX12620; Nmar_0724. DR KEGG; nmr:Nmar_0724; -. DR eggNOG; arCOG05906; Archaea. DR eggNOG; ENOG411254R; LUCA. DR HOGENOM; HOG000023867; -. DR OMA; INHSAME; -. DR BioCyc; NMAR436308:GI3J-750-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 219 AA; 25127 MW; 053C7429763C8174 CRC64; MDLEKFRNDV YDMTEKLSVN LKEKDFPKLN YVRQQLIEMY QKNLVKINHS ILELICASNL ISRGYAVDVE KEISEILVCD IFAKKGGGNT IIEIETGFTP PEHAMDTIDY FTARIMSKIA RYSQHCSKFS LASPATGILP IPKIFLLPPN ARKKEDVQKV KDLCDKYYKN PPIEYDDILN AHLHSVYLIN IDGGFVKELD PQGYVDLTND LLSRSEIEY // ID A9A4M2_NITMS Unreviewed; 939 AA. AC A9A4M2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 66. DE RecName: Full=UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205}; DE Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205}; DE AltName: Full=Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; GN Name=uvrA {ECO:0000256|HAMAP-Rule:MF_00205}; GN OrderedLocusNames=Nmar_1104 {ECO:0000313|EMBL:ABX13000.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13000.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13000.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13000.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: The UvrABC repair system catalyzes the recognition and CC processing of DNA lesions. UvrA is an ATPase and a DNA-binding CC protein. A damage recognition complex composed of 2 UvrA and 2 CC UvrB subunits scans DNA for abnormalities. When the presence of a CC lesion has been verified by UvrB, the UvrA molecules dissociate. CC {ECO:0000256|HAMAP-Rule:MF_00205}. CC -!- SUBUNIT: Forms a heterotetramer with UvrB during the search for CC lesions. {ECO:0000256|HAMAP-Rule:MF_00205}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00205}. CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. UvrA CC family. {ECO:0000256|HAMAP-Rule:MF_00205}. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC -!- SIMILARITY: Contains 2 ABC transporter domains. CC {ECO:0000256|HAMAP-Rule:MF_00205}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13000.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M2; -. DR SMR; A9A4M2; 4-938. DR STRING; 436308.Nmar_1104; -. DR EnsemblBacteria; ABX13000; ABX13000; Nmar_1104. DR KEGG; nmr:Nmar_1104; -. DR eggNOG; arCOG04694; Archaea. DR eggNOG; COG0178; LUCA. DR HOGENOM; HOG000050448; -. DR KO; K03701; -. DR OMA; GAIKGWD; -. DR BioCyc; NMAR436308:GI3J-1135-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0009380; C:excinuclease repair complex; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009381; F:excinuclease ABC activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006289; P:nucleotide-excision repair; IEA:UniProtKB-HAMAP. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1490.20; -; 2. DR Gene3D; 3.40.50.300; -; 4. DR HAMAP; MF_00205; UvrA; 1. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR004602; UvrA. DR Pfam; PF00005; ABC_tran; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR TIGRFAMs; TIGR00630; uvra; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 2. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00205, KW ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00205}; KW DNA damage {ECO:0000256|HAMAP-Rule:MF_00205}; KW DNA excision {ECO:0000256|HAMAP-Rule:MF_00205}; KW DNA repair {ECO:0000256|HAMAP-Rule:MF_00205}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00205}; KW Excision nuclease {ECO:0000256|HAMAP-Rule:MF_00205}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00205}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00205, KW ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repeat {ECO:0000256|HAMAP-Rule:MF_00205}; KW SOS response {ECO:0000256|HAMAP-Rule:MF_00205}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00205}; KW Zinc-finger {ECO:0000256|HAMAP-Rule:MF_00205}. FT DOMAIN 309 587 ABC transporter 1. {ECO:0000256|HAMAP- FT Rule:MF_00205}. FT DOMAIN 598 934 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. FT DOMAIN 607 934 ABC transporter 2. {ECO:0000256|HAMAP- FT Rule:MF_00205}. FT NP_BIND 33 40 ATP. {ECO:0000256|HAMAP-Rule:MF_00205}. FT ZN_FING 252 279 C4-type. {ECO:0000256|HAMAP- FT Rule:MF_00205}. FT NP_BIND 638 645 ATP. {ECO:0000256|HAMAP-Rule:MF_00205}. FT ZN_FING 737 763 C4-type. {ECO:0000256|HAMAP- FT Rule:MF_00205}. SQ SEQUENCE 939 AA; 104712 MW; EBD1A10674D6B972 CRC64; MTENKLKIRG ARHHNLKNID IDIPKNKLVV ISGLSGSGKS TLAFDTIYAE GQRRYVESLS AYARQFLEMM DKPDVDSIDG LSPAISIQQK TTSKNPRSTV GTTTEIYDYM RLLYARIGIP YCTNCGRKIS TQSIETICDS VLREFSGKKI LILSPIIQRK KGTYEKLFEQ IKKDGYSRIR LNGEILSLDE EIPPLDRQKW HNIEIVVDRI TTEKSERSRL FEAIQTAIKA SKGDVMVASE KSEKVFSQNN ACPYCGLTVG ELEPRNFSFN SPFGLCKDCN GLGVKMEFDP DLVIPDKTKS ILDGAIVPWS GRFSSFRRQA LRAVGKKFGF DLMTPINKIK PKHLKIILYG TDDLIDFNYR SKSGDSSWQY TNAFEGVLDN LQRVFMETDS ESKREWLKQF MRDTPCNGCN GKKLKPESLA VKINDKGIMD VCDLSIDHCY DFFSTLKLTE NEQYIARDVL KEIKERLEFL MNVGLNYLTL NRLSSTLSGG ESQRIRLATQ IGSNLTGVLY VLDEPTIGLH QRDNARLIKT LNKLRNLGNT VIVVEHDEEV IRNSDWMVDL GPGAGVNGGS VVFEGTVNQI LNGHKSVTGD YLKDNSLIML QDKIRNNSGT LVVEKASENN LKDIDVEIPL GLFVSITGVS GSGKSTLIND ILLKALENHF YKSNVKPGTH KKIVGLENID KVIAIDQSPI GRTPRSNPAT YIGAFTPIRE LYANTELSKE RGYAPGQFSF NVADGRCFAC DGDGVKQIEM QFLSDVYVKC DECKGKRYNS ETLSVLYKGK NISDVLDMTV YEALNFFENI PAIKRKLQTI YDVGLGYIKL GQSSTTLSGG EAQRVKLASE LSKRGTGKTM YILDEPTTGL HFADVQKLLD VLNRLANLGN TVVVIEHNMD VIKNSDWIID LGPEGGDEGG RIVATGTPKD IAKAPGSYTG KYLKKLVKK // ID A9A239_NITMS Unreviewed; 826 AA. AC A9A239; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX12452.1}; GN OrderedLocusNames=Nmar_0556 {ECO:0000313|EMBL:ABX12452.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12452.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12452.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12452.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12452.1; -; Genomic_DNA. DR ProteinModelPortal; A9A239; -. DR STRING; 436308.Nmar_0556; -. DR EnsemblBacteria; ABX12452; ABX12452; Nmar_0556. DR KEGG; nmr:Nmar_0556; -. DR eggNOG; arCOG01021; Archaea. DR eggNOG; arCOG02358; Archaea. DR eggNOG; COG0683; LUCA. DR BioCyc; NMAR436308:GI3J-578-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR001828; ANF_lig-bd_rcpt. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR028082; Peripla_BP_I. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF01094; ANF_receptor; 1. DR Pfam; PF02518; HATPase_c; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SUPFAM; SSF53822; SSF53822; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12452.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12452.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 500 521 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 730 824 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 826 AA; 91055 MW; CCFD2108D68E7B70 CRC64; MKNIVFLSFL IFFVMSFTLV DVYGQSDNEQ SSEIVSCTEG YELVSKPSGD SSICVKSSSL ENFLDRGYTL ATSTQENLRV GLLFSTSGDA STYGLESQHA ALIAIDDFNE YLKYIENEQI ILVPEIVSLK IDPEHTLEQV KRMHLDGVDV FIGPDTSAEL EFMKSYVDSE GLLVISTSST APSLAIEDNI FRLVPDDTHQ TRLLALLAES AGSPTVFLLV RDDTWGNDFA SAIEEYYSGN VSIIHYDPVS PLYEQTLQQL SESITAEITA SEITTSDFRV GMIGFGESAE FLSRATQFDI LDDVIWFGTD FTANEKKITE NEKAVEFAQN VSFKALQFSA DIESTAYQEI ETKLFGKLGY LPDIYAFTAY DAVWILGLSM LDAASTNPND LALEIPSTIT SYNGALGNLE LNDAGDLVSD NYAVWSIVDG AWYKGNYAKN MESGIIELVE TDLEELATDE TILEKSAPPA DDEIPIAQPS TIDDEIPITQ PSTAYDEQSI LVNLLIALII VVSAIAGFAI WKLRTLSIKL KNFIHTQKIE PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE PTPEPEPTPE PEPTPEPEPT PEPEPTPEPE PTPEPEPTPE PEPTPEPEPV EPKDSVRLLS SKEILQKCIQ THSSLMTDKE IDFSDSSIKN VKFVSNEKPI LEIFSNLIRA SHHLVGSYGQ IEIGVNDDED ITFFVKDNGN GISKEEQEKV FEQNDGPLGL MGTKELVQDM GGKIWIESVS FLGTTFYFSI PVHPNS // ID A9A173_NITMS Unreviewed; 333 AA. AC A9A173; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12359.1}; GN OrderedLocusNames=Nmar_0463 {ECO:0000313|EMBL:ABX12359.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12359.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12359.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12359.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12359.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0463; -. DR EnsemblBacteria; ABX12359; ABX12359; Nmar_0463. DR KEGG; nmr:Nmar_0463; -. DR eggNOG; arCOG00273; Archaea. DR eggNOG; COG0697; LUCA. DR OMA; RRIMAIF; -. DR BioCyc; NMAR436308:GI3J-482-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR000620; EamA_dom. DR Pfam; PF00892; EamA; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 33 53 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 68 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 106 125 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 137 154 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 163 180 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 213 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 225 244 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 256 279 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 286 304 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 310 326 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 36 176 EamA. {ECO:0000259|Pfam:PF00892}. FT DOMAIN 193 326 EamA. {ECO:0000259|Pfam:PF00892}. SQ SEQUENCE 333 AA; 36802 MW; 0609E21B6B23D2D7 CRC64; MSVVSKFQPT YENLRKSKIN KISLFSKLKS KTVGVGFLFA ILAAAFSALP NVIPKSFLDA HAVDTSTIPN PLMLVFVIYV VNSLLFSPFR KSQREHEVKK TSRMTLFLLI LLGAVEASGT LTYTFGLQET SATNASILVN SETVFAILLG IMIFREKLSK QEVLPFFLIV AGSILIPVGA DIQNNEWELS DFMMGDLLIV MSGFFYCLDT FIAKKLDDSI KTRHIVHIMS CTGAIMTLGL MLFFEIPFDI SFEELSVMSF VGFLGIGVTM MFFVIALRLI GAVRTVLIYS STTIFSIVYS ILILSEGLTI LNIVSTSSVL IGLFVLRNRV GSD // ID A9A1P2_NITMS Unreviewed; 130 AA. AC A9A1P2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ABX13557.1}; GN OrderedLocusNames=Nmar_1661 {ECO:0000313|EMBL:ABX13557.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13557.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13557.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13557.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13557.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1P2; -. DR STRING; 436308.Nmar_1661; -. DR EnsemblBacteria; ABX13557; ABX13557; Nmar_1661. DR KEGG; nmr:Nmar_1661; -. DR eggNOG; arCOG01057; Archaea. DR eggNOG; COG1733; LUCA. DR OMA; GDRRTHE; -. DR BioCyc; NMAR436308:GI3J-1706-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR002577; HTH_HxlR. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01638; HxlR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS51118; HTH_HXLR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 111 HTH hxlR-type DNA-binding. FT {ECO:0000259|PROSITE:PS51118}. SQ SEQUENCE 130 AA; 15102 MW; 797D65DF7C335771 CRC64; MIDFLVDGCK CCPIDNTFQI IGKKFTLHIL RNMIILNQHH FNEFLDSIEG INPNTLSTRL KEMEKTGLIE KNIYNETPVR IEYTLTKKGK ALQPILEEMA KFSTKFCCDD VFCDAKPRTF RQVYGSTFQL // ID A9A1D0_NITMS Unreviewed; 481 AA. AC A9A1D0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; DE Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; DE EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120}; GN Name=gatA {ECO:0000256|HAMAP-Rule:MF_00120}; GN OrderedLocusNames=Nmar_0869 {ECO:0000313|EMBL:ABX12765.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12765.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12765.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12765.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) CC through the transamidation of misacylated Glu-tRNA(Gln) in CC organisms which lack glutaminyl-tRNA synthetase. The reaction CC takes place in the presence of glutamine and ATP through an CC activated gamma-phospho-Glu-tRNA(Gln). {ECO:0000256|HAMAP- CC Rule:MF_00120}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP CC + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_00120}. CC -!- SUBUNIT: Heterotrimer of A, B and C subunits. {ECO:0000256|HAMAP- CC Rule:MF_00120}. CC -!- SIMILARITY: Belongs to the amidase family. GatA subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00120}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12765.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1D0; -. DR STRING; 436308.Nmar_0869; -. DR EnsemblBacteria; ABX12765; ABX12765; Nmar_0869. DR KEGG; nmr:Nmar_0869; -. DR eggNOG; arCOG01717; Archaea. DR eggNOG; COG0154; LUCA. DR HOGENOM; HOG000116699; -. DR KO; K02433; -. DR OMA; HASPLEM; -. DR BioCyc; NMAR436308:GI3J-897-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0050567; F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.1300.10; -; 1. DR HAMAP; MF_00120; GatA; 1. DR InterPro; IPR000120; Amidase. DR InterPro; IPR020556; Amidase_CS. DR InterPro; IPR023631; Amidase_dom. DR InterPro; IPR004412; GatA. DR PANTHER; PTHR11895; PTHR11895; 1. DR Pfam; PF01425; Amidase; 1. DR SUPFAM; SSF75304; SSF75304; 1. DR TIGRFAMs; TIGR00132; gatA; 1. DR PROSITE; PS00571; AMIDASES; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00120}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00120}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00120}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00120}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12765.1}. FT DOMAIN 24 464 Amidase. {ECO:0000259|Pfam:PF01425}. FT ACT_SITE 77 77 Charge relay system. {ECO:0000256|HAMAP- FT Rule:MF_00120}. FT ACT_SITE 152 152 Charge relay system. {ECO:0000256|HAMAP- FT Rule:MF_00120}. FT ACT_SITE 176 176 Acyl-ester intermediate. FT {ECO:0000256|HAMAP-Rule:MF_00120}. SQ SEQUENCE 481 AA; 51753 MW; 0D821E31C8BAA9C1 CRC64; MNLKISALDY VQEVQNGNIS AEDFTAATLE HIHSVDEKLH AFLSVNDDAI NQAREIDKKI KSGDKVGVCF GMPISIKDNM CIKNSKTTCA SKMLENFVAP YDATVISKLK EQDAIFIGKA NMDEFAMGLT TEFSAYGPSK NPWNVDCTPG GSSGGSAVSV SAFECVASLG SDTGGSVRNP ASFCSAVGYK PTYGLISRYG LISYANSIEQ IGPVTRTVKD TAFLLNMITG LDPNDNTTVD NKSEDYLSGI DSGVEGKKIG IIKEMMAEGT DPAVVSATKD AISKLEGLGA ICEEVSLDMV KYSVAAYYTI TATEAGSNLA RYDNLRYGYD FSVEGYEFNS YIQKARKNFG PEVTRRMIIG GFVPSAGHAG KYFLKALKVK NKLTKEINDA FKKYDLLIAP TVPILPFKLG EKIDDPVALF LVDINTVTAN LTGKPAISVP FAVSNGLPIG IQLLADSMND KMLLQAAQAL EQTVKLPEVP I // ID A9A302_NITMS Unreviewed; 178 AA. AC A9A302; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 38. DE SubName: Full=SNARE associated Golgi protein {ECO:0000313|EMBL:ABX12130.1}; GN OrderedLocusNames=Nmar_0234 {ECO:0000313|EMBL:ABX12130.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12130.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12130.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12130.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12130.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0234; -. DR EnsemblBacteria; ABX12130; ABX12130; Nmar_0234. DR KEGG; nmr:Nmar_0234; -. DR eggNOG; arCOG03117; Archaea. DR eggNOG; COG0586; LUCA. DR HOGENOM; HOG000105369; -. DR OMA; TEWESIN; -. DR BioCyc; NMAR436308:GI3J-240-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032818; DedA. DR InterPro; IPR032816; SNARE_assoc. DR PANTHER; PTHR30353; PTHR30353; 1. DR Pfam; PF09335; SNARE_assoc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 56 81 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 167 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 178 AA; 19634 MW; 3EB8171C7EFA39A7 CRC64; MEPFDSFLVF ITEFLGNHLY EGIFLAALVE TIVPPIPTLA VFPTAGFLAS QQGIPLIGII PMIILGATGA TIGTSSIYFI ALKLGRAVLL RYLKHFRISE KKLVRVEDWF EKYGDKAVFL GRMVPVMREM ISVPAGLLKM KIPKFILYTF AGSCIWSTGT ILSGYYFGEA MGLATSQI // ID A9A3P0_NITMS Unreviewed; 170 AA. AC A9A3P0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13302.1}; GN OrderedLocusNames=Nmar_1406 {ECO:0000313|EMBL:ABX13302.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13302.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13302.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13302.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13302.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3P0; -. DR STRING; 436308.Nmar_1406; -. DR EnsemblBacteria; ABX13302; ABX13302; Nmar_1406. DR KEGG; nmr:Nmar_1406; -. DR eggNOG; arCOG01841; Archaea. DR eggNOG; ENOG410XZAF; LUCA. DR OMA; EGANDMQ; -. DR BioCyc; NMAR436308:GI3J-1441-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR008978; HSP20-like_chaperone. DR SUPFAM; SSF49764; SSF49764; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 51 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 57 75 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 170 AA; 19427 MW; 885864FEBBFE2646 CRC64; MVIKTKDTLY LVNLNCYCLS SYKGAYSNEQ SLNFVIPIIV ILFLGVIYIM TQRADSGFVS FFLIGAAALT MFYWVRVLKK MTKDQKPLYT QSREQEQKNW VYDLIKGDGE FVFVAEVPGP EDKVAVRLVD GMLYIRGTGG FSKEVPIEGA NDMQIFDFKY RNGVLTLRIK // ID A9A554_NITMS Unreviewed; 485 AA. AC A9A554; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 59. DE SubName: Full=Glycyl-tRNA synthetase {ECO:0000313|EMBL:ABX11963.1}; DE EC=6.1.1.14 {ECO:0000313|EMBL:ABX11963.1}; GN OrderedLocusNames=Nmar_0063 {ECO:0000313|EMBL:ABX11963.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11963.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11963.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11963.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11963.1; -; Genomic_DNA. DR ProteinModelPortal; A9A554; -. DR STRING; 436308.Nmar_0063; -. DR EnsemblBacteria; ABX11963; ABX11963; Nmar_0063. DR KEGG; nmr:Nmar_0063; -. DR eggNOG; arCOG00405; Archaea. DR eggNOG; COG0423; LUCA. DR HOGENOM; HOG000242015; -. DR KO; K01880; -. DR OMA; IFVNFHN; -. DR BioCyc; NMAR436308:GI3J-63-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004820; F:glycine-tRNA ligase activity; IEA:UniProtKB-EC. DR GO; GO:0006426; P:glycyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 3.40.50.800; -; 1. DR InterPro; IPR002314; aa-tRNA-synt_IIb. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004154; Anticodon-bd. DR InterPro; IPR027031; Gly-tRNA_synthase/POLG2. DR InterPro; IPR002315; tRNA-synt_gly. DR PANTHER; PTHR10745; PTHR10745; 1. DR Pfam; PF03129; HGTP_anticodon; 1. DR Pfam; PF00587; tRNA-synt_2b; 1. DR PRINTS; PR01043; TRNASYNTHGLY. DR SUPFAM; SSF52954; SSF52954; 1. DR TIGRFAMs; TIGR00389; glyS_dimeric; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 4: Predicted; KW Aminoacyl-tRNA synthetase {ECO:0000313|EMBL:ABX11963.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX11963.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 385 AA_TRNA_LIGASE_II. FT {ECO:0000259|PROSITE:PS50862}. SQ SEQUENCE 485 AA; 55651 MW; 40EED596D8BCD211 CRC64; MDYEAVMKLA LERGFYFPSC EVYADAQAGF WEYGPTGVGL KNKFLELWRR ELIRRDGMLE IDGSQIMSKS VFEASGHLGN FADPIIKCTK CNSTFRADRT IAELTQIEIP ESADLEEFDN AISQNNIKCP KCKGDFDKTK NFNMMFRVGI GPEEEEAYLR PETCQSIFVD FPRLYKTMRG KLPLGIAQVG KSFRNEIAPR QSLLRLREFY QAEIEVFCNP SKLDEVEKFT EVQDTVIRVQ TDSEPVEMTC KEAIESGTVP NKFVAYYLGI LTEFYEKTGI DISKSRFRKL GEKEKAFYAE VAFDFEVETT IGWLELVACN YRSDYDLSSH ANKSKEKFEI MDGDDKVLPH VFEISMGIDR SLYTILEHSL KDDKEHERIV LSLKPYLAPT HVGILSLVKK DGLKEKTDEI YLSIKRKFDA FLDHSGAIGR RYRRLDEIGA PFAVTVDHQT LEDDTVTIRK RDSMEQSRVK ISDMDSILLE SVSFP // ID A9A230_NITMS Unreviewed; 365 AA. AC A9A230; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 64. DE RecName: Full=Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; DE Short=CS {ECO:0000256|HAMAP-Rule:MF_00300}; DE EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; DE AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; GN Name=aroC {ECO:0000256|HAMAP-Rule:MF_00300}; GN OrderedLocusNames=Nmar_0547 {ECO:0000313|EMBL:ABX12443.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12443.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12443.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12443.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the anti-1,4-elimination of the C-3 phosphate CC and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate CC (EPSP) to yield chorismate, which is the branch point compound CC that serves as the starting substrate for the three terminal CC pathways of aromatic amino acid biosynthesis. This reaction CC introduces a second double bond into the aromatic ring system. CC {ECO:0000256|HAMAP-Rule:MF_00300}. CC -!- CATALYTIC ACTIVITY: 5-O-(1-carboxyvinyl)-3-phosphoshikimate = CC chorismate + phosphate. {ECO:0000256|HAMAP-Rule:MF_00300, CC ECO:0000256|RuleBase:RU000605}. CC -!- COFACTOR: CC Name=FMNH2; Xref=ChEBI:CHEBI:57618; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00300, CC ECO:0000256|RuleBase:RU000605}; CC Note=Reduced FMN (FMNH(2)). {ECO:0000256|HAMAP-Rule:MF_00300, CC ECO:0000256|RuleBase:RU000605}; CC -!- COFACTOR: CC Name=FMNH2; Xref=ChEBI:CHEBI:57618; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00300}; CC Note=Reduced FMN (FMNH(2)). {ECO:0000256|HAMAP-Rule:MF_00300}; CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 7/7. {ECO:0000256|HAMAP-Rule:MF_00300, CC ECO:0000256|RuleBase:RU000605}. CC -!- SIMILARITY: Belongs to the chorismate synthase family. CC {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12443.1; -; Genomic_DNA. DR ProteinModelPortal; A9A230; -. DR STRING; 436308.Nmar_0547; -. DR EnsemblBacteria; ABX12443; ABX12443; Nmar_0547. DR KEGG; nmr:Nmar_0547; -. DR eggNOG; arCOG04133; Archaea. DR eggNOG; COG0082; LUCA. DR HOGENOM; HOG000060335; -. DR KO; K01736; -. DR OMA; MLSINAV; -. DR BioCyc; NMAR436308:GI3J-569-MONOMER; -. DR UniPathway; UPA00053; UER00090. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004107; F:chorismate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.60.150.10; -; 1. DR HAMAP; MF_00300; Chorismate_synth; 1. DR InterPro; IPR000453; Chorismate_synth. DR InterPro; IPR020541; Chorismate_synthase_CS. DR PANTHER; PTHR21085; PTHR21085; 1. DR Pfam; PF01264; Chorismate_synt; 1. DR PIRSF; PIRSF001456; Chorismate_synth; 1. DR SUPFAM; SSF103263; SSF103263; 1. DR TIGRFAMs; TIGR00033; aroC; 1. DR PROSITE; PS00787; CHORISMATE_SYNTHASE_1; 1. DR PROSITE; PS00788; CHORISMATE_SYNTHASE_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00300, KW ECO:0000256|RuleBase:RU000605}; KW Aromatic amino acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00300, KW ECO:0000256|RuleBase:RU000605}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW FAD {ECO:0000256|HAMAP-Rule:MF_00300}; KW Flavoprotein {ECO:0000256|HAMAP-Rule:MF_00300}; KW FMN {ECO:0000256|HAMAP-Rule:MF_00300}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605, KW ECO:0000313|EMBL:ABX12443.1}; NADP {ECO:0000256|HAMAP-Rule:MF_00300}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT NP_BIND 127 129 FMN. {ECO:0000256|HAMAP-Rule:MF_00300}. FT NP_BIND 303 307 FMN. {ECO:0000256|HAMAP-Rule:MF_00300}. FT BINDING 49 49 NADP. {ECO:0000256|HAMAP-Rule:MF_00300}. FT BINDING 288 288 FMN; via amide nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_00300}. FT BINDING 330 330 FMN. {ECO:0000256|HAMAP-Rule:MF_00300}. SQ SEQUENCE 365 AA; 39535 MW; 538FFE7CA83E4065 CRC64; MLSGSSIGQR LVLTSFGESH GKSIGAVLDG CPAGLEIDEK DIQKMLDQRK PGQNLISTQR KEGDVVEIIS GVFRGHTTGA PITMVIWNSD QKSKDYENLK TKLRPGHSDY PAMMKYNQYN DHRGGGRFSG RLTATHVMGG AIARKLLKVT LGIETNSYTS QIGKIKMERQ FNEKMISSIY KNEVRCPETK TAKMMRASIL DARKKGDSLG GIIESITTNV PVGLGEPIFS SLESDLSKAM FSIPSVKGVE FGSGFKGSEM YGSENNDLYT IKRGKIVTKT NNSGGILGGI SNGMPITMRV AFKPASSISQ KQSTVDIKTK KETTLQVKGR HDPCVVPRAP PVVDSLVALT IADHALISGQ IKPVL // ID A9A1S6_NITMS Unreviewed; 431 AA. AC A9A1S6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12047.1}; GN OrderedLocusNames=Nmar_0147 {ECO:0000313|EMBL:ABX12047.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12047.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12047.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12047.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12047.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0147; -. DR EnsemblBacteria; ABX12047; ABX12047; Nmar_0147. DR KEGG; nmr:Nmar_0147; -. DR BioCyc; NMAR436308:GI3J-150-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 431 AA; 50314 MW; 1B2EC2C81AB8AD6A CRC64; MKILVPTSVL PEKKGLRFNF ISNIVDSVRK NNDVKIIWVI YQPDKILKKD TSENQILDIH DFKNAIDLVE KSNPDCIMVG QELEPIQHSL SLAAKKFNVP LISFFYNNFE ITNSNMLERK KQLLSYLRII LSSRVPSDSS HKGFLRRFRF ILFKLNFLKN TKSSLNMSDF NNFFFVFKEL FSYLTKKEID VNIFPDLFLL PDNSWNKKLL SLGIPEKKFA VVGNPILDEL YDKSKIIKQY YKNDKISILI VTDALVEHGI WSRTQMTYFF TALIKQLIKN QNFTFSLKIH PSSENKIIYE KLLNKNNVSS KIYQHENILE IIEKFDIVIS YGISTIHTEI ALLGMKMLLL DLNFNFPLGY FVKEGIECGN IIKCQNFEYM NKQIKQLVDS KLENFSTFEK ERKNLIFGFD GLSSKRAADA VQQILKNRDQ L // ID A9A4I2_NITMS Unreviewed; 311 AA. AC A9A4I2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 64. DE SubName: Full=Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABX12960.1}; GN OrderedLocusNames=Nmar_1064 {ECO:0000313|EMBL:ABX12960.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12960.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12960.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12960.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12960.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4I2; -. DR STRING; 436308.Nmar_1064; -. DR EnsemblBacteria; ABX12960; ABX12960; Nmar_1064. DR KEGG; nmr:Nmar_1064; -. DR eggNOG; arCOG00181; Archaea. DR eggNOG; COG0444; LUCA. DR KO; K02031; -. DR OMA; RDFRWND; -. DR BioCyc; NMAR436308:GI3J-1095-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0015833; P:peptide transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013563; Oligopep_ABC_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR Pfam; PF08352; oligo_HPY; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01727; oligo_HPY; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 248 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 311 AA; 34475 MW; 25B0D49CC3BE3950 CRC64; MAFLTVNGLT SRYDSSKGPV YAVEDVDFTL EDGESIGIAG ESACGKSTLG LSIIRMLAGG KTQGKIHFDE NSILDVDENT FEKTFRWKKI SMVFQGAMNS LDPVFTINDQ FLEILKQHNF DGDSKQVIAD AMNSVNLDVN VLKKYPHELS GGMKQRVVIA MALLLKPKFV IADEPTTALD VLIQAQIINL LKSLKKSGMS FMLITHDLAV LSEIADKIGI MYGGQIVEFG SSQEIYKNPK HPYTQGLLQS IPTLKGNKPT YIKGIPPSLL DAPTQCRFID RCPLAVEKCK QLPPKFKTKT GYVQCWLYED K // ID A9A494_NITMS Unreviewed; 432 AA. AC A9A494; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Porphyromonas-type peptidyl-arginine deiminase {ECO:0000313|EMBL:ABX12583.1}; GN OrderedLocusNames=Nmar_0687 {ECO:0000313|EMBL:ABX12583.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12583.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12583.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12583.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12583.1; -; Genomic_DNA. DR ProteinModelPortal; A9A494; -. DR STRING; 436308.Nmar_0687; -. DR EnsemblBacteria; ABX12583; ABX12583; Nmar_0687. DR KEGG; nmr:Nmar_0687; -. DR eggNOG; ENOG4111XJA; LUCA. DR OMA; DINIRDF; -. DR BioCyc; NMAR436308:GI3J-712-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004668; F:protein-arginine deiminase activity; IEA:InterPro. DR GO; GO:0009446; P:putrescine biosynthetic process; IEA:InterPro. DR InterPro; IPR007466; Peptidyl-Arg-deiminase_porph. DR Pfam; PF04371; PAD_porph; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 432 AA; 49512 MW; F48D6ADA1FCC4576 CRC64; MKTKLLIIFV SLGLFVSIPY AFSSEPVGIL VHPPPLKQVQ LEISLHEIQC NGDRTLIWQK DTLKPACVFH ESELIFDRKW AKMRIGMPAE EITQEKLCLW YADNLPKYLK PYCISESKVL QSDSKPLVVM VAPSINEEYY REVFHDIIDY DIQTVNTIYG KDNVVLLVDK ETKHLFEGKI PDDALLEANV ADIWIRDFGT VDTMTEVKFD FKPQYLTNED SVWINDSFED WYDQKNLSGK KSELILDGGN LVFNGKDKAI TTVRVFEDNP QYDELAIDSR LKELLQVTEI AYLPEEEGDI TGHSDGMVMW AEPDKLLVNE YEEPFRSQVL GELEASLSGV EIIEIPYVNQ NEFWRDWPSA CGYYLNSLVT DDFIYVPVYG LTEDQMVLEL IQSHTSKEVI SIDASNVCFM GGSVRCLTWT VDGLNAEKIL EH // ID A9A2Z8_NITMS Unreviewed; 133 AA. AC A9A2Z8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Thioredoxin {ECO:0000313|EMBL:ABX12126.1}; GN OrderedLocusNames=Nmar_0230 {ECO:0000313|EMBL:ABX12126.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12126.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12126.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12126.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12126.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z8; -. DR STRING; 436308.Nmar_0230; -. DR EnsemblBacteria; ABX12126; ABX12126; Nmar_0230. DR KEGG; nmr:Nmar_0230; -. DR eggNOG; arCOG01972; Archaea. DR eggNOG; COG0526; LUCA. DR HOGENOM; HOG000292977; -. DR KO; K03671; -. DR OMA; AVDYNTM; -. DR BioCyc; NMAR436308:GI3J-236-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0015035; F:protein disulfide oxidoreductase activity; IEA:InterPro. DR GO; GO:0045454; P:cell redox homeostasis; IEA:InterPro. DR GO; GO:0006662; P:glycerol ether metabolic process; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR005746; Thioredoxin. DR InterPro; IPR012336; Thioredoxin-like_fold. DR InterPro; IPR017937; Thioredoxin_CS. DR InterPro; IPR013766; Thioredoxin_domain. DR PANTHER; PTHR10438; PTHR10438; 1. DR Pfam; PF00085; Thioredoxin; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR TIGRFAMs; TIGR01068; thioredoxin; 1. DR PROSITE; PS00194; THIOREDOXIN_1; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 133 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 133 AA; 15190 MW; CB33B32B9512CD19 CRC64; MSEDPEIEKI KQRKLEEMLK QQNQPKVEPG IIDLNDSNFD QTILAENPTL VDFWAEWCGP CKMMHPVFES LSKKYPKVKF ARVNVDNNQN IAMKYAVQSI PTFIMFKSGQ IVDKMMGAVG APGINMICQK HSQ // ID A9A606_NITMS Unreviewed; 309 AA. AC A9A606; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 48. DE RecName: Full=Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; DE EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154}; DE AltName: Full=Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; DE AltName: Full=Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; GN Name=ctaB {ECO:0000256|HAMAP-Rule:MF_00154}; GN OrderedLocusNames=Nmar_1588 {ECO:0000313|EMBL:ABX13484.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13484.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13484.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13484.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Converts heme B (protoheme IX) to heme O by substitution CC of the vinyl group on carbon 2 of heme B porphyrin ring with a CC hydroxyethyl farnesyl side group. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- PATHWAY: Porphyrin-containing compound metabolism; heme O CC biosynthesis; heme O from protoheme: step 1/1. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_00154}; Multi-pass membrane protein {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- MISCELLANEOUS: Carbon 2 of the heme B porphyrin ring is defined CC according to the Fischer nomenclature. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- SIMILARITY: Belongs to the UbiA prenyltransferase family. CC Protoheme IX farnesyltransferase subfamily. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13484.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1588; -. DR EnsemblBacteria; ABX13484; ABX13484; Nmar_1588. DR KEGG; nmr:Nmar_1588; -. DR eggNOG; arCOG00479; Archaea. DR eggNOG; COG0109; LUCA. DR HOGENOM; HOG000237291; -. DR KO; K02301; -. DR OMA; PKIWYLL; -. DR BioCyc; NMAR436308:GI3J-1632-MONOMER; -. DR UniPathway; UPA00834; UER00712. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008495; F:protoheme IX farnesyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0048034; P:heme O biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00154; CyoE_CtaB; 1. DR InterPro; IPR006369; Protohaem_IX_farnesylTrfase. DR InterPro; IPR000537; UbiA_prenyltransferase. DR Pfam; PF01040; UbiA; 1. DR TIGRFAMs; TIGR01473; cyoE_ctaB; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00154}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Heme biosynthesis {ECO:0000256|HAMAP-Rule:MF_00154}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_00154}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00154, KW ECO:0000313|EMBL:ABX13484.1}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_00154}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00154}. FT TRANSMEM 21 41 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 42 62 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 100 120 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 125 145 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 154 174 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 181 201 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 227 247 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 257 277 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 285 305 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. SQ SEQUENCE 309 AA; 33793 MW; D0E6C6732AAA5FF8 CRC64; MQKQKTESRV AVYYELTKPK IWYLLVFTAF GAALTASNIY GIEIAPSTWA LMLFSVAAGS AAANTLTNYH DRDIDAIMER TKGRPLPSKR IYPAVKARNF GLALAGISLV LAFGISFTTT LEQGLWATAF IAFGLLNNIL VYSYALKRNS RTNIILGGLC GGSPPMIGWV AVTMSDLWTM GLAMAGLVFI WIPMHIWALT LHFKDDYNKV NVPMLTAVQS EKTSARAIAG STVVMVLFSI APFFITTQSG EEMVGGVYLW TAIASGILMV ALSIWVIVKP MEKASWTLFK FSSPYLAVLF IALMVDSAL // ID A9A353_NITMS Unreviewed; 151 AA. AC A9A353; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ABX12482.1}; GN OrderedLocusNames=Nmar_0586 {ECO:0000313|EMBL:ABX12482.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12482.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12482.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12482.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12482.1; -; Genomic_DNA. DR ProteinModelPortal; A9A353; -. DR STRING; 436308.Nmar_0586; -. DR EnsemblBacteria; ABX12482; ABX12482; Nmar_0586. DR KEGG; nmr:Nmar_0586; -. DR eggNOG; arCOG02305; Archaea. DR eggNOG; COG0347; LUCA. DR KO; K04751; -. DR BioCyc; NMAR436308:GI3J-609-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030234; F:enzyme regulator activity; IEA:InterPro. DR GO; GO:0006808; P:regulation of nitrogen utilization; IEA:InterPro. DR Gene3D; 3.30.70.120; -; 1. DR InterPro; IPR002187; N-reg_PII. DR InterPro; IPR011322; N-reg_PII-like_a/b. DR InterPro; IPR015867; N-reg_PII/ATP_PRibTrfase_C. DR Pfam; PF00543; P-II; 1. DR PRINTS; PR00340; PIIGLNB. DR SMART; SM00938; P-II; 1. DR SUPFAM; SSF54913; SSF54913; 1. DR PROSITE; PS51343; PII_GLNB_DOM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 151 AA; 17062 MW; D510B8AA5C9C5E0A CRC64; MKKIEAVIRR KNFPTIKSHL HIIGSYIIDK RNLEDSNIYD ESKGSRVGST GLKSIPLAKI EMVVPDKDAR KVVEMISTNS GLSATHGGKI FVSEMEEVVD METNDATQDL ELILDEKPSS VQLPKRSRLV PLQKFTLHKL QVIYEENKET L // ID A9A5F0_NITMS Unreviewed; 147 AA. AC A9A5F0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12661.1}; GN OrderedLocusNames=Nmar_0765 {ECO:0000313|EMBL:ABX12661.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12661.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12661.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12661.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12661.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5F0; -. DR STRING; 436308.Nmar_0765; -. DR EnsemblBacteria; ABX12661; ABX12661; Nmar_0765. DR KEGG; nmr:Nmar_0765; -. DR eggNOG; arCOG01759; Archaea. DR eggNOG; COG1259; LUCA. DR HOGENOM; HOG000107477; -. DR OMA; RNYRASD; -. DR BioCyc; NMAR436308:GI3J-791-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:InterPro. DR InterPro; IPR003729; Bi_nuclease_dom. DR Pfam; PF02577; DNase-RNase; 1. DR SUPFAM; SSF103256; SSF103256; 1. DR PROSITE; PS51658; BFN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 14 146 BFN. {ECO:0000259|PROSITE:PS51658}. SQ SEQUENCE 147 AA; 16603 MW; C59ECB0BBFAD34C4 CRC64; MRTMDINQAQ EPDYESVKID YVGFVDPYAV EGMVILKSDN GKEFHMRAFS GEVAKHISSF GDDTSGESAP SIYKMIEDIC EENELVLVKV KIYESGEVLR ANLYFTGKKD LVLRNYRASD ALALAAYYNI PILVRKTLLK ESMEAET // ID A9A1P0_NITMS Unreviewed; 140 AA. AC A9A1P0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=UspA domain protein {ECO:0000313|EMBL:ABX13555.1}; GN OrderedLocusNames=Nmar_1659 {ECO:0000313|EMBL:ABX13555.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13555.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13555.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13555.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13555.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1P0; -. DR STRING; 436308.Nmar_1659; -. DR EnsemblBacteria; ABX13555; ABX13555; Nmar_1659. DR KEGG; nmr:Nmar_1659; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR HOGENOM; HOG000238897; -. DR OMA; CERAGAK; -. DR BioCyc; NMAR436308:GI3J-1704-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006015; Universal_stress_UspA. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. DR PRINTS; PR01438; UNVRSLSTRESS. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 140 Usp. {ECO:0000259|Pfam:PF00582}. SQ SEQUENCE 140 AA; 14749 MW; 869187F05FAFA5C1 CRC64; MGKFQKILVP LDGSANSMRG LDKAITIANE SGAEITGYYV FHLPVTAGIK YTKAMRDKAQ DKAVKAIGPA MQKCERAGAK FKYATGGGNT ATQIVNAAKK GNFDMVVIGA RGIGNAKEAF LGSVSNSVMH KCKVPVLVVK // ID A9A342_NITMS Unreviewed; 170 AA. AC A9A342; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:ABX12170.1}; GN OrderedLocusNames=Nmar_0274 {ECO:0000313|EMBL:ABX12170.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12170.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12170.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12170.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12170.1; -; Genomic_DNA. DR ProteinModelPortal; A9A342; -. DR STRING; 436308.Nmar_0274; -. DR EnsemblBacteria; ABX12170; ABX12170; Nmar_0274. DR KEGG; nmr:Nmar_0274; -. DR eggNOG; arCOG02095; Archaea. DR eggNOG; COG5016; LUCA. DR HOGENOM; HOG000109674; -. DR KO; K18605; -. DR OMA; ESMKMQV; -. DR BioCyc; NMAR436308:GI3J-284-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000089; Biotin_lipoyl. DR InterPro; IPR011053; Single_hybrid_motif. DR Pfam; PF00364; Biotin_lipoyl; 1. DR SUPFAM; SSF51230; SSF51230; 1. DR PROSITE; PS50968; BIOTINYL_LIPOYL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 94 170 Lipoyl-binding. FT {ECO:0000259|PROSITE:PS50968}. SQ SEQUENCE 170 AA; 18466 MW; 39480EA7F5CF697A CRC64; MDYKIADVEK SFEGKITENL GNNDYVIKIN DKEHQLKILS MNAKGIEFIL DQQYHKAKYL ETATNEMNLV IDNVPVTLNM NTHFDEIVYK NSGGGGAGGA QVALKSQIPG KVVSIAVAEG DSVKKGDVVC TLESMKMQVG IKAHKDGEVK NLKIKEGATV AKGDVIADLE // ID A9A2W1_NITMS Unreviewed; 58 AA. AC A9A2W1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13638.1}; GN OrderedLocusNames=Nmar_1742 {ECO:0000313|EMBL:ABX13638.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13638.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13638.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13638.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13638.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13638; ABX13638; Nmar_1742. DR KEGG; nmr:Nmar_1742; -. DR eggNOG; arCOG07262; Archaea. DR eggNOG; ENOG41110GF; LUCA. DR OMA; HAWEVEY; -. DR BioCyc; NMAR436308:GI3J-1789-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 58 AA; 6826 MW; 3B0CAE2A7A63C9AA CRC64; MQHLYKLLEK KREIPIEIDD HFRLFGKEPW EVDYGEKCPV CDVRIDEYGF CSCGSSGD // ID A9A5B6_NITMS Unreviewed; 259 AA. AC A9A5B6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterised conserved protein UCP005026 {ECO:0000313|EMBL:ABX12315.1}; GN OrderedLocusNames=Nmar_0419 {ECO:0000313|EMBL:ABX12315.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12315.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12315.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12315.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12315.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5B6; -. DR STRING; 436308.Nmar_0419; -. DR EnsemblBacteria; ABX12315; ABX12315; Nmar_0419. DR KEGG; nmr:Nmar_0419; -. DR eggNOG; arCOG02714; Archaea. DR eggNOG; COG1478; LUCA. DR HOGENOM; HOG000223628; -. DR OMA; DSRTHAM; -. DR BioCyc; NMAR436308:GI3J-437-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002847; F420-0_gamma-glut_ligase-dom. DR Pfam; PF01996; F420_ligase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 224 F420_ligase. {ECO:0000259|Pfam:PF01996}. SQ SEQUENCE 259 AA; 28491 MW; CFC84262B789CE44 CRC64; MQLTVLPLLA DRMDEKFDVF EVFLKTLEKN ETKLEDGDVI VISTKYISNS QGRIVDIENI QISKEGLDVS KKYQLKPEIA EVVIRESDKI FGGIAGFVIT SSDNIMAPNA GIDKSNAKKG KVILYPDNPY LVAEQLRRKI FLKMLIHVGV ILVDSRLMPA RIGTSGVAIA CAGIEPVLDM RSKKDLDGNP LKVTFQAVVD NLATIANHKM GEGAESKPFA IVRNSGATLT DRKISSFEMA IDPDQCVYVR GLSNPPKNQ // ID A9A315_NITMS Unreviewed; 311 AA. AC A9A315; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Oxidoreductase domain protein {ECO:0000313|EMBL:ABX12143.1}; GN OrderedLocusNames=Nmar_0247 {ECO:0000313|EMBL:ABX12143.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12143.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12143.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12143.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12143.1; -; Genomic_DNA. DR ProteinModelPortal; A9A315; -. DR STRING; 436308.Nmar_0247; -. DR EnsemblBacteria; ABX12143; ABX12143; Nmar_0247. DR KEGG; nmr:Nmar_0247; -. DR eggNOG; arCOG01622; Archaea. DR eggNOG; COG0673; LUCA. DR HOGENOM; HOG000227447; -. DR KO; K18855; -. DR OMA; NVAHENA; -. DR BioCyc; NMAR436308:GI3J-254-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000683; Oxidoreductase_N. DR InterPro; IPR004104; OxRdtase_C. DR Pfam; PF01408; GFO_IDH_MocA; 1. DR Pfam; PF02894; GFO_IDH_MocA_C; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 117 GFO_IDH_MocA. {ECO:0000259|Pfam:PF01408}. FT DOMAIN 155 216 GFO_IDH_MocA_C. FT {ECO:0000259|Pfam:PF02894}. SQ SEQUENCE 311 AA; 35352 MW; 058FDAEABCBCC3E8 CRC64; MKIVQIGTGG WGKNHARILS ELGVLSAICD ADTQRSKEFG EKYSVNHYES LENMISSEEF DGAFVITPTS THAEIAKKLL EAKKHVFVEK PLTYKTEEGE ELARLADKNR VILTCGYIER FNPAVGIVKN LVKEKKYGDL IMLEFHRENR MPLHIKDVGI IYDTSVHDID TANWLFDEMP NVVFARSGQI KHEHEDFATI MLGYKDNKVA IITSNWITPK RIRKFHAICN DARISSDFIT QEIKVEKQEE IENIENEKQE PLLLEIQSFL NAVEGKDEHI VKAQQAVNVS KIAEAALLSS QKGVPIYLDL K // ID A9A3M5_NITMS Unreviewed; 470 AA. AC A9A3M5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 43. DE SubName: Full=Pre-mRNA processing ribonucleoprotein, binding domain protein {ECO:0000313|EMBL:ABX13287.1}; GN OrderedLocusNames=Nmar_1391 {ECO:0000313|EMBL:ABX13287.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13287.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13287.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13287.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13287.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3M5; -. DR STRING; 436308.Nmar_1391; -. DR EnsemblBacteria; ABX13287; ABX13287; Nmar_1391. DR KEGG; nmr:Nmar_1391; -. DR eggNOG; arCOG01923; Archaea. DR eggNOG; COG1498; LUCA. DR HOGENOM; HOG000227188; -. DR KO; K14564; -. DR OMA; MNAWATS; -. DR BioCyc; NMAR436308:GI3J-1426-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030529; C:intracellular ribonucleoprotein complex; IEA:UniProtKB-KW. DR GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW. DR InterPro; IPR002687; Nop_dom. DR InterPro; IPR012976; NOSIC. DR Pfam; PF01798; Nop; 1. DR SMART; SM00931; NOSIC; 1. DR SUPFAM; SSF89124; SSF89124; 1. DR PROSITE; PS51358; NOP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX13287.1}; KW Viral nucleoprotein {ECO:0000313|EMBL:ABX13287.1}; KW Virion {ECO:0000313|EMBL:ABX13287.1}. FT DOMAIN 252 366 Nop. {ECO:0000259|PROSITE:PS51358}. SQ SEQUENCE 470 AA; 52627 MW; A1B105140EA00637 CRC64; MYSVILTELG ISVFDDEKLE KSFSFSNPVK EYLSIKNKES KLNEVINYLA SIQRGVSVSD DSLLAILKKN NIDSQIMEDS ELERIQASKP QIIVDSGFAS NPQDALGKLR EFALGLSSSK VTEVSESPDL HIIQAINSLD EIDKIANALS SRLREWYGLH FPELDNIIDS INGYAQIVMA GKRESLTKQV FEDAGFPESK VEMLSLISTK SRGGDISDVN LAIVQSIAKQ ILDFHDLRKK LEEHVESEME TIAPNLSAIL GTTVGARILG RAGSLKRLAS LPASTIQVLG AEKALFRSLK TGSQPPKHGL LFQHAMVHAA PRWQRGKIAR AIAAKAVIAA RVDVYGEGLN STLLEKLNVR VDEIGKKYEN PTEKDTRRPE SFRRDGGNFR DNRRRRDDRG GRRDDRGGRR DDRGGRRDDR GGRRDDRGGR RDDRGGRRDD RGGRRDDRGG RRDDRPSSNK NKKRKQFGRR // ID A9A4C0_NITMS Unreviewed; 153 AA. AC A9A4C0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Conserved hypothetical secreted protein {ECO:0000313|EMBL:ABX12609.1}; GN OrderedLocusNames=Nmar_0713 {ECO:0000313|EMBL:ABX12609.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12609.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12609.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12609.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12609.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4C0; -. DR STRING; 436308.Nmar_0713; -. DR EnsemblBacteria; ABX12609; ABX12609; Nmar_0713. DR KEGG; nmr:Nmar_0713; -. DR eggNOG; arCOG10536; Archaea. DR eggNOG; ENOG4111TBR; LUCA. DR BioCyc; NMAR436308:GI3J-739-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.530.20; -; 1. DR InterPro; IPR019587; Polyketide_cyclase/dehydratase. DR InterPro; IPR023393; START-like_dom. DR Pfam; PF10604; Polyketide_cyc2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 153 AA; 17514 MW; D535406D571F008C CRC64; MVKSVKKSFH TGTVKKTIKI KASKDKVWRK VSNIVGLPTW LVDVKKTVYL SKKKKDVGAI RLITFADGNQ IEEHVVAWKT GEYFTYVATE GLPLRAYVAT ISIKPKSKNL VELTWQSYIN SKKMSEKQFT DFLLFMGSFY EASLENLKTL LEK // ID A9A5P5_NITMS Unreviewed; 437 AA. AC A9A5P5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13050.1}; GN OrderedLocusNames=Nmar_1154 {ECO:0000313|EMBL:ABX13050.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13050.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13050.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13050.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13050.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5P5; -. DR STRING; 436308.Nmar_1154; -. DR EnsemblBacteria; ABX13050; ABX13050; Nmar_1154. DR KEGG; nmr:Nmar_1154; -. DR eggNOG; arCOG10350; Archaea. DR eggNOG; ENOG41122U8; LUCA. DR HOGENOM; HOG000023860; -. DR BioCyc; NMAR436308:GI3J-1186-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 437 AA; 50750 MW; BC3F8FF9C0E1B11D CRC64; MKIGISLKSH NYIKNSLNNY LFAGILVFTL TVISFSLISE PVFAQMTPHM TPRQQMMMGT SPDQITCVDG KVLMMRNMGT SVCVNPDSYL RLADRGWGNW DMNMMANDPQ QMQRVMNSMM NNPQTGKLWY DVMTNDPQHL QTMTNQMMST MTNNPQMMSP MMNTMMNDPE LRQQMMDMMM QHQPMMQTIR GNGTMMNMMM GGSMNHGMMG MMNDPTTRQQ MMDMMTNNPQ MIQDMMNNGM MMNMMKGGMM MGNMMGSNMM MGNNMMNNNM MGGSMMGKGM MMNNMMGMNH GMMSTMNNTS MMGTAMNDPE LRQQMMIDMM NHPQMMYDMM NNNQMMNMMN MNPVMNSNWT MNNHHMMNNM MNQMMSNPQA MQNMHDMMLN NPWHMQGMMG NMMSSIMNQM MDDPELRQQM MNNMMMNPQM MNNMMNNQQF IQSLNNP // ID A9A2V5_NITMS Unreviewed; 236 AA. AC A9A2V5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Cob(II)yrinic acid a,c-diamide reductase {ECO:0000313|EMBL:ABX13632.1}; GN OrderedLocusNames=Nmar_1736 {ECO:0000313|EMBL:ABX13632.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13632.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13632.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13632.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13632.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2V5; -. DR STRING; 436308.Nmar_1736; -. DR EnsemblBacteria; ABX13632; ABX13632; Nmar_1736. DR KEGG; nmr:Nmar_1736; -. DR eggNOG; arCOG00288; Archaea. DR eggNOG; COG0778; LUCA. DR HOGENOM; HOG000146735; -. DR KO; K04719; -. DR OMA; QPWDFIL; -. DR BioCyc; NMAR436308:GI3J-1782-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR012825; BluB. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 1. DR SUPFAM; SSF55469; SSF55469; 1. DR TIGRFAMs; TIGR02476; BluB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 184 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. SQ SEQUENCE 236 AA; 27155 MW; C479F20989F64EB9 CRC64; MEDNFTEEEK KGFYKAIYSR RDVRSHFTSR PIEDEVLSKI LHAAHHAPSV GFSQPWNFIL IKDIETKKKI KASFEEEKNR SSQLVEEPKR SKYLSFKLEG ILESPVNLCV TYDPSKFGPF VIGRSSIPEA GLYSVCCAIQ NLWLSARTEG IGLGWVSILS NETLKENLEL PEHVVPVAYL CLGYVDDFAE KPDLETAGWL PRLDLKDVVY FEKWNDQQNE SWNSIQKMIK ENLDYA // ID A9A2P9_NITMS Unreviewed; 293 AA. AC A9A2P9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13576.1}; GN OrderedLocusNames=Nmar_1680 {ECO:0000313|EMBL:ABX13576.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13576.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13576.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13576.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13576.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1680; -. DR EnsemblBacteria; ABX13576; ABX13576; Nmar_1680. DR KEGG; nmr:Nmar_1680; -. DR eggNOG; arCOG00273; Archaea. DR eggNOG; COG0697; LUCA. DR HOGENOM; HOG000023861; -. DR OMA; IWLHLTE; -. DR BioCyc; NMAR436308:GI3J-1725-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR000620; EamA_dom. DR Pfam; PF00892; EamA; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 40 59 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 89 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 101 119 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 126 142 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 154 171 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 191 211 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 217 237 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 249 267 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 273 290 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 11 143 EamA. {ECO:0000259|Pfam:PF00892}. FT DOMAIN 158 290 EamA. {ECO:0000259|Pfam:PF00892}. SQ SEQUENCE 293 AA; 31822 MW; C056FB404ADB75C0 CRC64; MNFASINQTK FGYISAILAA LLFGSVSAVA KPSLITIHPI LLASLVYFLA SLVATPLISK KNSSISFKDK WLLLTIAFSG AVIGPMLFFT GLENSSASNS ALLLNGEIIF SVFLAILLFR EKITTIGYLA VAIVIAGVIL VTTDMEFSYS VFDVRNQGNF LIIGATLFWA LDNNLSKILS TRLDIARIVQ LKSLIGGSIL LLLVFLLQIP INIELEHLPN ILLLGIAGFG ASIFLFLQGL KRIGTVKTIM IFSTSSVFGL IFAAIFLQEQ ISHVQIIAMG IILTGIYLLY KKQ // ID A9A4T3_NITMS Unreviewed; 93 AA. AC A9A4T3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13387.1}; GN OrderedLocusNames=Nmar_1491 {ECO:0000313|EMBL:ABX13387.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13387.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13387.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13387.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13387.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1491; -. DR EnsemblBacteria; ABX13387; ABX13387; Nmar_1491. DR KEGG; nmr:Nmar_1491; -. DR eggNOG; arCOG10585; Archaea. DR eggNOG; ENOG41111HT; LUCA. DR OMA; CEDKYEA; -. DR BioCyc; NMAR436308:GI3J-1529-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 93 AA; 10351 MW; 90FA1A10DC94C029 CRC64; MNITVTCEDK YEAQKLASLI FIKDGNETFI TGILNVIKNE LVVSLKDKSA HSILLEDESN VEKFADFAQS IIDKEHKIIS TKVVGNQVEI VKG // ID A9A5W1_NITMS Unreviewed; 378 AA. AC A9A5W1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 47. DE SubName: Full=Dehydrogenase (Flavoprotein)-like protein {ECO:0000313|EMBL:ABX13116.1}; GN OrderedLocusNames=Nmar_1220 {ECO:0000313|EMBL:ABX13116.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13116.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13116.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13116.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13116.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5W1; -. DR STRING; 436308.Nmar_1220; -. DR EnsemblBacteria; ABX13116; ABX13116; Nmar_1220. DR KEGG; nmr:Nmar_1220; -. DR eggNOG; arCOG00570; Archaea. DR eggNOG; COG0644; LUCA. DR HOGENOM; HOG000106643; -. DR OMA; FFAWIIP; -. DR BioCyc; NMAR436308:GI3J-1253-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 1. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR SUPFAM; SSF51905; SSF51905; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 378 AA; 41693 MW; 54E2033A244CC44B CRC64; MYYDVVVAGG SVAGLLCARE IAADGFSVLV IEEDYEIGTP EHCGGLVSIS GLQELGVIPF RKTFDHMIES AEITAPNGKS FSINSKNQKV IEISRRELDK QIAFQAQKNG ATIKVRTSFQ EMTNTGVRTN EENIDCKIFV DARGVSSLIH KDRTGILSSA QYEIYADWIK KGKVEVIFDQ DKYPGFFAWI IPSNEGKGKI GVAGKGINVS ETMDKILAEK GKHSTIRKIF APIWVKGPIE KFVEGNTVIV GDAAGQAKPT TAGGIFTSGM GGVYAGQAIS EFLKTDEKSK LEVYQTRWTD RFGKEFEKQI FARKILERLD NNTINKLFES ITPEILKDIS EKDDFDFHTG SIVKLLGLKG SIKTAQTLIG GEFKKLLR // ID A9A2U3_NITMS Unreviewed; 354 AA. AC A9A2U3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE SubName: Full=Peptidase M24 {ECO:0000313|EMBL:ABX13620.1}; GN OrderedLocusNames=Nmar_1724 {ECO:0000313|EMBL:ABX13620.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13620.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13620.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13620.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the peptidase M24B family. CC {ECO:0000256|RuleBase:RU000590}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13620.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U3; -. DR STRING; 436308.Nmar_1724; -. DR EnsemblBacteria; ABX13620; ABX13620; Nmar_1724. DR KEGG; nmr:Nmar_1724; -. DR eggNOG; arCOG01000; Archaea. DR eggNOG; COG0006; LUCA. DR HOGENOM; HOG000008760; -. DR KO; K01271; -. DR OMA; DLTLRYK; -. DR BioCyc; NMAR436308:GI3J-1769-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR Gene3D; 3.40.350.10; -; 1. DR Gene3D; 3.90.230.10; -; 1. DR InterPro; IPR029149; Creatin/AminoP/Spt16_NTD. DR InterPro; IPR028980; Creatinase/Aminopeptidase_P_N. DR InterPro; IPR000587; Creatinase_N. DR InterPro; IPR000994; Pept_M24_structural-domain. DR InterPro; IPR001131; Peptidase_M24B_aminopep-P_CS. DR Pfam; PF01321; Creatinase_N; 1. DR Pfam; PF00557; Peptidase_M24; 1. DR SUPFAM; SSF53092; SSF53092; 1. DR SUPFAM; SSF55920; SSF55920; 1. DR PROSITE; PS00491; PROLINE_PEPTIDASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|RuleBase:RU003652}; KW Metal-binding {ECO:0000256|RuleBase:RU000590}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 124 Creatinase_N. {ECO:0000259|Pfam:PF01321}. FT DOMAIN 133 339 Peptidase_M24. FT {ECO:0000259|Pfam:PF00557}. SQ SEQUENCE 354 AA; 39970 MW; 71984DBD9DEB8AB1 CRC64; MKQRRKNLLK HAQKIGCDTL VTFEPENLFY MTGFWGEAIG LLEKNGKTTI IAPELEVGRA KDESEDCDVI TAERGTGLVT SLVKKIKKNR VCTDCQNYSI MTSLKKSIPK IKSSTEPFYN ARIIKDENEI KILKKASKII DEMFETCSKK IKVGQKESEL QTILMTYAME QQMFDTGYKS TLNPLIIAGG PNGALPHAQV TQRKFKKGDL VVTDLTLRYK GYVSDATRTF AIGNVSSQTK EAYEIVKESQ KLGLKAVKPN ANCKDVDFAC RKYIDDKNYG QYFIHSTGHG IGLEVHELPT VSYRSDTKLK ENMAITVEPG IYIENKFGIR IEDSLIVKER PIVMHKFTKD LITI // ID A9A1Y5_NITMS Unreviewed; 103 AA. AC A9A1Y5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12398.1}; GN OrderedLocusNames=Nmar_0502 {ECO:0000313|EMBL:ABX12398.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12398.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12398.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12398.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12398.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0502; -. DR EnsemblBacteria; ABX12398; ABX12398; Nmar_0502. DR KEGG; nmr:Nmar_0502; -. DR eggNOG; arCOG08761; Archaea. DR eggNOG; ENOG4110ZRX; LUCA. DR HOGENOM; HOG000108881; -. DR OMA; SNAVEDM; -. DR BioCyc; NMAR436308:GI3J-522-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 103 AA; 11815 MW; F4CFB1C3D41C2AC2 CRC64; MDFHPKDLPV SKTYDLKDEK DASNAVEDMV SIGFQGKNEG FRVLMPKESK IAKRIGYTVT TGVTHGLRQK NEIRDVRYWT YHHDDDHYAI VLISNTALTE LGF // ID A9A2T4_NITMS Unreviewed; 300 AA. AC A9A2T4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 59. DE SubName: Full=Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13611.1}; GN OrderedLocusNames=Nmar_1715 {ECO:0000313|EMBL:ABX13611.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13611.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13611.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13611.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 3 HTH asnC-type DNA-binding domains. CC {ECO:0000256|RuleBase:RU000704}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13611.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2T4; -. DR STRING; 436308.Nmar_1715; -. DR EnsemblBacteria; ABX13611; ABX13611; Nmar_1715. DR KEGG; nmr:Nmar_1715; -. DR eggNOG; arCOG01586; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000109269; -. DR OMA; LLNNCRE; -. DR BioCyc; NMAR436308:GI3J-1760-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 2. DR InterPro; IPR000485; AsnC-type_HTH_dom. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR019885; Tscrpt_reg_HTH_AsnC-type_CS. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR PRINTS; PR00033; HTHASNC. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF46785; SSF46785; 2. DR PROSITE; PS00519; HTH_ASNC_1; 1. DR PROSITE; PS50956; HTH_ASNC_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000704}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000704}; KW Transcription regulation {ECO:0000256|RuleBase:RU000704}. FT DOMAIN 1 62 HTH asnC-type DNA-binding. FT {ECO:0000259|PROSITE:PS50956}. SQ SEQUENCE 300 AA; 34233 MW; 06152980954397A5 CRC64; MDNLDMKILS RLLNNCRESD RQIGKELGIS GGAVRVRIKK MQESGVIEKF FLKIEPPILG HGVLYFVVSG ENIQEILEQV SLVGEPYIVV PCVGGVTVCG IAIQENLEQK IELAKKLMKD LRVLSIFEAE NSVFKSNLTK TDLQILEELI KEPRQKIEKI AKNTDLSTKT VTRCIEKLHG NDGFQFTLIY DPTKIEDFIP HAVLSWIDGD LKETLENLND TFSESYLQIP FIAKNQIVLF LYSDSIFKMD ELTQKVRTSK NIKSADLFIP KKISFYTNWM KKSIVESKKS PKLHLSYQTN // ID A9A501_NITMS Unreviewed; 163 AA. AC A9A501; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Heat shock protein HSP20 {ECO:0000313|EMBL:ABX11910.1}; GN OrderedLocusNames=Nmar_0010 {ECO:0000313|EMBL:ABX11910.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11910.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11910.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11910.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11910.1; -; Genomic_DNA. DR ProteinModelPortal; A9A501; -. DR STRING; 436308.Nmar_0010; -. DR EnsemblBacteria; ABX11910; ABX11910; Nmar_0010. DR KEGG; nmr:Nmar_0010; -. DR eggNOG; arCOG01833; Archaea. DR eggNOG; COG0071; LUCA. DR HOGENOM; HOG000251751; -. DR KO; K13993; -. DR OMA; YHETVEL; -. DR BioCyc; NMAR436308:GI3J-10-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.40.790; -; 2. DR InterPro; IPR002068; A-crystallin/Hsp20_dom. DR InterPro; IPR031107; HSP20. DR InterPro; IPR008978; HSP20-like_chaperone. DR PANTHER; PTHR11527; PTHR11527; 1. DR SUPFAM; SSF49764; SSF49764; 1. DR PROSITE; PS01031; HSP20; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Stress response {ECO:0000313|EMBL:ABX11910.1}. FT DOMAIN 77 150 HSP20. {ECO:0000259|PROSITE:PS01031}. SQ SEQUENCE 163 AA; 18343 MW; 37425245489B6EF2 CRC64; MFFDSEFDRI FKQMSRSFFN TDDIFEGFKG NGSESGPFYY GYTMTVGPDG KPVVKEYGNV KPGQLPASDT REPIVDTIVD EKEKVVKLIA EMPGVEKTDV KIIVDNKVVD LSAERGDKKY HVKVPVQHKV DENSAKASYK NGILQLVFKL VEEKPTGKQV EVE // ID A9A165_NITMS Unreviewed; 240 AA. AC A9A165; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12351.1}; GN OrderedLocusNames=Nmar_0455 {ECO:0000313|EMBL:ABX12351.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12351.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12351.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12351.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12351.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0455; -. DR EnsemblBacteria; ABX12351; ABX12351; Nmar_0455. DR KEGG; nmr:Nmar_0455; -. DR OMA; LNTICIT; -. DR BioCyc; NMAR436308:GI3J-474-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 58 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 240 AA; 26109 MW; 1032920C30E46341 CRC64; MYFPQMENFY KKISKVGSSP ITILVNFRFS QNIMQKRTSY TISAAVLFTV FTTAVIPFDF EKNDFEQKFY GFATIEKIDA NGNNVFTQQV HNRLVDTGET FLLEQTFQDS NSASDNTQIG AICVSDEAQT PAESDTASTF DSGNSIAENN CKEDTSVTIS SQTAQVGPLT FQAGSTNVAN GDTIRSIGIC TNRAASDADY NNCATASGIL FSVIDTSDVT LNSGETVQIT YTFDITSDTT // ID A9A2R3_NITMS Unreviewed; 258 AA. AC A9A2R3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13590.1}; GN OrderedLocusNames=Nmar_1694 {ECO:0000313|EMBL:ABX13590.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13590.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13590.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13590.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13590.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13590; ABX13590; Nmar_1694. DR KEGG; nmr:Nmar_1694; -. DR eggNOG; arCOG10599; Archaea. DR eggNOG; ENOG4110ZM7; LUCA. DR BioCyc; NMAR436308:GI3J-1739-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 258 AA; 29792 MW; 44E436C347DFF221 CRC64; MNLFHVSLIV SFTILFSVIV VDDAFGTYRE SRDTVKISQT NEYANYVHFQ PEWKSYPRNL IVDVTTTWDR EVVPGEEEQS DITKHGAKQR QNGLQYVNNK PVVAVQYDYR DCESQWFHYA KTGLDFLGYN LNFFEEESSI PNSAYSDESQ KQKLQNGFAQ FVPICTSKES TNYEYTVSVN DKTIGFDVYF VPSPVQQWYY FLFPENFEHY SNDGCFANNF QKFSGECSGV DKNSGLLIVV PDELSRPMTK ISVSLVEI // ID A9A3L5_NITMS Unreviewed; 247 AA. AC A9A3L5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12947.1}; GN OrderedLocusNames=Nmar_1051 {ECO:0000313|EMBL:ABX12947.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12947.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12947.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12947.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12947.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1051; -. DR EnsemblBacteria; ABX12947; ABX12947; Nmar_1051. DR KEGG; nmr:Nmar_1051; -. DR eggNOG; arCOG10557; Archaea. DR eggNOG; ENOG4111039; LUCA. DR BioCyc; NMAR436308:GI3J-1082-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 66 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 247 AA; 28190 MW; 20C23897A22DE67A CRC64; MSEDKVLPKD SDSDYSLPGR YEESNFTYEQ PAISYENTPR SKSKGLAIGV IAFAIISTGF FSYYFLNQNE IDSQIVQNTL NISPEQILAN QYNVGKYGSD HAHAAILVVL DGEQLNFGLP QFQLASKYIH FEDHNPYLIH KHATGVPLEM LFVSIGLKIT QECIFIEYDF SNKVNEFCAD EKKIVHVYLN GEKFSSDISQ YEIQHNDRIL ITLDETSISK HLKYLDSFEI FDVPKKPLVN SDKDILI // ID A9A3T5_NITMS Unreviewed; 102 AA. AC A9A3T5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13347.1}; GN OrderedLocusNames=Nmar_1451 {ECO:0000313|EMBL:ABX13347.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13347.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13347.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13347.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13347.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1451; -. DR EnsemblBacteria; ABX13347; ABX13347; Nmar_1451. DR KEGG; nmr:Nmar_1451; -. DR eggNOG; arCOG08729; Archaea. DR eggNOG; ENOG411117R; LUCA. DR HOGENOM; HOG000107924; -. DR OMA; SEPDEMA; -. DR BioCyc; NMAR436308:GI3J-1488-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 102 AA; 11891 MW; AEE7AF0F0D4F6600 CRC64; MAITLEISTK NYSDDAFNIK RALSHMETLT GAYNGYMFSE PKENFGWTFF QIAFKSDLHD GITTKFADML TRYRSKPEEK FAEFMRDYFA SKNCEVKVRV VA // ID A9A1R1_NITMS Unreviewed; 362 AA. AC A9A1R1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 47. DE SubName: Full=Glutamine--scyllo-inositol transaminase {ECO:0000313|EMBL:ABX12032.1}; DE EC=2.6.1.50 {ECO:0000313|EMBL:ABX12032.1}; GN OrderedLocusNames=Nmar_0132 {ECO:0000313|EMBL:ABX12032.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12032.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12032.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12032.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the DegT/DnrJ/EryC1 family. CC {ECO:0000256|RuleBase:RU004508}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12032.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R1; -. DR STRING; 436308.Nmar_0132; -. DR EnsemblBacteria; ABX12032; ABX12032; Nmar_0132. DR KEGG; nmr:Nmar_0132; -. DR eggNOG; arCOG00118; Archaea. DR eggNOG; COG0399; LUCA. DR HOGENOM; HOG000230163; -. DR OMA; CESTWAK; -. DR BioCyc; NMAR436308:GI3J-135-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0047310; F:glutamine-scyllo-inositol transaminase activity; IEA:UniProtKB-EC. DR GO; GO:0080100; F:L-glutamine:2-oxoglutarate aminotransferase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR000653; DegT/StrS_aminotransferase. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF01041; DegT_DnrJ_EryC1; 1. DR PIRSF; PIRSF000390; PLP_StrS; 1. DR SUPFAM; SSF53383; SSF53383; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX12032.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU004508}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12032.1}. SQ SEQUENCE 362 AA; 40956 MW; D8EA4E5BBD8A6D6B CRC64; MKKRIKLFDP IIGTKEEIAI NKVLKSGYWA SGSGVGNVQK FEKKFNEYIG SNSCVTVNNG TSALQLAVSL FDVKNSEIIM PSLSFVSTAH SALYNNAKPV FVDVDPKTLC IDVEKIKKHI TRKTKVIIPV HFGGFPADLD KIRKICKENQ INLVEDAAHA AGAKYKEKKI GTVSEAICFS FHPVKNLAMP NGGAITLNGK KNKVNSNLIK IKRWCGISNR HNSQYDITEL GWNAYLNEFS AVIGLEQLKK LDKMNKIRKK IAKQYSTEIN LEEKMPFSQD CSYHFFWIQV DNREKFMKKL FEKGIEIGTH YSPIHKMKFY KNKVKLPITE SVASKIVTLP IHPNLSENDV DKIIQNVNKF SN // ID A9A5Z5_NITMS Unreviewed; 540 AA. AC A9A5Z5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Thermosome {ECO:0000313|EMBL:ABX13473.1}; GN OrderedLocusNames=Nmar_1577 {ECO:0000313|EMBL:ABX13473.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13473.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13473.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13473.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the TCP-1 chaperonin family. CC {ECO:0000256|RuleBase:RU004187}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13473.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z5; -. DR SMR; A9A5Z5; 25-526. DR STRING; 436308.Nmar_1577; -. DR EnsemblBacteria; ABX13473; ABX13473; Nmar_1577. DR KEGG; nmr:Nmar_1577; -. DR eggNOG; arCOG01257; Archaea. DR eggNOG; COG0459; LUCA. DR HOGENOM; HOG000226729; -. DR OMA; EHESGHR; -. DR BioCyc; NMAR436308:GI3J-1621-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 1.10.560.10; -; 2. DR Gene3D; 3.30.260.10; -; 2. DR Gene3D; 3.50.7.10; -; 1. DR InterPro; IPR017998; Chaperone_TCP-1. DR InterPro; IPR002194; Chaperonin_TCP-1_CS. DR InterPro; IPR002423; Cpn60/TCP-1. DR InterPro; IPR027409; GroEL-like_apical_dom. DR InterPro; IPR027413; GROEL-like_equatorial. DR InterPro; IPR027410; TCP-1-like_intermed. DR InterPro; IPR012714; Thermosome_arc. DR Pfam; PF00118; Cpn60_TCP1; 1. DR PRINTS; PR00304; TCOMPLEXTCP1. DR SUPFAM; SSF52029; SSF52029; 1. DR TIGRFAMs; TIGR02339; thermosome_arch; 1. DR PROSITE; PS00750; TCP1_1; 1. DR PROSITE; PS00751; TCP1_2; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU003319}; KW Chaperone {ECO:0000256|RuleBase:RU003319}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU003319}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 540 AA; 58417 MW; E9F30E0FC202A6BA CRC64; MASIQQGPNG PVLVLKESAL QQKGKDAQQN NIAAAKLVTE LVKSSLGPRG LDKMLVDSLG DVTITNDGAT ILKEIDVQHP AAKMMVEISK TVDNEVGDGT TSSVVFGGTL LAKAEDLLKK DVHSSTIIDG YQAAAEKTLE IYSELSKKIK PDDKESLIKI ATTSMQSKLI SEDSDTLSKI VVDAILSIVT KKGEDYFVDL ENIKVEKKSG GSIQDTQIVK GIVLDKEIVH SGMPTKIDKA NIALLNSALE IEKTEMSSEI RISDPTQMQM FLEEENRMLK TMVDKLHDIG VNVLICQKGI DDIAQHYLAK NGILAVRRVK ESDMIKLSKA TGGRVISNID DLSEKDLGSA NLVHQKKVES DKWVFIEGCK HPQSVTMLIR GGSQRVIDEV DRSIHDSLMV VKDVIEKPEI VAGGGAPESF AASQLKDWAD NFDGREQLAI KKYAEALEVI PLTIAENAGM DPIDTMANLR AKQNQGRKWT GIDAKNTKIA DMLSIDVVEP IAVKEQIIKS ATEAACMILR IDDVIAVSGG PGGGGMPPMG // ID A9A486_NITMS Unreviewed; 602 AA. AC A9A486; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Sulfite reductase (Ferredoxin) {ECO:0000313|EMBL:ABX12575.1}; DE EC=1.8.7.1 {ECO:0000313|EMBL:ABX12575.1}; GN OrderedLocusNames=Nmar_0679 {ECO:0000313|EMBL:ABX12575.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12575.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12575.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12575.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12575.1; -; Genomic_DNA. DR ProteinModelPortal; A9A486; -. DR STRING; 436308.Nmar_0679; -. DR EnsemblBacteria; ABX12575; ABX12575; Nmar_0679. DR KEGG; nmr:Nmar_0679; -. DR eggNOG; arCOG02055; Archaea. DR eggNOG; COG0155; LUCA. DR HOGENOM; HOG000263628; -. DR KO; K00392; -. DR OMA; NACARIQ; -. DR BioCyc; NMAR436308:GI3J-704-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0020037; F:heme binding; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0050311; F:sulfite reductase (ferredoxin) activity; IEA:UniProtKB-EC. DR Gene3D; 3.90.480.10; -; 2. DR InterPro; IPR005117; NiRdtase/SiRdtase_haem-b_fer. DR InterPro; IPR006067; NO2/SO3_Rdtase_4Fe4S_dom. DR InterPro; IPR006066; NO2/SO3_Rdtase_FeS/sirohaem_BS. DR Pfam; PF01077; NIR_SIR; 2. DR Pfam; PF03460; NIR_SIR_ferr; 2. DR PRINTS; PR00397; SIROHAEM. DR SUPFAM; SSF55124; SSF55124; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12575.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 63 123 NIR_SIR_ferr. {ECO:0000259|Pfam:PF03460}. FT DOMAIN 133 285 NIR_SIR. {ECO:0000259|Pfam:PF01077}. FT DOMAIN 336 402 NIR_SIR_ferr. {ECO:0000259|Pfam:PF03460}. FT DOMAIN 413 547 NIR_SIR. {ECO:0000259|Pfam:PF01077}. SQ SEQUENCE 602 AA; 67564 MW; BC9D878954FE7F53 CRC64; MTVSDLKQSP ADSPKHKINW ARIEEADNFA KTVKLFRQGK YDEDSFRRFR LQHGAYGTRM TNDYAMVRIK LPAGEIYPHQ IEKLSQLSEQ YSIGSAHITT RESVQLHWVI LEDVSEILRG LADVGMTSRE ACGNSVRNVM CSPMTGVCPN EEFDSTPYAR ATAKFFLRNP MSQNLPRKFK FTFTCCEKHG MVRIVDVGLI PQIREIDGTK QKGFKIFLGG GLGNRSFVGH QLEDFTPEED LLYTSIAVVK IFDRLGDRKN LARNRMRYLV NDMGWEKFQN LVLKERAVVR ATQSVITQLD VDHTPDEIKR PIRVSDESGT GTPDGYARWL KTNTETQKQS DYRTAYITLE AGDITSSQLQ ALADIIRDFS AEGKARAGFV QNIALRYVHE DDLPRLYSKL LEIGLAKSGA LTMTAPIGCS GTTSCNLALT NSHRLAKEIQ RKFLELKLDE DDDLRDASIK ISGCPNSCGQ HGIATIGFFG GGARLGKDMY ANYQMLLGGR SDGDAMLGQI CHRVPAKRVL PVILKIIELF KEHKKPDDTL KSWIHRVATN TEDSEIKTLN DIKKAIDPLT IPPTKEEDPD FYLDYGSDTS YHTKTGKGEC AA // ID A9A1B3_NITMS Unreviewed; 128 AA. AC A9A1B3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12748.1}; GN OrderedLocusNames=Nmar_0852 {ECO:0000313|EMBL:ABX12748.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12748.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12748.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12748.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12748.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12748; ABX12748; Nmar_0852. DR KEGG; nmr:Nmar_0852; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000107232; -. DR OMA; DEARNEY; -. DR BioCyc; NMAR436308:GI3J-879-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 128 AA; 14608 MW; B3C9417635E01B07 CRC64; MAKTPADKWK DTVVKYRKQC QKILDVSKNV RYAGVINVYG RTLAGIVQPN LKPLLKSEQV KNEFFIISTL ISLRKNTAST VGKLEHVILQ HQKVTIVLVQ KNEITYYVSI NRKEKGLEKI ISSIKKIV // ID A9A4Q3_NITMS Unreviewed; 558 AA. AC A9A4Q3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Spermine synthase {ECO:0000313|EMBL:ABX13031.1}; GN OrderedLocusNames=Nmar_1135 {ECO:0000313|EMBL:ABX13031.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13031.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13031.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13031.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13031.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Q3; -. DR STRING; 436308.Nmar_1135; -. DR EnsemblBacteria; ABX13031; ABX13031; Nmar_1135. DR KEGG; nmr:Nmar_1135; -. DR eggNOG; arCOG00050; Archaea. DR eggNOG; COG0421; LUCA. DR OMA; TEFFAGM; -. DR BioCyc; NMAR436308:GI3J-1167-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00198; Spermidine_synth; 1. DR InterPro; IPR030374; PABS. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR001045; Spermi_synthase. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS51006; PABS_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 46 69 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 81 103 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 115 135 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 156 177 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 183 201 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 208 228 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 529 550 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 214 448 PABS (polyamine biosynthesis). FT {ECO:0000259|PROSITE:PS51006}. SQ SEQUENCE 558 AA; 62733 MW; 8EF29380894CD98F CRC64; MSSLSYSKLS QEMLWKLKVL TFSSGAIVMA LEIATSRILT PVFGSTIYTW GSLIGVILSG LSLGYFLGGR IADKHPKFDK ICGIVFSVGL FIVGMPFFAS HVVDFSLAIM PISQYTPLLA TFLLLMLPSV LLGFVSPYVI KLGTKSLQKV GNMSGNLYSI ATVGSIFGTF VTVFVLIPNV TVHQIIFGLG IALIASSLIG LKISPKIIAI GIVIILIVPW SSFSVSTISH NGMLIFEKET MFSHLDIIEY GDNRSLYLDG LRHSSMNMRD PLDLVIDYTE YFHLGMMFNP AAKDILFVGG GGFSGPKNFL ALYPDTKIDV IEIDSDVIDV AKTYFNLETN PRLQIFNDDA RKHLSMFDKK YDLIILDAYA TNYVPYHLMT HEFFQLLEKR LEPNGIVVSN LIGSIEGNNS PLVRSVYKTM KETFPVSYVF PTEEKPTFIQ NIMIVSSNQP YEFDRLLLLE LSKNSPVDYL SDELSRQEHF YTGIIATTDV PFLTDQYNPS EVLINPITKN PYLQDLPENQ IDEKQHLEYS MNLILGIILI IIAGMWLFYF KKRIWNFN // ID A9A1Q7_NITMS Unreviewed; 115 AA. AC A9A1Q7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12028.1}; GN OrderedLocusNames=Nmar_0128 {ECO:0000313|EMBL:ABX12028.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12028.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12028.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12028.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12028.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0128; -. DR EnsemblBacteria; ABX12028; ABX12028; Nmar_0128. DR KEGG; nmr:Nmar_0128; -. DR BioCyc; NMAR436308:GI3J-131-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 68 88 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 115 AA; 13270 MW; 93AE4A8312EE8D81 CRC64; MQSSSPRFKS LAVTAGMSFW FFIITSGVGV FTIEYMVIFV GVVITITQIF TIKISKGLDI FAIINTKIFL GILFLFVITI YGVLFRLLRI DLLRLKKQQN SYWLQIESNN VRKMF // ID A9A2H2_NITMS Unreviewed; 230 AA. AC A9A2H2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE SubName: Full=Methyltransferase type 11 {ECO:0000313|EMBL:ABX13211.1}; GN OrderedLocusNames=Nmar_1315 {ECO:0000313|EMBL:ABX13211.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13211.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13211.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13211.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13211.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H2; -. DR STRING; 436308.Nmar_1315; -. DR EnsemblBacteria; ABX13211; ABX13211; Nmar_1315. DR KEGG; nmr:Nmar_1315; -. DR eggNOG; arCOG04348; Archaea. DR eggNOG; COG2226; LUCA. DR HOGENOM; HOG000105437; -. DR KO; K03183; -. DR OMA; FEYMPFR; -. DR BioCyc; NMAR436308:GI3J-1348-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR004033; UbiE/COQ5_MeTrFase. DR InterPro; IPR023576; UbiE/COQ5_MeTrFase_CS. DR Pfam; PF01209; Ubie_methyltran; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS01184; UBIE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13211.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13211.1}. SQ SEQUENCE 230 AA; 25544 MW; 73E153BE78A95C5E CRC64; MGLGSSYWSE VIEVLREIIP VYDKVNSIIS LGKDVEHRNR GISNRVLPGN KILDAGSGFG NMSKTALKLT DGKISVTLYD PLVPMLKNTG THFEKTPDMA NGVFEHIPFR DEEFDAVLCG YSLRDAINLR IAISEIHRVL KKDGRFVIVD LGKPDSGFIR AGVAFYLRCI LPILAFSAGG KLGLKFGTLY GTFKRWPQNK KLEGLLLEKF SRVEFEKDLM GGAIMVAAYK // ID A9A422_NITMS Unreviewed; 289 AA. AC A9A422; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=5-carboxymethyl-2-hydroxymuconate Delta-isomerase {ECO:0000313|EMBL:ABX12206.1}; DE EC=5.3.3.10 {ECO:0000313|EMBL:ABX12206.1}; GN OrderedLocusNames=Nmar_0310 {ECO:0000313|EMBL:ABX12206.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12206.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12206.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12206.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12206.1; -; Genomic_DNA. DR ProteinModelPortal; A9A422; -. DR STRING; 436308.Nmar_0310; -. DR EnsemblBacteria; ABX12206; ABX12206; Nmar_0310. DR KEGG; nmr:Nmar_0310; -. DR eggNOG; arCOG00235; Archaea. DR eggNOG; COG0179; LUCA. DR HOGENOM; HOG000063755; -. DR OMA; CEIVNWA; -. DR BioCyc; NMAR436308:GI3J-324-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008704; F:5-carboxymethyl-2-hydroxymuconate delta-isomerase activity; IEA:UniProtKB-EC. DR Gene3D; 3.90.850.10; -; 1. DR InterPro; IPR011234; Fumarylacetoacetase_C-rel. DR Pfam; PF01557; FAA_hydrolase; 1. DR SUPFAM; SSF56529; SSF56529; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12206.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 79 283 FAA_hydrolase. FT {ECO:0000259|Pfam:PF01557}. SQ SEQUENCE 289 AA; 32384 MW; 4120B8ED9F9EA816 CRC64; MKIARLVHEN NETYGFVKED KVATKDEITY LTGVPIPHNV KDFLFDGWFD EIKNKIQDLP YEENLSKFKL LAPIPNPNKI ICLAFNYVDH AKEQGLTAPE DPAIVIKPRT ALNGNNANIE CPDFVTQLDY EVELALIIGK NCKNISVEEA QNVVFGYMVF NDVSARDIQF KDKQFTRGKS FDSFAPCGPW ITTADEIQEP QNLKLTTKIN GELRQNSSTS NMFIKIPEII SKISKVMTLE KGDIISTGTP AGVMLNKPNA IFLKDGDKVE MEIEGLGVLN NTIKVIKSI // ID A9A5X3_NITMS Unreviewed; 195 AA. AC A9A5X3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE RecName: Full=Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076}; DE Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076}; DE EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076}; GN Name=hisB {ECO:0000256|HAMAP-Rule:MF_00076}; GN OrderedLocusNames=Nmar_1555 {ECO:0000313|EMBL:ABX13451.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13451.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13451.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13451.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: D-erythro-1-(imidazol-4-yl)glycerol 3- CC phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H(2)O. CC {ECO:0000256|HAMAP-Rule:MF_00076}. CC -!- PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L- CC histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9. CC {ECO:0000256|HAMAP-Rule:MF_00076}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00076}. CC -!- SIMILARITY: Belongs to the imidazoleglycerol-phosphate dehydratase CC family. {ECO:0000256|HAMAP-Rule:MF_00076}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13451.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X3; -. DR STRING; 436308.Nmar_1555; -. DR EnsemblBacteria; ABX13451; ABX13451; Nmar_1555. DR KEGG; nmr:Nmar_1555; -. DR eggNOG; arCOG04398; Archaea. DR eggNOG; COG0131; LUCA. DR HOGENOM; HOG000228064; -. DR KO; K01693; -. DR OMA; HHIAESC; -. DR BioCyc; NMAR436308:GI3J-1598-MONOMER; -. DR UniPathway; UPA00031; UER00011. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004424; F:imidazoleglycerol-phosphate dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00076; HisB; 1. DR InterPro; IPR000807; ImidazoleglycerolP_deHydtase. DR InterPro; IPR020565; ImidazoleglycerP_deHydtase_CS. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR PANTHER; PTHR23133:SF2; PTHR23133:SF2; 1. DR Pfam; PF00475; IGPD; 1. DR SUPFAM; SSF54211; SSF54211; 2. DR PROSITE; PS00955; IGP_DEHYDRATASE_2; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00076}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00076}; KW Histidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00076}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000313|EMBL:ABX13451.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 195 AA; 21433 MW; 67167B72DF466AF9 CRC64; MKKRSSKIKR ETKETDVSVN VNIDGTGKTS VSTGVNFVDH LIAAFGKHAM LDLTVKAKSK DNIVHHLIED TAITIGNAID DALGNRSGVT RFSYASVPMD ESLAEASVDL VKRPFYKLTL SIKRTKIEDV SKEDLEHFFQ SLLQNLNSCI HLTVKYGDND HHKVEAAMKS LAVAFRIACS KDSKQKGIPS TKGAM // ID A9A1E8_NITMS Unreviewed; 679 AA. AC A9A1E8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=V-type H(+)-translocating pyrophosphatase {ECO:0000313|EMBL:ABX13127.1}; DE EC=3.6.1.1 {ECO:0000313|EMBL:ABX13127.1}; GN OrderedLocusNames=Nmar_1231 {ECO:0000313|EMBL:ABX13127.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13127.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13127.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13127.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13127.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1231; -. DR EnsemblBacteria; ABX13127; ABX13127; Nmar_1231. DR KEGG; nmr:Nmar_1231; -. DR eggNOG; arCOG04949; Archaea. DR eggNOG; COG3808; LUCA. DR HOGENOM; HOG000007098; -. DR KO; K15987; -. DR OMA; NVMPALY; -. DR BioCyc; NMAR436308:GI3J-1264-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0009678; F:hydrogen-translocating pyrophosphatase activity; IEA:InterPro. DR GO; GO:0004427; F:inorganic diphosphatase activity; IEA:UniProtKB-EC. DR GO; GO:0015992; P:proton transport; IEA:InterPro. DR HAMAP; MF_01129; PPase_energized_pump; 1. DR InterPro; IPR004131; PPase-energised_H-pump. DR Pfam; PF03030; H_PPase; 1. DR PIRSF; PIRSF001265; H+-PPase; 1. DR TIGRFAMs; TIGR01104; V_PPase; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13127.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 57 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 79 100 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 121 147 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 153 174 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 222 239 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 245 268 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 280 301 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 307 324 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 368 388 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 394 416 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 462 480 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 500 520 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 574 607 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 658 678 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 679 AA; 69920 MW; 032D073752D097F4 CRC64; MEISEILPFI AGIASFLVAG GLVAWISKQP AGTKEMMDIS NAVKVGAAAF LKREMKIIIP VAIALTVIIG AFLTPSNGLA FAVGAALSAV AGIISLKITV KAAVRAAHLS NDGLGKTFAM AFRGGATVGL AVPAMALMAI AGLYVIYPDP ITIAGVGIGA SLIALFIRIG GGIFTKAADM GADLVGKVEA NIPEDDPRNP ATIADNVGDN VGDAAGMGSD VYESYIVTIL AALLIAALIG APNYFLYPIL VGSSGMIASI IGVVIVGSKG VTDVMKPLNR SFYVSAAIAI ALNYVFITQF IEQNQAAYAL FGTTVIGVIL VPVIQKITDR YTSYQHGPVN EIADSAKWGY ASLTLMGIIK GMQSTGPFMI ALVVAIIISY SIAAAAAPEG ADPVLYGIFG TSLTAMAMLS LAGIVLSIDA FGPIADNAGG IVEMTGMGEE NRKVTDEIDA VGNTTKAVTK GFAIASAALA ALAMIQAFQF EAAHIFEGVL DLDYSLTNPA IIVGLLVGGL IPFIITGQLI NGVSRAAGKM VDEVRRQFKS DPEILTGKSK PDYAKCVDIA TVASIRELWK PAIVAIIAPI ILGIILGPTA VAGLLMGSVV TGILLAYHLA NTGGAWDNAK KLVEMKGEKG SEVHKVAVVG DIIGDPYKDT AGPALNTVIK LLNTIAIVFV SAFVAILAI // ID A9A5B3_NITMS Unreviewed; 177 AA. AC A9A5B3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12312.1}; GN OrderedLocusNames=Nmar_0416 {ECO:0000313|EMBL:ABX12312.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12312.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12312.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12312.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12312.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12312; ABX12312; Nmar_0416. DR KEGG; nmr:Nmar_0416; -. DR eggNOG; arCOG08663; Archaea. DR eggNOG; ENOG41111SH; LUCA. DR HOGENOM; HOG000105826; -. DR OMA; YGISPWE; -. DR BioCyc; NMAR436308:GI3J-434-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 177 AA; 20915 MW; FB50A0EF0FD52B79 CRC64; MADSLTTTLR YYGISPWEIE VLYGFLNSHF TINQEEIEAD DEDFVSFLDV NIPLTFNDAF FEWFDFKRWE KVKAVFKEMK RRRGSGNAIK IVINFSGIPK IGFTIDTQDK QWFDNAIEKI DSVLELLPYH LDPEKIPAEI TEVYYKFDSK TVRWRLNTAT SPQKQFSFKG DVWKEIN // ID A9A1A3_NITMS Unreviewed; 267 AA. AC A9A1A3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Uroporphyrinogen III synthase HEM4 {ECO:0000313|EMBL:ABX12389.1}; GN OrderedLocusNames=Nmar_0493 {ECO:0000313|EMBL:ABX12389.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12389.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12389.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12389.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12389.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1A3; -. DR STRING; 436308.Nmar_0493; -. DR EnsemblBacteria; ABX12389; ABX12389; Nmar_0493. DR KEGG; nmr:Nmar_0493; -. DR eggNOG; arCOG02048; Archaea. DR eggNOG; COG1587; LUCA. DR HOGENOM; HOG000108701; -. DR KO; K01719; -. DR OMA; VEHTIAG; -. DR BioCyc; NMAR436308:GI3J-513-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004852; F:uroporphyrinogen-III synthase activity; IEA:InterPro. DR GO; GO:0033014; P:tetrapyrrole biosynthetic process; IEA:InterPro. DR InterPro; IPR003754; 4pyrrol_synth_uPrphyn_synth. DR Pfam; PF02602; HEM4; 1. DR SUPFAM; SSF69618; SSF69618; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 257 HEM4. {ECO:0000259|Pfam:PF02602}. SQ SEQUENCE 267 AA; 29085 MW; 7CA31BD846395D79 CRC64; MLDGKTIAIT RSSDDASEFI SLAEQTNATP IALPTIELVS KGEKIVDEFL DSVETYNPDY SVFMSSKAVK LLFDTAKESG KLETLQLAIA NTIVISVGPK TTIALETQGI KVNHQPEKTF SSVGVGELFT QLNAVGKKVI VPRSGASTPF LKELLNKIGI DVSEIHLYDV CAFRDTSQWN GFRELFSQNK VDGVVFTSAS SVRGFFEIMT KDYDENSLLD NLAKLSVVSI GPFTSDELKK FKVKNTVAEV HTVAGAFEAM KNTLTIA // ID A9A497_NITMS Unreviewed; 293 AA. AC A9A497; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 46. DE SubName: Full=tRNA methyltransferase complex GCD14 subunit {ECO:0000313|EMBL:ABX12586.1}; GN OrderedLocusNames=Nmar_0690 {ECO:0000313|EMBL:ABX12586.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12586.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12586.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12586.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12586.1; -; Genomic_DNA. DR ProteinModelPortal; A9A497; -. DR STRING; 436308.Nmar_0690; -. DR EnsemblBacteria; ABX12586; ABX12586; Nmar_0690. DR KEGG; nmr:Nmar_0690; -. DR eggNOG; arCOG00978; Archaea. DR eggNOG; COG2519; LUCA. DR HOGENOM; HOG000245274; -. DR KO; K07442; -. DR OMA; RPDHRMI; -. DR BioCyc; NMAR436308:GI3J-715-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031515; C:tRNA (m1A) methyltransferase complex; IEA:InterPro. DR GO; GO:0016429; F:tRNA (adenine-N1-)-methyltransferase activity; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR InterPro; IPR014816; tRNA_MeTrfase_Gcd14. DR Pfam; PF08704; GCD14; 1. DR PIRSF; PIRSF017269; GCD14; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS51620; SAM_TRM61; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12586.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|PIRSR:PIRSR017269-1}; KW Transferase {ECO:0000313|EMBL:ABX12586.1}. FT REGION 107 110 S-adenosyl-L-methionine binding. FT {ECO:0000256|PIRSR:PIRSR017269-1}. FT BINDING 128 128 S-adenosyl-L-methionine. FT {ECO:0000256|PIRSR:PIRSR017269-1}. FT BINDING 156 156 S-adenosyl-L-methionine. FT {ECO:0000256|PIRSR:PIRSR017269-1}. FT BINDING 174 174 S-adenosyl-L-methionine. FT {ECO:0000256|PIRSR:PIRSR017269-1}. SQ SEQUENCE 293 AA; 32984 MW; D9213C31EAD17D6B CRC64; MDKIKQNSPV LFYFNHSKKW LVKISKKDSL HTHIGVIKHS DAIGKEYGSR LITNKDKYVY LLKPTMYDYV MKIQHGTQIV YPKDIGYIIA RAGIESGQKI LEIGTGSGSL TSCVASIVKP RGHVYTFDVD ENFMKIAEKN IEKAGVSKYV TQHNQDLKTA KKMPLKDMDV ALIDLGDPWI VIPQVREMLK GSGSIFAICP TMNQLEKLTM TLVENEFTDI ESTEHILRTI EAREGKTRHS FQGIGHTTYL CFARKAFFGR DAKKSSSKTS KPTSKTSKKT VKKAAKKTSK KTS // ID A9A153_NITMS Unreviewed; 255 AA. AC A9A153; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Transcriptional regulator, TrmB {ECO:0000313|EMBL:ABX12014.1}; GN OrderedLocusNames=Nmar_0114 {ECO:0000313|EMBL:ABX12014.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12014.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12014.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12014.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12014.1; -; Genomic_DNA. DR ProteinModelPortal; A9A153; -. DR STRING; 436308.Nmar_0114; -. DR EnsemblBacteria; ABX12014; ABX12014; Nmar_0114. DR KEGG; nmr:Nmar_0114; -. DR eggNOG; arCOG02038; Archaea. DR eggNOG; COG1378; LUCA. DR HOGENOM; HOG000107736; -. DR OMA; ISYTKIY; -. DR BioCyc; NMAR436308:GI3J-117-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR021586; Tscrpt_reg_TrmB_C. DR InterPro; IPR002831; Tscrpt_reg_TrmB_N. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF11495; Regulator_TrmB; 1. DR Pfam; PF01978; TrmB; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 77 TrmB. {ECO:0000259|Pfam:PF01978}. FT DOMAIN 118 246 Regulator_TrmB. FT {ECO:0000259|Pfam:PF11495}. SQ SEQUENCE 255 AA; 28035 MW; C590791FF58CED6B CRC64; MSISDKTRKA LEKIGLTSYE IRTFSALLKS GELTASELSQ KSGVPYSKIY EVLGTLEEKG WIGTDDSRPT KYFAKSPSTG LETTKQKMEN DFSENQSVIL NELVPLYEKS GTSEKPDIWV LSGAINIAAK ILEMVETCRN EVMIALPEAG EELVRQALPK LRSLHDKGVE ITILTSDKMD KESIKAIKRV ATVKIKKGLF GGGIISDKKY VVILLGPAVA AENSSDVVAI WADHAGLAGF ARQYFEYLLK DSKKV // ID A9A292_NITMS Unreviewed; 133 AA. AC A9A292; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12803.1}; GN OrderedLocusNames=Nmar_0907 {ECO:0000313|EMBL:ABX12803.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12803.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12803.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12803.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12803.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0907; -. DR EnsemblBacteria; ABX12803; ABX12803; Nmar_0907. DR KEGG; nmr:Nmar_0907; -. DR BioCyc; NMAR436308:GI3J-935-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 133 AA; 15525 MW; 1C3E35591975DB7A CRC64; MPLDKMSNTE DFIPTHKSVI LHLQGKPVAC VIDTQNNYDA INDNPSLRAS LTGFLNKDEE FGLLMGFQLK IKTDEEFFQF TVYPNDEFIE TVIFDERIFI INDKMDPLFS LKLNTDQFVK TKSEFDKFQK MIK // ID A9A3D4_NITMS Unreviewed; 241 AA. AC A9A3D4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=F420-dependent oxidoreductase, putative {ECO:0000313|EMBL:ABX12563.1}; GN OrderedLocusNames=Nmar_0667 {ECO:0000313|EMBL:ABX12563.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12563.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12563.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12563.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12563.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3D4; -. DR STRING; 436308.Nmar_0667; -. DR EnsemblBacteria; ABX12563; ABX12563; Nmar_0667. DR KEGG; nmr:Nmar_0667; -. DR eggNOG; arCOG02714; Archaea. DR eggNOG; COG1478; LUCA. DR HOGENOM; HOG000223628; -. DR KO; K12234; -. DR OMA; GTICANA; -. DR BioCyc; NMAR436308:GI3J-692-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043773; F:coenzyme F420-0 gamma-glutamyl ligase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0051188; P:cofactor biosynthetic process; IEA:InterPro. DR InterPro; IPR008225; F420-0_g-glutamyl_ligase. DR InterPro; IPR002847; F420-0_gamma-glut_ligase-dom. DR Pfam; PF01996; F420_ligase; 1. DR TIGRFAMs; TIGR01916; F420_cofE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 218 F420_ligase. {ECO:0000259|Pfam:PF01996}. SQ SEQUENCE 241 AA; 26495 MW; C060D59B360E0B25 CRC64; MEIIPIHIEK EIEPSDDLSE LIISSNQIQD GDVIVIAQKI ISKQERRLVE LSTVKPSLLS EGISSQYQKD PRITELILSE SKRIIRMKNG ILIVETNDGT ICANAGIDES NVKDGFATLL PLDSDKSAKN IREKIFKHTN KDVAVIISDT FGRPFRLGQT NCAIGISGLS PIIDYEGTQD TFGKTLRVTA IAIADELSAA SELVMGKTLK TPVAIIRDCS FPKGEQGISE LIRAEDEDLF R // ID A9A1I4_NITMS Unreviewed; 832 AA. AC A9A1I4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 63. DE SubName: Full=Methionine synthase {ECO:0000313|EMBL:ABX13163.1}; DE EC=2.1.1.13 {ECO:0000313|EMBL:ABX13163.1}; GN OrderedLocusNames=Nmar_1267 {ECO:0000313|EMBL:ABX13163.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13163.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13163.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13163.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Note=Cobalamin. {ECO:0000256|PIRSR:PIRSR000381-2}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13163.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I4; -. DR STRING; 436308.Nmar_1267; -. DR EnsemblBacteria; ABX13163; ABX13163; Nmar_1267. DR KEGG; nmr:Nmar_1267; -. DR eggNOG; arCOG01978; Archaea. DR eggNOG; arCOG02029; Archaea. DR eggNOG; COG1410; LUCA. DR HOGENOM; HOG000251408; -. DR KO; K00548; -. DR OMA; FRIVNRL; -. DR BioCyc; NMAR436308:GI3J-1300-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0031419; F:cobalamin binding; IEA:UniProtKB-KW. DR GO; GO:0008705; F:methionine synthase activity; IEA:UniProtKB-EC. DR GO; GO:0008898; F:S-adenosylmethionine-homocysteine S-methyltransferase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0042558; P:pteridine-containing compound metabolic process; IEA:InterPro. DR Gene3D; 1.10.1240.10; -; 1. DR Gene3D; 3.10.196.10; -; 1. DR Gene3D; 3.20.20.20; -; 1. DR Gene3D; 3.40.50.280; -; 1. DR InterPro; IPR003759; Cbl-bd_cap. DR InterPro; IPR006158; Cobalamin-bd. DR InterPro; IPR011005; Dihydropteroate_synth-like. DR InterPro; IPR011822; MetH. DR InterPro; IPR000489; Pterin-binding_dom. DR InterPro; IPR004223; VitB12-dep_Met_synth_activ_dom. DR Pfam; PF02310; B12-binding; 1. DR Pfam; PF02607; B12-binding_2; 1. DR Pfam; PF02965; Met_synt_B12; 1. DR Pfam; PF00809; Pterin_bind; 1. DR PIRSF; PIRSF000381; MetH; 1. DR SMART; SM01018; B12-binding_2; 1. DR SUPFAM; SSF47644; SSF47644; 1. DR SUPFAM; SSF51717; SSF51717; 1. DR SUPFAM; SSF52242; SSF52242; 1. DR SUPFAM; SSF56507; SSF56507; 1. DR PROSITE; PS50974; ADOMET_ACTIVATION; 1. DR PROSITE; PS51332; B12_BINDING; 1. DR PROSITE; PS51337; B12_BINDING_NTER; 1. DR PROSITE; PS50972; PTERIN_BINDING; 1. PE 4: Predicted; KW Cobalamin {ECO:0000256|PIRSR:PIRSR000381-2}; KW Cobalt {ECO:0000256|PIRSR:PIRSR000381-2}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR000381-1}; KW Methyltransferase {ECO:0000313|EMBL:ABX13163.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|PIRSR:PIRSR000381-2}; KW Transferase {ECO:0000313|EMBL:ABX13163.1}. FT DOMAIN 21 277 Pterin-binding. FT {ECO:0000259|PROSITE:PS50972}. FT DOMAIN 308 426 B12-binding N-terminal. FT {ECO:0000259|PROSITE:PS51337}. FT DOMAIN 426 563 B12-binding. FT {ECO:0000259|PROSITE:PS51332}. FT DOMAIN 570 832 AdoMet activation. FT {ECO:0000259|PROSITE:PS50974}. FT METAL 439 439 Cobalt (cobalamin axial ligand). FT {ECO:0000256|PIRSR:PIRSR000381-1}. SQ SEQUENCE 832 AA; 92281 MW; C29FC04677E38336 CRC64; MTTPRVSSAL KAVDLKQIPA PLIIGERINT QGSRKAKQLV LADDYDGLVD LGRTQVEDGA HCLDVCVATT ERADEKDFML NLVKRLSLEV DAPLVIDSTD PDVIDASVKQ IPGRPIINSI NLEGDGSRFE KLAPIMAKYG LPAIALCIGP NGMAKTPQQK LETAELLFET GKKYGLKIEQ FIFDVLTFTL ATGEDEFLEA GKNTLEGIRL VKEKYPESFT TLGLSNISFG LVPYARKILN SVFLHHAIKS GLDTAIVNAK EIIPYGEIDE KERKLAEDLI FNTHPNALSE LITYFENAGP QTSTASKKVD VDPSWPAGKK ANFRIVNRLK DGIENDVVSA IADKVGKNEI LKDTDGVLSL DAPPEETHDG AIRTLNEDLL PAMKEVGDKF GAGELILPFV LKSAECMKAA VGELEKYLVK EEGSSKGKLV LGTVYGDVHD IGKNLVKTIF QNNGYTVYDL GKQVPLQKFL EKIDEVNPDA IGLSALLVST SKQMQFFVEH ARKNKMNIPI LCGGAAINSN YINRIAKEDG IYEPGVFYCN TMFEGLKTMD TLISDEKPKL LAEWKEKLEN WKEKSTATVD PASLPKSDIK PVQAPTPTTI GEPIRLKGEQ IKMDEVWQLI DKKSLFKLSW GLRGKAGSES EADHEQLLSQ WKIRIIREKL FEPEVVYGYF KCHNKDGKLS VENPRGDDVS FDFPRSTKPE HLCLTDYFGD DDVVAFQAVT VGNKVADIIE QWNKEDKYTD AYYLHGLAVE VAEALAEWIN RKIKSELNLD AGGLRYSWGF PSCPDVLQHQ LVWKLLEPQK SGMELTESGQ IIPEQSTAAI VVHHPKAQYF VL // ID A9A4G3_NITMS Unreviewed; 125 AA. AC A9A4G3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12652.1}; GN OrderedLocusNames=Nmar_0756 {ECO:0000313|EMBL:ABX12652.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12652.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12652.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12652.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12652.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0756; -. DR EnsemblBacteria; ABX12652; ABX12652; Nmar_0756. DR KEGG; nmr:Nmar_0756; -. DR eggNOG; arCOG05565; Archaea. DR eggNOG; ENOG4111ZU8; LUCA. DR HOGENOM; HOG000107008; -. DR OMA; WIRYLAP; -. DR BioCyc; NMAR436308:GI3J-782-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 125 AA; 14606 MW; 19EDB9106A0DCD79 CRC64; MAAKKIDLLD IVQKIINLDS KMRFAAIIDP KGNIREAIMK TGKTNLKSQK EEEHFCKQVA QRRAMRKEFD RSLGKVRYVH VEREKVSQMV VYAKRNIIYF TMEPEMPINT KIRLITKIKK LTAGL // ID A9A3N3_NITMS Unreviewed; 722 AA. AC A9A3N3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13295.1}; GN OrderedLocusNames=Nmar_1399 {ECO:0000313|EMBL:ABX13295.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13295.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13295.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13295.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13295.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3N3; -. DR STRING; 436308.Nmar_1399; -. DR EnsemblBacteria; ABX13295; ABX13295; Nmar_1399. DR KEGG; nmr:Nmar_1399; -. DR eggNOG; arCOG08705; Archaea. DR eggNOG; ENOG41111NK; LUCA. DR HOGENOM; HOG000107097; -. DR OMA; PGINWKA; -. DR BioCyc; NMAR436308:GI3J-1434-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 722 AA; 78318 MW; 12B27CB466ECF547 CRC64; MTSLNIMNKS SMRGIFLSIV LLFSITLVSI PDNVYGQEIN ANSIGLEETV IIEFTNELDK EINTFRIWLG SGFNFESFKT EKGWLGEKTP QGVIIFTTSE PIKKGETVKF GIKTDTKNPG INWKAIDTKS EQQGMGKVLP EELPKVVENT EIKPVENIED KPVETGILSD SVFRIIPEKP NIGSSIRVTG DNFGSSEEFD FYIDNSKIGS FVTDENGHFM TTMQIPENQN ADRVDFKVKD SEGGEKKYSV RIEEIDNRIA EENVKLTIKG IPNVIHRGDF LEISGTGDPN SAVTAEITSP DGEIINARTA EIDAKGNWEL AEPIVVALDT PFGKYSATIT DGRESILKSW TVESDKIIIV APNKLKFEPG EVMIFNGTAL PNKPIEFILE DPQGKELFSD IIQIDESGHV EFEYATVQSS PKGTYTLIAT QEKDTEFIFA GLGQLPTTPV NLEFDELNYN AGDTAIISIT GKSSEIASLL IIDPSDKPKG DTVSIQLAPD GTAVYELDLT GFASGVYSAV VSKGTAQSTE IFTVGLQTGS GEIKINTTKL DYSPGDSILI LGDTGENVLL TISLADPDGN IVKEKDTFSD KNGKISESTF RIPSDGKGGM WSINAKSGSN FHTIEIDVIA TVTEGVQISV EEGINVPGVG DSMQIKIVGV SQTVQIEIIA ADGTVIDSLE FVASSGGEIN QPWIIPKDTA PGTYTIKVED AFTSAEDTFE IS // ID A9A4I9_NITMS Unreviewed; 161 AA. AC A9A4I9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=Acetolactate synthase, small subunit {ECO:0000313|EMBL:ABX12967.1}; GN OrderedLocusNames=Nmar_1071 {ECO:0000313|EMBL:ABX12967.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12967.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12967.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12967.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12967.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4I9; -. DR STRING; 436308.Nmar_1071; -. DR EnsemblBacteria; ABX12967; ABX12967; Nmar_1071. DR KEGG; nmr:Nmar_1071; -. DR eggNOG; arCOG04445; Archaea. DR eggNOG; COG0440; LUCA. DR HOGENOM; HOG000046747; -. DR KO; K01653; -. DR OMA; PYGIREI; -. DR BioCyc; NMAR436308:GI3J-1102-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003984; F:acetolactate synthase activity; IEA:InterPro. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0009082; P:branched-chain amino acid biosynthetic process; IEA:InterPro. DR InterPro; IPR004789; Acetalactate_synth_ssu. DR InterPro; IPR019455; Acetolactate_synth_ssu_C. DR InterPro; IPR002912; ACT_dom. DR Pfam; PF01842; ACT; 1. DR Pfam; PF10369; ALS_ss_C; 1. DR TIGRFAMs; TIGR00119; acolac_sm; 1. DR PROSITE; PS51671; ACT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 78 ACT. {ECO:0000259|PROSITE:PS51671}. SQ SEQUENCE 161 AA; 18113 MW; 02CFFC6A4A25EDE8 CRC64; MWAILSILVE NKPGILFKVT HLFRARDFNI DSISVGVTEN PEYSKMTITT FGDEKQIDQI VKQLDKMIDT VRVERLDEHK TVYRELSIFK IKLSNANDSM EVNKLANAYG GKVHDVKKDS IMVELTATPD QIKAFEELAK PFGILDVART GVAALQRSGA E // ID A9A2V8_NITMS Unreviewed; 76 AA. AC A9A2V8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13635.1}; GN OrderedLocusNames=Nmar_1739 {ECO:0000313|EMBL:ABX13635.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13635.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13635.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13635.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13635.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1739; -. DR EnsemblBacteria; ABX13635; ABX13635; Nmar_1739. DR KEGG; nmr:Nmar_1739; -. DR eggNOG; arCOG08769; Archaea. DR eggNOG; ENOG41110B5; LUCA. DR HOGENOM; HOG000109070; -. DR OMA; SDMPKAT; -. DR BioCyc; NMAR436308:GI3J-1786-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 76 AA; 8676 MW; ED44D807954018F4 CRC64; MNRTNQSTII KEAINSYLDK GVTDKQDIYT KVVDELGVPR PTVRRVARDL RTELLQKIQI LQSDMPKATT ASEEDE // ID A9A2R6_NITMS Unreviewed; 258 AA. AC A9A2R6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; GN OrderedLocusNames=Nmar_1697 {ECO:0000313|EMBL:ABX13593.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13593.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13593.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13593.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 2 rhodanese domains. CC {ECO:0000256|RuleBase:RU000507}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13593.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2R6; -. DR STRING; 436308.Nmar_1697; -. DR EnsemblBacteria; ABX13593; ABX13593; Nmar_1697. DR KEGG; nmr:Nmar_1697; -. DR eggNOG; arCOG02019; Archaea. DR eggNOG; COG2897; LUCA. DR HOGENOM; HOG000157236; -. DR KO; K01011; -. DR OMA; NYFGSWN; -. DR BioCyc; NMAR436308:GI3J-1742-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004792; F:thiosulfate sulfurtransferase activity; IEA:InterPro. DR Gene3D; 3.40.250.10; -; 2. DR InterPro; IPR001763; Rhodanese-like_dom. DR InterPro; IPR001307; Thiosulphate_STrfase_CS. DR Pfam; PF00581; Rhodanese; 2. DR SMART; SM00450; RHOD; 2. DR SUPFAM; SSF52821; SSF52821; 2. DR PROSITE; PS00380; RHODANESE_1; 1. DR PROSITE; PS50206; RHODANESE_3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU000507}. FT DOMAIN 13 121 Rhodanese. {ECO:0000259|PROSITE:PS50206}. FT DOMAIN 149 257 Rhodanese. {ECO:0000259|PROSITE:PS50206}. SQ SEQUENCE 258 AA; 28997 MW; D572EEE6BEEF9143 CRC64; MLISTDELNS ILGDPNLILA DTRSFKEYSE GHIPGAVHLD LFAFHWIDTT KQGIDNFNNQ SKSLLSFLGV APEKKVIFYD SISGMLAARG VWMLMYFSHQ NVMMLDGGIT KWQKENLAVE TKPNGFKPSD FSGKINSEII SGFEYIRDNL DNVKILDARS PGEYDGSTVR AAQSGHIPNA INIDWSQNLK EDGTFKSDEE LSKMYDFPKD TEIVTYCQGA YRAANSFLVL KKLGFSNIKV YLGSWGEWGN RLDLPVEK // ID A9A4A8_NITMS Unreviewed; 638 AA. AC A9A4A8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Acetate--CoA ligase {ECO:0000313|EMBL:ABX12597.1}; GN OrderedLocusNames=Nmar_0701 {ECO:0000313|EMBL:ABX12597.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12597.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12597.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12597.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12597.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4A8; -. DR STRING; 436308.Nmar_0701; -. DR EnsemblBacteria; ABX12597; ABX12597; Nmar_0701. DR KEGG; nmr:Nmar_0701; -. DR eggNOG; arCOG01529; Archaea. DR eggNOG; COG0365; LUCA. DR HOGENOM; HOG000229981; -. DR KO; K01895; -. DR OMA; PMASEDR; -. DR BioCyc; NMAR436308:GI3J-726-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003987; F:acetate-CoA ligase activity; IEA:InterPro. DR GO; GO:0016208; F:AMP binding; IEA:InterPro. DR GO; GO:0019427; P:acetyl-CoA biosynthetic process from acetate; IEA:InterPro. DR InterPro; IPR011904; Ac_CoA_lig. DR InterPro; IPR032387; ACAS_N. DR InterPro; IPR025110; AMP-bd_C. DR InterPro; IPR020845; AMP-binding_CS. DR InterPro; IPR000873; AMP-dep_Synth/Lig. DR Pfam; PF16177; ACAS_N; 1. DR Pfam; PF00501; AMP-binding; 1. DR Pfam; PF13193; AMP-binding_C; 1. DR TIGRFAMs; TIGR02188; Ac_CoA_lig_AcsA; 1. DR PROSITE; PS00455; AMP_BINDING; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX12597.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 66 ACAS_N. {ECO:0000259|Pfam:PF16177}. FT DOMAIN 72 505 AMP-binding. {ECO:0000259|Pfam:PF00501}. FT DOMAIN 514 593 AMP-binding_C. FT {ECO:0000259|Pfam:PF13193}. SQ SEQUENCE 638 AA; 71146 MW; EC4239EF8A2D5E4E CRC64; MSDTYNIGLG NNDTDTRIKA DSDFVSFWND QAKNLTWFSP WNETLDWQPP FAKWFVGGTI NASHNALDVH QDSKSEKPAI LWEGENGDSR ILTYGQILTE VQKFSNILKS LGVEKGDRVT LYLPMIPELP IAMLACARIG ATHTVIFSGF SATSIRDRVD DSKSKVIVTA DGGYRRGKIV KLKEVVDEAI EDFDFVKNVV VVERTKNEIP MTCKDKLWND LMNDASDNCP AEKLDSAHPL YILYTSGTTG KPKGVLHGTG GYLTHLYSTF KWAFDIKDSD VFFCTADIGW VTGHSYVVYA PLLHGATEIM YEGAPDFPDA SRMWDILQKY KATIFYTTPT ALRMFMKFGD DIPNSFDLST LRLLGTVGEP INPEVWRWYF KTIGKEKCPI IDTWWQTETG GMLISPLPGL ETIPLKPGSG TLPIPGVNIT VVDENGKDVE PNTKGYLVVK NPWPGMLLTL WGDDEKYKTV YWSKYENCYY PGDYALKDAD GYLWLLGRAD DVLKVAGHRI GTAELESCIV SHDDVAESAA CGIPDEVKGE VIIAFVVLKE GINTETKVLE KELVEKIRTD IGAIATPKQI YFVSKLPKTR SGKIMRRLLK AIGNNEKIGD VSTLEDGAAV IEVQTAFDEI QKSIKESN // ID A9A5Z6_NITMS Unreviewed; 571 AA. AC A9A5Z6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 52. DE RecName: Full=Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518}; DE Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518}; DE Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518}; DE EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518}; GN Name=ade {ECO:0000256|HAMAP-Rule:MF_01518}; GN OrderedLocusNames=Nmar_1578 {ECO:0000313|EMBL:ABX13474.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13474.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13474.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13474.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: Adenine + H(2)O = hypoxanthine + NH(3). CC {ECO:0000256|HAMAP-Rule:MF_01518}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01518}; CC -!- SIMILARITY: Belongs to the adenine deaminase family. CC {ECO:0000256|HAMAP-Rule:MF_01518}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13474.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z6; -. DR STRING; 436308.Nmar_1578; -. DR EnsemblBacteria; ABX13474; ABX13474; Nmar_1578. DR KEGG; nmr:Nmar_1578; -. DR eggNOG; arCOG00693; Archaea. DR eggNOG; COG1001; LUCA. DR HOGENOM; HOG000276949; -. DR KO; K01486; -. DR OMA; CTDDKHL; -. DR BioCyc; NMAR436308:GI3J-1622-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000034; F:adenine deaminase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006146; P:adenine catabolic process; IEA:InterPro. DR Gene3D; 2.30.40.10; -; 2. DR HAMAP; MF_01518; Adenine_deamin; 1. DR InterPro; IPR006679; Adenine_deam. DR InterPro; IPR026912; Adenine_deam_C. DR InterPro; IPR006680; Amidohydro-rel. DR InterPro; IPR011059; Metal-dep_hydrolase_composite. DR InterPro; IPR032466; Metal_Hydrolase. DR Pfam; PF13382; Adenine_deam_C; 1. DR Pfam; PF01979; Amidohydro_1; 1. DR SUPFAM; SSF51338; SSF51338; 2. DR SUPFAM; SSF51556; SSF51556; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_01518, KW ECO:0000313|EMBL:ABX13474.1}; KW Manganese {ECO:0000256|HAMAP-Rule:MF_01518}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 61 344 Amidohydro-rel. FT {ECO:0000259|Pfam:PF01979}. FT DOMAIN 398 564 Adenine_deam_C. FT {ECO:0000259|Pfam:PF13382}. SQ SEQUENCE 571 AA; 62721 MW; 7B603287DE63E5C2 CRC64; MGDKKADLIL KNCNLLSVYT REIIPKTQIA ITGERIAYVG PDATHAQGPK TKVIDVKNKY VGPGFADPHL HIDQFVLPSE FAKQALLCGV TSLFSDPIDV VSVGGYKGFQ EFLKLGEDLP VRIFQVVPGG LPVDAKFSNS NTLTLSQEKS AVKHPHVLGL GEVFSWTKVT LREPKTMKSL SAMLECDCII NGHTAGASDK KLNAYVSSGV LSCHEPINFD QVLERLRLGM WIMIREGSIR RDLKEIVPRV LSHGTYLNRL MFCSDGLDPQ DITKFGHIDH CIRESIKLGL EPIDAVSMAS KNNFDYYNMG KDLGGIAPGK LADILIFNDL KSFRPKTVFV GGKLAVSDGK IVFPIKKKTI SPWIKNTVKL KKFSKNDFEI KSKKKDVIAN TIFMQTEIIT KIGSAELQSK NNLISASLDS DIWKVAAFDR THGTSKHSIG FLENFGADIG AFASTWSFHE NDLIVIGSND SDMEVASNHL IKNQGGLVVV KSGKILASLP LQFAGIVSTD SFEKVSSNFE KINNSIVDSG CKFSRPHLIP LFLPFLALPS VRILSGGIVD VKKRSYISPI N // ID A9A1V7_NITMS Unreviewed; 86 AA. AC A9A1V7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12078.1}; GN OrderedLocusNames=Nmar_0182 {ECO:0000313|EMBL:ABX12078.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12078.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12078.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12078.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12078.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0182; -. DR EnsemblBacteria; ABX12078; ABX12078; Nmar_0182. DR KEGG; nmr:Nmar_0182; -. DR eggNOG; arCOG08824; Archaea. DR eggNOG; ENOG411117J; LUCA. DR HOGENOM; HOG000110864; -. DR OMA; WRFRESH; -. DR BioCyc; NMAR436308:GI3J-184-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0022900; P:electron transport chain; IEA:InterPro. DR InterPro; IPR011759; Cyt_c_oxidase_su2_TM_dom. DR SUPFAM; SSF81464; SSF81464; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 67 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 86 AA; 9780 MW; CD0E6EF62E8483BB CRC64; MKGIVGLFLV LAVMVIVPAV EYAFAAGDEP GEYLDRRVVI WNLFFRMMTI AFVVGAVVSG TMIWQVWRFR ESHPKAKPTP YEGTDW // ID A9A4Y9_NITMS Unreviewed; 1734 AA. AC A9A4Y9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13443.1}; GN OrderedLocusNames=Nmar_1547 {ECO:0000313|EMBL:ABX13443.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13443.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13443.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13443.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13443.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1547; -. DR EnsemblBacteria; ABX13443; ABX13443; Nmar_1547. DR KEGG; nmr:Nmar_1547; -. DR eggNOG; arCOG08647; Archaea. DR eggNOG; ENOG410Z3CW; LUCA. DR HOGENOM; HOG000105415; -. DR OMA; ANDATHY; -. DR BioCyc; NMAR436308:GI3J-1590-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 1734 AA; 183081 MW; AAF9445F08CB14AA CRC64; MNNEIGRKIT SLTLMTIMVA GGLTFAIPGV MPEAMAANAN LFVSAENSQF DNYMSGPQVI EVVVIDSDIN DTDEAKGEPD VTVNGKVLRM VQAVDGNWYG YFADRDQAQI ADSTATTADS GLDFGVFCAS SSGTAALGFS TTETDGIAIP ITIANATATG NGTQTGSSSG GAITTTCAAN TLDASTANGT INVVREAKDP VAASGSVSVG QIGLKNGTAN SGPNWPFIQL YELNPTGNVV VQYNKGGGVQ STTLTFDTVD QFAELSLDRT VFPRVSQVHA TITDLWLNID PTDEDSWTFA TNTKNTTSSF NVDTFYQVFD ENGASGGSAL TLRTTLSSLM CEDNCVLTLD VDAQSSGTPV VTIQDNGDSI LTQLNASSNT NANNASAFGI STETAKLGTG SIPVTITEQG PNSGVFGTYD ESDKSVLKIT DNAKRGTSAS LDYNETPQTI LVGFSFASID IQPVTDEWTS GQEIPVVIVD ADQNKNSRAD EDLDLNNPDV TLIPALRTGD PFTIDEGGTP SLIFTNGTNG DDSIFDTGAI NNTSAGQVGN FTLNINVTRF SSATNITSTE SIDTFSKRLI SAQTANSSAN FDVDFAIIDL GSATLETLKE TVVDEDNTAV GFNFFNYDVR SLGADTVSIA LLNTTGNILP WVNNDTRNVD KNNAILLVSN STNSQAYVDL TNAVSDAVYG STNTDSNVNI GFAMYFTGVG DLAAKEVIVM DFFSFGFTDD GVQSSERFAN QIIRIEAEET GDNTSTFEGS LEYVMVNQIN IQDAGTFSGI TPIADDPSFI VIEDLTDEDA PRVNYNDLGA DGVTTPVSDQ EEAPSHSGVV SLNADSYKIA DTVVITVEDL DLNVDSDLID IFTVVSDNSK ATDDAVGSAT TQSLSFGELG RLLDVTFDDV IWSTPDGANN TATGNDSDTC STELSNAGIT DTGLGATGFT LVETGAATGV FVGDFQIPSF WCRVSDTTTT PYTYAGDEET TTGLDIEVNY VDFRDASGEI VEVGDSAGVR ANTGSVSLDR TVYPVPFGTI ADSSKAANAA PNGRSVFPIH ATGITSTIDS TEELPTGDLT IHVRINDPDF DENPAGEDAM DQDNALKISV IRGSDSVVLG YAGASERTGK IDVGGNNGTI SNIRSFGEMD EIAPDAGIFE LDVNIKFTDG PASAQCNSHD TLYTALDGTT GKADTNRFDD GAASGQEYCI LQGDILQVEY TDPADASGDA NTVTDSATFD LRNGVLQSDK SVYIIGSDMI LTLIEPDFDL DNDSAETYDL DLIEWDSDAA TTTMGNKGVT GAAAAFDPEP TDFRETGDST GIFQIVIEIP ESLSNDKLER GEEIILEYTD WGPSGSDYVG DEDEDVNLTI YTSNFGATVE LDQKVYSWTD KVYITIVAPD HNFDSDLVDE IGETDSDPIK VSTRGFDLDN YKLVETGTDT GIFTGEVILT GFTAHDADGD GNTGDATGTT SGSGPTDGLL ATDDDDGLTV SFEFSEDETI VGSALIRWNI GEVQWLEASY PASGTGVVRV IDPDMNLDPE AVDNFEVDVW SDSDAGGIDL TVTETNEATG IFEGTVFFTT LDESSGHRLR VSEGDTVTAE YEDNTLPDPY TTADELDITA TSLIGTVVPP LERAPAANLR TVDAFGNSLD SVSVDQQVQI SADLANGQDR EQSFAYLVQI QDANGVTVSL AWITGSLSSG QSFSPALSWI PTEAGTYTAT AFVWESVDNP TALSPPVSTT VNVS // ID A9A189_NITMS Unreviewed; 417 AA. AC A9A189; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Phosphate ABC transporter, periplasmic phosphate-binding protein {ECO:0000313|EMBL:ABX12375.1}; GN OrderedLocusNames=Nmar_0479 {ECO:0000313|EMBL:ABX12375.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12375.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12375.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12375.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12375.1; -; Genomic_DNA. DR ProteinModelPortal; A9A189; -. DR STRING; 436308.Nmar_0479; -. DR EnsemblBacteria; ABX12375; ABX12375; Nmar_0479. DR KEGG; nmr:Nmar_0479; -. DR eggNOG; arCOG00213; Archaea. DR eggNOG; COG0226; LUCA. DR HOGENOM; HOG000236792; -. DR KO; K02040; -. DR OMA; GEIEYWD; -. DR BioCyc; NMAR436308:GI3J-499-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:InterPro. DR GO; GO:0042301; F:phosphate ion binding; IEA:InterPro. DR GO; GO:0035435; P:phosphate ion transmembrane transport; IEA:InterPro. DR InterPro; IPR005673; ABC_phos-bd_PstS. DR InterPro; IPR024370; PBP_domain. DR Pfam; PF12849; PBP_like_2; 1. DR TIGRFAMs; TIGR00975; 3a0107s03; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 36 319 PBP_domain. {ECO:0000259|Pfam:PF12849}. SQ SEQUENCE 417 AA; 45310 MW; 5C90DE590F6B26B5 CRC64; MRKQITSILL IATLVAIVPP LNANADSMPD APPENVDFTI TGAGATFPFP LIDLWRVEYN KVYNNVNLNY QSIGSGGGIK QHIEKTVNFA ASDKPMSNSE RELAPGTLHI PESIGGVVLV YNIPEVPEKG LKLTANAVSK IFLGEVTKWN DPVIADENPG LNLPDKNIVS AHRSDGSGTT FIFTDYLSTV SPTWYDQVGK GKSVPWPTGL AAAGNEGVAG IVKSTEYSIG YIELAYAFQT GMSYAFVQNA DKSGFIEPTL DTISAASSGV ADSLPSADES WSEVSIVNAP GSDSYPLASF TYLLVYDDLK SVTDNKEQAK VVIHMIHWMI TDGQDFAPSL LYVPLADKVI EIGKNGLSQV TFDGESLWDY ESVVKETDLG IPQWIRDNAK WWSEGLITDE DYINGLQYLI TQGILKI // ID A9A5I3_NITMS Unreviewed; 238 AA. AC A9A5I3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE RecName: Full=30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; GN Name=rps4e {ECO:0000256|HAMAP-Rule:MF_00485}; GN OrderedLocusNames=Nmar_0798 {ECO:0000313|EMBL:ABX12694.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12694.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12694.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12694.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S4e family. CC {ECO:0000256|HAMAP-Rule:MF_00485}. CC -!- SIMILARITY: Contains 1 S4 RNA-binding domain. {ECO:0000256|HAMAP- CC Rule:MF_00485}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12694.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0798; -. DR EnsemblBacteria; ABX12694; ABX12694; Nmar_0798. DR KEGG; nmr:Nmar_0798; -. DR eggNOG; arCOG04093; Archaea. DR eggNOG; COG1471; LUCA. DR HOGENOM; HOG000231324; -. DR KO; K02987; -. DR OMA; HIQLNLH; -. DR BioCyc; NMAR436308:GI3J-825-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00485; Ribosomal_S4e; 1. DR InterPro; IPR000876; Ribosomal_S4e. DR InterPro; IPR013845; Ribosomal_S4e_central_region. DR InterPro; IPR013843; Ribosomal_S4e_N. DR PANTHER; PTHR11581; PTHR11581; 1. DR Pfam; PF00900; Ribosomal_S4e; 1. DR Pfam; PF08071; RS4NT; 1. DR ProDom; PD002667; Ribosomal_S4e_central; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00485, KW ECO:0000313|EMBL:ABX12694.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00485, KW ECO:0000313|EMBL:ABX12694.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00485}. FT DOMAIN 6 40 RS4NT. {ECO:0000259|Pfam:PF08071}. FT DOMAIN 43 104 S4 RNA-binding. {ECO:0000256|HAMAP- FT Rule:MF_00485}. FT DOMAIN 99 169 Ribosomal_S4e. FT {ECO:0000259|Pfam:PF00900}. SQ SEQUENCE 238 AA; 26407 MW; 6F07FA32C308DC73 CRC64; MVSISGSKKL KRQMAPQFWG IARKDKRFVI TTRPGPHKKH HAVPTAVFLR DMLKIVTSLR EAKTSIYTGK VKIDGVVRKS LHHAIGLMDV VELENVSDIY RLVPTDGKLL KPIKINESEK TKKLVRVTSK TTISKGKMQI GFHDGRSTIS DTKVSVGDVC LIQVPDQKIL EVIKLESGNH GLVTRGINAG QIGKIESIEE GTFILPKRVI LSLGDRKIEI PADIIMPIGK EEPVIQLK // ID A9A140_NITMS Unreviewed; 722 AA. AC A9A140; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 59. DE SubName: Full=AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:ABX12001.1}; DE EC=3.6.4.6 {ECO:0000313|EMBL:ABX12001.1}; GN OrderedLocusNames=Nmar_0101 {ECO:0000313|EMBL:ABX12001.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12001.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12001.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12001.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12001.1; -; Genomic_DNA. DR ProteinModelPortal; A9A140; -. DR STRING; 436308.Nmar_0101; -. DR EnsemblBacteria; ABX12001; ABX12001; Nmar_0101. DR KEGG; nmr:Nmar_0101; -. DR eggNOG; arCOG01308; Archaea. DR eggNOG; COG0464; LUCA. DR HOGENOM; HOG000223224; -. DR KO; K13525; -. DR OMA; VGMSDFL; -. DR BioCyc; NMAR436308:GI3J-104-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.330.10; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR005938; AAA_ATPase_CDC48. DR InterPro; IPR009010; Asp_de-COase-like_dom. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR003960; ATPase_AAA_CS. DR InterPro; IPR004201; Cdc48_dom2. DR InterPro; IPR029067; CDC48_domain_2-like. DR InterPro; IPR003338; CDC4_N-term_subdom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00004; AAA; 2. DR Pfam; PF02933; CDC48_2; 1. DR Pfam; PF02359; CDC48_N; 1. DR SMART; SM00382; AAA; 2. DR SMART; SM01072; CDC48_2; 1. DR SMART; SM01073; CDC48_N; 1. DR SUPFAM; SSF50692; SSF50692; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR SUPFAM; SSF54585; SSF54585; 1. DR TIGRFAMs; TIGR01243; CDC48; 1. DR PROSITE; PS00674; AAA; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12001.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 92 CDC48_N. {ECO:0000259|SMART:SM01073}. FT DOMAIN 104 167 CDC48_2. {ECO:0000259|SMART:SM01072}. FT DOMAIN 210 346 AAA. {ECO:0000259|SMART:SM00382}. FT DOMAIN 483 620 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 722 AA; 79664 MW; 57B7EBF83010B3AB CRC64; MSQNALSLKV LEAYTRDVGR GVARIDYDSM DTLNASTGDV IEIKGKRRTV AKCLPLYPSD EGKGIIRIDG LGRNNSGIAI GDTISVRKIK AVAAEKVVVA PLEAIPPIDE RYLADALESV PLIKGDNVMV PYFGGRLTFQ VIGVTPAADA VLITQKTVFH IAEKGETLRG VPQVTYEDIG GLTDEIKKVR EMIELPLRHP EIFEKLGIEA PKGVLLYGPP GTGKTLLAKA VANESNAHFI SISGPEIMSK FYGESEARLR EIFKEAREKA PSIIFVDEID SIAPKREEVT GEVERRVVSQ MLSLMDGLEA RGKVIVISAT NRPNAIDPAL RRPGRFDREI EIKVPDKKGR KDILAIHSRN MPLSDDVNVD KISAISHGYV GADLEYLCKE AAMKCLRRLL PILNLEEEKI PPETLDKLIV NHEDFQKALI EVTPSGMREV FIENPDVKWD EVGGLEDVKR ELQEAVEWPM KYPALYDKLG HSMPRGILLH GPSGTGKTLL AKAVATQSEA NFVSVRGPEL LSKWVGESER GIREIFKRAR QSAPCVVFFD EIDSIAPIRG AGGETAVTER VVSQLLTELD GMENMHGVVV LAATNRADMI DPALLRPGRF DKIIQVPNPD KDSRKRILEI NAEKIPMGDD VDMEKIAEIT DGMSGADTSS IANTAVSLVI HEFLDKHPDV KDVEKSSIEA KVTMKHFEEA VKKVREQKDL KMGEKLVASY YR // ID A9A311_NITMS Unreviewed; 709 AA. AC A9A311; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 67. DE RecName: Full=ATP-dependent DNA helicase Hel308 {ECO:0000256|HAMAP-Rule:MF_00442}; DE EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00442}; GN Name=hel308 {ECO:0000256|HAMAP-Rule:MF_00442}; GN OrderedLocusNames=Nmar_0243 {ECO:0000313|EMBL:ABX12139.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12139.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12139.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12139.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: DNA-dependent ATPase and 3'-5' DNA helicase that may be CC involved in repair of stalled replication forks. CC {ECO:0000256|HAMAP-Rule:MF_00442}. CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00442}. CC -!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_00442}. CC -!- SIMILARITY: Belongs to the helicase family. Hel308 subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00442}. CC -!- SIMILARITY: Contains 1 helicase ATP-binding domain. CC {ECO:0000256|HAMAP-Rule:MF_00442}. CC -!- SIMILARITY: Contains 1 helicase C-terminal domain. CC {ECO:0000256|HAMAP-Rule:MF_00442}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12139.1; -; Genomic_DNA. DR ProteinModelPortal; A9A311; -. DR STRING; 436308.Nmar_0243; -. DR EnsemblBacteria; ABX12139; ABX12139; Nmar_0243. DR KEGG; nmr:Nmar_0243; -. DR eggNOG; arCOG00553; Archaea. DR eggNOG; COG1204; LUCA. DR HOGENOM; HOG000227028; -. DR KO; K03726; -. DR OMA; EHDYRPV; -. DR BioCyc; NMAR436308:GI3J-250-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 3. DR HAMAP; MF_00442; Helicase_Hel308; 1. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR022965; Helicase_Hel308. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF00271; Helicase_C; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS51195; Q_MOTIF; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00442, KW ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX12139.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA damage {ECO:0000256|HAMAP-Rule:MF_00442}; KW DNA repair {ECO:0000256|HAMAP-Rule:MF_00442}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00442}; KW Helicase {ECO:0000256|HAMAP-Rule:MF_00442, KW ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX12139.1}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00442, KW ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX12139.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00442, KW ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX12139.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 29 Q_MOTIF. {ECO:0000259|PROSITE:PS51195}. FT DOMAIN 33 204 Helicase ATP-binding. {ECO:0000256|HAMAP- FT Rule:MF_00442, FT ECO:0000259|PROSITE:PS51192}. FT DOMAIN 238 439 Helicase C-terminal. {ECO:0000256|HAMAP- FT Rule:MF_00442, FT ECO:0000259|PROSITE:PS51194}. FT NP_BIND 46 53 ATP. {ECO:0000256|HAMAP-Rule:MF_00442}. FT MOTIF 149 152 DEAH box. {ECO:0000256|HAMAP- FT Rule:MF_00442}. FT BINDING 28 28 ATP. {ECO:0000256|HAMAP-Rule:MF_00442}. SQ SEQUENCE 709 AA; 79220 MW; 6D9BB19314757C58 CRC64; MKIEKLELPE SAIEFLKSQG FEKLYPPQAD SVKSGLLDGK NILVSAPTAS GKTLIAMLAM MSYISKNKGK VIYLSPLRAL AAEKFSEFKK LEKVGLGNKT KVGISTGDFE NIEKNLEKNS ILILTNEKMD SIIRHGAEWI DEIGLVIADE VHLIGDESRG PTLEMILTQL KLLETKPQIV GLSATITNSD EIADWLECVL VENSWRPVPL SEGVCDAGEV TMADGTVFEV ERSIRGTPID LGVQSVKDGG QSLVFAETRT RSKSLATKAA DAISQILEKK EISQLEKTSK KILSENEHTE LVKTLALLVK KGVAFHHAGL NQNCREIIET EFRNGTIKLL SSTPTLAAGV NLPARRVVIS NVNRYNAKVG ANRPISILEY KQLCGRAGRP QYDNHGESII VGNGNTDDLI DYYIHGEPEP IESKITDDKS LRTHLLSVIV TNPGIKKEDI LEFFLQTLGG MQSRKATVKF AIDISLRFLS SQYLIVKKGE RYAATEFGKK TSMLYIDPLT ATYFRDALEN VSEERKHTFG FLHLISNCEE FFPKFSLRQK DYETASLMIE NNSSELLEPI SEYDCSRSLL ALQSWITEST ELNLSDSLGI ESGDMHRMTE TGNWLCYCLR EIAKHVERAD LLEELGDLRR RISYGIREEL LDLVRVKGIG RVRARILFKH GIKNLDDLAK IPVNKLAEID KIGSTIADNI KTELRRVRY // ID A9A625_NITMS Unreviewed; 171 AA. AC A9A625; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 61. DE RecName: Full=Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00538539}; DE Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909}; DE AltName: Full=TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; DE AltName: Full=Transcription initiation factor TFIIE {ECO:0000256|HAMAP-Rule:MF_01909}; GN Name=tfe {ECO:0000256|HAMAP-Rule:MF_01909}; GN OrderedLocusNames=Nmar_1607 {ECO:0000313|EMBL:ABX13503.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13503.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13503.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13503.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Transcription factor that plays a role in the activation CC of archaeal genes transcribed by RNA polymerase. Facilitates CC transcription initiation by enhancing TATA-box recognition by CC TATA-box-binding protein (Tbp), and transcription factor B (Tfb) CC and RNA polymerase recruitment. Not absolutely required for CC transcription in vitro, but particularly important in cases where CC Tbp or Tfb function is not optimal. It dynamically alters the CC nucleic acid-binding properties of RNA polymerases by stabilizing CC the initiation complex and destabilizing elongation complexes. CC Seems to translocate with the RNA polymerase following initiation CC and acts by binding to the non template strand of the CC transcription bubble in elongation complexes. {ECO:0000256|HAMAP- CC Rule:MF_01909, ECO:0000256|SAAS:SAAS00538538}. CC -!- SUBUNIT: Monomer. Interaction with RNA polymerase subunits RpoF CC and RpoE is necessary for Tfe stimulatory transcription activity. CC Able to interact with Tbp and RNA polymerase in the absence of DNA CC promoter. Interacts both with the preinitiation and elongation CC complexes. {ECO:0000256|HAMAP-Rule:MF_01909}. CC -!- DOMAIN: The winged helix domain is involved in binding to DNA in CC the preinitiation complex. {ECO:0000256|HAMAP-Rule:MF_01909}. CC -!- SIMILARITY: Belongs to the TFE family. {ECO:0000256|HAMAP- CC Rule:MF_01909, ECO:0000256|SAAS:SAAS00538544}. CC -!- SIMILARITY: Contains 1 HTH TFE/IIEalpha-type domain. CC {ECO:0000256|HAMAP-Rule:MF_01909}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13503.1; -; Genomic_DNA. DR ProteinModelPortal; A9A625; -. DR STRING; 436308.Nmar_1607; -. DR EnsemblBacteria; ABX13503; ABX13503; Nmar_1607. DR KEGG; nmr:Nmar_1607; -. DR eggNOG; arCOG04270; Archaea. DR eggNOG; COG1675; LUCA. DR HOGENOM; HOG000015477; -. DR KO; K03136; -. DR OMA; DSGWLTY; -. DR BioCyc; NMAR436308:GI3J-1651-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:UniProtKB-HAMAP. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 1. DR HAMAP; MF_01909; TFE_arch; 1. DR InterPro; IPR016481; TF_E_archaea. DR InterPro; IPR017919; TFIIE/TFIIEa_HTH. DR InterPro; IPR002853; TFIIE_asu. DR InterPro; IPR024550; TFIIEa/SarR/Rpc3_HTH_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02002; TFIIE_alpha; 1. DR PIRSF; PIRSF006373; TF_E_archaea; 1. DR SMART; SM00531; TFIIE; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS51344; HTH_TFE_IIE; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_01909, KW ECO:0000256|SAAS:SAAS00538543}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_01909, KW ECO:0000256|SAAS:SAAS00548152}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_01909, KW ECO:0000256|SAAS:SAAS00548152}. FT DOMAIN 5 88 HTH TFE/IIEalpha-type. FT {ECO:0000256|HAMAP-Rule:MF_01909, FT ECO:0000259|PROSITE:PS51344}. FT COILED 146 171 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 171 AA; 20176 MW; 1FFD4BF093BCC7C8 CRC64; MVDKYEDPFV RIASMIGGDE YLKVARSLLK AEDATDEEIA SSTGLRINMV RKVLYDLFGK SLITGIRVKD ERKGWFVYRW RTRREEVEHF IENQKKKIEE RLQQRLDYEN ASDFYHCGNE DCPRVTFEDA LEGMFKCPSC GNVLNLKKND KSKKAYQKKI DEIKKDMQQV F // ID A9A5B7_NITMS Unreviewed; 422 AA. AC A9A5B7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE RecName: Full=3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; DE EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027}; DE AltName: Full=Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; DE AltName: Full=Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; GN Name=leuC {ECO:0000256|HAMAP-Rule:MF_01027}; GN OrderedLocusNames=Nmar_0420 {ECO:0000313|EMBL:ABX12316.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12316.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12316.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12316.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the isomerization between 2-isopropylmalate CC and 3-isopropylmalate, via the formation of 2-isopropylmaleate. CC {ECO:0000256|HAMAP-Rule:MF_01027}. CC -!- CATALYTIC ACTIVITY: (2R,3S)-3-isopropylmalate = (2S)-2- CC isopropylmalate. {ECO:0000256|HAMAP-Rule:MF_01027}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01027}; CC Note=Binds 1 [4Fe-4S] cluster per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01027}; CC -!- PATHWAY: Amino-acid biosynthesis; L-leucine biosynthesis; L- CC leucine from 3-methyl-2-oxobutanoate: step 2/4. CC {ECO:0000256|HAMAP-Rule:MF_01027}. CC -!- SUBUNIT: Heterodimer of LeuC and LeuD. {ECO:0000256|HAMAP- CC Rule:MF_01027}. CC -!- SIMILARITY: Belongs to the aconitase/IPM isomerase family. LeuC CC type 2 subfamily. {ECO:0000256|HAMAP-Rule:MF_01027}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12316.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0420; -. DR EnsemblBacteria; ABX12316; ABX12316; Nmar_0420. DR KEGG; nmr:Nmar_0420; -. DR eggNOG; arCOG01698; Archaea. DR eggNOG; COG0065; LUCA. DR HOGENOM; HOG000226971; -. DR KO; K01703; -. DR OMA; KIEPQVA; -. DR BioCyc; NMAR436308:GI3J-438-MONOMER; -. DR UniPathway; UPA00048; UER00071. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003861; F:3-isopropylmalate dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0009098; P:leucine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.499.10; -; 2. DR Gene3D; 3.40.1060.10; -; 1. DR HAMAP; MF_01027; LeuC_type2; 1. DR InterPro; IPR015931; Acnase/IPM_dHydase_lsu_aba_1/3. DR InterPro; IPR015937; Acoase/IPM_deHydtase. DR InterPro; IPR001030; Acoase/IPM_deHydtase_lsu_aba. DR InterPro; IPR015932; Aconitase/IPMdHydase_lsu_aba_2. DR InterPro; IPR011826; HAcnase/IPMdehydase_lsu_prok. DR InterPro; IPR006251; Homoacnase/IPMdehydase_lsu. DR PANTHER; PTHR11670; PTHR11670; 1. DR Pfam; PF00330; Aconitase; 1. DR PRINTS; PR00415; ACONITASE. DR SUPFAM; SSF53732; SSF53732; 1. DR TIGRFAMs; TIGR01343; hacA_fam; 1. DR TIGRFAMs; TIGR02086; IPMI_arch; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_01027}; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_01027}; KW Branched-chain amino acid biosynthesis {ECO:0000256|HAMAP- KW Rule:MF_01027}; Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|HAMAP-Rule:MF_01027}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_01027}; KW Leucine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01027}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_01027, ECO:0000313|EMBL:ABX12316.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01027}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 20 414 Aconitase. {ECO:0000259|Pfam:PF00330}. FT METAL 305 305 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_01027}. FT METAL 363 363 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_01027}. FT METAL 366 366 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_01027}. SQ SEQUENCE 422 AA; 45453 MW; E6BBCA89735F8815 CRC64; MNIVEKILAR ASGKSQVAPD DVVFAKVDKV MVHDVSGPGV LKVFDKLKNK GVDVSKLWDP TKVWVAEDHF VPSAEKISAE NIVKLSNFTK NYGIEKHFKY GMGQYGICHT LSHEEAMVMP GDVYVGGDSH TNTTGALGAF ACGLGHTDIA YVLLNGQIWF KVPETDYFKL NGKLPDHVMA KDLILKIIGD IGTDGGNYRT MQFGGTGIDE MSVESRLTLC NMTTEAGAKN GIAEADQKVV DYLSSRGATN AQVFKGDDDA QYANVYEYEA SEMEPLVAKP FSPENIAVVR EAPSVELDKS YIGSCTGAKY EDLEAAAKIL KGKTVKIRTE ILPASISIYK RAMENGLLTI FLDAGVTVGP PTCGACCGAH MGVLAKNEIC ISTTNRNFPG RMGHVESETY LSSPMVAAAS AVTGKITDPR DL // ID A9A3P6_NITMS Unreviewed; 140 AA. AC A9A3P6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Translation initiation factor IF2/IF5 {ECO:0000313|EMBL:ABX13308.1}; GN OrderedLocusNames=Nmar_1412 {ECO:0000313|EMBL:ABX13308.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13308.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13308.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13308.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13308.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3P6; -. DR STRING; 436308.Nmar_1412; -. DR EnsemblBacteria; ABX13308; ABX13308; Nmar_1412. DR KEGG; nmr:Nmar_1412; -. DR eggNOG; arCOG01640; Archaea. DR eggNOG; COG1601; LUCA. DR HOGENOM; HOG000107197; -. DR KO; K03238; -. DR OMA; PDHLMKY; -. DR BioCyc; NMAR436308:GI3J-1447-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW. DR Gene3D; 3.30.30.50; -; 1. DR InterPro; IPR002735; Transl_init_fac_IF2/IF5. DR InterPro; IPR016189; Transl_init_fac_IF2/IF5_N. DR InterPro; IPR016190; Transl_init_fac_IF2/IF5_Zn-bd. DR Pfam; PF01873; eIF-5_eIF-2B; 1. DR SMART; SM00653; eIF2B_5; 1. DR SUPFAM; SSF100966; SSF100966; 1. DR SUPFAM; SSF75689; SSF75689; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Initiation factor {ECO:0000313|EMBL:ABX13308.1}; KW Protein biosynthesis {ECO:0000313|EMBL:ABX13308.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 140 AA; 16257 MW; BE552F637963E375 CRC64; MTKAEYENLL KRIQDKLGDT EKTSTARFEL PVVDVMWEGQ KTFLRNFSEF PKVLRRDPDK VLQYLSKEFA VPAERIGDKA MFIGKRDPDD FTRLFQIYVK DYLECPTCKS PDTKILKENR ISFLICEACG AKSTLKGKYA // ID A9A2R4_NITMS Unreviewed; 330 AA. AC A9A2R4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 34. DE SubName: Full=Putative GAF sensor protein {ECO:0000313|EMBL:ABX13591.1}; GN OrderedLocusNames=Nmar_1695 {ECO:0000313|EMBL:ABX13591.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13591.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13591.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13591.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13591.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1695; -. DR EnsemblBacteria; ABX13591; ABX13591; Nmar_1695. DR KEGG; nmr:Nmar_1695; -. DR eggNOG; arCOG01580; Archaea. DR eggNOG; COG1522; LUCA. DR BioCyc; NMAR436308:GI3J-1740-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.30.450.40; -; 1. DR InterPro; IPR003018; GAF. DR InterPro; IPR029016; GAF_dom-like. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF13185; GAF_2; 1. DR SMART; SM00065; GAF; 1. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF55781; SSF55781; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 182 329 GAF. {ECO:0000259|SMART:SM00065}. SQ SEQUENCE 330 AA; 38686 MW; F149B8EC0A5A4930 CRC64; MVDEIDKIIL TELGKNARRS SKDITKILQN MNYHITDRGI RHRLQRLEKN NTVVGYSVTL NPELISEKVN RTIVLKFKFT KDTPELINRL TEYVNESHFC TYSSRLNGDF DWICHFIFDS VEQFDLETNN FLNKFSELIS DYRSYESNLV KNTPYTIFDQ EHVNEKKLQA WNILQQIKKY DTLNERLQSI VESLVKYFDA TFARVWFVDK SEKSLILRFS AGKYKNVKGE FSKVPIKSLK IGAIVTTKKP IVSNDVIHDP RIKYHDWAKK EKLKSFAGYP LMYNKKVVAV LALFSKKQFS PSDFEILGMF SDQISKELTG FFETKDFLSE // ID A9A307_NITMS Unreviewed; 178 AA. AC A9A307; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABX12135.1}; GN OrderedLocusNames=Nmar_0239 {ECO:0000313|EMBL:ABX12135.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12135.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12135.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12135.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12135.1; -; Genomic_DNA. DR ProteinModelPortal; A9A307; -. DR STRING; 436308.Nmar_0239; -. DR EnsemblBacteria; ABX12135; ABX12135; Nmar_0239. DR KEGG; nmr:Nmar_0239; -. DR eggNOG; arCOG04548; Archaea. DR eggNOG; COG1146; LUCA. DR HOGENOM; HOG000044616; -. DR OMA; MACQEAC; -. DR BioCyc; NMAR436308:GI3J-245-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR Pfam; PF13237; Fer4_10; 1. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 63 92 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 123 152 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 178 AA; 19736 MW; 0DEBA04282ED9F19 CRC64; MPIDEKFVEN LEVTGKTLHS DGENKHFIWG SGRTDGEAFS NDDVKAAYEA RGEEQVPLGI HGTTVAVDWD SCVAAGSCMS VCPVQTFQWY RTEKDIPAKD VNGATFDGTG LTEQDERLDY TDKSQPIREH DCTQCMACQE ACPTHAILIE PSYQEYHEKA DGSYVKMESS SVNPHAHD // ID A9A499_NITMS Unreviewed; 450 AA. AC A9A499; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Peptidase M20 {ECO:0000313|EMBL:ABX12588.1}; GN OrderedLocusNames=Nmar_0692 {ECO:0000313|EMBL:ABX12588.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12588.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12588.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12588.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12588.1; -; Genomic_DNA. DR ProteinModelPortal; A9A499; -. DR STRING; 436308.Nmar_0692; -. DR EnsemblBacteria; ABX12588; ABX12588; Nmar_0692. DR KEGG; nmr:Nmar_0692; -. DR eggNOG; arCOG01110; Archaea. DR eggNOG; COG0624; LUCA. DR HOGENOM; HOG000216706; -. DR OMA; SDGWHAP; -. DR BioCyc; NMAR436308:GI3J-717-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.30.70.360; -; 1. DR InterPro; IPR002933; Peptidase_M20. DR InterPro; IPR011650; Peptidase_M20_dimer. DR Pfam; PF07687; M20_dimer; 1. DR Pfam; PF01546; Peptidase_M20; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 192 349 M20_dimer. {ECO:0000259|Pfam:PF07687}. SQ SEQUENCE 450 AA; 49805 MW; 63F53BDD24141F8F CRC64; MNPLKHVDDH MEDLISDLQT LIRQPSVSAK NEGIEECAKL VQKLLKKSGV KSEILRLKKG VAPIVYGEVK SKQNPNKTLM FYNHYDVQPA EPFDLWDSPP FSGTRKGNKI FGRGATDDKG ELITRIKAVD ACLKATGDVP CNIKFVIEGE EETGSANIED YLKKYKKKFS CDGVIWEFGY VDAKNRPIIG LGMKGLLFVE LSVKESTRDA HSSLAVLIKN PAWRLIEAVH SLRDSNGKIL IKDWYKEVTP LSKQDLKLIQ SEPFDENDFK KEFGIKSFVG NKKGLDAKKA LVGGATCNIA GFVSGYTGDG AKTVLPSESL VKIDFRLVPK MDPKKQVMRL KRHLKSKGFS DIGIKVFHGE AAARTNSSNP FVSQVKDAAD KSFGTSILNV SNAGTGPMYP FVEILKAPCI AIGSTYMFSR IHSPNEFARV DLLKKMTKCA CLIMDNFGKS // ID A9A4A4_NITMS Unreviewed; 135 AA. AC A9A4A4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE SubName: Full=Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:ABX12593.1}; DE EC=1.8.4.11 {ECO:0000313|EMBL:ABX12593.1}; GN OrderedLocusNames=Nmar_0697 {ECO:0000313|EMBL:ABX12593.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12593.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12593.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12593.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12593.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4A4; -. DR STRING; 436308.Nmar_0697; -. DR EnsemblBacteria; ABX12593; ABX12593; Nmar_0697. DR KEGG; nmr:Nmar_0697; -. DR eggNOG; arCOG02815; Archaea. DR eggNOG; COG0229; LUCA. DR HOGENOM; HOG000243424; -. DR KO; K07305; -. DR OMA; RSHGMLR; -. DR BioCyc; NMAR436308:GI3J-722-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033743; F:peptide-methionine (R)-S-oxide reductase activity; IEA:InterPro. DR GO; GO:0008113; F:peptide-methionine (S)-S-oxide reductase activity; IEA:UniProtKB-EC. DR GO; GO:0030091; P:protein repair; IEA:InterPro. DR GO; GO:0006979; P:response to oxidative stress; IEA:InterPro. DR Gene3D; 2.170.150.20; -; 1. DR InterPro; IPR028427; Met_Sox_Rdtase. DR InterPro; IPR002579; Met_Sox_Rdtase_MsrB. DR InterPro; IPR011057; Mss4-like. DR PANTHER; PTHR10173; PTHR10173; 1. DR Pfam; PF01641; SelR; 1. DR SUPFAM; SSF51316; SSF51316; 1. DR TIGRFAMs; TIGR00357; TIGR00357; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12593.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 129 SelR. {ECO:0000259|Pfam:PF01641}. SQ SEQUENCE 135 AA; 15426 MW; 852F0657714D775A CRC64; MSEKIRKTPE EWKDQLTPDQ YEICINHGTE PPFSGKYNNT KLEGKFKCTC CGEELFSSDA KFDSGSGWPS FWEPLSEDKI EYISDTSYGM VRTEVNCNKC GAHLGHVFDD GPKPTNQRYC INSISLQHEK DEESQ // ID A9A3X9_NITMS Unreviewed; 253 AA. AC A9A3X9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=Putative serine/threonine protein kinase {ECO:0000313|EMBL:ABX13679.1}; GN OrderedLocusNames=Nmar_1783 {ECO:0000313|EMBL:ABX13679.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13679.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13679.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13679.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13679.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X9; -. DR STRING; 436308.Nmar_1783; -. DR EnsemblBacteria; ABX13679; ABX13679; Nmar_1783. DR KEGG; nmr:Nmar_1783; -. DR eggNOG; arCOG01182; Archaea. DR eggNOG; COG2112; LUCA. DR HOGENOM; HOG000110373; -. DR KO; K07176; -. DR OMA; LNRPGDH; -. DR BioCyc; NMAR436308:GI3J-1830-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW. DR InterPro; IPR011009; Kinase-like_dom. DR SUPFAM; SSF56112; SSF56112; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13679.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Serine/threonine-protein kinase {ECO:0000313|EMBL:ABX13679.1}; KW Transferase {ECO:0000313|EMBL:ABX13679.1}. SQ SEQUENCE 253 AA; 28345 MW; 7F875B268A38A7BD CRC64; MAHSFISIKK FVDEPYSEIL GYPKSTPRQT KSRINELDKL KIKSISLTGP TTLGKLEILG KGYVGVVVLA KKGSREVALK IRRIDSQRKE MKSEAKLLKL VNSVNVGPKM IDVSKNFLVM EYIEGIKIVD WVNSLKGVGS VKKLKSTIRK VLEDCYNLDQ IGFDHGELSN ISKHVIVGKT KSTLIDFESS SVKRRPSNVT SVTQAIFIGS GIAKKVQKIY KNPPKEKIIG ALKQYKQEKS LENFENLLKI LKL // ID A9A1F5_NITMS Unreviewed; 130 AA. AC A9A1F5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=TPR repeat-containing protein {ECO:0000313|EMBL:ABX13134.1}; GN OrderedLocusNames=Nmar_1238 {ECO:0000313|EMBL:ABX13134.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13134.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13134.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13134.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13134.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1F5; -. DR STRING; 436308.Nmar_1238; -. DR EnsemblBacteria; ABX13134; ABX13134; Nmar_1238. DR KEGG; nmr:Nmar_1238; -. DR eggNOG; arCOG03032; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000023835; -. DR BioCyc; NMAR436308:GI3J-1271-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR SMART; SM00028; TPR; 2. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 2. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 118 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 130 AA; 14984 MW; 09D56E925FC0B79B CRC64; MVGLFSRTPK DPNQKRNQEK FKEFKKLAKQ KKYDDALKLG TEYLRMVPNN HDALFTVGGI YYLKKKYKTA ISHFDQALEI GSYDVDVLLL KAYSHQKLGE NKRAIQCCEK IQEVDPKNKA ASELLSQLNS // ID A9A341_NITMS Unreviewed; 495 AA. AC A9A341; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE SubName: Full=Carbamoyl-phosphate synthase L chain ATP-binding {ECO:0000313|EMBL:ABX12169.1}; GN OrderedLocusNames=Nmar_0273 {ECO:0000313|EMBL:ABX12169.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12169.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12169.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12169.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12169.1; -; Genomic_DNA. DR ProteinModelPortal; A9A341; -. DR SMR; A9A341; 1-444. DR STRING; 436308.Nmar_0273; -. DR EnsemblBacteria; ABX12169; ABX12169; Nmar_0273. DR KEGG; nmr:Nmar_0273; -. DR eggNOG; arCOG01590; Archaea. DR eggNOG; COG0439; LUCA. DR HOGENOM; HOG000008988; -. DR KO; K18603; -. DR OMA; EAPSPIM; -. DR BioCyc; NMAR436308:GI3J-283-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004075; F:biotin carboxylase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.20; -; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR005481; BC-like_N. DR InterPro; IPR011764; Biotin_carboxylation_dom. DR InterPro; IPR005482; Biotin_COase_C. DR InterPro; IPR005479; CbamoylP_synth_lsu-like_ATP-bd. DR InterPro; IPR016185; PreATP-grasp_dom. DR InterPro; IPR011054; Rudment_hybrid_motif. DR Pfam; PF02785; Biotin_carb_C; 1. DR Pfam; PF00289; Biotin_carb_N; 1. DR Pfam; PF02786; CPSase_L_D2; 1. DR SMART; SM00878; Biotin_carb_C; 1. DR SUPFAM; SSF51246; SSF51246; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR PROSITE; PS50975; ATP_GRASP; 1. DR PROSITE; PS50979; BC; 1. DR PROSITE; PS00867; CPSASE_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:ABX12169.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000313|EMBL:ABX12169.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 446 Biotin carboxylation. FT {ECO:0000259|PROSITE:PS50979}. FT DOMAIN 120 317 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 495 AA; 55021 MW; 9CA22198FD8B33D8 CRC64; MIEKVLIANR GEIALRVIRT CNALGIKTVA VYSDEDYNSL HVKKADESYH IGEAAPAKSY LNQEKILEVM LSSGADAVHP GYGFLSENDD FARLCEKNKI NFIGPSADSM NLCGDKMECK AAMLKAQVPT VPGSPGLVDT AEEAEKIANE IGYPVLLKSV YGGGGRGIRL VTTDQELREG FETVTSESIA AVGKSAIIVE KFLEKTRHIE YQMCRDHHGN AVHLFERECS IQRRNQKLIE QTPSPVVDEA KREEIGELVV KAAEAVNYTN LGTAEFLRAD NGEFYFIEIN ARLQVEHPIS EMVSGLDFVK LQIDIANGET LPFKQKDLKM NGYAIECRIN AEDTFLDFAP STGPVPDVTI PAGPNVRCDT YLYPGCTVSP FYDSLMAKLC TWGPTFEESR TRMLTALNDM YVQGVETSIP LYKTILNSEE YKNGELSTDF LKRYGMIDKL SEDLKKEKED KSEAALAAAI IHSEYFKNRV QNDNASSATW KNKLD // ID A9A1W9_NITMS Unreviewed; 340 AA. AC A9A1W9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Glycosyltransferase 28 domain {ECO:0000313|EMBL:ABX12090.1}; GN OrderedLocusNames=Nmar_0194 {ECO:0000313|EMBL:ABX12090.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12090.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12090.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12090.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12090.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1W9; -. DR STRING; 436308.Nmar_0194; -. DR CAZy; GT1; Glycosyltransferase Family 1. DR EnsemblBacteria; ABX12090; ABX12090; Nmar_0194. DR KEGG; nmr:Nmar_0194; -. DR eggNOG; arCOG01393; Archaea. DR eggNOG; COG1819; LUCA. DR HOGENOM; HOG000108759; -. DR OMA; KMNKSMQ; -. DR BioCyc; NMAR436308:GI3J-197-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR InterPro; IPR007235; Glyco_trans_28_C. DR Pfam; PF04101; Glyco_tran_28_C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12090.1}. SQ SEQUENCE 340 AA; 38274 MW; E9709B73920DC466 CRC64; MVLVNFFSSP IGLGHVTRDI AIKNNFQNIT TNFVTGSGAA KILKKLEIQV DDVYHPPSFI VENGTLKSPA KWLWNYYQYY KDCKNISRNI LEKNRSNIVI SDEDFASLTV AQEMKIPTIL VTDILETHFT KGLASFIEKK MNKSMQEIIK KCEIVILPEI GDAQDNIQRV GPIVRQTDHT REQLREKFSF DKKTIVISIG GTDAGLFLIE KALEAITKIN QDVKIVLVSG PSVEKKFENV ENLGFVENLH EIIFAADVLI SLAGKSTIDE ANAYGTPAIF IPIKGHFEQE DNAKEQGFVF EDIKRLDKLI LSKLEEKRNK VNTEGAVKAA KIIQSLIDNY // ID A9A301_NITMS Unreviewed; 122 AA. AC A9A301; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 40. DE SubName: Full=Glyoxalase {ECO:0000313|EMBL:ABX12129.1}; GN OrderedLocusNames=Nmar_0233 {ECO:0000313|EMBL:ABX12129.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12129.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12129.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12129.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12129.1; -; Genomic_DNA. DR ProteinModelPortal; A9A301; -. DR STRING; 436308.Nmar_0233; -. DR EnsemblBacteria; ABX12129; ABX12129; Nmar_0233. DR KEGG; nmr:Nmar_0233; -. DR eggNOG; arCOG04946; Archaea. DR eggNOG; COG3324; LUCA. DR HOGENOM; HOG000232020; -. DR KO; K06996; -. DR OMA; STYICTI; -. DR BioCyc; NMAR436308:GI3J-239-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.180.10; -; 1. DR InterPro; IPR029068; Glyas_Bleomycin-R_OHBP_Dase. DR SUPFAM; SSF54593; SSF54593; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 122 AA; 13821 MW; 5E8F4FF0714A0794 CRC64; MPRVSHFDIP SDNPERTQKF YKEVFDWKFE KWDGPIDYWV INTGSEEKPG INGGLSKRIP GQIGITNTIT VPSIDEFSKK IVEKGGQIIV PKMAIPKVGW FAQCTDTEMN AFGIIEMDDK AK // ID A9A598_NITMS Unreviewed; 154 AA. AC A9A598; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE RecName: Full=50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; GN Name=rpl15 {ECO:0000256|HAMAP-Rule:MF_01341}; GN OrderedLocusNames=Nmar_0401 {ECO:0000313|EMBL:ABX12297.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12297.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12297.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12297.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000256|HAMAP- CC Rule:MF_01341}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01341}. CC -!- SIMILARITY: Belongs to the ribosomal protein L15P family. CC {ECO:0000256|HAMAP-Rule:MF_01341}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12297.1; -; Genomic_DNA. DR ProteinModelPortal; A9A598; -. DR STRING; 436308.Nmar_0401; -. DR PRIDE; A9A598; -. DR EnsemblBacteria; ABX12297; ABX12297; Nmar_0401. DR KEGG; nmr:Nmar_0401; -. DR eggNOG; arCOG00779; Archaea. DR eggNOG; COG0200; LUCA. DR HOGENOM; HOG000231263; -. DR KO; K02876; -. DR OMA; TITVEWR; -. DR BioCyc; NMAR436308:GI3J-418-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 4.10.990.10; -; 1. DR HAMAP; MF_01341; Ribosomal_L15; 1. DR InterPro; IPR027386; 50S_Rbsml_prot_L15P_N. DR InterPro; IPR030878; Ribosomal_L15. DR InterPro; IPR021131; Ribosomal_L18e/L15P. DR Pfam; PF00828; Ribosomal_L27A; 1. DR SUPFAM; SSF52080; SSF52080; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01341, KW ECO:0000313|EMBL:ABX12297.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01341, KW ECO:0000313|EMBL:ABX12297.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01341}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01341}. FT DOMAIN 29 137 Ribosomal_L18e/L15P. FT {ECO:0000259|Pfam:PF00828}. SQ SEQUENCE 154 AA; 16812 MW; BE4CE664EC2E431E CRC64; MATRLRKTRR LRGGRHMGWG QVGQHRASGH KGGLGVTGMM KHHWSTTLKD EPDHYGHDST KPPHPNITKK WASVRDLDDL FTKFGKEEGG KKVVDLENAG YEKLLGGGKV SNAYSVKVTQ YTASAEEKLK AVGGEVISAA KEKSDGEEVV TEDG // ID A9A5A3_NITMS Unreviewed; 332 AA. AC A9A5A3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE RecName: Full=Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; DE EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081}; DE AltName: Full=tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; DE AltName: Full=tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01081}; DE AltName: Full=tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01081}; GN Name=truB {ECO:0000256|HAMAP-Rule:MF_01081}; GN OrderedLocusNames=Nmar_0406 {ECO:0000313|EMBL:ABX12302.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12302.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12302.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12302.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Could be responsible for synthesis of pseudouridine from CC uracil-55 in the psi GC loop of transfer RNAs. {ECO:0000256|HAMAP- CC Rule:MF_01081}. CC -!- CATALYTIC ACTIVITY: tRNA uridine(55) = tRNA pseudouridine(55). CC {ECO:0000256|HAMAP-Rule:MF_01081}. CC -!- SIMILARITY: Belongs to the pseudouridine synthase TruB family. CC Type 2 subfamily. {ECO:0000256|HAMAP-Rule:MF_01081}. CC -!- SIMILARITY: Contains 1 PUA domain. {ECO:0000256|HAMAP- CC Rule:MF_01081}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12302.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5A3; -. DR STRING; 436308.Nmar_0406; -. DR EnsemblBacteria; ABX12302; ABX12302; Nmar_0406. DR KEGG; nmr:Nmar_0406; -. DR eggNOG; arCOG00987; Archaea. DR eggNOG; COG0130; LUCA. DR HOGENOM; HOG000231224; -. DR KO; K11131; -. DR OMA; HIPPKEY; -. DR BioCyc; NMAR436308:GI3J-423-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009982; F:pseudouridine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0031119; P:tRNA pseudouridine synthesis; IEA:UniProtKB-HAMAP. DR Gene3D; 2.30.130.10; -; 1. DR HAMAP; MF_01081; TruB_arch; 1. DR InterPro; IPR012960; Dyskerin-like. DR InterPro; IPR020103; PsdUridine_synth_cat_dom. DR InterPro; IPR002501; PsdUridine_synth_N. DR InterPro; IPR002478; PUA. DR InterPro; IPR015947; PUA-like_domain. DR InterPro; IPR004802; tRNA_PsdUridine_synth_B_fam. DR InterPro; IPR026326; TruB_arch. DR InterPro; IPR032819; TruB_C. DR InterPro; IPR004521; Uncharacterised_CHP00451. DR PANTHER; PTHR23127; PTHR23127; 1. DR Pfam; PF08068; DKCLD; 1. DR Pfam; PF01472; PUA; 1. DR Pfam; PF16198; TruB_C_2; 1. DR Pfam; PF01509; TruB_N; 2. DR SMART; SM01136; DKCLD; 1. DR SMART; SM00359; PUA; 1. DR SUPFAM; SSF55120; SSF55120; 1. DR SUPFAM; SSF88697; SSF88697; 1. DR TIGRFAMs; TIGR00425; CBF5; 1. DR TIGRFAMs; TIGR00451; unchar_dom_2; 1. DR PROSITE; PS50890; PUA; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000256|HAMAP-Rule:MF_01081}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW tRNA processing {ECO:0000256|HAMAP-Rule:MF_01081}. FT DOMAIN 240 315 PUA. {ECO:0000256|HAMAP-Rule:MF_01081, FT ECO:0000259|PROSITE:PS50890}. FT ACT_SITE 72 72 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_01081}. SQ SEQUENCE 332 AA; 37149 MW; D0F051B0C3FEEBCB CRC64; MTLKQLENLI EVDQDITDDA YGTYYDKRTI EQLLNYGIIL LDKPPGPTSH ETVAWTKRIL KLPKIGHSGT LDPQVSGVLP LGLGEATKAL GVLLFGPKEY HALGRVHSLP SKEKLHEVIE SLTGEIYQKP PQRSAVVRQT RTRTIYEFEV LEQKERLLLT RVLCEAGTYI RKLYYDLGEI LGPGATMIEL RRTRVDQFRE TDGLVTLHEL ANAFALWEEK KDDSKLKSMI QPVEHALSEL KSVVIRDSAI DAMCHGAQLA IPGILQISPS LNKGDIVGIY TQKGEAVALA EATMSGQEIQ DAVKGYAFET KRIIMAPNTY PKKWRTKPSS KE // ID A9A5G6_NITMS Unreviewed; 489 AA. AC A9A5G6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 61. DE RecName: Full=Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; DE Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; DE EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; DE AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; GN Name=purF {ECO:0000256|HAMAP-Rule:MF_01931}; GN OrderedLocusNames=Nmar_0781 {ECO:0000313|EMBL:ABX12677.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12677.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12677.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12677.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the formation of phosphoribosylamine from CC phosphoribosylpyrophosphate (PRPP) and glutamine. CC {ECO:0000256|HAMAP-Rule:MF_01931}. CC -!- CATALYTIC ACTIVITY: 5-phospho-beta-D-ribosylamine + diphosphate + CC L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate CC + H(2)O. {ECO:0000256|HAMAP-Rule:MF_01931, CC ECO:0000256|PIRNR:PIRNR000485}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01931}; CC Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01931}; CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01931, CC ECO:0000256|PIRSR:PIRSR000485-3}; CC Note=Binds 1 [4Fe-4S] cluster per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01931, ECO:0000256|PIRSR:PIRSR000485-3}; CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D- CC ribose 1-diphosphate: step 1/2. {ECO:0000256|HAMAP-Rule:MF_01931, CC ECO:0000256|PIRNR:PIRNR000485}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-2 domain. CC {ECO:0000256|HAMAP-Rule:MF_01931}. CC -!- SIMILARITY: In the C-terminal section; belongs to the CC purine/pyrimidine phosphoribosyltransferase family. CC {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12677.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5G6; -. DR STRING; 436308.Nmar_0781; -. DR EnsemblBacteria; ABX12677; ABX12677; Nmar_0781. DR KEGG; nmr:Nmar_0781; -. DR eggNOG; arCOG00093; Archaea. DR eggNOG; COG0034; LUCA. DR HOGENOM; HOG000033688; -. DR KO; K00764; -. DR OMA; IRHFGVK; -. DR BioCyc; NMAR436308:GI3J-807-MONOMER; -. DR UniPathway; UPA00074; UER00124. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0004044; F:amidophosphoribosyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0009113; P:purine nucleobase biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.2020; -; 1. DR Gene3D; 3.60.20.10; -; 1. DR HAMAP; MF_01931; PurF; 1. DR InterPro; IPR017932; GATase_2_dom. DR InterPro; IPR029055; Ntn_hydrolases_N. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR InterPro; IPR005854; PurF. DR Pfam; PF00156; Pribosyltran; 1. DR PIRSF; PIRSF000485; Amd_phspho_trans; 1. DR SUPFAM; SSF53271; SSF53271; 1. DR SUPFAM; SSF56235; SSF56235; 1. DR PROSITE; PS51278; GATASE_TYPE_2; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_01931}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, KW ECO:0000313|EMBL:ABX12677.1}; KW Glycosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, KW ECO:0000256|PIRNR:PIRNR000485}; KW Iron {ECO:0000256|HAMAP-Rule:MF_01931}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_01931}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_01931}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01931}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01931, KW ECO:0000256|PIRNR:PIRNR000485}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01931, KW ECO:0000256|PIRNR:PIRNR000485}. FT DOMAIN 16 236 Glutamine amidotransferase type-2. FT {ECO:0000256|HAMAP-Rule:MF_01931, FT ECO:0000259|PROSITE:PS51278}. FT ACT_SITE 16 16 For GATase activity. FT {ECO:0000256|PIRSR:PIRSR000485-1}. FT ACT_SITE 16 16 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_01931}. FT METAL 252 252 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_01931, FT ECO:0000256|PIRSR:PIRSR000485-3}. FT METAL 300 300 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_01931}. FT METAL 365 365 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_01931}. FT METAL 366 366 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_01931}. FT METAL 402 402 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_01931, FT ECO:0000256|PIRSR:PIRSR000485-3}. FT METAL 461 461 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_01931, FT ECO:0000256|PIRSR:PIRSR000485-3}. FT METAL 464 464 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_01931, FT ECO:0000256|PIRSR:PIRSR000485-3}. SQ SEQUENCE 489 AA; 53314 MW; 24CEDBD758A00470 CRC64; MDKPQHTLDD KPKENCGVIG IYSLSGANVI PMAIDALRAL QHRGQEAWGL AIPNKPPLKR LGLVSAASSE FKSIAQEYSS PCVIGHVRYS TMGRSSLENA QPLKVKDLCV AHNGTIANVQ ELSNLVGGCS FTPQNASDTL VAAQRLVSLI SENGQMGKAL SVLKNEMVGS YCFTFISDDN SVFAARDPKG FRPMVLGHKE SDDTYIVASE SSAVSAVGAK MQRNVTPGEL IRMSKDGIDT EMFSDDPKRA HCSFEFTYFA HPTSNMEGTN IYVARKNIGR YLAKKFPIKD ADLVIPVPDS ARPAALGYAQ ELGVSFDEGL LKDRYSKKGP LRSFIEPHQT DRVEINRWII PIREIIDGKH VVVIDDSLVR GTSSKAIIKA LRRAGARKIS MVITYPPIKF PCYAGIDFPS QEELATFSNG KDLNDEETID MVRKDIGADF LGYNDAENLA AAVGIPADSM CFTCASGNYD SLGITPEFKS REEIKGEAS // ID A9A2E8_NITMS Unreviewed; 551 AA. AC A9A2E8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 57. DE RecName: Full=Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098}; DE EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098}; DE AltName: Full=Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; GN Name=metG {ECO:0000256|HAMAP-Rule:MF_00098}; GN OrderedLocusNames=Nmar_0963 {ECO:0000313|EMBL:ABX12859.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12859.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12859.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12859.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Is required not only for elongation of protein synthesis CC but also for the initiation of all mRNA translation through CC initiator tRNA(fMet) aminoacylation. {ECO:0000256|HAMAP- CC Rule:MF_00098}. CC -!- CATALYTIC ACTIVITY: ATP + L-methionine + tRNA(Met) = AMP + CC diphosphate + L-methionyl-tRNA(Met). {ECO:0000256|HAMAP- CC Rule:MF_00098}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00098}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00098}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00098}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. MetG type 1 subfamily. {ECO:0000256|HAMAP-Rule:MF_00098}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12859.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E8; -. DR STRING; 436308.Nmar_0963; -. DR EnsemblBacteria; ABX12859; ABX12859; Nmar_0963. DR KEGG; nmr:Nmar_0963; -. DR eggNOG; arCOG00810; Archaea. DR eggNOG; COG0143; LUCA. DR HOGENOM; HOG000200402; -. DR KO; K01874; -. DR OMA; CHEAARG; -. DR BioCyc; NMAR436308:GI3J-991-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004825; F:methionine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006431; P:methionyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 2.20.28.20; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR HAMAP; MF_00098; Met_tRNA_synth_type1; 1. DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd. DR InterPro; IPR023458; Met-tRNA_ligase_1. DR InterPro; IPR014758; Met-tRNA_synth. DR InterPro; IPR015413; Methionyl/Leucyl_tRNA_Synth. DR InterPro; IPR029038; MetRS_Zn. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR Pfam; PF08264; Anticodon_1; 1. DR Pfam; PF09334; tRNA-synt_1g; 1. DR PRINTS; PR01041; TRNASYNTHMET. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF57770; SSF57770; 1. DR TIGRFAMs; TIGR00398; metG; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098, KW ECO:0000256|RuleBase:RU363039, ECO:0000313|EMBL:ABX12859.1}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00098, KW ECO:0000256|RuleBase:RU363039}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00098}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00098, KW ECO:0000256|RuleBase:RU363039, ECO:0000313|EMBL:ABX12859.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00098}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00098, KW ECO:0000256|RuleBase:RU363039}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00098, KW ECO:0000256|RuleBase:RU363039}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00098}. FT DOMAIN 416 512 Anticodon_1. {ECO:0000259|Pfam:PF08264}. FT MOTIF 12 22 "HIGH" region. {ECO:0000256|HAMAP- FT Rule:MF_00098}. FT MOTIF 328 332 "KMSKS" region. {ECO:0000256|HAMAP- FT Rule:MF_00098}. FT METAL 144 144 Zinc. {ECO:0000256|HAMAP-Rule:MF_00098}. FT METAL 147 147 Zinc. {ECO:0000256|HAMAP-Rule:MF_00098}. FT METAL 157 157 Zinc. {ECO:0000256|HAMAP-Rule:MF_00098}. FT METAL 160 160 Zinc. {ECO:0000256|HAMAP-Rule:MF_00098}. FT BINDING 331 331 ATP. {ECO:0000256|HAMAP-Rule:MF_00098}. SQ SEQUENCE 551 AA; 63519 MW; 98C6C1C38484DDB6 CRC64; MNKKAIITSA LPYANGEIHL GHVASTYLPA DVTTRFLKQN GVEAYYVCAS DDFGTPILIQ SEKEGKTPAE YVAHWNKRDY EDFSAFDIDF DYFYKTSSDE NIQFVQDVFK KLNDAGHIYE QEIIQFYCNN DKKFLPDRYV KGTCPYCKAE DQYSDLCESC GRVPEEITNP KCSLCGQPPT KEKTTHYFFK LKNFGEPLSK WLDENDHLQK DVKKYVQNWI KSGLIDWDIT RDITWGVPVP LDDAKDKVFY GWFDNHLAYI STALKFLNDK GIDGKEFWNS ADIYHFIGKD IVYHHYLFLP AMRLGIESEY KLPDYIPTRG HLTLQAKKIS KSRNWYIGLK EFLEYYPADY LRFYLVSINP YSQDDLNFDW DDFTTRINSE LIGNLGNFIN RALGFTKKAF DGNIPDPEDF DEKDSEAEQK IKSLASEVGS LMEQNHLDRA LKKIMEFSSY FNQYFQHKEP WKKGPGTASC VYLSVNAVRS LAIATFPFIP KSAQNIWTQL ALDGKINDQN WNDMSVLGVS SGHTLGDASP LFARVEDADI EKYKKQLGPS E // ID A9A1B5_NITMS Unreviewed; 72 AA. AC A9A1B5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX12750.1}; GN OrderedLocusNames=Nmar_0854 {ECO:0000313|EMBL:ABX12750.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12750.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12750.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12750.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12750.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1B5; -. DR STRING; 436308.Nmar_0854; -. DR EnsemblBacteria; ABX12750; ABX12750; Nmar_0854. DR KEGG; nmr:Nmar_0854; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR OMA; ERTETMV; -. DR BioCyc; NMAR436308:GI3J-881-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 15 69 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 72 AA; 7952 MW; FB2B9B4AEAE0EA98 CRC64; MVRAIILVKS PKKLIAARLR KVDSVSDSFP TSGQFDAVAI IDVEELAQIK DVANQIQKIN GVERTETMVE VQ // ID A9A444_NITMS Unreviewed; 450 AA. AC A9A444; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ABX12228.1}; GN OrderedLocusNames=Nmar_0332 {ECO:0000313|EMBL:ABX12228.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12228.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12228.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12228.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12228.1; -; Genomic_DNA. DR ProteinModelPortal; A9A444; -. DR STRING; 436308.Nmar_0332; -. DR EnsemblBacteria; ABX12228; ABX12228; Nmar_0332. DR KEGG; nmr:Nmar_0332; -. DR eggNOG; arCOG01474; Archaea. DR eggNOG; COG0053; LUCA. DR OMA; IVNFHCR; -. DR BioCyc; NMAR436308:GI3J-347-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR Gene3D; 1.20.1510.10; -; 1. DR Gene3D; 3.30.70.1350; -; 3. DR InterPro; IPR002524; Cation_efflux. DR InterPro; IPR027470; Cation_efflux_CTD. DR InterPro; IPR027469; Cation_efflux_TMD. DR PANTHER; PTHR11562; PTHR11562; 1. DR Pfam; PF01545; Cation_efflux; 1. DR Pfam; PF16916; ZT_dimer; 3. DR TIGRFAMs; TIGR01297; CDF; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 77 95 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 107 131 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 152 171 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 177 196 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 208 282 ZT_dimer. {ECO:0000259|Pfam:PF16916}. FT DOMAIN 291 362 ZT_dimer. {ECO:0000259|Pfam:PF16916}. FT DOMAIN 377 450 ZT_dimer. {ECO:0000259|Pfam:PF16916}. SQ SEQUENCE 450 AA; 49887 MW; 9E953120E09F7CB5 CRC64; MFVQRTKVLQ ISLLAIFSAF LVELVFGLVS NSLALITDSI HALLDSVVTL VLLLAARMAI KPPDAEHTYG HGKIESLGGL IGGIAIFLIA CFFIYESIHR IQSPPPNILP GMFAIIGGLY TIGVDIFRII LLRRSIQKIG GTTLKADFYH AFMDLGSTLV AIIGIVLVSY GLYHGDFFAA LILGGLLAVL SVKLVYKTAL DLTDIISPEL VKNVRDIATS TQGVIGADPI LMRRSGDTTF ADVTISLRGD TSFDRAHEIS SNVEKNIKNK IPNASITIHF EPNWEDVPLD AKILDIAKSV EGVRGVHNVS THKTKGRTFS DLHVMVDREI NLSLAHKISE IIEQKIQENI PEIEHATIHL EPFVTVPENF DLEDKITEEK IKIILEKYSE IKKIGRIVSL NFKNILKIDI DCSFDKELSI EKVHDLTSEI EHIIREEIKN AVITIHPEPE // ID A9A1L6_NITMS Unreviewed; 618 AA. AC A9A1L6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 61. DE SubName: Full=PAS/PAC sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABX13195.1}; GN OrderedLocusNames=Nmar_1299 {ECO:0000313|EMBL:ABX13195.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13195.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13195.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13195.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13195.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1L6; -. DR STRING; 436308.Nmar_1299; -. DR EnsemblBacteria; ABX13195; ABX13195; Nmar_1299. DR KEGG; nmr:Nmar_1299; -. DR eggNOG; arCOG02344; Archaea. DR eggNOG; arCOG02358; Archaea. DR eggNOG; COG0642; LUCA. DR OMA; HLANTAL; -. DR BioCyc; NMAR436308:GI3J-1332-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR001610; PAC. DR InterPro; IPR000014; PAS. DR InterPro; IPR000700; PAS-assoc_C. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF00672; HAMP; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR Pfam; PF13426; PAS_9; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00304; HAMP; 1. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SMART; SM00086; PAC; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55785; SSF55785; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR TIGRFAMs; TIGR00229; sensory_box; 1. DR PROSITE; PS50885; HAMP; 1. DR PROSITE; PS50109; HIS_KIN; 1. DR PROSITE; PS50113; PAC; 1. DR PROSITE; PS50112; PAS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13195.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13195.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 196 219 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 221 273 HAMP. {ECO:0000259|PROSITE:PS50885}. FT DOMAIN 280 324 PAS (PER-ARNT-SIM). FT {ECO:0000259|PROSITE:PS50112}. FT DOMAIN 353 405 PAC (PAS-associated C-terminal). FT {ECO:0000259|PROSITE:PS50113}. FT DOMAIN 418 614 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 618 AA; 70359 MW; EFCD9752A9FA3D0A CRC64; MKIATKLILT YFLISALVIV LGIISLYQFS QLSEPISNEI PLQISELNTK SDLDAHAQLI RYYDEVLTQS ARNYAFTLDT KWNQRYFDTV PLLDDVINYS IEYGDEKEKQ FFQNVHLANT ALIEMETKAI LFADEGNPEQ AIAILESNEY WTQKTIYEQG LRDYVYSRGL DYDEALISSS LTLEQVTNDT EDILNFGTSI VLVFVICAIT VSVFLGFLIP KLITKPIKKL QNATEQIIQG NFDIKTARNS QDDLGQLSRN FQNMIETLKD TTNVKEQLTI QQNLRKALEE SSIVSIIDKN GKITYVNDKF CQVSKYTKNE LIGKRQDILR SRKIHPPGFY KDLWTTISSG KIWHGEICNT AKDGTLFWND TTVIPFLDKN GQILEYVSIR NNITEQKNLT DRLVRAERFS AIGELSARIS HDIRNPLAII KSEFELLKLQ KQIDENDFRR IDTSINRITH QLDDVLEYLR DTPLVYSKFN LTELVTEVID TLQIPSNVKI TIKDDEIFMI GDKDKINIIL VNLIFNSIQA LEDGGDIDII LSKTNSEIVI QIRDSGIGIT IKPIEAIFDP LTTSKQKGTG LGLASVKNLV EQHGGMISVK NNPTTFTIKI PQKEDKSE // ID A9A4N1_NITMS Unreviewed; 321 AA. AC A9A4N1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13009.1}; GN OrderedLocusNames=Nmar_1113 {ECO:0000313|EMBL:ABX13009.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13009.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13009.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13009.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13009.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N1; -. DR STRING; 436308.Nmar_1113; -. DR EnsemblBacteria; ABX13009; ABX13009; Nmar_1113. DR KEGG; nmr:Nmar_1113; -. DR eggNOG; arCOG00545; Archaea. DR eggNOG; COG1236; LUCA. DR HOGENOM; HOG000105288; -. DR KO; K07577; -. DR OMA; NHADFWE; -. DR BioCyc; NMAR436308:GI3J-1144-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.60.15.10; -; 1. DR InterPro; IPR001279; Metallo-B-lactamas. DR InterPro; IPR011108; RMMBL. DR Pfam; PF07521; RMMBL; 1. DR SUPFAM; SSF56281; SSF56281; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 264 308 RMMBL. {ECO:0000259|Pfam:PF07521}. SQ SEQUENCE 321 AA; 35894 MW; 638A280CFFCF4CD1 CRC64; MTKNGILCEV NDRRVCLDPK NADATGINFV SHAHADHLPS KNGGTILSSI ETNEIANLRG FKMENHIESL DDFSLIDSGH ILGAKGLLFD DIFYTGDICT RNRGFLQGAK IPKCKTLITE CTFGLPEFVF PKMEEIQKQV NELISELYGK GIPVILMGYQ LGKAQTITQL FGHWGPLYFH DSVKEMNTLH QKFGVDLKDG MGHSEAQKNG LLDKKPWIMV APMMSAKSKF IQEMKLKYGA VTIGFSGWAQ STKFSFGRRT DYSIPMSDHC DFNELVDMVN QSGAEQVYTI HGFVEEFAEH LKKKLGISAQ PLLENSLDDF T // ID A9A5S4_NITMS Unreviewed; 77 AA. AC A9A5S4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Regulatory protein AsnC/Lrp family {ECO:0000313|EMBL:ABX13079.1}; GN OrderedLocusNames=Nmar_1183 {ECO:0000313|EMBL:ABX13079.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13079.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13079.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13079.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13079.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5S4; -. DR STRING; 436308.Nmar_1183; -. DR EnsemblBacteria; ABX13079; ABX13079; Nmar_1183. DR KEGG; nmr:Nmar_1183; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000225449; -. DR OMA; TITLHWI; -. DR BioCyc; NMAR436308:GI3J-1216-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 14 74 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 77 AA; 8751 MW; AB25E8753F818A07 CRC64; MHKGFILLNC DLGAEEYIVD ELNQMQDVKN AYLTFGAYDV IAEIETEEQD GFEKAIAVIR KLSRVVSTMT LNVIRPE // ID A9A5D6_NITMS Unreviewed; 159 AA. AC A9A5D6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=Nucleotide binding protein, PINc {ECO:0000313|EMBL:ABX12335.1}; GN OrderedLocusNames=Nmar_0439 {ECO:0000313|EMBL:ABX12335.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12335.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12335.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12335.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12335.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0439; -. DR EnsemblBacteria; ABX12335; ABX12335; Nmar_0439. DR KEGG; nmr:Nmar_0439; -. DR eggNOG; arCOG00721; Archaea. DR eggNOG; COG1439; LUCA. DR HOGENOM; HOG000223294; -. DR KO; K07060; -. DR OMA; MQNVAEK; -. DR BioCyc; NMAR436308:GI3J-457-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR029060; PIN_domain-like. DR InterPro; IPR033411; Ribonuclease_PIN. DR Pfam; PF17146; PIN_6; 1. DR SUPFAM; SSF88723; SSF88723; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 159 AA; 17679 MW; 339C791DF662A441 CRC64; MDFRILDASA FYAGVPFRSS NDCYTTSLVY DEIKHIKKNH DALGTLLETN RLKIREPDAE STKTATDVAK NTGDYPQLSK QDLSVIALGI ELEGEIISDD FAISNVARNL GLKISSIMTQ GIKDVGRWVH YCPGCRTNHE SGKECPMCAT PLKRKLLKE // ID A9A3A1_NITMS Unreviewed; 253 AA. AC A9A3A1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 60. DE SubName: Full=Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX12530.1}; GN OrderedLocusNames=Nmar_0634 {ECO:0000313|EMBL:ABX12530.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12530.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12530.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12530.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12530.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3A1; -. DR STRING; 436308.Nmar_0634; -. DR EnsemblBacteria; ABX12530; ABX12530; Nmar_0634. DR KEGG; nmr:Nmar_0634; -. DR eggNOG; arCOG01259; Archaea. DR eggNOG; COG1028; LUCA. DR KO; K00059; -. DR OMA; SENDWRR; -. DR BioCyc; NMAR436308:GI3J-659-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020904; Sc_DH/Rdtase_CS. DR InterPro; IPR002347; SDR_fam. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00061; ADH_SHORT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 253 AA; 27211 MW; F711C3270796F2C9 CRC64; MKLNDKVAIV TGASSDIGKG IAKKFVEEGA KVILIARNLE GLENTRKEIG NEDSTAAMTC DLVDESQTLQ VVNQIMDTYG KIDILVNNAG AINDPIHFHE MQNSEIQKLI NVNLLGVFNM TKAVLTKMAD VKSGSIVNIG SISSERAIPR VHLAVYSATK AAIPMFTKSI AVEYARRNIR CNCVNPGIIN SGSIKPYLDD PQARKVLEER LPLARVGEPE DVANAVAYLA SDEASWVTGT ILNVDGGKTA SEG // ID A9A3V8_NITMS Unreviewed; 85 AA. AC A9A3V8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX13658.1}; GN OrderedLocusNames=Nmar_1762 {ECO:0000313|EMBL:ABX13658.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13658.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13658.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13658.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13658.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V8; -. DR STRING; 436308.Nmar_1762; -. DR EnsemblBacteria; ABX13658; ABX13658; Nmar_1762. DR KEGG; nmr:Nmar_1762; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000225449; -. DR OMA; MMVIEEQ; -. DR BioCyc; NMAR436308:GI3J-1809-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 19 81 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 85 AA; 9596 MW; 795887F50E225C7B CRC64; MPTAYVLLNS DLGSDESIIN EVKQILTDED VTYEVQGVYG VYDIVLKLSS DDAEKLRSII TNKVRKITKV QSTLTMMVIE EQENL // ID A9A2Q7_NITMS Unreviewed; 102 AA. AC A9A2Q7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 60. DE SubName: Full=H+transporting two-sector ATPase C subunit {ECO:0000313|EMBL:ABX13584.1}; GN OrderedLocusNames=Nmar_1688 {ECO:0000313|EMBL:ABX13584.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13584.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13584.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13584.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the V-ATPase proteolipid subunit family. CC {ECO:0000256|RuleBase:RU363060}. CC -!- CAUTION: Lacks conserved residue(s) required for the propagation CC of feature annotation. {ECO:0000256|RuleBase:RU363060}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13584.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Q7; -. DR STRING; 436308.Nmar_1688; -. DR EnsemblBacteria; ABX13584; ABX13584; Nmar_1688. DR KEGG; nmr:Nmar_1688; -. DR eggNOG; arCOG02455; Archaea. DR eggNOG; COG0636; LUCA. DR HOGENOM; HOG000109081; -. DR KO; K02124; -. DR OMA; AMSENAE; -. DR BioCyc; NMAR436308:GI3J-1733-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0045263; C:proton-transporting ATP synthase complex, coupling factor F(o); IEA:InterPro. DR GO; GO:0033179; C:proton-transporting V-type ATPase, V0 domain; IEA:InterPro. DR GO; GO:0015078; F:hydrogen ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR GO; GO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro. DR Gene3D; 1.20.20.10; -; 1. DR InterPro; IPR000454; ATPase_F0-cplx_csu. DR InterPro; IPR002379; ATPase_proteolipid_c-like_dom. DR InterPro; IPR000245; ATPase_proteolipid_csu. DR Pfam; PF00137; ATP-synt_C; 1. DR PRINTS; PR00122; VACATPASE. DR SUPFAM; SSF81333; SSF81333; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrogen ion transport {ECO:0000256|RuleBase:RU003372}; KW Ion transport {ECO:0000256|RuleBase:RU003372}; KW Membrane {ECO:0000256|RuleBase:RU363060}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363060}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363060}; KW Transport {ECO:0000256|RuleBase:RU003372}. FT TRANSMEM 41 66 Helical. {ECO:0000256|RuleBase:RU363060}. FT TRANSMEM 78 100 Helical. {ECO:0000256|RuleBase:RU363060}. FT DOMAIN 40 99 ATP-synt_C. {ECO:0000259|Pfam:PF00137}. SQ SEQUENCE 102 AA; 10065 MW; 6C73ED1F7AB6FC69 CRC64; MKTIVLLLMA AAVISISGST SIAYAAEGDA AASSDSLKIL GAGLAFGLAA FGAGIGLGQV GAAGLAVISE NPALQSKVFI FVGMVESIAI YGIVMMFIIL GQ // ID A9A4T2_NITMS Unreviewed; 370 AA. AC A9A4T2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:ABX13386.1}; DE EC=6.1.1.2 {ECO:0000313|EMBL:ABX13386.1}; GN OrderedLocusNames=Nmar_1490 {ECO:0000313|EMBL:ABX13386.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13386.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13386.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13386.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|RuleBase:RU363036}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13386.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4T2; -. DR STRING; 436308.Nmar_1490; -. DR EnsemblBacteria; ABX13386; ABX13386; Nmar_1490. DR KEGG; nmr:Nmar_1490; -. DR eggNOG; arCOG01887; Archaea. DR eggNOG; COG0180; LUCA. DR HOGENOM; HOG000224742; -. DR KO; K01867; -. DR OMA; FFFSHRD; -. DR BioCyc; NMAR436308:GI3J-1528-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004830; F:tryptophan-tRNA ligase activity; IEA:UniProtKB-EC. DR GO; GO:0006436; P:tryptophanyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR002305; aa-tRNA-synth_Ic. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR002306; Trp-tRNA-ligase. DR PANTHER; PTHR10055; PTHR10055; 1. DR Pfam; PF00579; tRNA-synt_1b; 1. DR PRINTS; PR01039; TRNASYNTHTRP. DR TIGRFAMs; TIGR00233; trpS; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|RuleBase:RU363036, KW ECO:0000313|EMBL:ABX13386.1}; KW ATP-binding {ECO:0000256|RuleBase:RU363036}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|RuleBase:RU363036, ECO:0000313|EMBL:ABX13386.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363036}; KW Protein biosynthesis {ECO:0000256|RuleBase:RU363036}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 370 AA; 42479 MW; 89B406C95DFE15C6 CRC64; MSADDFVVTP WHVEGDIDYD KLIKQFGTQK ISPELLARIQ KITGEDHFML RRGIFFSHRE MNRILDDYEK GNKFFLYTGR GPSGHTHIGH LVPWVFAKWL QEKFDVNMYF QLTDDEKFFS KPNLTLEETK NFAYENALDF IALGFKPEKT KIIINTRNIQ TLYPIAAQVA KKINFSNTKA TFGFTNETNL GMIFYTSLQS APCFIEDKPV LIPLGVDQDP HFRLTRDIAP KIGKEKPALI HNIMIPALEG PGGKMSASDE NGTVYTTDAP NVVKKKINKY AFSGGQPDLE QHRKLGGNPD IDVSYQYLRI FFEPDDNKLK SIYEDYKSGK LLSGELKAIL IEKMNEFLAV HQENREKAKD KIDEFLFENK // ID A9A2X7_NITMS Unreviewed; 256 AA. AC A9A2X7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12105.1}; GN OrderedLocusNames=Nmar_0209 {ECO:0000313|EMBL:ABX12105.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12105.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12105.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12105.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12105.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0209; -. DR EnsemblBacteria; ABX12105; ABX12105; Nmar_0209. DR KEGG; nmr:Nmar_0209; -. DR eggNOG; arCOG08023; Archaea. DR eggNOG; ENOG4110ZSP; LUCA. DR HOGENOM; HOG000104984; -. DR OMA; TCGSTIA; -. DR BioCyc; NMAR436308:GI3J-213-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR InterPro; IPR011033; PRC_barrel-like. DR InterPro; IPR026870; Zinc_ribbon_dom. DR Pfam; PF13240; zinc_ribbon_2; 1. DR SUPFAM; SSF50346; SSF50346; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 233 255 zinc_ribbon_2. FT {ECO:0000259|Pfam:PF13240}. SQ SEQUENCE 256 AA; 27695 MW; 37A68400168B7C1D CRC64; MSSELRIKKL RGSGGYVMAR VTDEQQMKGN LGGPDLFLAP IGRLDADKIS KHFCNTCEKE FEGAPKIEFE NPNEEVAENL ILAERGQYIC NTCEASIAEY REFKKQDEAG DVGNAKPLEP QTEVAPQVET PQEPTVESVP QPVEEPQVQS TQETATQPSP ATSVSSIEGR AVYDENANKI GIAKQVGIDS TQSMVLVITQ NDGSEGSIPW KSIKKVGEVI LLGNPEESAP LGKCSSCGFV NKEGSKFCEE CGTPLQ // ID A9A4B3_NITMS Unreviewed; 336 AA. AC A9A4B3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Peptidase M10A and M12B matrixin and adamalysin {ECO:0000313|EMBL:ABX12602.1}; GN OrderedLocusNames=Nmar_0706 {ECO:0000313|EMBL:ABX12602.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12602.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12602.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12602.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12602.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4B3; -. DR STRING; 436308.Nmar_0706; -. DR EnsemblBacteria; ABX12602; ABX12602; Nmar_0706. DR KEGG; nmr:Nmar_0706; -. DR eggNOG; arCOG04994; Archaea. DR eggNOG; COG5549; LUCA. DR HOGENOM; HOG000023866; -. DR BioCyc; NMAR436308:GI3J-731-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031012; C:extracellular matrix; IEA:InterPro. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 3.40.390.10; -; 1. DR InterPro; IPR024079; MetalloPept_cat_dom. DR InterPro; IPR001818; Pept_M10_metallopeptidase. DR InterPro; IPR021190; Pept_M10A. DR Pfam; PF00413; Peptidase_M10; 1. DR PRINTS; PR00138; MATRIXIN. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 86 108 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 272 307 Peptidase_M10. FT {ECO:0000259|Pfam:PF00413}. FT COILED 23 50 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 336 AA; 37678 MW; A95B4B849D475157 CRC64; MVANTFAKKD YINALDEIEN QQFQLLQRKA KFLQNELTKT SSQINDFEID SLNDLTHDSS FKNNKKHNQN SLKLNFDTKI ISIKHLVLFA SFVFFSIMTP FLINTYFLHD DIVADAVVLE SPMKTKFLIE NLRGDTIDTV KSWRILDGDA LNVNLINGDI LTSEQHNAVL KVINSTDSIL IDDHIINRGP PGSESIYFLG WAGAMEEAAK TDTAYTVPTT FNIFQSENGE GQIIINFSNL IDTDGFTGYT KSVIQDGEIL KSYITIYDVD NLDASELATI VRHEFGHALG LGHSTDPEDL MAPTILTEFP YISECNVDAM RVLYNGHESG MAVCKK // ID A9A644_NITMS Unreviewed; 374 AA. AC A9A644; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13522.1}; GN OrderedLocusNames=Nmar_1626 {ECO:0000313|EMBL:ABX13522.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13522.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13522.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13522.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13522.1; -; Genomic_DNA. DR ProteinModelPortal; A9A644; -. DR STRING; 436308.Nmar_1626; -. DR EnsemblBacteria; ABX13522; ABX13522; Nmar_1626. DR KEGG; nmr:Nmar_1626; -. DR eggNOG; arCOG08791; Archaea. DR eggNOG; ENOG411257X; LUCA. DR HOGENOM; HOG000109940; -. DR OMA; LGPFPDW; -. DR BioCyc; NMAR436308:GI3J-1671-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.20.20.80; -; 2. DR InterPro; IPR013781; Glyco_hydro_catalytic_dom. DR InterPro; IPR017853; Glycoside_hydrolase_SF. DR SUPFAM; SSF51445; SSF51445; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 374 AA; 41998 MW; 54415782573F1B58 CRC64; MDKKILGVGI GVAVVIAIIA GVLSIPSDSN PEVTPVKTNE KIGLVINSPN QSVTLQELDE IYSTASESGI GRSNVYLFWN LIEPEHREYN WQYSDALMSF NQKNDLKVTL YFSIINGETL GPFPDWIGKP PIQSLNEDRV VSVLDAILSR YHIVDTVILA GETESQFRYY EQNIPPYKEL FVGVYDKIKE KHPDVKIGNA FALHQVLNKD LQNIVTDLDV GDFVAFSYSP VDTVGDMVKT PQQAKEDLEQ IIDLAGDRNA AIFEISWSTS DFVGGSEESQ TEFLEKSFEF YAENESELEF FTWYRQNDKP EGTCAFEVQE VGEDKLTVGG SGFGSSEHVI ERLDHYVCNA GLFDENGNPK SGWNEFKNQI QMLN // ID A9A278_NITMS Unreviewed; 89 AA. AC A9A278; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12789.1}; GN OrderedLocusNames=Nmar_0893 {ECO:0000313|EMBL:ABX12789.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12789.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12789.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12789.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12789.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12789; ABX12789; Nmar_0893. DR KEGG; nmr:Nmar_0893; -. DR eggNOG; ENOG4102UAA; Archaea. DR eggNOG; ENOG4110ZJJ; LUCA. DR BioCyc; NMAR436308:GI3J-921-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 89 AA; 9969 MW; 39038D27478733FD CRC64; MTVQGKSVLT KNFSVLKHNN SCLLITCKGI KKNGIHEKCP FIHEGDWGDL ELTEHQNFHD AQESQNYSWL GFDTSQAIGK FSGRDGKSS // ID A9A4E4_NITMS Unreviewed; 182 AA. AC A9A4E4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:ABX12633.1}; GN OrderedLocusNames=Nmar_0737 {ECO:0000313|EMBL:ABX12633.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12633.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12633.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12633.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12633.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4E4; -. DR STRING; 436308.Nmar_0737; -. DR EnsemblBacteria; ABX12633; ABX12633; Nmar_0737. DR KEGG; nmr:Nmar_0737; -. DR eggNOG; arCOG02846; Archaea. DR eggNOG; COG0484; LUCA. DR OMA; EKYHSDW; -. DR BioCyc; NMAR436308:GI3J-763-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.10.287.110; -; 1. DR InterPro; IPR001623; DnaJ_domain. DR Pfam; PF00226; DnaJ; 1. DR PRINTS; PR00625; JDOMAIN. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR PROSITE; PS50076; DNAJ_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Stress response {ECO:0000313|EMBL:ABX12633.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 56 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 117 180 J. {ECO:0000259|PROSITE:PS50076}. SQ SEQUENCE 182 AA; 21615 MW; D9E5DCC98C61709B CRC64; MKIASIFLIS LVLLLVQTSY AQEKELDMEL EISDEEKIII FGGFSIAVIG LFLFLARDVI LRRKTTYDKE ELESKKDKTN EKYHSDWGDD YEEIGTRRNT IKDKEFREAA RNDELPNYYE ILRVSRDATQ EEIKKSFREL AKKTHPDKTK EDSEEEMSKL NKAYEILSDE ESRERYDKYF VD // ID A9A3A0_NITMS Unreviewed; 193 AA. AC A9A3A0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE RecName: Full=UPF0215 protein Nmar_0633 {ECO:0000256|HAMAP-Rule:MF_00582}; GN OrderedLocusNames=Nmar_0633 {ECO:0000313|EMBL:ABX12529.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12529.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12529.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12529.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the UPF0215 family. {ECO:0000256|HAMAP- CC Rule:MF_00582}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12529.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3A0; -. DR STRING; 436308.Nmar_0633; -. DR EnsemblBacteria; ABX12529; ABX12529; Nmar_0633. DR KEGG; nmr:Nmar_0633; -. DR eggNOG; arCOG00928; Archaea. DR eggNOG; COG1628; LUCA. DR HOGENOM; HOG000224579; -. DR KO; K09120; -. DR OMA; IAPAWYN; -. DR BioCyc; NMAR436308:GI3J-658-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR HAMAP; MF_00582; UPF0215; 1. DR InterPro; IPR002802; DUF99. DR Pfam; PF01949; DUF99; 1. DR PIRSF; PIRSF006380; UCP006380; 1. DR ProDom; PD016744; DUF99; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 193 AA; 21633 MW; B8D6F09D9463A894 CRC64; MRSLHLEKKG LRGLAIAESF RQNSTKSVLA GVVMRRDFVI DGFVFGNATL EGNDATDAIL RMCDDLKRPD ISYVLISGLI VSMYNIIDIK KLFGILKIPI IGVSYHDSLG IEDSLKHHFP DSFESKLKDY EKLGQREKIT LSTSHDVYVR KEGCTLTEVK HLLDDLTLHG SISEPIRVSQ LLAKTLLEKG LSF // ID A9A3L4_NITMS Unreviewed; 163 AA. AC A9A3L4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12946.1}; GN OrderedLocusNames=Nmar_1050 {ECO:0000313|EMBL:ABX12946.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12946.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12946.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12946.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12946.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1050; -. DR EnsemblBacteria; ABX12946; ABX12946; Nmar_1050. DR KEGG; nmr:Nmar_1050; -. DR eggNOG; arCOG03116; Archaea. DR eggNOG; COG1430; LUCA. DR HOGENOM; HOG000108180; -. DR KO; K09005; -. DR OMA; LWMLNMQ; -. DR BioCyc; NMAR436308:GI3J-1081-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR003795; DUF192. DR Pfam; PF02643; DUF192; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 163 AA; 18271 MW; 80227473A28F229B CRC64; MTTRAQALIP ISIAAVIIGV VGLMSIPEES KLESVEFPRG TIKVDDVPLE VQIADNEPRR VRGLMFQDQL PYDQGMIFVF DESGLYSLWM LNMQFSLDMM WFDENGKMVH MEQDVPPCKA ALEIATCQSV VPENEALYVL EVTAGFIEQN NITKDSVLTI ISI // ID A9A3F5_NITMS Unreviewed; 354 AA. AC A9A3F5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 44. DE SubName: Full=Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit {ECO:0000313|EMBL:ABX12887.1}; GN OrderedLocusNames=Nmar_0991 {ECO:0000313|EMBL:ABX12887.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12887.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12887.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12887.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12887.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3F5; -. DR STRING; 436308.Nmar_0991; -. DR EnsemblBacteria; ABX12887; ABX12887; Nmar_0991. DR KEGG; nmr:Nmar_0991; -. DR eggNOG; arCOG06344; Archaea. DR eggNOG; COG3243; LUCA. DR HOGENOM; HOG000005371; -. DR KO; K03821; -. DR OMA; YLIDWGY; -. DR BioCyc; NMAR436308:GI3J-1019-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016746; F:transferase activity, transferring acyl groups; IEA:InterPro. DR GO; GO:0042619; P:poly-hydroxybutyrate biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.1820; -; 1. DR InterPro; IPR029058; AB_hydrolase. DR InterPro; IPR000073; AB_hydrolase_1. DR InterPro; IPR024501; DUF3141. DR InterPro; IPR010125; PHA_synth_III_C. DR Pfam; PF00561; Abhydrolase_1; 1. DR Pfam; PF11339; DUF3141; 1. DR SUPFAM; SSF53474; SSF53474; 1. DR TIGRFAMs; TIGR01836; PHA_synth_III_C; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 68 208 AB_hydrolase_1. FT {ECO:0000259|Pfam:PF00561}. SQ SEQUENCE 354 AA; 40590 MW; CD5557C6F0448350 CRC64; MQSESKVDPK IIEEILKFSK NVIEAPKLVA APDEISLEVT PHDIVQQMDK TRLLHYKPIT EKQHKTPLLI SYALINRFHI LDIQPEKSWV RNLLQQGFDV YMLDWGTPTS MDKYLDFDDY VNGYLDAYVE YIKNESSTEK ISLQGYCTGA TIATTYASLH PESVKNYIAT APVIDGWRDT TVISNLAKHM DVDKMVEIIG NMPPEFMYYA FSVLKPFEQG IEKYVNFFKN IENKKFVDSF LRVEKWLGDT PPIPGELFKQ WIKDIYQDNL LIQNKMHVEG QLVDLKKIDM PIFTQVAVGD HLVSPECSMP LHYAVGSEDK TLRMYPTGHV GMIASSLSQK KVLPELGSWL AERS // ID A9A512_NITMS Unreviewed; 484 AA. AC A9A512; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Sodium/hydrogen exchanger {ECO:0000313|EMBL:ABX11921.1}; GN OrderedLocusNames=Nmar_0021 {ECO:0000313|EMBL:ABX11921.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11921.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11921.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11921.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11921.1; -; Genomic_DNA. DR ProteinModelPortal; A9A512; -. DR STRING; 436308.Nmar_0021; -. DR EnsemblBacteria; ABX11921; ABX11921; Nmar_0021. DR KEGG; nmr:Nmar_0021; -. DR eggNOG; arCOG01962; Archaea. DR eggNOG; COG3263; LUCA. DR HOGENOM; HOG000110464; -. DR KO; K11105; -. DR OMA; NAEAYPQ; -. DR BioCyc; NMAR436308:GI3J-21-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015299; F:solute:proton antiporter activity; IEA:InterPro. DR InterPro; IPR006153; Cation/H_exchanger. DR Pfam; PF00999; Na_H_Exchanger; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003721}. FT TRANSMEM 49 70 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 82 101 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 107 125 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 137 158 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 164 188 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 200 225 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 237 258 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 265 283 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 289 307 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 328 346 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 352 372 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 384 405 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 417 434 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 62 429 Na_H_Exchanger. FT {ECO:0000259|Pfam:PF00999}. SQ SEQUENCE 484 AA; 52165 MW; D9B60B4487EEC119 CRC64; MNPIILSILN LIRGQSGEIP LSNFDSSFIF EKLTEIENSV GTLSSQDGFI APAHVILLAA GVVIFLGVAG EAFFKRTGIP DVAFLMVLGV ILGPVLGLIQ PEAVLQVVPY FAALALIIIM FDGGLNLDIK HVIRTAHFSS TLAILGFILS VAMISIAAHY ALGWLWLESI LLGSIVGGSS SAIVFGLVRN VKISDETKSM LSFESALTDI LATIVAFILF EAVLAGTFDL QILQETIGRA VVVGLVLGFG VGIPWMYVST KLGNAQHGYM LTLGILFVLF FLANSFGESG ALTALVFGLM LGNKNHLARI LRFKLPKIEM DDPTHNQLTF LVRAFFFVFV GLMASFGQIE YMIFGILITI AVFFGRGIVA RITLTKRFSK LDKAVTNAMI PRGLAAAVLA TYPITMGLPN AEAYPQIIFF IILSSVIITT IGMGRSKNIP PPEPVKGGFV KPPEDPDDTS NDESEEIVDE SKEGGFVKKV NSQE // ID A9A2K8_NITMS Unreviewed; 126 AA. AC A9A2K8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13247.1}; GN OrderedLocusNames=Nmar_1351 {ECO:0000313|EMBL:ABX13247.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13247.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13247.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13247.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13247.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13247; ABX13247; Nmar_1351. DR KEGG; nmr:Nmar_1351; -. DR eggNOG; arCOG10581; Archaea. DR eggNOG; ENOG41110V7; LUCA. DR OMA; FEYSTIG; -. DR BioCyc; NMAR436308:GI3J-1385-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.20.120.350; -; 1. DR InterPro; IPR027359; Channel_four-helix_dom. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 45 63 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 78 97 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 126 AA; 14767 MW; 7D7C468AF5BADA7D CRC64; MIYKILDFAI IAIGLMFFAG IVSFEYSTIG LSEPILSLPY ESKQFFDFLI WPLIILLVFD LYFKYNKVRD PKKFVKKYWI DIVMLTLIPI FSAFKFLKIG ISIIKKLKTV KMGTKVAHKT KKSLRK // ID A9A4S1_NITMS Unreviewed; 322 AA. AC A9A4S1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 48. DE SubName: Full=Vitamin B6 biosynthesis protein {ECO:0000313|EMBL:ABX13375.1}; GN OrderedLocusNames=Nmar_1479 {ECO:0000313|EMBL:ABX13375.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13375.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13375.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13375.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13375.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4S1; -. DR SMR; A9A4S1; 22-299. DR STRING; 436308.Nmar_1479; -. DR EnsemblBacteria; ABX13375; ABX13375; Nmar_1479. DR KEGG; nmr:Nmar_1479; -. DR eggNOG; arCOG04075; Archaea. DR eggNOG; COG0214; LUCA. DR HOGENOM; HOG000227586; -. DR KO; K06215; -. DR OMA; MVGINES; -. DR BioCyc; NMAR436308:GI3J-1516-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0042823; P:pyridoxal phosphate biosynthetic process; IEA:InterPro. DR GO; GO:0042819; P:vitamin B6 biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 2. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR001852; PdxS/SNZ. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF01680; SOR_SNZ; 1. DR PIRSF; PIRSF029271; Pdx1; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR PROSITE; PS51129; PDXS_SNZ_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 322 AA; 34914 MW; 73B07C4E7C9AF093 CRC64; MLPLSGERKD AKGIISEKLD SGDVIRGSST LKRGFAHMLK NGVVMDVTNV EQAKIAEEAG AVSVMVLDKL PSDVRKAGGV ARTASIRIIE EIMDSVTIPV MAKCRIGHVN EALVLQETDV DMIDESEVLT PADELRHIWK WDMTTPVVNG ARSLAEALRR IEEGAAMIRT KGEPGTGNVA EAITHIKKVN DELRTIKSMY DSGDNQDLVR MAREFKVSYD IVEQTAKLGR LPVVNFAAGG IATPADAAYL MSLGCDGIFV GSGIFAADDA AERARAIVLA TTFWNEADKV KEAQKMIDER QSMLGLDVKT LELRMQDRGG SA // ID A9A1N7_NITMS Unreviewed; 127 AA. AC A9A1N7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Putative transcriptional regulator, CopG family {ECO:0000313|EMBL:ABX13552.1}; GN OrderedLocusNames=Nmar_1656 {ECO:0000313|EMBL:ABX13552.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13552.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13552.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13552.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13552.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1N7; -. DR STRING; 436308.Nmar_1656; -. DR EnsemblBacteria; ABX13552; ABX13552; Nmar_1656. DR KEGG; nmr:Nmar_1656; -. DR eggNOG; arCOG01008; Archaea. DR eggNOG; COG0864; LUCA. DR HOGENOM; HOG000102781; -. DR KO; K07722; -. DR OMA; HNHVGDH; -. DR BioCyc; NMAR436308:GI3J-1701-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.1220.10; -; 1. DR InterPro; IPR013321; Arc_rbn_hlx_hlx. DR InterPro; IPR002145; CopG. DR InterPro; IPR010985; Ribbon_hlx_hlx. DR InterPro; IPR014864; TF_NikR_Ni-bd_C. DR Pfam; PF08753; NikR_C; 1. DR Pfam; PF01402; RHH_1; 1. DR SUPFAM; SSF47598; SSF47598; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 40 RHH_1. {ECO:0000259|Pfam:PF01402}. FT DOMAIN 61 125 NikR_C. {ECO:0000259|Pfam:PF08753}. SQ SEQUENCE 127 AA; 14169 MW; C033A64CD109A8E5 CRC64; MPIVSISLND EILSELDKLQ SSMGFTGRSE AIRAGIRAFV SEEKQKADLS GNIHAILLVV HNDEFDHVVS GITHNFEDLI TTHLHSKIDK EKCMELFVID GDAEKVSTMT KDFQINKNMD TVKLVAL // ID A9A2X2_NITMS Unreviewed; 488 AA. AC A9A2X2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13649.1}; GN OrderedLocusNames=Nmar_1753 {ECO:0000313|EMBL:ABX13649.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13649.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13649.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13649.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13649.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1753; -. DR EnsemblBacteria; ABX13649; ABX13649; Nmar_1753. DR KEGG; nmr:Nmar_1753; -. DR eggNOG; arCOG08764; Archaea. DR eggNOG; ENOG410XZUZ; LUCA. DR HOGENOM; HOG000109014; -. DR BioCyc; NMAR436308:GI3J-1800-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 488 AA; 53446 MW; C8DFA9C4D5C42C25 CRC64; MLRKLIAILI IGIFATSIIT ASSLSDQFAD AGSRKKIHFT QTFTSSQDPG QGHENHQLSL ILSPNQGTIY DGSMTFTSSE PVQIVVLHEI NSDDAKGQPT WSIDGNTVYG LSLIDLQEKS GSFEFTGAAL GLHSPNSKQF TSTVSVDGWI RGQPTEVIMQ KIELEKEEPM SLLSRANVPA TIPIHEGIYG GEKVLYIITD GSDEEYAREL SEKQEWNVEL APVLADVPED ALQKIFVFKN GVKGEGLYGF QNEIFSSTPQ QESEYSALSS VIEVTWKTGQ KEIVFESAND VIAAEENGRI EFDETGVVLN TPHIVWPGGQ MQVRADQEIA DDMPYGGGQI TEINEEEMTV TFVAHRGWGP DGRTIYYIVT DATPFGPAEM MGVTSSPTSA NLIAHSGAVD LFQFKNGIKG TGPLGFQAGI AAASLGDENY SPMWRIYLIE WNDSENAKIL ETKSDIDSFR ADDLITVSIT RPTNSDHIVN CPFIDPFQ // ID A9A371_NITMS Unreviewed; 210 AA. AC A9A371; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12500.1}; GN OrderedLocusNames=Nmar_0604 {ECO:0000313|EMBL:ABX12500.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12500.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12500.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12500.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12500.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12500; ABX12500; Nmar_0604. DR KEGG; nmr:Nmar_0604; -. DR BioCyc; NMAR436308:GI3J-628-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 210 AA; 24490 MW; 458E56FA67BA68F1 CRC64; MKSNTTTKND SISNQTDDSW IQYKNNLHIQ KNKISKEFRC ITCKLSLGEN QGGAGGHSKS KHKMTLSGEP IQTKSFHDSD SDKNPAPSYI DEIDEELLRR RTATQDFSDD TVESMTLLDV YKDVASGAAK ITKDPELQFE YGQLKLRRII PPDWDFRMWI KMTVDLFNRI HKINIQFTQN LDELSPEQLE WHKLVYQENL EWEYEQEPTS // ID A9A3G2_NITMS Unreviewed; 513 AA. AC A9A3G2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12894.1}; GN OrderedLocusNames=Nmar_0998 {ECO:0000313|EMBL:ABX12894.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12894.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12894.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12894.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12894.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0998; -. DR EnsemblBacteria; ABX12894; ABX12894; Nmar_0998. DR KEGG; nmr:Nmar_0998; -. DR BioCyc; NMAR436308:GI3J-1026-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 351 378 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 513 AA; 57263 MW; 29223723888B834F CRC64; MTLTFHENNS NSILNKNVTH TRKFSLMFLA SFLAVLLLTS IVASVPFASA EIDDANSEKL EKIEQGFKKI RSSIAEQRTD NVSSMSFEFR TIGNALVGIQ PTLSLEEQEN LISEFNQLLT MYKKQTTKNE QVSKHFSSHE KQILQKLTQH ANNVNSKLTK SVDKQKKSDF IKSEILNLKE IKEYRKIFAK INQQEYKGTG FASKVTDKVF ALTINELIQN ERWNMLIKAL EHQAKLQPSK RTDLLETRDA IESLIKKQQN KNSQNSKQSY VVNTPTPTEP STPTEPSTPT EPSTPTEPST PTEPSTPTEP STPTEPSTPT EPSTPTEPST PTEPSTPTEP STPTEPSTPL TKAQKKALNQ LNNAIKNEQK REVQYQIAIE KTLAAKTAVD LAKERLDKAP LGSKEEQRAI KALEKRQNTL LKFVTFEENK KEKLDIANQR VQSAQTQHDT VFQILSTPVP DNLPTQNASE NNNDEFDTSN DSQNSEIINE PVISDSGDSD SGDSDSGDSD SNN // ID A9A3H1_NITMS Unreviewed; 422 AA. AC A9A3H1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12903.1}; GN OrderedLocusNames=Nmar_1007 {ECO:0000313|EMBL:ABX12903.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12903.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12903.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12903.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12903.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3H1; -. DR STRING; 436308.Nmar_1007; -. DR EnsemblBacteria; ABX12903; ABX12903; Nmar_1007. DR KEGG; nmr:Nmar_1007; -. DR eggNOG; arCOG00626; Archaea. DR eggNOG; COG1253; LUCA. DR HOGENOM; HOG000062297; -. DR OMA; QDRDMLG; -. DR BioCyc; NMAR436308:GI3J-1035-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0016614; F:oxidoreductase activity, acting on CH-OH group of donors; IEA:InterPro. DR Gene3D; 3.30.465.10; -; 1. DR InterPro; IPR000644; CBS_dom. DR InterPro; IPR016169; CO_DH_flavot_FAD-bd_sub2. DR InterPro; IPR002550; DUF21. DR InterPro; IPR016166; FAD-bd_2. DR InterPro; IPR005170; Transptr-assoc_dom. DR Pfam; PF00571; CBS; 2. DR Pfam; PF03471; CorC_HlyC; 1. DR Pfam; PF01595; DUF21; 1. DR SMART; SM00116; CBS; 2. DR SMART; SM01091; CorC_HlyC; 1. DR SUPFAM; SSF56176; SSF56176; 1. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 92 109 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 121 143 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 204 265 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 270 327 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 422 AA; 46993 MW; 9D05E1FED3C222AF CRC64; MSLEYQLAAL AGLIGLSGFF SGLEVALVGT SQATIERLVK DNVKGAKSLQ KLKANPGWMM SSVNLGNNLV NIGSASLATI VAIEIFGDNG VGIAVGIMTF LVIIFGEVTP KTYCNANATK VALRCSRILL TFSYVFYPAV WILEKITRGI IKITGSDYQP PALTEDEIKG IIAQGHRDEA LEKSERDLLY GALKFDDTVI RSVMMPRTRM FSLHGDMELI TAADKIHKSG HSRIPIYGKD HDDILGILHV RDILKHLKDK ELQKMKLREF VREPIYVSQE KRMSELLKQM QAKNTHMAIV VDEFGGVEGL VTLEDLIEEI VGEIHDETDL KSPHYQKINN DVILANGEIE IDEINEIFKS NLPRGDDYST LNGLLHEKLH DIPQVGNVIN IDALEIKVEK VSKNKPVSLR ITKKKPLEEN LD // ID A9A536_NITMS Unreviewed; 134 AA. AC A9A536; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11945.1}; GN OrderedLocusNames=Nmar_0045 {ECO:0000313|EMBL:ABX11945.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11945.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11945.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11945.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11945.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0045; -. DR EnsemblBacteria; ABX11945; ABX11945; Nmar_0045. DR KEGG; nmr:Nmar_0045; -. DR eggNOG; arCOG10514; Archaea. DR eggNOG; ENOG4110ZVB; LUCA. DR OMA; AIYRFEL; -. DR BioCyc; NMAR436308:GI3J-45-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 134 AA; 15757 MW; D648F50BF9A5D270 CRC64; MVKKKKEDEI PEWVTDEIQN AKFKKPEELK KSGYILEFYY EDNKIDVQLY DAVEDGRHIV TMDVPKSVKI DDLLKGEVYE FVFDQHKAPL SKKVSEYLEK EKEIDMNAIY QFELKSLELL DVGSNEAADD DEEE // ID A9A549_NITMS Unreviewed; 240 AA. AC A9A549; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Precorrin-2 C20-methyltransferase {ECO:0000313|EMBL:ABX11958.1}; GN OrderedLocusNames=Nmar_0058 {ECO:0000313|EMBL:ABX11958.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11958.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11958.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11958.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11958.1; -; Genomic_DNA. DR ProteinModelPortal; A9A549; -. DR STRING; 436308.Nmar_0058; -. DR EnsemblBacteria; ABX11958; ABX11958; Nmar_0058. DR KEGG; nmr:Nmar_0058; -. DR eggNOG; arCOG00648; Archaea. DR eggNOG; COG2243; LUCA. DR HOGENOM; HOG000291190; -. DR KO; K03394; -. DR OMA; ATMANQK; -. DR BioCyc; NMAR436308:GI3J-58-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030788; F:precorrin-2 C20-methyltransferase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.1010.10; -; 1. DR InterPro; IPR000878; 4pyrrol_Mease. DR InterPro; IPR014777; 4pyrrole_Mease_sub1. DR InterPro; IPR012382; CobI/CbiL. DR InterPro; IPR006364; CobI/CbiL/CobIJ_dom. DR Pfam; PF00590; TP_methylase; 1. DR PIRSF; PIRSF036427; Precrrn-2_mtase; 1. DR SUPFAM; SSF53790; SSF53790; 1. DR TIGRFAMs; TIGR01467; cobI_cbiL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX11958.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11958.1}. FT DOMAIN 4 222 TP_methylase. {ECO:0000259|Pfam:PF00590}. SQ SEQUENCE 240 AA; 26523 MW; AD4609517A3D6DEF CRC64; MPGLIGIGVG PGDPELLTVK AVKAIQDADI IMCPASKEDR PSIALSVVDS LIDKSKNQEI VKLIFPMTKD KDVLEETWKR NAKIMAETVQ SGKNVVYLTV GDPFLYSTWI YMHKDLTEKY PEMNISVIPG IVSMFTFASK VGVSIAEGAE KVAIIPSCYD LSSVKEIAKN SESMIFLKDG RYFDQVIDVL KESGFPDNSI FAIGQDLGTE NEIIRKMTLG EVNDDTLTTK YFSILVVKRV // ID A9A1T1_NITMS Unreviewed; 454 AA. AC A9A1T1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 43. DE SubName: Full=Sulfatase {ECO:0000313|EMBL:ABX12052.1}; GN OrderedLocusNames=Nmar_0154 {ECO:0000313|EMBL:ABX12052.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12052.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12052.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12052.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12052.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T1; -. DR STRING; 436308.Nmar_0154; -. DR EnsemblBacteria; ABX12052; ABX12052; Nmar_0154. DR KEGG; nmr:Nmar_0154; -. DR eggNOG; arCOG02785; Archaea. DR eggNOG; COG3119; LUCA. DR BioCyc; NMAR436308:GI3J-156-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008484; F:sulfuric ester hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.720.10; -; 2. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR000917; Sulfatase_N. DR Pfam; PF00884; Sulfatase; 1. DR SUPFAM; SSF53649; SSF53649; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 328 Sulfatase. {ECO:0000259|Pfam:PF00884}. SQ SEQUENCE 454 AA; 52155 MW; 86A876E373CBF1B9 CRC64; MKPNILFLVV DSLRSDKFYG ESKTSITPNL DSLLENGVYF SQAISSVPST SPSMGSIFTG LFPIKIGMGP ESYEKLNPNV STFIEHFKKN GYSTFATTSE INSFLGLTED FDLTLQQTSH NNYFSLFSGL GEKITEKLRT MKKEPWFFYI HINDLHQPVI VPEKYSEEKF GITDYEKMLS AIDFWIGKFF EQIDFSKTLV VLTADHGEYV RSLQIDGKMI NLESSSSEKT LWKLGNKIPN FLYGPKRKLS SILQKTRDKN RQKKIEELDL SEYEKRVLSM SRMSSGSHVF DDVLKVPLVF KGFPIKNPKL ISQQVGLLDI FPTITDLIEI PKINAKIDGN SLYPLIQNEK IDEKPLFIQS MPSISDDNLI LVGIRTNSFK YFREKNNKKK NKLFDLANDP LEEKDISSQK PEIVLKMEKI LQEYLITENN FSPDSLQNDE RKKVEDELKK LGYL // ID A9A4M5_NITMS Unreviewed; 142 AA. AC A9A4M5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13003.1}; GN OrderedLocusNames=Nmar_1107 {ECO:0000313|EMBL:ABX13003.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13003.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13003.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13003.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13003.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13003; ABX13003; Nmar_1107. DR KEGG; nmr:Nmar_1107; -. DR eggNOG; arCOG10575; Archaea. DR eggNOG; ENOG4111037; LUCA. DR BioCyc; NMAR436308:GI3J-1138-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 142 AA; 17069 MW; BF9623ABB60FCA3A CRC64; MAVMDEFDEE REEATNQVLD VLEEWGGESK FIWFRELHRI TDIDKGLLRN ILNELKKSRE IKEMHGTNNR IFFCLRKYYI KCRDVEFRFK GKEIMLRDGS KTKIIAGSTK ATERTRKRLE KQRNKRRAKS FTKAKSKRPH KS // ID A9A5C2_NITMS Unreviewed; 149 AA. AC A9A5C2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=30S ribosomal protein S9 {ECO:0000256|RuleBase:RU003817}; GN OrderedLocusNames=Nmar_0425 {ECO:0000313|EMBL:ABX12321.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12321.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12321.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12321.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S9P family. CC {ECO:0000256|RuleBase:RU003815}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12321.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C2; -. DR STRING; 436308.Nmar_0425; -. DR EnsemblBacteria; ABX12321; ABX12321; Nmar_0425. DR KEGG; nmr:Nmar_0425; -. DR eggNOG; arCOG04243; Archaea. DR eggNOG; COG0103; LUCA. DR HOGENOM; HOG000019803; -. DR KO; K02996; -. DR OMA; YYQKFVD; -. DR BioCyc; NMAR436308:GI3J-443-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 3.30.230.10; -; 1. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR000754; Ribosomal_S9. DR InterPro; IPR020574; Ribosomal_S9_CS. DR PANTHER; PTHR21569; PTHR21569; 1. DR Pfam; PF00380; Ribosomal_S9; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR PROSITE; PS00360; RIBOSOMAL_S9; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|RuleBase:RU003815, KW ECO:0000313|EMBL:ABX12321.1}; KW Ribosomal protein {ECO:0000256|RuleBase:RU003815, KW ECO:0000313|EMBL:ABX12321.1}. SQ SEQUENCE 149 AA; 16790 MW; F74DC4F06E36A3EF CRC64; MTTPKTEIYF ATRKTSSAHV YITKGQGKVR INNVPVEMIP QETAREVILA PLEITGDLRD KIDISVRVRG GGFMGQASAV ATAISRALTG WTKSKKDPKD HPFPKSTRED LRKRITDYDK YLISGDARRK EPKKFGGPGA RRRKQKSYR // ID A9A293_NITMS Unreviewed; 65 AA. AC A9A293; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12804.1}; GN OrderedLocusNames=Nmar_0908 {ECO:0000313|EMBL:ABX12804.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12804.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12804.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12804.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12804.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0908; -. DR EnsemblBacteria; ABX12804; ABX12804; Nmar_0908. DR KEGG; nmr:Nmar_0908; -. DR BioCyc; NMAR436308:GI3J-936-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 27 65 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 65 AA; 7709 MW; D2F5F9D2CBAF0602 CRC64; MSNLDDSIGK ILLELQKDDP ETFAKLMKKA QQETPELFED IDEENKEIDE YNKKVEEYNK TIDEE // ID A9A1J3_NITMS Unreviewed; 185 AA. AC A9A1J3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13172.1}; GN OrderedLocusNames=Nmar_1276 {ECO:0000313|EMBL:ABX13172.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13172.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13172.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13172.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13172.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1276; -. DR EnsemblBacteria; ABX13172; ABX13172; Nmar_1276. DR KEGG; nmr:Nmar_1276; -. DR eggNOG; arCOG02611; Archaea. DR eggNOG; COG3398; LUCA. DR BioCyc; NMAR436308:GI3J-1309-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 2. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 185 AA; 21970 MW; EEBCB98D168E7A0E CRC64; MKFFQRNVSK LICKKHLIYT LDRKTKILKI IQANPGIHVR GVIKESSFEN GVVTHYLRQL TEDGVVRTQK RSRYHRYYPV DVEEKEFPVI RNMRKPTKKE ILFRIMVEGN PSFKDLTLKI DKSPSTISWN VSELVKEGVV EKCKKDGKQC YRVKDKELFK KTFKKEFTKL FDEKLEHSED IFLAL // ID A9A4C4_NITMS Unreviewed; 103 AA. AC A9A4C4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12613.1}; GN OrderedLocusNames=Nmar_0717 {ECO:0000313|EMBL:ABX12613.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12613.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12613.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12613.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12613.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0717; -. DR EnsemblBacteria; ABX12613; ABX12613; Nmar_0717. DR KEGG; nmr:Nmar_0717; -. DR eggNOG; arCOG08751; Archaea. DR eggNOG; ENOG41111SG; LUCA. DR HOGENOM; HOG000108467; -. DR OMA; CTHEAGA; -. DR BioCyc; NMAR436308:GI3J-743-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 103 AA; 11815 MW; 606674811849BC9C CRC64; MSLNEISQKV IFHNSVDVWI SACGEKNKDW TNPEDYKQFI AHLLKNNLNL KAFNLCTHEA GATEEEKTKF TEILAQTKET DPNSKTYTIK LNDSAISTIR SYF // ID A9A5U6_NITMS Unreviewed; 281 AA. AC A9A5U6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13101.1}; GN OrderedLocusNames=Nmar_1205 {ECO:0000313|EMBL:ABX13101.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13101.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13101.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13101.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13101.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1205; -. DR EnsemblBacteria; ABX13101; ABX13101; Nmar_1205. DR KEGG; nmr:Nmar_1205; -. DR eggNOG; arCOG10580; Archaea. DR eggNOG; ENOG41110MQ; LUCA. DR HOGENOM; HOG000023841; -. DR BioCyc; NMAR436308:GI3J-1238-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 281 AA; 32943 MW; D137CC641594C29A CRC64; MNQNTQFGNL QSYLRYTQPT AKYLFGSMSF RKKKSSKHQE NVQKMLEALA LNGALTTWEI AKLSHSDISS IRTKDKELRR LVVGRRDRGR KTLGIIDVGL VIANTENLEL DTSKKYRLSL HGILYCLDVL DFSKKEIDQM ASNYSDILPM IFGKWDYLKS IIGDDVYRIR LLTGGLFLDT VHITKISQTP IFEIITYLNV KYQDYYESID ENDLADQISY LFYAALLVPF TVNENDEENK TEKWKKLFEE DENLNIWFFD FIKETSKFYS NRFDFIKSMI P // ID A9A1C9_NITMS Unreviewed; 467 AA. AC A9A1C9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121}; DE Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121}; DE EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121}; GN Name=gatB {ECO:0000256|HAMAP-Rule:MF_00121}; GN OrderedLocusNames=Nmar_0868 {ECO:0000313|EMBL:ABX12764.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12764.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12764.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12764.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Allows the formation of correctly charged Asn-tRNA(Asn) CC or Gln-tRNA(Gln) through the transamidation of misacylated Asp- CC tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both CC of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction CC takes place in the presence of glutamine and ATP through an CC activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). CC {ECO:0000256|HAMAP-Rule:MF_00121}. CC -!- CATALYTIC ACTIVITY: ATP + L-aspartyl-tRNA(Asn) + L-glutamine = ADP CC + phosphate + L-asparaginyl-tRNA(Asn) + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_00121}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP CC + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_00121}. CC -!- SUBUNIT: Heterotrimer of A, B and C subunits. {ECO:0000256|HAMAP- CC Rule:MF_00121}. CC -!- SIMILARITY: Belongs to the GatB/GatE family. GatB subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00121}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12764.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1C9; -. DR STRING; 436308.Nmar_0868; -. DR EnsemblBacteria; ABX12764; ABX12764; Nmar_0868. DR KEGG; nmr:Nmar_0868; -. DR eggNOG; arCOG01718; Archaea. DR eggNOG; COG0064; LUCA. DR HOGENOM; HOG000223742; -. DR KO; K02434; -. DR OMA; ESADYRY; -. DR BioCyc; NMAR436308:GI3J-896-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0050567; F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.410; -; 1. DR HAMAP; MF_00121; GatB; 1. DR InterPro; IPR004413; Apn/Gln-ADT_bsu. DR InterPro; IPR017959; Asn/Gln-tRNA_amidoTrfase_suB/E. DR InterPro; IPR006075; Asn/Gln-tRNA_Trfase_suB/E_cat. DR InterPro; IPR018027; Asn/Gln_amidotransferase. DR InterPro; IPR003789; Asn/Gln_tRNA_amidoTrfrase-rel. DR InterPro; IPR023168; GatB_Yqey_C. DR InterPro; IPR017958; Gln-tRNA_amidoTrfase_suB_CS. DR PANTHER; PTHR11659; PTHR11659; 1. DR Pfam; PF02934; GatB_N; 1. DR Pfam; PF02637; GatB_Yqey; 1. DR SMART; SM00845; GatB_Yqey; 1. DR SUPFAM; SSF89095; SSF89095; 1. DR TIGRFAMs; TIGR00133; gatB; 1. DR PROSITE; PS01234; GATB; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00121}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00121}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00121}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00121}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12764.1}. FT DOMAIN 322 466 GatB_Yqey. {ECO:0000259|SMART:SM00845}. SQ SEQUENCE 467 AA; 52533 MW; 04CAB01665069396 CRC64; MTKIGLEIHC QLTNLESKLF CSCKANYRQF EINENICPVC MGLPGSLPRL NQDAVKKATM IAMALNCSTP EKIAFFRKNY FYPDLPKNFQ ITQLNIYGDT SVGGPGSIMV GDKEIRITRI QLEEDPGRLI YEGTSSKNQI TLVDYNRAGT PLVEIVTEPD FENPKQVREF LNILSDLLEN LGVSDPSLEG AMRADANVSI EGGKKVEIKN IGSFHDLEKA VHFEITRQES LHSREIEIAQ ETRHWDDKRK ITISSRSKEE ALDYRYFLEG DIPWVTIDPA IQEKLKSEMP ESISSKKERY VSKYNIPNQV ADVLSSDKFY SDLFEDSHTE SNAKEIANII TTDLMGLVDT REKREASKIT ATHLRDLADA IQTGKISRNS AKNALHEIVK SGKELSQVMS DLDLGNVSDE SELLTVIKDV ISEEPQAVEQ AKSNPQTINY LVGKVMQKTK GKADPKLTLD LLKKQIE // ID A9A4L8_NITMS Unreviewed; 68 AA. AC A9A4L8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12996.1}; GN OrderedLocusNames=Nmar_1100 {ECO:0000313|EMBL:ABX12996.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12996.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12996.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12996.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12996.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12996; ABX12996; Nmar_1100. DR KEGG; nmr:Nmar_1100; -. DR eggNOG; arCOG08706; Archaea. DR eggNOG; ENOG41111BU; LUCA. DR HOGENOM; HOG000107119; -. DR OMA; MVFEVLY; -. DR BioCyc; NMAR436308:GI3J-1131-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 68 AA; 8065 MW; 8C5A47C00EECEE9C CRC64; MLESHAFFSK MVDELVEFSE YDPELADGIK WLDEQAQKKG ITFYDMVFEV LYKHDVNSKA KDWLSTRN // ID A9A5B8_NITMS Unreviewed; 160 AA. AC A9A5B8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=3-isopropylmalate dehydratase, small subunit {ECO:0000313|EMBL:ABX12317.1}; GN OrderedLocusNames=Nmar_0421 {ECO:0000313|EMBL:ABX12317.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12317.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12317.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12317.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12317.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5B8; -. DR STRING; 436308.Nmar_0421; -. DR EnsemblBacteria; ABX12317; ABX12317; Nmar_0421. DR KEGG; nmr:Nmar_0421; -. DR eggNOG; arCOG02230; Archaea. DR eggNOG; COG0066; LUCA. DR HOGENOM; HOG000222940; -. DR KO; K01704; -. DR OMA; YRNCINI; -. DR BioCyc; NMAR436308:GI3J-439-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016836; F:hydro-lyase activity; IEA:InterPro. DR Gene3D; 3.20.19.10; -; 1. DR InterPro; IPR015937; Acoase/IPM_deHydtase. DR InterPro; IPR015928; Aconitase/3IPM_dehydase_swvl. DR InterPro; IPR000573; AconitaseA/IPMdHydase_ssu_swvl. DR InterPro; IPR011827; LeuD_type2/HacB/DmdB. DR PANTHER; PTHR11670; PTHR11670; 1. DR Pfam; PF00694; Aconitase_C; 1. DR SUPFAM; SSF52016; SSF52016; 1. DR TIGRFAMs; TIGR02087; LEUD_arch; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 41 107 Aconitase_C. {ECO:0000259|Pfam:PF00694}. SQ SEQUENCE 160 AA; 17769 MW; D73FE563893E5240 CRC64; MKGNVIKYER DNIDTDVIIP GQYLKVHDYA ELATHAMEGL DPDFHSKVKE GDFILSGKNF GCGSSREHAP IALSHSGVKA VLALSFARIF YRNSVDGAFL LPIEIEEDAY NGISEGDEID IDISKNEINN LTKNQTYKMK PFSEIIGKII EAGGLFNYKP // ID A9A332_NITMS Unreviewed; 243 AA. AC A9A332; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12160.1}; GN OrderedLocusNames=Nmar_0264 {ECO:0000313|EMBL:ABX12160.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12160.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12160.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12160.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12160.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12160; ABX12160; Nmar_0264. DR KEGG; nmr:Nmar_0264; -. DR eggNOG; arCOG08785; Archaea. DR eggNOG; ENOG411104A; LUCA. DR HOGENOM; HOG000109628; -. DR OMA; MNVFRTA; -. DR BioCyc; NMAR436308:GI3J-274-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 30 92 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 243 AA; 26971 MW; 9B4887D3B35AE05A CRC64; MIILLSEEKK ESEVEAKPAE DFASEKPSAE DTAKAEAEKA LEDAKKASDA TAKAEAAAKA VEEAENAVKE ALAKAQAAKE EAEAAAEEEY KAIAAEVKAD AAKAANYTFK RQGEEIFRRE MGEPEFWLEK EDRFPRPILT AEQQESVTRQ VEIPQDQTPA YNPENVLSPE FEGKSNYERG VGEILEVAKL KLETLKNNPD ATEKDIKDTE DEITYLESLH ENYFIGMNVF RTAHGGRSKI TAK // ID A9A5A6_NITMS Unreviewed; 437 AA. AC A9A5A6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=FAD dependent oxidoreductase {ECO:0000313|EMBL:ABX12305.1}; GN OrderedLocusNames=Nmar_0409 {ECO:0000313|EMBL:ABX12305.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12305.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12305.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12305.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12305.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5A6; -. DR STRING; 436308.Nmar_0409; -. DR PRIDE; A9A5A6; -. DR EnsemblBacteria; ABX12305; ABX12305; Nmar_0409. DR KEGG; nmr:Nmar_0409; -. DR eggNOG; arCOG00754; Archaea. DR eggNOG; COG0579; LUCA. DR HOGENOM; HOG000105870; -. DR KO; K15736; -. DR OMA; MREYCKE; -. DR BioCyc; NMAR436308:GI3J-427-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 3. DR InterPro; IPR006076; FAD-dep_OxRdtase. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR Pfam; PF01266; DAO; 1. DR SUPFAM; SSF51905; SSF51905; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 404 DAO. {ECO:0000259|Pfam:PF01266}. SQ SEQUENCE 437 AA; 49253 MW; 1ADC489B56744F76 CRC64; MAKNFDVVII GGGILGTSIS YFLSHLNKSK KVAVIEQAKN VAFHTSGRNT GKVHAPYLYN PEKKKLFANA AFHGFDMWEE YSKLHNLPFK KDGVIEVALD KKGIKVLEKY LKWAKQNGLE EKDIELMDKS EIKKIEPEIK CEAALYVYRD GSADYSTYTE SLMKDSKENG TAFLLDTKVT ETKRENGKWK ITLNEEDEIF TEFLINAAGG EAVDIAHDVG VATELTDVHF RGEYWKAPKQ YNNLTKTSIY SVPEFPDYPF LDPHWIIRVD GNCEIGPNAV PVFSPYGYNK AENIKEFVPK MLEMLGSGAR KAIFDKQFQE LAMNEIQSSM SKSTMVERVR RFLPKIDAEK ITEKGTAGIR SSIINEKGKF EPDVILLDDE SSFHILNYNS PGATGALPFA AHVVNHLHNS GLLLSETTDG QCGPWKFSEI IEKIEKK // ID A9A5D7_NITMS Unreviewed; 278 AA. AC A9A5D7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; DE EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361}; DE AltName: Full=ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; GN Name=nadK {ECO:0000256|HAMAP-Rule:MF_00361}; GN OrderedLocusNames=Nmar_0440 {ECO:0000313|EMBL:ABX12336.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12336.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12336.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12336.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the regulation of the intracellular balance CC of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. CC Catalyzes specifically the phosphorylation on 2'-hydroxyl of the CC adenosine moiety of NAD to yield NADP. {ECO:0000256|HAMAP- CC Rule:MF_00361}. CC -!- CATALYTIC ACTIVITY: ATP + NAD(+) = ADP + NADP(+). CC {ECO:0000256|HAMAP-Rule:MF_00361}. CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00361}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00361}. CC -!- SIMILARITY: Belongs to the NAD kinase family. {ECO:0000256|HAMAP- CC Rule:MF_00361}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12336.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5D7; -. DR STRING; 436308.Nmar_0440; -. DR EnsemblBacteria; ABX12336; ABX12336; Nmar_0440. DR KEGG; nmr:Nmar_0440; -. DR eggNOG; arCOG01348; Archaea. DR eggNOG; COG0061; LUCA. DR HOGENOM; HOG000108748; -. DR KO; K00858; -. DR OMA; IDYFLET; -. DR BioCyc; NMAR436308:GI3J-458-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003951; F:NAD+ kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019674; P:NAD metabolic process; IEA:InterPro. DR GO; GO:0006741; P:NADP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 2.60.200.30; -; 1. DR Gene3D; 3.40.50.10330; -; 1. DR HAMAP; MF_00361; NAD_kinase; 1. DR InterPro; IPR017438; ATP-NAD_kinase_dom_1. DR InterPro; IPR017437; ATP-NAD_kinase_PpnK-typ_all-b. DR InterPro; IPR016064; NAD/diacylglycerol_kinase. DR InterPro; IPR002504; NADK. DR PANTHER; PTHR20275; PTHR20275; 1. DR Pfam; PF01513; NAD_kinase; 1. DR SUPFAM; SSF111331; SSF111331; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00361}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00361}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000313|EMBL:ABX12336.1}; KW NAD {ECO:0000256|HAMAP-Rule:MF_00361}; KW NADP {ECO:0000256|HAMAP-Rule:MF_00361}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00361}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00361, KW ECO:0000313|EMBL:ABX12336.1}. FT NP_BIND 76 77 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT NP_BIND 146 147 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT NP_BIND 186 191 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT ACT_SITE 76 76 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00361}. FT BINDING 81 81 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT BINDING 173 173 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT BINDING 175 175 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. FT BINDING 210 210 NAD; via carbonyl oxygen. FT {ECO:0000256|HAMAP-Rule:MF_00361}. FT BINDING 240 240 NAD. {ECO:0000256|HAMAP-Rule:MF_00361}. SQ SEQUENCE 278 AA; 30652 MW; 59278685B0AECBDF CRC64; MPFLENCLKL QNVAVVSKVG NKESEKAAID VAKKLLAKKS KVYTISPIQV EGAKQIETLE ELKKVKLDLV VTLGGDGTTL RVFRNLENET PILTINVGGN RGILAEITIE EIDDALNQIQ KDKFFLDKRT RVVASCGGKE FPPALNEIFI NRANLTKTAE IEIKFQNDTV KQKMDGVIVA TPSGSTGHSF SLGGPILHES LDVLIITPVA PVYRLESIVV PDEKIEIISS HDCNIVMDAQ VVKSAGFEEP ITIKKYKKPA VFIRLKKRGL RQMSKLGF // ID A9A2L4_NITMS Unreviewed; 214 AA. AC A9A2L4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Nitroreductase {ECO:0000313|EMBL:ABX13253.1}; GN OrderedLocusNames=Nmar_1357 {ECO:0000313|EMBL:ABX13253.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13253.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13253.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13253.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13253.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2L4; -. DR STRING; 436308.Nmar_1357; -. DR EnsemblBacteria; ABX13253; ABX13253; Nmar_1357. DR KEGG; nmr:Nmar_1357; -. DR eggNOG; arCOG00288; Archaea. DR eggNOG; COG0778; LUCA. DR HOGENOM; HOG000023858; -. DR OMA; CQPINEL; -. DR BioCyc; NMAR436308:GI3J-1391-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 1. DR SUPFAM; SSF55469; SSF55469; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 51 110 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. SQ SEQUENCE 214 AA; 24328 MW; BB6841C4AD174D27 CRC64; MEQDNPKKIY PQGYEPKIKV DENPNIRNQL LNEILKASPT EVVDTDLFAV MAKRRSTRKF KKQIVETEKV DKIIAAADTA PTARNFQGFE IFYIKSPQKK KELIEACNKQ PYVNAPLVLV FCKNPDRVKL DFPEHILKKF AIQDATLAAA YSQLAAQALG LSSIWIGMLD EQKVMDVIGT DLTPSSVLCI GYPEQVKFPK PRRNLKELVH VVWD // ID A9A505_NITMS Unreviewed; 79 AA. AC A9A505; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11914.1}; GN OrderedLocusNames=Nmar_0014 {ECO:0000313|EMBL:ABX11914.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11914.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11914.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11914.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11914.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0014; -. DR EnsemblBacteria; ABX11914; ABX11914; Nmar_0014. DR KEGG; nmr:Nmar_0014; -. DR eggNOG; arCOG05278; Archaea. DR eggNOG; COG5466; LUCA. DR BioCyc; NMAR436308:GI3J-14-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 79 AA; 9338 MW; 8A30331AB323BBDF CRC64; MKCRFMIFIG LIFCPWQMTL KIKVSDYGFE DDLEITGEAN EVIEKFRSHM EEKHGIDYSK EAVIQMFTNR GHSLESMKQ // ID A9A2Q8_NITMS Unreviewed; 209 AA. AC A9A2Q8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 47. DE RecName: Full=V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; DE AltName: Full=V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; GN Name=atpD {ECO:0000256|HAMAP-Rule:MF_00271}; GN OrderedLocusNames=Nmar_1689 {ECO:0000313|EMBL:ABX13585.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13585.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13585.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13585.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton CC gradient across the membrane. {ECO:0000256|HAMAP-Rule:MF_00271}. CC -!- SIMILARITY: Belongs to the V-ATPase D subunit family. CC {ECO:0000256|HAMAP-Rule:MF_00271}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13585.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1689; -. DR EnsemblBacteria; ABX13585; ABX13585; Nmar_1689. DR KEGG; nmr:Nmar_1689; -. DR eggNOG; arCOG04101; Archaea. DR eggNOG; COG1394; LUCA. DR KO; K02120; -. DR OMA; REVLLIY; -. DR BioCyc; NMAR436308:GI3J-1734-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-HAMAP. DR GO; GO:0042777; P:plasma membrane ATP synthesis coupled proton transport; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00271; ATP_synth_D_arch; 1. DR InterPro; IPR002699; V_ATPase_D. DR PANTHER; PTHR11671; PTHR11671; 1. DR Pfam; PF01813; ATP-synt_D; 1. DR TIGRFAMs; TIGR00309; V_ATPase_subD; 1. PE 3: Inferred from homology; KW ATP synthesis {ECO:0000256|HAMAP-Rule:MF_00271}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrogen ion transport {ECO:0000256|HAMAP-Rule:MF_00271}; KW Ion transport {ECO:0000256|HAMAP-Rule:MF_00271}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transport {ECO:0000256|HAMAP-Rule:MF_00271}. FT COILED 185 209 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 209 AA; 23550 MW; 7AA5930982D8575F CRC64; MSFGQNVAAT KIELFKYKKS SQVAVMVQKI LDDKRKVLLK NIEEMIEEAS KARGGIWEPL QDIYSSVNEA YLALGSSTVD SVAESTPSVM EVDVNVRRVV DVKIPALSVT EKDTKSMPYG FADTNSSIDR AAKQIKELLP KICKAAEYEN SIFSLAKALE KTQKLLNALE NVIIPQYQQK VRFIIATLEE REREEFAKLK KVKAKMESR // ID A9A3T9_NITMS Unreviewed; 453 AA. AC A9A3T9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Adenylosuccinate lyase {ECO:0000313|EMBL:ABX13351.1}; GN OrderedLocusNames=Nmar_1455 {ECO:0000313|EMBL:ABX13351.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13351.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13351.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13351.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13351.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3T9; -. DR STRING; 436308.Nmar_1455; -. DR EnsemblBacteria; ABX13351; ABX13351; Nmar_1455. DR KEGG; nmr:Nmar_1455; -. DR eggNOG; arCOG01747; Archaea. DR eggNOG; COG0015; LUCA. DR HOGENOM; HOG000033912; -. DR KO; K01756; -. DR OMA; VMWMANV; -. DR BioCyc; NMAR436308:GI3J-1492-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004018; F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; IEA:InterPro. DR GO; GO:0009152; P:purine ribonucleotide biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.275.10; -; 1. DR InterPro; IPR019468; AdenyloSucc_lyase_C. DR InterPro; IPR024083; Fumarase/histidase_N. DR InterPro; IPR000362; Fumarate_lyase_fam. DR InterPro; IPR022761; Fumarate_lyase_N. DR InterPro; IPR008948; L-Aspartase-like. DR InterPro; IPR004769; Pur_lyase. DR PANTHER; PTHR11444; PTHR11444; 1. DR Pfam; PF10397; ADSL_C; 1. DR Pfam; PF00206; Lyase_1; 1. DR PRINTS; PR00149; FUMRATELYASE. DR SMART; SM00998; ADSL_C; 1. DR SUPFAM; SSF48557; SSF48557; 1. DR TIGRFAMs; TIGR00928; purB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX13351.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 362 442 ADSL_C. {ECO:0000259|SMART:SM00998}. SQ SEQUENCE 453 AA; 50560 MW; 1E0F633DFB196C2F CRC64; MAILPIDSGR YGTKEMMEIF SEQNKVDYQL QIEGAAAISQ SEIGMIPKTV GRKIFKTANS GKITAKRIKQ LEAKSDHDTA ALVESLSEKC TKDARPWIHY GLTSNDLVDT SNSMQMRDAL LIIEPKVAKI ASILAKKAVK HSKVPAVGRT HGQHASIISF GLKFANWAAE MAKHVERIEE IKKRILICKT LGVVGTGSLM GAKSLEVQRR AAKRLKLFPA EVTTQVVPRE RYAEYVFELA LIGATLEKIA IEIRNLQRTE IGEVAEQFKK GQMGSSAVPV KRNPIKSERV SSLSKLVRSQ VALSFENIPL WHERDLSNSA NERFVIPTVS ILVDEMLETM TRIVSNLLVN EKRIVDNLYI TKGQIFAEFV LEALIKKGVP RFVAYRDVQR VAFLANDKGM LYKDAIKNDK AFTSKLTDKE IDAIFSPEKH LGASPKIISN VNQSVQKTVK KFI // ID A9A1B2_NITMS Unreviewed; 123 AA. AC A9A1B2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12747.1}; GN OrderedLocusNames=Nmar_0851 {ECO:0000313|EMBL:ABX12747.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12747.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12747.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12747.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12747.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0851; -. DR EnsemblBacteria; ABX12747; ABX12747; Nmar_0851. DR KEGG; nmr:Nmar_0851; -. DR eggNOG; arCOG10553; Archaea. DR eggNOG; ENOG41110MT; LUCA. DR BioCyc; NMAR436308:GI3J-878-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 94 121 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 123 AA; 14155 MW; B576601EA03B1619 CRC64; MENTVNKHLQ DLYGLNPDIP HMALQFPRLP PGLTHPMFNI HKNPVKEQFS RDAETINQKL QGFQHMYQQY AAGLLTGNQV IPPGHPLYTK QNSVQALQAE NDKLLKENTE LKKKLEKESK KQD // ID A9A3C9_NITMS Unreviewed; 263 AA. AC A9A3C9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12558.1}; GN OrderedLocusNames=Nmar_0662 {ECO:0000313|EMBL:ABX12558.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12558.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12558.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12558.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12558.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3C9; -. DR STRING; 436308.Nmar_0662; -. DR EnsemblBacteria; ABX12558; ABX12558; Nmar_0662. DR KEGG; nmr:Nmar_0662; -. DR eggNOG; arCOG00673; Archaea. DR eggNOG; COG1213; LUCA. DR HOGENOM; HOG000284638; -. DR OMA; QGQYMGL; -. DR BioCyc; NMAR436308:GI3J-687-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR025877; MobA-like_NTP_Trfase. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF12804; NTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 114 NTP_transf_3. {ECO:0000259|Pfam:PF12804}. SQ SEQUENCE 263 AA; 30318 MW; 9A69112E3769D093 CRC64; MVKLIILGAG EGTRLRPLTQ NCPKCMVNIF GKSLLEHQIN TAKNCGIDEI IIVKGFLGYM IQIPNIRYYE NKYYDSTNMV ETLFCAEKEL NESVIVSYGD IIYQKNILKK LIDSPDDFSV VIDKNWKNYW QIRFSNILDD VESLRLKDGY IMDIGQKPNS LDNIDGQYIG LMKFQHNALS TLKTFYHNSK EQSKLGTNPL NPKIPFTKSY MTDLLQGLIH NGQNIKAIEI NGGWLELDTL NDFEIYQKLY AQNSLKEFFN LES // ID A9A1U7_NITMS Unreviewed; 212 AA. AC A9A1U7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12068.1}; GN OrderedLocusNames=Nmar_0172 {ECO:0000313|EMBL:ABX12068.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12068.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12068.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12068.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12068.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U7; -. DR STRING; 436308.Nmar_0172; -. DR EnsemblBacteria; ABX12068; ABX12068; Nmar_0172. DR KEGG; nmr:Nmar_0172; -. DR eggNOG; arCOG01845; Archaea. DR eggNOG; arCOG03838; Archaea. DR eggNOG; COG2151; LUCA. DR HOGENOM; HOG000110820; -. DR OMA; VEKEVMQ; -. DR BioCyc; NMAR436308:GI3J-173-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002744; DUF59. DR InterPro; IPR008792; PQQ_synth_PqqD. DR Pfam; PF01883; DUF59; 1. DR Pfam; PF05402; PqqD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 79 DUF59. {ECO:0000259|Pfam:PF01883}. SQ SEQUENCE 212 AA; 23441 MW; 87F078379394B962 CRC64; MSTVSPQAIE NSLKQCMDPE VPLNIVEMGL IYGIDVAENN DVNIKMTMTT QGCPLHETLV SDATRFVKKV PGVNNVNIEI VWDPPWSMDK MSEEAKIKIK NMGAGMNTPA PINYETALPQ GVGKLVQQED GSMVLANEHD QGFMVNQAIV DFWKSCNGQR KVTDLVEIFA QQTGLQRNQV EKEVMQLLQQ LRDGGLIAIA GQPDAPNVEF KK // ID A9A4H5_NITMS Unreviewed; 187 AA. AC A9A4H5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE RecName: Full=Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527}; DE EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527}; GN OrderedLocusNames=Nmar_1057 {ECO:0000313|EMBL:ABX12953.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12953.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12953.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12953.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the DNA glycosylase MPG family. CC {ECO:0000256|HAMAP-Rule:MF_00527}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12953.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4H5; -. DR STRING; 436308.Nmar_1057; -. DR EnsemblBacteria; ABX12953; ABX12953; Nmar_1057. DR KEGG; nmr:Nmar_1057; -. DR eggNOG; arCOG04295; Archaea. DR eggNOG; COG2094; LUCA. DR HOGENOM; HOG000224224; -. DR KO; K03652; -. DR OMA; HDVPWRF; -. DR BioCyc; NMAR436308:GI3J-1088-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003905; F:alkylbase DNA N-glycosylase activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006284; P:base-excision repair; IEA:InterPro. DR Gene3D; 3.10.300.10; -; 1. DR HAMAP; MF_00527; 3MGH; 1. DR InterPro; IPR011034; Formyl_transferase_C-like. DR InterPro; IPR003180; PurDNA_glycsylse. DR PANTHER; PTHR10429; PTHR10429; 1. DR Pfam; PF02245; Pur_DNA_glyco; 1. DR SUPFAM; SSF50486; SSF50486; 1. DR TIGRFAMs; TIGR00567; 3mg; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA damage {ECO:0000256|HAMAP-Rule:MF_00527}; KW DNA repair {ECO:0000256|HAMAP-Rule:MF_00527}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00527}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 187 AA; 21288 MW; 2C0309000C829963 CRC64; MILNTLPRKF YLQDTVTVAK NLLGKKIIRK IGRNEISGII TETEAYKHKD DPASHAYRKI TDRNKAMFGD VGIAYVYFTY GMYYCFNVVA RNPKVAAGAV LIRAIEPEKG IKRMQENRNK KDLKNLTNGP AKLTQALEIT KEQYGVDLTK DSKLYITKGI EVKKITSSPR IGIKEATDKL WNFKINI // ID A9A2Z6_NITMS Unreviewed; 133 AA. AC A9A2Z6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; DE Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451}; DE Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451}; DE EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451}; DE AltName: Full=Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; GN Name=ndk {ECO:0000256|HAMAP-Rule:MF_00451}; GN OrderedLocusNames=Nmar_0228 {ECO:0000313|EMBL:ABX12124.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12124.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12124.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12124.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Major role in the synthesis of nucleoside triphosphates CC other than ATP. The ATP gamma phosphate is transferred to the NDP CC beta phosphate via a ping-pong mechanism, using a phosphorylated CC active-site intermediate. {ECO:0000256|HAMAP-Rule:MF_00451}. CC -!- CATALYTIC ACTIVITY: ATP + nucleoside diphosphate = ADP + CC nucleoside triphosphate. {ECO:0000256|HAMAP-Rule:MF_00451}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00451}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00451}. CC -!- SIMILARITY: Belongs to the NDK family. {ECO:0000256|HAMAP- CC Rule:MF_00451, ECO:0000256|RuleBase:RU004011}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12124.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z6; -. DR STRING; 436308.Nmar_0228; -. DR EnsemblBacteria; ABX12124; ABX12124; Nmar_0228. DR KEGG; nmr:Nmar_0228; -. DR eggNOG; arCOG04313; Archaea. DR eggNOG; COG0105; LUCA. DR HOGENOM; HOG000224564; -. DR KO; K00940; -. DR OMA; FPMVLEK; -. DR BioCyc; NMAR436308:GI3J-234-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004550; F:nucleoside diphosphate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006241; P:CTP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006183; P:GTP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006228; P:UTP biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00451; NDP_kinase; 1. DR InterPro; IPR001564; Nucleoside_diP_kinase. DR Pfam; PF00334; NDK; 1. DR PRINTS; PR01243; NUCDPKINASE. DR SMART; SM00562; NDK; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00451}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00451}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000313|EMBL:ABX12124.1}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00451}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00451}; KW Nucleotide metabolism {ECO:0000256|HAMAP-Rule:MF_00451}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00451}; KW Phosphoprotein {ECO:0000256|HAMAP-Rule:MF_00451}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00451, KW ECO:0000313|EMBL:ABX12124.1}. FT ACT_SITE 116 116 Pros-phosphohistidine intermediate. FT {ECO:0000256|HAMAP-Rule:MF_00451}. FT BINDING 10 10 ATP. {ECO:0000256|HAMAP-Rule:MF_00451}. FT BINDING 58 58 ATP. {ECO:0000256|HAMAP-Rule:MF_00451}. FT BINDING 86 86 ATP. {ECO:0000256|HAMAP-Rule:MF_00451}. FT BINDING 92 92 ATP. {ECO:0000256|HAMAP-Rule:MF_00451}. FT BINDING 103 103 ATP. {ECO:0000256|HAMAP-Rule:MF_00451}. FT BINDING 113 113 ATP. {ECO:0000256|HAMAP-Rule:MF_00451}. SQ SEQUENCE 133 AA; 14683 MW; 2B2E2A7E957A846D CRC64; MTEKSLFIVK PDAVARNLVG EVISRFERKG FKILKLKMFT FTQEQAENFY GVHKDKPFFG ELTSFITSGP VVAAIIEGNN AIATTRIMIG ATKSFEAAPG SIRGDFGLGF SENIIHASDS QESFDHESRV AFE // ID A9A2A7_NITMS Unreviewed; 289 AA. AC A9A2A7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=PfkB domain protein {ECO:0000313|EMBL:ABX12818.1}; GN OrderedLocusNames=Nmar_0922 {ECO:0000313|EMBL:ABX12818.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12818.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12818.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12818.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12818.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2A7; -. DR STRING; 436308.Nmar_0922; -. DR EnsemblBacteria; ABX12818; ABX12818; Nmar_0922. DR KEGG; nmr:Nmar_0922; -. DR eggNOG; arCOG00016; Archaea. DR eggNOG; COG0524; LUCA. DR HOGENOM; HOG000108390; -. DR OMA; ASHIVLD; -. DR BioCyc; NMAR436308:GI3J-950-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.1190.20; -; 1. DR InterPro; IPR011611; PfkB_dom. DR InterPro; IPR029056; Ribokinase-like. DR Pfam; PF00294; PfkB; 1. DR SUPFAM; SSF53613; SSF53613; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 105 263 PfkB. {ECO:0000259|Pfam:PF00294}. SQ SEQUENCE 289 AA; 32286 MW; 4CCC581C028E7D4C CRC64; MKLAVFAHCA VDTITIGENN YEQIGGSACY CGLTAREFKF DVDLYTKCGN DFPIQYLSDN KINLINSESA KNTTKFAISI TGADRTLKLE NQCDPIEYSN TKADGHLVSP IFHEITNETL KKIKDDSNFL FVDPQGFLRE KDSENNVFLQ KKDLDLSNVN AIKVNPEEAQ QLVTGTHDEM MVALQKRGVE HVLLTNKTEV SLLVKDKVYS ITLPNKEIHD TTGIGDIFCA AFCCTMLKEK DYLWALCFAG GAAQAALDSK NVGLQKIPRK GVIQNNASYF YNLVKFRDL // ID A9A2Y6_NITMS Unreviewed; 224 AA. AC A9A2Y6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=Ribose 5-phosphate isomerase {ECO:0000313|EMBL:ABX12114.1}; DE EC=5.3.1.6 {ECO:0000313|EMBL:ABX12114.1}; GN OrderedLocusNames=Nmar_0218 {ECO:0000313|EMBL:ABX12114.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12114.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12114.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12114.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12114.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Y6; -. DR STRING; 436308.Nmar_0218; -. DR EnsemblBacteria; ABX12114; ABX12114; Nmar_0218. DR KEGG; nmr:Nmar_0218; -. DR eggNOG; arCOG01122; Archaea. DR eggNOG; COG0120; LUCA. DR HOGENOM; HOG000276369; -. DR KO; K01807; -. DR OMA; GACHVQE; -. DR BioCyc; NMAR436308:GI3J-223-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004751; F:ribose-5-phosphate isomerase activity; IEA:UniProtKB-EC. DR GO; GO:0009052; P:pentose-phosphate shunt, non-oxidative branch; IEA:InterPro. DR InterPro; IPR004788; Ribose5P_isomerase_typA. DR PANTHER; PTHR11934; PTHR11934; 1. DR Pfam; PF06026; Rib_5-P_isom_A; 1. DR TIGRFAMs; TIGR00021; rpiA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12114.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 224 AA; 24427 MW; 7D0C0F27F9C7C919 CRC64; MSYDGAITAL SNNALKFVKD DYVVGLGSGR AATVLVKSLG KLIKLKNYNI KGVPTSLQIK LIAEKVGIPL IEADQVEHID VVFDGADQID SQKFVIKGGG GALLRENILF SLAKKVVVMA DKTKFVKNFT RTVPVEVHPL ARNSVSKSMK KLGGKAELRS LDRGYPFFTE NGNIILDCDF GTIKNPKALT QKIKATTGVL ESGIFLRKPD VIYRAKTGEK FDIL // ID A9A4F9_NITMS Unreviewed; 141 AA. AC A9A4F9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12648.1}; GN OrderedLocusNames=Nmar_0752 {ECO:0000313|EMBL:ABX12648.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12648.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12648.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12648.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12648.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0752; -. DR EnsemblBacteria; ABX12648; ABX12648; Nmar_0752. DR KEGG; nmr:Nmar_0752; -. DR eggNOG; arCOG10543; Archaea. DR eggNOG; ENOG41111MJ; LUCA. DR BioCyc; NMAR436308:GI3J-778-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 141 AA; 15992 MW; CCB36B00536D9A23 CRC64; MAEKVWMGAI FLKDEGGYEI VLKSLEHYRK RLRTIAQSPE LKDSAAMFAS VLNQQAMKTV PKIDEVVEKI KTSINDIQAM QNLSNEISFF EKALMCYESD IDKAQNTGHE YFVNLVGDLA AAKNDIEIIK TALKKIKEFS E // ID A9A518_NITMS Unreviewed; 142 AA. AC A9A518; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11927.1}; GN OrderedLocusNames=Nmar_0027 {ECO:0000313|EMBL:ABX11927.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11927.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11927.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11927.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11927.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0027; -. DR EnsemblBacteria; ABX11927; ABX11927; Nmar_0027. DR KEGG; nmr:Nmar_0027; -. DR eggNOG; arCOG08814; Archaea. DR eggNOG; ENOG4111074; LUCA. DR HOGENOM; HOG000110486; -. DR OMA; HETGISE; -. DR BioCyc; NMAR436308:GI3J-27-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 142 AA; 16002 MW; C0B73E318E57D11C CRC64; MNKKIIIVPI AIIVGFVMVL SLDSSEKDDG IVFHVTLADP QLYVNGEYTE TFEIESGEYY FRFVPNGSSP EILSISLDGY SIEFSEDFKL ENTLHETGIS EYYTWEYLGE NQIMISEKQQ VKISINPNGN VMGSVSVSIL QN // ID A9A589_NITMS Unreviewed; 499 AA. AC A9A589; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; DE Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453}; DE Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453}; DE Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453}; DE EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453}; GN Name=pckA {ECO:0000256|HAMAP-Rule:MF_00453}; GN OrderedLocusNames=Nmar_0392 {ECO:0000313|EMBL:ABX12288.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12288.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12288.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12288.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the gluconeogenesis. Catalyzes the CC conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) CC through direct phosphoryl transfer between the nucleoside CC triphosphate and OAA. {ECO:0000256|HAMAP-Rule:MF_00453}. CC -!- CATALYTIC ACTIVITY: ATP + oxaloacetate = ADP + phosphoenolpyruvate CC + CO(2). {ECO:0000256|HAMAP-Rule:MF_00453}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00453}; CC Note=Binds 1 Mn(2+) ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00453}; CC -!- PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. CC {ECO:0000256|HAMAP-Rule:MF_00453}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00453}. CC -!- SIMILARITY: Belongs to the phosphoenolpyruvate carboxykinase [ATP] CC family. {ECO:0000256|HAMAP-Rule:MF_00453}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12288.1; -; Genomic_DNA. DR ProteinModelPortal; A9A589; -. DR STRING; 436308.Nmar_0392; -. DR EnsemblBacteria; ABX12288; ABX12288; Nmar_0392. DR KEGG; nmr:Nmar_0392; -. DR eggNOG; arCOG06073; Archaea. DR eggNOG; COG1866; LUCA. DR HOGENOM; HOG000271471; -. DR KO; K01610; -. DR OMA; RFIVKEP; -. DR BioCyc; NMAR436308:GI3J-409-MONOMER; -. DR UniPathway; UPA00138; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0004612; F:phosphoenolpyruvate carboxykinase (ATP) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006094; P:gluconeogenesis; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.449.10; -; 1. DR Gene3D; 3.90.228.20; -; 2. DR HAMAP; MF_00453; PEPCK_ATP; 1. DR InterPro; IPR001272; PEP_carboxykinase_ATP. DR InterPro; IPR013035; PEP_carboxykinase_C. DR InterPro; IPR008210; PEP_carboxykinase_N. DR Pfam; PF01293; PEPCK_ATP; 1. DR PIRSF; PIRSF006294; PEP_crbxkin; 1. DR SUPFAM; SSF68923; SSF68923; 1. DR TIGRFAMs; TIGR00224; pckA; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00453}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00453}; KW Decarboxylase {ECO:0000256|HAMAP-Rule:MF_00453}; KW Gluconeogenesis {ECO:0000256|HAMAP-Rule:MF_00453}; KW Kinase {ECO:0000313|EMBL:ABX12288.1}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00453}; KW Manganese {ECO:0000256|HAMAP-Rule:MF_00453}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00453}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00453}; KW Pyruvate {ECO:0000313|EMBL:ABX12288.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12288.1}. FT NP_BIND 205 213 ATP. {ECO:0000256|HAMAP-Rule:MF_00453}. FT NP_BIND 408 409 ATP. {ECO:0000256|HAMAP-Rule:MF_00453}. FT METAL 170 170 Manganese. {ECO:0000256|HAMAP- FT Rule:MF_00453}. FT METAL 189 189 Manganese; via tele nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_00453}. FT METAL 226 226 Manganese. {ECO:0000256|HAMAP- FT Rule:MF_00453}. FT BINDING 29 29 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00453}. FT BINDING 164 164 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00453}. FT BINDING 170 170 ATP. {ECO:0000256|HAMAP-Rule:MF_00453}. FT BINDING 170 170 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00453}. FT BINDING 189 189 ATP. {ECO:0000256|HAMAP-Rule:MF_00453}. FT BINDING 254 254 ATP. {ECO:0000256|HAMAP-Rule:MF_00453}. FT BINDING 289 289 ATP. {ECO:0000256|HAMAP-Rule:MF_00453}. FT BINDING 289 289 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00453}. FT BINDING 414 414 ATP. {ECO:0000256|HAMAP-Rule:MF_00453}. SQ SEQUENCE 499 AA; 55148 MW; 4FB9FB96C65D0A7B CRC64; MVNLAVERKE GVVNSTGSLS VNTGKYTGRS PDDRFIVYDD KTHDTIDWGK INHQFPSGKF EKLLEKMKNF VDNKELFVFD GFVGADPGTR LPIRVINDHV WQNMFSSNLF IRPTSDELQN HEPEFTILCI NDFKADPEID GTRTDIFILI DLTRKIVLIG GTEYAGEMKK SMFGVMNFLL PDKGIFPMHC SANIGEKGDT ALFFGLSGTG KTTLSADPNR KLIGDDEHGW SDNGTFNFEG GCYAKCINLS QEAEPEIWNA IKPGALLENV VLNDNVPDYD DNTLTENTRV GYPLDFIPGA VIPSVGGNPK VIIFLTADAL GVLPPVSRLT KEAAMYHFMS GYTSKLAGTE RGIKEPKSVF SQCFGAPFMP RPASVYAKLL GEKINEHNTV VYLINTGWSG GPYGVGQRVK IKYSRAMVTA ALSGGLNIVK YTHNDLFNLD VPTEVEGVPS EILDPRNTWI DKDAYDLSAK KLAQMFVENF KKFDGVSQEI IDAGPKPPQ // ID A9A1S1_NITMS Unreviewed; 214 AA. AC A9A1S1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 43. DE SubName: Full=Cyclase family protein {ECO:0000313|EMBL:ABX12042.1}; GN OrderedLocusNames=Nmar_0142 {ECO:0000313|EMBL:ABX12042.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12042.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12042.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12042.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12042.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1S1; -. DR STRING; 436308.Nmar_0142; -. DR EnsemblBacteria; ABX12042; ABX12042; Nmar_0142. DR KEGG; nmr:Nmar_0142; -. DR eggNOG; arCOG02462; Archaea. DR eggNOG; COG1878; LUCA. DR HOGENOM; HOG000219455; -. DR OMA; ITEEMVV; -. DR BioCyc; NMAR436308:GI3J-145-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004061; F:arylformamidase activity; IEA:InterPro. DR GO; GO:0019441; P:tryptophan catabolic process to kynurenine; IEA:InterPro. DR InterPro; IPR007325; KFase. DR Pfam; PF04199; Cyclase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 214 AA; 24458 MW; 8D1808256174FA58 CRC64; MNEIIDLTYS INEKMITYPS PWHPKVSLER LGKIEDVGRN TRKLVLGTHT GTHIDAPLHF IPDGNSIESI PLEKITGTVT ILDFTNLKNN HPITKEELQD KKISKRLIFR FGWQKYWNTP NFYNDYPFFT EDAANYLVSQ GVELIGYDTP SPDKSKQDDV DSPIHKIFLS NQIVLLEYLS NLDCVQNLEG WSIVVAPMKI DGSDGSPSRV FIFK // ID A9A4E0_NITMS Unreviewed; 47 AA. AC A9A4E0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12629.1}; GN OrderedLocusNames=Nmar_0733 {ECO:0000313|EMBL:ABX12629.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12629.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12629.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12629.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12629.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0733; -. DR EnsemblBacteria; ABX12629; ABX12629; Nmar_0733. DR KEGG; nmr:Nmar_0733; -. DR eggNOG; arCOG07442; Archaea. DR eggNOG; ENOG410Y0R8; LUCA. DR HOGENOM; HOG000109203; -. DR BioCyc; NMAR436308:GI3J-759-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 47 AA; 5080 MW; 42F0FE7714219500 CRC64; MTIGYCVKCR DKREIGGAKP YTMKNGKPAI KGTCPTCSTA IFRIGRG // ID A9A2J1_NITMS Unreviewed; 148 AA. AC A9A2J1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=UspA domain protein {ECO:0000313|EMBL:ABX13230.1}; GN OrderedLocusNames=Nmar_1334 {ECO:0000313|EMBL:ABX13230.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13230.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13230.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13230.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13230.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2J1; -. DR STRING; 436308.Nmar_1334; -. DR EnsemblBacteria; ABX13230; ABX13230; Nmar_1334. DR KEGG; nmr:Nmar_1334; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR BioCyc; NMAR436308:GI3J-1368-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006015; Universal_stress_UspA. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. DR PRINTS; PR01438; UNVRSLSTRESS. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 147 Usp. {ECO:0000259|Pfam:PF00582}. FT COILED 59 82 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 148 AA; 16908 MW; B4419B6A512D5709 CRC64; MFMVIKIKKI LVPYDATPSS EKAVKKVLPL IEKHDSKILF LSCVHDKATF GFFKTKSDKR EIAKEKKKAE RHHERLKKEA AKFGIPSSSK IIKSDLESKS IIEYAKDQNA DLIVMSKSKI GTHAEKMYYN STVDAVFKKT PCPFLYIP // ID A9A2A3_NITMS Unreviewed; 280 AA. AC A9A2A3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12814.1}; GN OrderedLocusNames=Nmar_0918 {ECO:0000313|EMBL:ABX12814.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12814.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12814.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12814.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12814.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2A3; -. DR STRING; 436308.Nmar_0918; -. DR EnsemblBacteria; ABX12814; ABX12814; Nmar_0918. DR KEGG; nmr:Nmar_0918; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR OMA; MIRDITM; -. DR BioCyc; NMAR436308:GI3J-946-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR027560; PEFG-CTERM. DR SUPFAM; SSF49503; SSF49503; 1. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 252 270 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 280 AA; 30510 MW; 0FAEC85264B4EF67 CRC64; MKYALAVLPL MAILMVGSGF AFAESYEIKI PSGASDENFP YFWSQKDTGE TSGIITIFPG DTITWSNADT AFHTITSINP TGERTPTPDD ENGLFDSGFF TAGKSFTHQF DELGDFYYYC TLHPWMNGVV HVVLDPGSVK SIDGIASGYT DDGLGFEVKY FLDAHLAPAV HVNPDEKTLT FTLTGESNNE HLTITLPKEL IDNPTSVWVD GNMVEFESDS TISGNTATQL VIPLDNTSRE VKIMGSKVIP EFGGIALLVL TISIISVIIF SKKTSLIALR // ID A9A535_NITMS Unreviewed; 264 AA. AC A9A535; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 58. DE SubName: Full=Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX11944.1}; GN OrderedLocusNames=Nmar_0044 {ECO:0000313|EMBL:ABX11944.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11944.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11944.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11944.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases CC (SDR) family. {ECO:0000256|RuleBase:RU000363}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11944.1; -; Genomic_DNA. DR ProteinModelPortal; A9A535; -. DR STRING; 436308.Nmar_0044; -. DR EnsemblBacteria; ABX11944; ABX11944; Nmar_0044. DR KEGG; nmr:Nmar_0044; -. DR eggNOG; arCOG01263; Archaea. DR eggNOG; COG0300; LUCA. DR KO; K07124; -. DR OMA; LMAVQSK; -. DR BioCyc; NMAR436308:GI3J-44-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR002347; SDR_fam. DR Pfam; PF00106; adh_short; 1. DR PIRSF; PIRSF000126; 11-beta-HSD1; 1. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 264 AA; 28954 MW; 69A46648AE2FA800 CRC64; MDFKNKTVLI TGASSGIGKQ TAIEFAKLGA NIILVARRKE KLDELASELE KFKVTTFVCK CDVSDKTQVK EMSKTVLEKF DSVDVLVNNA GFAIYGSVKD LSVDEIESQM ETNYFGMMYC IKNFLPSMLD KKSGHIVNVA SVAASFGLPG IASYCASKFA ILGFSEGLKH ELHGTGVGIT VVSPIMVRTD FFDHPSFEKM PKYSPTSLSS KTVAKAILKA ANSPRLEIIV PSVVRSAVWL KHTFPYFINP IMGKSFKKQL DAVK // ID A9A5E3_NITMS Unreviewed; 441 AA. AC A9A5E3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=Sodium/hydrogen exchanger {ECO:0000313|EMBL:ABX12342.1}; GN OrderedLocusNames=Nmar_0446 {ECO:0000313|EMBL:ABX12342.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12342.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12342.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12342.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12342.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5E3; -. DR STRING; 436308.Nmar_0446; -. DR EnsemblBacteria; ABX12342; ABX12342; Nmar_0446. DR KEGG; nmr:Nmar_0446; -. DR eggNOG; arCOG01955; Archaea. DR eggNOG; COG0475; LUCA. DR HOGENOM; HOG000107980; -. DR KO; K03455; -. DR OMA; VASTHNR; -. DR BioCyc; NMAR436308:GI3J-464-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015299; F:solute:proton antiporter activity; IEA:InterPro. DR InterPro; IPR006153; Cation/H_exchanger. DR Pfam; PF00999; Na_H_Exchanger; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003721}. FT TRANSMEM 37 56 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 83 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 103 121 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 133 154 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 166 185 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 197 220 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 226 248 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 268 301 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 321 354 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 400 426 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 44 426 Na_H_Exchanger. FT {ECO:0000259|Pfam:PF00999}. SQ SEQUENCE 441 AA; 46484 MW; 9EAB0567C15C6539 CRC64; MQNIPLQLNP SGIQSSLNNT VSSLIEQITP ELPHTSFVTD LAFIMIIGAV VTLAFFKIKQ PLIIGYLFAG MLLGPLSPFW SWLLPEGGPP GDVLEGVGIL SDISALHLFA EIGVILLLFV IGIEFPYAKI KSIGRVAVGV GTLGLFATLG VVFYTATALG LQFMDALFIA AALSISSTAI IVKILEDMGR IKKESSILVL GILIVEDVIA VILISSLQSI ALVGSVSIES IIVVVLVATG LIVGTFTIGT RVIPPLIDRV AAAEHREILL LSVLGVCFGY ALFANIVGLS VAIGAFLAGV LVAESKSAEV AKLLSSPIKD MFVAIFFISV GALMDISQLG DYIWIAIALI AVATGMKFGG NMIGNIIFRQ KRGKALRSAF TLGAPRGEFS IVIVKAGVDI GAVSAFLFPL IGIISIITAF LSPFFVKAGD KVVEKLEEED V // ID A9A1G2_NITMS Unreviewed; 693 AA. AC A9A1G2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 41. DE SubName: Full=SMC domain protein {ECO:0000313|EMBL:ABX13141.1}; GN OrderedLocusNames=Nmar_1245 {ECO:0000313|EMBL:ABX13141.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13141.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13141.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13141.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13141.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G2; -. DR STRING; 436308.Nmar_1245; -. DR EnsemblBacteria; ABX13141; ABX13141; Nmar_1245. DR KEGG; nmr:Nmar_1245; -. DR eggNOG; arCOG00202; Archaea. DR eggNOG; arCOG00368; Archaea. DR eggNOG; COG0419; LUCA. DR KO; K03546; -. DR OMA; NFKAHEE; -. DR BioCyc; NMAR436308:GI3J-1278-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 197 241 {ECO:0000256|SAM:Coils}. FT COILED 249 280 {ECO:0000256|SAM:Coils}. FT COILED 290 328 {ECO:0000256|SAM:Coils}. FT COILED 358 399 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 693 AA; 78459 MW; 081BEB2A6F213E26 CRC64; MITSIELGDF LAHSDTKLEF DNGVTVFVGH NGAGKSSIID AITFALFGQH TRKSNKGLIK RGANQGYSKV NFSVNGKSFE AVRKIDSKGT LSAKFTEIVG DEKIEIAAGE RKQFGESMTQ EVEKAIGLDF EKLKVASIVQ QGELNAIINA KPKEFKELLN AIIGIDKLDV ASESMKTVNK EFRESIRSRI GYDDTHIDIL SRELEKYQNE IKESEPQKIQ LENKQKQLQS EVEELRKKVE TEAPKIDKLN QLEARKRELI EYAKEAIHEI QQEISENERK IRDCEGCFEY ASLKEDLESK IQKVEQAVEE TLKKIQEMKS QTASLREKQS LATKLQLKDN KCPVCDSDVE KLNPLFQEEH LKQELKTLQD QIILKEKEHQ MYNQKRNEFS EKLQSARDAE ATLRAHSISS KEELDKIQEE VKIKKENIQK IPSTNNSNLI EISQIDSHAK TIFENISQLE SETKGFDEQE FINLKKSVNE KQMKLSNIDQ QIGAILEKIS KGVEQIKIFE NAISELKVVK EYVTNLDDIQ NNVFSRDGPV ATSLRSWALN AISAKASEYL ALLNTKIQRI QLTEKTRDIS IICNSKSEEL DLESLSGGEK VSVALSLRLG MANLLGGSNL NLMILDEPTT HLDAERKKSL VSVLSQLSNI SNSETPMQFI IITHDAEIFE DSTVEQIYKF ESSEQGSRVT LLN // ID A9A1R9_NITMS Unreviewed; 352 AA. AC A9A1R9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 42. DE SubName: Full=Pyruvate carboxyltransferase {ECO:0000313|EMBL:ABX12040.1}; GN OrderedLocusNames=Nmar_0140 {ECO:0000313|EMBL:ABX12040.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12040.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12040.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12040.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12040.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R9; -. DR STRING; 436308.Nmar_0140; -. DR EnsemblBacteria; ABX12040; ABX12040; Nmar_0140. DR KEGG; nmr:Nmar_0140; -. DR eggNOG; arCOG02092; Archaea. DR eggNOG; COG0119; LUCA. DR HOGENOM; HOG000237148; -. DR KO; K01666; -. DR OMA; PETATGM; -. DR BioCyc; NMAR436308:GI3J-143-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008701; F:4-hydroxy-2-oxovalerate aldolase activity; IEA:InterPro. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0019439; P:aromatic compound catabolic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR017629; 4OH_2_O-val_aldolase. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR012425; DmpG_comm. DR InterPro; IPR000891; PYR_CT. DR PANTHER; PTHR10277:SF3; PTHR10277:SF3; 1. DR Pfam; PF07836; DmpG_comm; 1. DR Pfam; PF00682; HMGL-like; 1. DR PROSITE; PS50991; PYR_CT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyruvate {ECO:0000313|EMBL:ABX12040.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12040.1}. FT DOMAIN 5 255 PYR_CT. {ECO:0000259|PROSITE:PS50991}. SQ SEQUENCE 352 AA; 39364 MW; DAD48916117B4850 CRC64; MSKKVQILDT TLRDGSYSVN FSFTSSDTSI ICSKLEKSGI KLIEVGHGLG FNASNSGYGK STQSDEEYMI AAKESLSKSM YGMFCIPGIA KLSDLELAKK HGMGFIRVGT DVTKVHQSEK FIKKAKNLGF FVASNFMKSY VMPPDKFASI VKQSEEFGTD MVYIVDSAGG MFSSDLLEYY NSIRNVSEIP LGFHGHDNLG MAISNSLYAA DLGMEYIDSS LQGIGRSSGN ACTEVLVMAL KKKGFKIDVD FHSLFEAGQE CVYPLINNSN KLPLDIVSGY ADFHSSYMHH IMKYSSKFKV DPLLLIIEYS KINKIDIDEK KLEQIAKKLK RKQDIYTAKY RFNRYVGREQ DN // ID A9A3A7_NITMS Unreviewed; 159 AA. AC A9A3A7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12536.1}; GN OrderedLocusNames=Nmar_0640 {ECO:0000313|EMBL:ABX12536.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12536.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12536.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12536.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12536.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0640; -. DR EnsemblBacteria; ABX12536; ABX12536; Nmar_0640. DR KEGG; nmr:Nmar_0640; -. DR eggNOG; arCOG08653; Archaea. DR eggNOG; ENOG41111FG; LUCA. DR HOGENOM; HOG000105571; -. DR OMA; SLKTECK; -. DR BioCyc; NMAR436308:GI3J-665-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 110 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 148 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 159 AA; 16947 MW; F5CBE145DF53543C CRC64; MTNTITFVFS NPKYIILSFA IFVPMLIGLL ILSEYIFLEP YVVSHLPTGT EFGFALIVAI SALSALVLPM NVFRINVLKS STRKMGSSVI GSFVGAAAGA CSCGPIGFAV ISTFGSVGAT ATAFLTNYEI PLRIIAIGVL VITYFTTVKS LKTECKFDP // ID A9A442_NITMS Unreviewed; 314 AA. AC A9A442; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=ABC-3 protein {ECO:0000313|EMBL:ABX12226.1}; GN OrderedLocusNames=Nmar_0330 {ECO:0000313|EMBL:ABX12226.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12226.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12226.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12226.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12226.1; -; Genomic_DNA. DR ProteinModelPortal; A9A442; -. DR STRING; 436308.Nmar_0330; -. DR EnsemblBacteria; ABX12226; ABX12226; Nmar_0330. DR KEGG; nmr:Nmar_0330; -. DR eggNOG; arCOG01006; Archaea. DR eggNOG; COG1108; LUCA. DR HOGENOM; HOG000181428; -. DR KO; K11708; -. DR OMA; MTETLLF; -. DR BioCyc; NMAR436308:GI3J-345-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; IEA:InterPro. DR Gene3D; 1.10.3470.10; -; 1. DR InterPro; IPR001626; ABC_3. DR InterPro; IPR029022; ABC_BtuC-like. DR Pfam; PF00950; ABC-3; 1. DR SUPFAM; SSF81345; SSF81345; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 47 67 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 73 91 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 103 123 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 143 168 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 189 207 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 237 254 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 266 289 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 314 AA; 33186 MW; 22489D3101DABF20 CRC64; MVLEEILTIF VGIFTDYTLR YVALGSAILG ITSGALGCFT VLRKQSLFGD ALAHAALPGI GFAYLFAGTK DSLLLMLGAA VFAWFGGIVT LTITSTTRIK QDAALGITLS VFFGLGIVLL TYLQSIGGAS QGGLDRFLFG QAAALIETDI INLGILAAGC FVVLIIFFKE LKIATFDSVF GQSLGFPTKY FSALLTSVIV VAVVIGLHTV GVVLMVSMLI APAAAARQWI SSLKSMLILS AIFGGVSGVI GSMISSTTEG MSTGPVIVIT ITTILGISLF FSPKNGYLFQ YIRKRKQRQS NFNEINTISG ENSN // ID A9A1Z4_NITMS Unreviewed; 217 AA. AC A9A1Z4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Siroheme synthase {ECO:0000313|EMBL:ABX12407.1}; GN OrderedLocusNames=Nmar_0511 {ECO:0000313|EMBL:ABX12407.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12407.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12407.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12407.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12407.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0511; -. DR EnsemblBacteria; ABX12407; ABX12407; Nmar_0511. DR KEGG; nmr:Nmar_0511; -. DR eggNOG; arCOG01044; Archaea. DR eggNOG; COG1648; LUCA. DR HOGENOM; HOG000108925; -. DR KO; K02304; -. DR OMA; KSPAMTV; -. DR BioCyc; NMAR436308:GI3J-532-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043115; F:precorrin-2 dehydrogenase activity; IEA:InterPro. DR GO; GO:0019354; P:siroheme biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR006367; Sirohaem_synthase_N. DR Pfam; PF13241; NAD_binding_7; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01470; cysG_Nterm; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 115 NAD_binding_7. FT {ECO:0000259|Pfam:PF13241}. SQ SEQUENCE 217 AA; 24612 MW; 4C57B97C792D2F93 CRC64; MIVDLNLQGK SVIVIGGGNE AQKRINSLIK EKCNIIVISN KVTPQISRLV KSKKIQLKKQ NIQDTKFISK LKPDIIITTT DDKKLNQKII NIGKKKKIIT YSSDNPDESD FSNPAIIDFE KMIQIAIFTG GRSPAMSKKL KRKSEELFRK IITKEDIGQI KIQKIARGAA KEKIPTPTER KACLRSIMAD NEIDQLIKDS QMKKAEKRAI TIVRNWK // ID A9A125_NITMS Unreviewed; 81 AA. AC A9A125; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Like-Sm ribonucleoprotein core {ECO:0000313|EMBL:ABX11986.1}; GN OrderedLocusNames=Nmar_0086 {ECO:0000313|EMBL:ABX11986.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11986.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11986.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11986.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11986.1; -; Genomic_DNA. DR ProteinModelPortal; A9A125; -. DR STRING; 436308.Nmar_0086; -. DR EnsemblBacteria; ABX11986; ABX11986; Nmar_0086. DR KEGG; nmr:Nmar_0086; -. DR eggNOG; arCOG00998; Archaea. DR eggNOG; COG1958; LUCA. DR HOGENOM; HOG000223550; -. DR KO; K04796; -. DR OMA; ANYGRVI; -. DR BioCyc; NMAR436308:GI3J-87-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005732; C:small nucleolar ribonucleoprotein complex; IEA:InterPro. DR GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW. DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro. DR InterPro; IPR016487; Lsm6/sSmF. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR001163; LSM_dom_euk/arc. DR Pfam; PF01423; LSM; 1. DR PIRSF; PIRSF006609; snRNP_SmF; 1. DR SMART; SM00651; Sm; 1. DR SUPFAM; SSF50182; SSF50182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX11986.1}; KW Viral nucleoprotein {ECO:0000313|EMBL:ABX11986.1}; KW Virion {ECO:0000313|EMBL:ABX11986.1}. FT DOMAIN 12 77 Sm. {ECO:0000259|SMART:SM00651}. SQ SEQUENCE 81 AA; 9274 MW; 11F61767506E932D CRC64; MSQSNSAKRP LTTLQKSTKK KVTVRLKNEV EYKGKMDNVD SYMNLIMTDA EELHEGKTIA NYGRVIVRGN NVLFIKLENE L // ID A9A3C1_NITMS Unreviewed; 188 AA. AC A9A3C1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 43. DE SubName: Full=NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABX12550.1}; GN OrderedLocusNames=Nmar_0654 {ECO:0000313|EMBL:ABX12550.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12550.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12550.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12550.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12550.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3C1; -. DR STRING; 436308.Nmar_0654; -. DR EnsemblBacteria; ABX12550; ABX12550; Nmar_0654. DR KEGG; nmr:Nmar_0654; -. DR eggNOG; arCOG04624; Archaea. DR eggNOG; COG0431; LUCA. DR HOGENOM; HOG000263121; -. DR OMA; LEWWANA; -. DR BioCyc; NMAR436308:GI3J-679-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.360; -; 1. DR InterPro; IPR029039; Flavoprotein-like_dom. DR InterPro; IPR005025; FMN_Rdtase-like. DR Pfam; PF03358; FMN_red; 1. DR SUPFAM; SSF52218; SSF52218; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 143 FMN_red. {ECO:0000259|Pfam:PF03358}. SQ SEQUENCE 188 AA; 21739 MW; C33ED118D8124946 CRC64; MNIAVILGSL RKDRNGERVG RYITKKIQDR RHKVSVVDPM ELDLPILDRM YKEMENPESK FQKLHDMIIS ADGYVPITPE YNHTISAALK NTLDYCLEEY FFKPSAIVSY SVGSFGGINA AQHLRHIFAE LGSPSIPSSL QISKVHEAFD ESGNLLHQEY EKRIERFLDE FEWYLNALKN QREKGTPY // ID A9A4R0_NITMS Unreviewed; 153 AA. AC A9A4R0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13038.1}; GN OrderedLocusNames=Nmar_1142 {ECO:0000313|EMBL:ABX13038.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13038.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13038.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13038.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13038.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4R0; -. DR STRING; 436308.Nmar_1142; -. DR EnsemblBacteria; ABX13038; ABX13038; Nmar_1142. DR KEGG; nmr:Nmar_1142; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR HOGENOM; HOG000104906; -. DR OMA; HCQPHPW; -. DR BioCyc; NMAR436308:GI3J-1174-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 81 149 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 153 AA; 16938 MW; 90640600D5CE2B8E CRC64; MSTPTSSHAY GIGLITLLVG LSASVVFYTS FYLPESLAKP SVSENILEPE KELIIEIVPG AVIEGNESYV PNKATALLTI NNKVIWKNND DTAHTVTPDH RYTDGFSGEF GSTGVLKPGD TYEFLFTEEQ EIPYHCQPHP WMKGKISVEK SRF // ID A9A4X8_NITMS Unreviewed; 507 AA. AC A9A4X8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 53. DE RecName: Full=tRNA-guanine(15) transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; DE EC=2.4.2.48 {ECO:0000256|HAMAP-Rule:MF_01634}; DE AltName: Full=7-cyano-7-deazaguanine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01634}; DE AltName: Full=Archaeal tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_01634}; GN Name=tgtA {ECO:0000256|HAMAP-Rule:MF_01634}; GN OrderedLocusNames=Nmar_1536 {ECO:0000313|EMBL:ABX13432.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13432.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13432.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13432.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Exchanges the guanine residue with 7-cyano-7- CC deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D- CC loop) of archaeal tRNAs. {ECO:0000256|HAMAP-Rule:MF_01634}. CC -!- CATALYTIC ACTIVITY: Guanine(15) in tRNA + 7-cyano-7-carbaguanine = CC 7-cyano-7-carbaguanine(15) in tRNA + guanine. {ECO:0000256|HAMAP- CC Rule:MF_01634}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01634}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_01634}; CC -!- PATHWAY: tRNA modification; archaeosine-tRNA biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_01634}. CC -!- SIMILARITY: Belongs to the archaeosine tRNA-ribosyltransferase CC family. {ECO:0000256|HAMAP-Rule:MF_01634}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13432.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X8; -. DR STRING; 436308.Nmar_1536; -. DR EnsemblBacteria; ABX13432; ABX13432; Nmar_1536. DR KEGG; nmr:Nmar_1536; -. DR eggNOG; arCOG00989; Archaea. DR eggNOG; COG0343; LUCA. DR HOGENOM; HOG000231009; -. DR KO; K18779; -. DR OMA; AFFYTGP; -. DR BioCyc; NMAR436308:GI3J-1578-MONOMER; -. DR UniPathway; UPA00393; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008479; F:queuine tRNA-ribosyltransferase activity; IEA:InterPro. DR GO; GO:0008616; P:queuosine biosynthetic process; IEA:InterPro. DR GO; GO:0006400; P:tRNA modification; IEA:InterPro. DR Gene3D; 3.20.20.105; -; 1. DR HAMAP; MF_01634; TgtA_arch; 1. DR InterPro; IPR004804; TgtA. DR InterPro; IPR002616; tRNA_ribo_trans-like. DR Pfam; PF01702; TGT; 1. DR SUPFAM; SSF51713; SSF51713; 1. DR TIGRFAMs; TIGR00432; arcsn_tRNA_tgt; 1. DR TIGRFAMs; TIGR00449; tgt_general; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosyltransferase {ECO:0000256|HAMAP-Rule:MF_01634, KW ECO:0000313|EMBL:ABX13432.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01634}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01634, KW ECO:0000313|EMBL:ABX13432.1}; KW tRNA processing {ECO:0000256|HAMAP-Rule:MF_01634}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_01634}. FT ACT_SITE 89 89 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_01634}. FT METAL 276 276 Zinc. {ECO:0000256|HAMAP-Rule:MF_01634}. FT METAL 278 278 Zinc. {ECO:0000256|HAMAP-Rule:MF_01634}. FT METAL 281 281 Zinc. {ECO:0000256|HAMAP-Rule:MF_01634}. FT BINDING 124 124 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01634}. SQ SEQUENCE 507 AA; 58210 MW; 37E32D9ADE300914 CRC64; MKIYLFEISK TDLAGRIGTI DTNHGKIETP AYVPVIHPVK QTIPSKKIKE IGFDLVITNA YITRNNYGDK AVKKGIHKII DYDRGIMTDS GGYQVLEYGD VPVAPTEMAE FEQGIMTDFA IPLDKPTGFG LPIKKAEAYV KHTLKVCKQT IEDSKDNGQI WIGPIQGGEH FDLVAKSTKG LIKMGYKMLA LGSPVEFMES YEYRLLAQMI IAAKKQIPHN IPLHLFGAGH PLTIPFAVAL GCDTFDSASY MLYAKQNRYI TEDGTRDLSD IVVFPCNCEI CTKYTPDELR QLESIEKINQ IAIHNLHAIK LEVDKVKQAI HEGRLWEYVI KKARAHPKLF EMVEVMTENS EFLKIGTPKF KERAIFLFDK EDQFRPEVQV FHEIVRGFKS KKEKILITNE SSTKPGYLSH QFVNLSKKLK DFEEVQICQY NPQLGLIPIE ISDIFPAAHH ETSRMNFDPK EFTEFEKTWK IFFENNKFSE IRYNKDDEFL KYFVKTLPKN IKKKSFL // ID A9A522_NITMS Unreviewed; 157 AA. AC A9A522; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11931.1}; GN OrderedLocusNames=Nmar_0031 {ECO:0000313|EMBL:ABX11931.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11931.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11931.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11931.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11931.1; -; Genomic_DNA. DR EnsemblBacteria; ABX11931; ABX11931; Nmar_0031. DR KEGG; nmr:Nmar_0031; -. DR eggNOG; arCOG10512; Archaea. DR eggNOG; ENOG41111MM; LUCA. DR BioCyc; NMAR436308:GI3J-31-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 62 131 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 157 AA; 17954 MW; 56CE89D834BEDCFA CRC64; MFDKFKKEEG GEMVEERPED NTEQEAAPES TVSETPSQIG IGELMGKRAQ LEEAIDYVGL MIKNLKDKRT LLEKDIEEES VDIKNLKEKL QKVNEYIEEE NRGISELAEK RKQVEAEADE VGTIINNLRE KLSGVDRIID DEGSRVRKIK ESREASE // ID A9A596_NITMS Unreviewed; 238 AA. AC A9A596; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE SubName: Full=Ribosomal protein S5 {ECO:0000313|EMBL:ABX12295.1}; GN OrderedLocusNames=Nmar_0399 {ECO:0000313|EMBL:ABX12295.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12295.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12295.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12295.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S5P family. CC {ECO:0000256|RuleBase:RU003823}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12295.1; -; Genomic_DNA. DR ProteinModelPortal; A9A596; -. DR STRING; 436308.Nmar_0399; -. DR EnsemblBacteria; ABX12295; ABX12295; Nmar_0399. DR KEGG; nmr:Nmar_0399; -. DR eggNOG; arCOG04087; Archaea. DR eggNOG; COG0098; LUCA. DR HOGENOM; HOG000072596; -. DR KO; K02988; -. DR OMA; GIKDVWT; -. DR BioCyc; NMAR436308:GI3J-416-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 3.30.160.20; -; 1. DR Gene3D; 3.30.230.10; -; 1. DR InterPro; IPR014720; dsRBD_dom. DR InterPro; IPR000851; Ribosomal_S5. DR InterPro; IPR005324; Ribosomal_S5_C. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR005711; Ribosomal_S5_euk/arc. DR InterPro; IPR013810; Ribosomal_S5_N. DR InterPro; IPR018192; Ribosomal_S5_N_CS. DR PANTHER; PTHR13718; PTHR13718; 1. DR Pfam; PF00333; Ribosomal_S5; 1. DR Pfam; PF03719; Ribosomal_S5_C; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR TIGRFAMs; TIGR01020; uS5_euk_arch; 1. DR PROSITE; PS00585; RIBOSOMAL_S5; 1. DR PROSITE; PS50881; S5_DSRBD; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|RuleBase:RU003823, KW ECO:0000313|EMBL:ABX12295.1}; KW Ribosomal protein {ECO:0000256|RuleBase:RU003823, KW ECO:0000313|EMBL:ABX12295.1}. FT DOMAIN 87 150 S5 DRBM. {ECO:0000259|PROSITE:PS50881}. SQ SEQUENCE 238 AA; 25386 MW; 27A0F2B4B9E86CF8 CRC64; MSQTTESKPQ GGQKGKGAPT YGGGRPDGAK GGDRPRRRRE PEEEVWVPKT ILGQKVASGE ISSLEEIIEL GLRIQEAGII KKLLPDLKSE VVDVGIIQKM TSNGQSTRFK AIVATGNENG YLGIGQGKSK QMRIAIEKAT NAAYLNVNPI KMGCGSWECR CDQKHSVPFK VKGKGGSVTI EIIPAPRGLG LVAGGKIKRL LELAGLKDAW TTAKGSTPTM NSTSKAILDC LRQTFSQG // ID A9A2D9_NITMS Unreviewed; 532 AA. AC A9A2D9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 48. DE SubName: Full=Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:ABX12850.1}; DE EC=5.4.99.2 {ECO:0000313|EMBL:ABX12850.1}; GN OrderedLocusNames=Nmar_0954 {ECO:0000313|EMBL:ABX12850.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12850.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12850.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12850.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12850.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2D9; -. DR STRING; 436308.Nmar_0954; -. DR EnsemblBacteria; ABX12850; ABX12850; Nmar_0954. DR KEGG; nmr:Nmar_0954; -. DR eggNOG; arCOG04232; Archaea. DR eggNOG; COG1884; LUCA. DR HOGENOM; HOG000003918; -. DR KO; K01848; -. DR OMA; SLHTNGK; -. DR BioCyc; NMAR436308:GI3J-982-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031419; F:cobalamin binding; IEA:InterPro. DR GO; GO:0004494; F:methylmalonyl-CoA mutase activity; IEA:UniProtKB-EC. DR Gene3D; 3.20.20.240; -; 1. DR InterPro; IPR016176; Cbl-dep_enz_cat. DR InterPro; IPR014348; Cbl-dep_enz_cat-sub. DR InterPro; IPR006099; MeMalonylCoA_mutase_a/b_cat. DR InterPro; IPR006098; MMCoA_mutase_a_cat. DR Pfam; PF01642; MM_CoA_mutase; 1. DR SUPFAM; SSF51703; SSF51703; 1. DR TIGRFAMs; TIGR00641; acid_CoA_mut_N; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12850.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 524 METMALONYL_COA_MUTASE. FT {ECO:0000259|Pfam:PF01642}. SQ SEQUENCE 532 AA; 59595 MW; B2AFA3DA3CE2C90C CRC64; MAAKKSKSKQ PEKKVFTDSN FPVKRIYQKS SKKKPSEDSG KYPFTRGIHP GMFRDRFWTM RQYSGFGDAK LTNERFKFML EKGQTGLSMA FDLPTQIGYD SDAPQAEGEV GKVGVSITSI KDMMTAFDGI PLGKVSSSMT INSTASTLLA YYIAVGESQG FKSHELRGTT QNDILKEYIA RNTYIYPPQP SMRLIGDMIG YCAEKVPSWY PVSISGYHMR EAGCTATQEV AFTLANAIAY IQTCLDKGLK IDDFAPRLSF FFCCTIEFFE EVAKFRVARK VYAKILKEMF NAKNPKSLQL KFHTQTSGES LTAQQPDNNI IRVAIQTMAA VAGGTQSLHT NSRDEALALP TQESAKIALR TQQIVAHESG ITKTADPLGG SYYLEELSDQ IEDGVWKYLK KIQKMGGSVK AIEKGFFQSE IRQNAYRLKK ETDDGERVLV GVNKYAEEEE QPELLRIGGK VEIQQKKALK QLRASRDKKK WEKALSAMQS AAETDENLMP YIITAAKAFA TTGEISNAFR EVFGEYRPKE VF // ID A9A5X5_NITMS Unreviewed; 356 AA. AC A9A5X5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Aminotransferase class I and II {ECO:0000313|EMBL:ABX13453.1}; GN OrderedLocusNames=Nmar_1557 {ECO:0000313|EMBL:ABX13453.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13453.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13453.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13453.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|RuleBase:RU003693}; CC -!- SIMILARITY: Belongs to the class-II pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU003693}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13453.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X5; -. DR STRING; 436308.Nmar_1557; -. DR EnsemblBacteria; ABX13453; ABX13453; Nmar_1557. DR KEGG; nmr:Nmar_1557; -. DR eggNOG; arCOG04273; Archaea. DR eggNOG; COG0079; LUCA. DR HOGENOM; HOG000111020; -. DR KO; K00817; -. DR OMA; PNGDRLK; -. DR BioCyc; NMAR436308:GI3J-1600-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004400; F:histidinol-phosphate transaminase activity; IEA:InterPro. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR001917; Aminotrans_II_pyridoxalP_BS. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR005861; HisP_aminotrans. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR01141; hisC; 1. DR PROSITE; PS00599; AA_TRANSFER_CLASS_2; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX13453.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU003693}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13453.1}. FT DOMAIN 28 348 Aminotran_1_2. FT {ECO:0000259|Pfam:PF00155}. SQ SEQUENCE 356 AA; 40009 MW; 06BE3CC611794325 CRC64; MKNSWYEKKL EDFAKLGGYK KPEKFDDVLK LDSNENFVIS KKFQQDVIAY AKSNSDVREY PLGGVEKLVS KLAKYLKVSE NMIGVGNGSD QILDLFLANM ASKKTRILTS DPTFGFFEER CKLYAIPCTK IPFSSDMKLD IEKFNSNLKK CHILYLDSPN NPTGFQFSKA QLESLIKKFD GLVIIDEAYG EFGDSSIVSL TKKYDNLIVV KTFSKAFGLA GLRIGYFVAN KKIVEVFNQV LQYPYPLNTL AIEAGIASLD KVDQMKEASE IIKSERKKII ENLRKYDAFT VFDSNANFVL FDAKGADKRV FSALVEQGIS IRKLGKIGSH SGCLRVTVGT KEMNSKFLLA IRDLLG // ID A9A3U3_NITMS Unreviewed; 130 AA. AC A9A3U3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13355.1}; GN OrderedLocusNames=Nmar_1459 {ECO:0000313|EMBL:ABX13355.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13355.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13355.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13355.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13355.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1459; -. DR EnsemblBacteria; ABX13355; ABX13355; Nmar_1459. DR KEGG; nmr:Nmar_1459; -. DR BioCyc; NMAR436308:GI3J-1496-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 130 AA; 14862 MW; 57D384A9F539FFC3 CRC64; MKTKPLIIIG VIGVVLSFFV ITGFLVFVMG PLTHQQIDEY QSNELVQQFR ETYPLSGITS MSGTLFEKEI SFTYSKNARY VSLTFSDSLD GQQITYKCER IISSQEPVEI FYFEEPTIQT IKDNVCGEYD // ID A9A1E5_NITMS Unreviewed; 127 AA. AC A9A1E5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13124.1}; GN OrderedLocusNames=Nmar_1228 {ECO:0000313|EMBL:ABX13124.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13124.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13124.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13124.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13124.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1E5; -. DR STRING; 436308.Nmar_1228; -. DR EnsemblBacteria; ABX13124; ABX13124; Nmar_1228. DR KEGG; nmr:Nmar_1228; -. DR eggNOG; arCOG04488; Archaea. DR eggNOG; COG2164; LUCA. DR HOGENOM; HOG000230272; -. DR KO; K09143; -. DR OMA; RDLAVIW; -. DR BioCyc; NMAR436308:GI3J-1261-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR029000; Cyclophilin-like_dom. DR InterPro; IPR025658; Cyclophilin_TM1367. DR Pfam; PF04126; Cyclophil_like; 1. DR SUPFAM; SSF50891; SSF50891; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 125 Cyclophil_like. FT {ECO:0000259|Pfam:PF04126}. SQ SEQUENCE 127 AA; 13946 MW; E6D5EA9605F1DAD1 CRC64; MKHKIHIDVE SSKIILKLDD TYSPKTVNEF VEKLPFTVDL NVWGDEIYSS KSPITQPEEN AKSPVELNDV AYWPTGKAIC LFYGPTPIGN PGEITPASPV NVIGKVVSPD KSILSMVDGT KATFRKA // ID A9A1N8_NITMS Unreviewed; 93 AA. AC A9A1N8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13553.1}; GN OrderedLocusNames=Nmar_1657 {ECO:0000313|EMBL:ABX13553.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13553.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13553.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13553.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13553.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1657; -. DR EnsemblBacteria; ABX13553; ABX13553; Nmar_1657. DR KEGG; nmr:Nmar_1657; -. DR BioCyc; NMAR436308:GI3J-1702-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 93 AA; 11221 MW; 9C27512AC18BC482 CRC64; MKHIILLGIL AVSIVIGFFS IQYIMDSDFD MMKMFCEKHD DQMYELAEKM RDVRLLQKEP NLGSDEYDRL EQEFQKFTDQ ALERKKWYVE NCV // ID A9A405_NITMS Unreviewed; 72 AA. AC A9A405; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Transcription regulator containing HTH domain-like protein {ECO:0000313|EMBL:ABX12189.1}; GN OrderedLocusNames=Nmar_0293 {ECO:0000313|EMBL:ABX12189.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12189.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12189.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12189.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12189.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0293; -. DR EnsemblBacteria; ABX12189; ABX12189; Nmar_0293. DR KEGG; nmr:Nmar_0293; -. DR eggNOG; arCOG04189; Archaea. DR eggNOG; COG5625; LUCA. DR HOGENOM; HOG000109785; -. DR OMA; LSEWSPI; -. DR BioCyc; NMAR436308:GI3J-305-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 34 59 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 72 AA; 7772 MW; A4D66194AB16F163 CRC64; MDKRKGMGIT IFVLCIGGFF LYAYLLMLSE WSPIVLQLSV LMIAGGILGV VAWIGYVMAT TKPSPASITS DD // ID A9A1N9_NITMS Unreviewed; 263 AA. AC A9A1N9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX13554.1}; GN OrderedLocusNames=Nmar_1658 {ECO:0000313|EMBL:ABX13554.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13554.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13554.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13554.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13554.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1N9; -. DR STRING; 436308.Nmar_1658; -. DR EnsemblBacteria; ABX13554; ABX13554; Nmar_1658. DR KEGG; nmr:Nmar_1658; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000106554; -. DR OMA; DIECPFC; -. DR BioCyc; NMAR436308:GI3J-1703-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 39 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 57 262 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 263 AA; 29491 MW; B21A28A5AD3B1FF0 CRC64; MESKENVNKI IVKKSTFTSL VVVLVITIAI SAFFAGNYVS NMNSDKVTQS DLNNAFAKLE EKIGTSTQPS IQPNTQPIKV SIDDDPMKGD PNAPITIIEF SDYECPFCGK FYTDTLPLIE ENYINTGKVN FVYRDFPIQS IHPNAVHTAM AAECADDQEM FWPYHDMIFE NKSTWEKQRG QSLVSELVQY ADVLGLDTEE FTTCLESNKH LDEVRNDLQD GQSYGISGTP GFFIGNDNSG YIKVSGAKPY QTFAEILEGM LRR // ID A9A5F1_NITMS Unreviewed; 72 AA. AC A9A5F1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12662.1}; GN OrderedLocusNames=Nmar_0766 {ECO:0000313|EMBL:ABX12662.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12662.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12662.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12662.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12662.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0766; -. DR EnsemblBacteria; ABX12662; ABX12662; Nmar_0766. DR KEGG; nmr:Nmar_0766; -. DR eggNOG; arCOG10547; Archaea. DR eggNOG; ENOG4110ZV9; LUCA. DR BioCyc; NMAR436308:GI3J-792-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 72 AA; 8326 MW; C033E4B8DA472B09 CRC64; MNEQEQLMDN LLNVDLEIID VVRELQQGNW ESDSHKKQVG DLLQIRDEMV QKLMAATGTN TQCDCGHDHH HE // ID A9A4D0_NITMS Unreviewed; 315 AA. AC A9A4D0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12619.1}; GN OrderedLocusNames=Nmar_0723 {ECO:0000313|EMBL:ABX12619.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12619.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12619.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12619.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12619.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0723; -. DR EnsemblBacteria; ABX12619; ABX12619; Nmar_0723. DR KEGG; nmr:Nmar_0723; -. DR eggNOG; arCOG08796; Archaea. DR eggNOG; ENOG41110WK; LUCA. DR OMA; YLSANEE; -. DR BioCyc; NMAR436308:GI3J-749-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.40.1120; -; 1. DR InterPro; IPR008969; CarboxyPept-like_regulatory. DR InterPro; IPR014766; CarboxyPept_regulatory_dom. DR SUPFAM; SSF49464; SSF49464; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 315 AA; 35759 MW; FA57076B89DABCAB CRC64; MYKKAGIVGI FSVLMIFSTI QTSEAELLDF VIDLHVEKGA IVSGETLVVS GKVVDHAYKP IRGAEVLVRT GSETTKTFTD PWGVFRAEFE NFERVPGTYT INVIANWYGM TGLETTQVQV KGDASAVSLL QQKLNTEEAK KYLSANEEDF EKDPIGQMLF KYYHGLLQEL ILENKEALQP NEEELYVEEQ RSIAEAFREE AIDEYKPSNG VFEGLNYEYY VSNLNSEIRD MVVSQLNFTK NIFEEAQIVK AQIIANGGTY EEAQQAYLEM LSVPKEKLEE FNDQKLKELE NPEVSSEEEE VSSEEEEVSS EEKND // ID A9A1W6_NITMS Unreviewed; 53 AA. AC A9A1W6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12087.1}; GN OrderedLocusNames=Nmar_0191 {ECO:0000313|EMBL:ABX12087.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12087.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12087.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12087.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12087.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0191; -. DR EnsemblBacteria; ABX12087; ABX12087; Nmar_0191. DR KEGG; nmr:Nmar_0191; -. DR eggNOG; arCOG08759; Archaea. DR eggNOG; ENOG4110ZRY; LUCA. DR HOGENOM; HOG000108781; -. DR OMA; DGPHDCT; -. DR BioCyc; NMAR436308:GI3J-194-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 53 AA; 5985 MW; BCB0F309D80A0ADD CRC64; MDSCATGDTQ EICWFCRKGR HEDCMKEIPT QGKSDGPHDC TFDTKLIPCK CNC // ID A9A2Q3_NITMS Unreviewed; 457 AA. AC A9A2Q3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13580.1}; GN OrderedLocusNames=Nmar_1684 {ECO:0000313|EMBL:ABX13580.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13580.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13580.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13580.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13580.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1684; -. DR EnsemblBacteria; ABX13580; ABX13580; Nmar_1684. DR KEGG; nmr:Nmar_1684; -. DR eggNOG; arCOG08795; Archaea. DR eggNOG; ENOG41111FA; LUCA. DR HOGENOM; HOG000110075; -. DR OMA; FESEQEQ; -. DR BioCyc; NMAR436308:GI3J-1729-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR027560; PEFG-CTERM. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 427 446 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 457 AA; 51552 MW; 57A9DE1D9D745593 CRC64; MMSITKLSIL ALAACLLFPA SSVYGHGLGI DTISSVDVAG KEISISVEMP MYFESEQEQI TITATDKETD EPAKNVTFLI GLFHSNEMIF RNYFFTENGV LPITVLSQQG YDNFVINGEQ DSLLGAYHAT ESSPIEIAGP VFDSGGLFTF EIEVRTIDEP TNIIEDSGVY RADLTLVETT SHPQEDTEGN DVEFRMKSYF DKIQNFQYDP ATKQVTFEMP FDWSENSMSH VTVVHEEVHF PKHFIEFLSP SYSGYANGIE LFKASVSIDD YTEEDERIVH FVLLQDHLRF IKNEMKKSDE PLPDNIVFTL TTNEKISFPL EAFTKSEDFK VNLSWDPIDL EPGVETNFVF TIRDGWTNEP LRNSDYSFVI IQNGAELYRV SGTATVGGEF EKFTFAEDQT GPTTIKFENI RNTGQETEFG IMVAPEFGTI AILILVVSII GIIVIARKYE TFSLIRM // ID A9A487_NITMS Unreviewed; 265 AA. AC A9A487; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE RecName: Full=Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; GN OrderedLocusNames=Nmar_0680 {ECO:0000313|EMBL:ABX12576.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12576.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12576.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12576.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 2 rhodanese domains. CC {ECO:0000256|RuleBase:RU000507}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12576.1; -; Genomic_DNA. DR ProteinModelPortal; A9A487; -. DR STRING; 436308.Nmar_0680; -. DR EnsemblBacteria; ABX12576; ABX12576; Nmar_0680. DR KEGG; nmr:Nmar_0680; -. DR eggNOG; arCOG02019; Archaea. DR eggNOG; COG2897; LUCA. DR HOGENOM; HOG000106025; -. DR KO; K01011; -. DR OMA; ITESEYM; -. DR BioCyc; NMAR436308:GI3J-705-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004792; F:thiosulfate sulfurtransferase activity; IEA:InterPro. DR Gene3D; 3.40.250.10; -; 2. DR InterPro; IPR001763; Rhodanese-like_dom. DR InterPro; IPR001307; Thiosulphate_STrfase_CS. DR Pfam; PF00581; Rhodanese; 2. DR SMART; SM00450; RHOD; 2. DR SUPFAM; SSF52821; SSF52821; 2. DR PROSITE; PS00380; RHODANESE_1; 1. DR PROSITE; PS50206; RHODANESE_3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU000507}. FT DOMAIN 19 119 Rhodanese. {ECO:0000259|PROSITE:PS50206}. FT DOMAIN 149 253 Rhodanese. {ECO:0000259|PROSITE:PS50206}. SQ SEQUENCE 265 AA; 29841 MW; AED55BB6BFA53ACF CRC64; MTESGNITTD VDSLRSEIRD KSVRVIDVRR EDDYKKDHIS TAVNLPLANL LSDDSPERVV KLVNSMGIDD ETRVVVYDDT FGALASRVAW TLEYLGHSDV SLLETTYSNW KSLGLESDSD TPDIQSKEHS MNLQSDILAT SDYLESAKER DDVILIDNRE RLNFLEQHIP GAISLPYRTL ASNDKILRPK EDMKRLLDNR GVSGNTEIIT YCGSVGTLSG LAYYALKTAG LPNAKLYVRS FKEWKNLQKP TAKQEDANYW DLSAE // ID A9A628_NITMS Unreviewed; 185 AA. AC A9A628; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 37. DE SubName: Full=Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:ABX13506.1}; GN OrderedLocusNames=Nmar_1610 {ECO:0000313|EMBL:ABX13506.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13506.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13506.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13506.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13506.1; -; Genomic_DNA. DR ProteinModelPortal; A9A628; -. DR STRING; 436308.Nmar_1610; -. DR EnsemblBacteria; ABX13506; ABX13506; Nmar_1610. DR KEGG; nmr:Nmar_1610; -. DR eggNOG; arCOG01471; Archaea. DR eggNOG; COG3945; LUCA. DR HOGENOM; HOG000109918; -. DR OMA; TEHLWKE; -. DR BioCyc; NMAR436308:GI3J-1654-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR012312; Haemerythrin-like. DR Pfam; PF01814; Hemerythrin; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 136 Hemerythrin. {ECO:0000259|Pfam:PF01814}. SQ SEQUENCE 185 AA; 21081 MW; 77BF1253EB72CB01 CRC64; MSTASLRRDH ELIEKVVKAM DATIQLLNEN KQIPESILLP VIDFSKNFTD VCHHSKEENS LFPALEQAGL PKNMGPIAMM LIDHERSREI ASNMEASAKE YLSSGESAKL ISDMKQYVEH ITEHLWKENN RLFMMAEARL QYVAQKVDGE LNEIEAAKLK DLGKSRQHYE DLAENLTRDV AEQGK // ID A9A222_NITMS Unreviewed; 148 AA. AC A9A222; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12435.1}; GN OrderedLocusNames=Nmar_0539 {ECO:0000313|EMBL:ABX12435.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12435.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12435.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12435.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12435.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0539; -. DR EnsemblBacteria; ABX12435; ABX12435; Nmar_0539. DR KEGG; nmr:Nmar_0539; -. DR eggNOG; arCOG08683; Archaea. DR eggNOG; ENOG41111NN; LUCA. DR OMA; RISEQYI; -. DR BioCyc; NMAR436308:GI3J-561-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 50 71 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 102 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 114 135 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 148 AA; 16504 MW; 213516B1DEE4806F CRC64; MQLEYWLGLG SIAFFVLFVL VVSSLYIFMF DDPNTSDLPI DPDNFANPKL LQFISITIAP GGILAAVAFI LSKYYGSKKI GALLIIDGLV LLGGMAFCQT LIDDIAEPYI TDTVLILPPL FMGLSIPIFF FGIRLMKVRK PRPKKEYF // ID A9A1X4_NITMS Unreviewed; 83 AA. AC A9A1X4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12095.1}; GN OrderedLocusNames=Nmar_0199 {ECO:0000313|EMBL:ABX12095.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12095.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12095.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12095.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12095.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0199; -. DR EnsemblBacteria; ABX12095; ABX12095; Nmar_0199. DR KEGG; nmr:Nmar_0199; -. DR eggNOG; arCOG10519; Archaea. DR eggNOG; ENOG411103B; LUCA. DR OMA; NNESHTE; -. DR BioCyc; NMAR436308:GI3J-203-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 83 AA; 9593 MW; 6F3C8CF5B3B2CDF4 CRC64; MTEFSSEEKI ILIQYGIKKY EDEATLLEKL KSILSEKDIQ RNIDTLIGTQ RVRRIGPEIL QNNESHTELP ELPDNLKPVI DSL // ID A9A227_NITMS Unreviewed; 134 AA. AC A9A227; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=NUDIX hydrolase {ECO:0000313|EMBL:ABX12440.1}; GN OrderedLocusNames=Nmar_0544 {ECO:0000313|EMBL:ABX12440.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12440.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12440.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12440.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12440.1; -; Genomic_DNA. DR ProteinModelPortal; A9A227; -. DR STRING; 436308.Nmar_0544; -. DR EnsemblBacteria; ABX12440; ABX12440; Nmar_0544. DR KEGG; nmr:Nmar_0544; -. DR eggNOG; arCOG01127; Archaea. DR eggNOG; ENOG4111YN2; LUCA. DR HOGENOM; HOG000105560; -. DR OMA; EYHDTAL; -. DR BioCyc; NMAR436308:GI3J-566-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.79.10; -; 1. DR InterPro; IPR000086; NUDIX_hydrolase_dom. DR InterPro; IPR015797; NUDIX_hydrolase_dom-like. DR Pfam; PF00293; NUDIX; 1. DR SUPFAM; SSF55811; SSF55811; 1. DR PROSITE; PS51462; NUDIX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12440.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 134 Nudix hydrolase. FT {ECO:0000259|PROSITE:PS51462}. SQ SEQUENCE 134 AA; 15716 MW; 213433FA2DEAAE71 CRC64; MRSTKIVTSF IKDNEKLLIL KRSADVKTMK GLWAGISGII EKNEEPLKRA KIEIFEEVGI TEDEITLLKS AEEMRVNSPQ YQNHEWKIFP FLFEAKNPTI KLNWENSDFK WINVEELKNY ETVPSLDKVL FNLL // ID A9A380_NITMS Unreviewed; 313 AA. AC A9A380; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Integrase family protein {ECO:0000313|EMBL:ABX12509.1}; GN OrderedLocusNames=Nmar_0613 {ECO:0000313|EMBL:ABX12509.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12509.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12509.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12509.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12509.1; -; Genomic_DNA. DR ProteinModelPortal; A9A380; -. DR STRING; 436308.Nmar_0613; -. DR EnsemblBacteria; ABX12509; ABX12509; Nmar_0613. DR KEGG; nmr:Nmar_0613; -. DR eggNOG; arCOG01241; Archaea. DR eggNOG; COG0582; LUCA. DR BioCyc; NMAR436308:GI3J-637-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 129 284 Phage_integrase. FT {ECO:0000259|Pfam:PF00589}. SQ SEQUENCE 313 AA; 37113 MW; C94B47B54DBB7A73 CRC64; MQSFLLKNKS KKSFLEGIQS LQFSTRENYQ AGINRFEEFC KFAYDGRDIN EIIKELKRIP FEQRDQAYFD VLQDFVNWLE NQKLASATVK MYYQIATYYC SYNGIRAHPI DLKHNIKKPK KIKEKLHPLS KDEILKLFEF TPKSRLMLYL VLIGTGMRIQ ETVSLKKADF DFSLKRIKIE IPGKYTKTRV SHTTFVSKEA EKMLKPHLES LSENTLVFAT NSYPFHAKMT EIEAFARYRK RAGLTEKYTS VNRHKFTLHS FRSYFFTRAR RIHDTDIAHA MVGHVTYLDM YDRKDDDEKL ELFLKVEPSL KIF // ID A9A5L0_NITMS Unreviewed; 287 AA. AC A9A5L0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 44. DE SubName: Full=Band 7 protein {ECO:0000313|EMBL:ABX12721.1}; GN OrderedLocusNames=Nmar_0825 {ECO:0000313|EMBL:ABX12721.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12721.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12721.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12721.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12721.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5L0; -. DR STRING; 436308.Nmar_0825; -. DR EnsemblBacteria; ABX12721; ABX12721; Nmar_0825. DR KEGG; nmr:Nmar_0825; -. DR eggNOG; arCOG01915; Archaea. DR eggNOG; COG0330; LUCA. DR HOGENOM; HOG000287552; -. DR OMA; WEDKIIN; -. DR BioCyc; NMAR436308:GI3J-852-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR001107; Band_7. DR InterPro; IPR000163; Prohibitin. DR PANTHER; PTHR23222; PTHR23222; 1. DR Pfam; PF01145; Band_7; 1. DR PRINTS; PR00679; PROHIBITIN. DR SMART; SM00244; PHB; 1. DR SUPFAM; SSF117892; SSF117892; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 35 198 PHB. {ECO:0000259|SMART:SM00244}. FT COILED 190 222 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 287 AA; 31888 MW; 7ACAF54AFFD4A5BA CRC64; MSKYRSPPMS VNMNAAKGVA IGIIILIIIG VVAFASVKIV DAGHRGVLLH WNAVDLTQPP LEEGLHFVIP FQDEVVDIEV RTLKYEKNTR SASKDLQTVE TTVTVNYHPD KEAVHRLYKN LGLDYENRVI QPAIEETVKQ VTANYNAEEL ITKRPLVKQD IESSIRERLN QFEVVTEVIS ITDFEFSPLF AQAIESKVEA EQKALKAEND LLRIEVEAKQ REANAIGIAN ANIAEAKGEA EAIAIINKAL AENPNYLEWL KTQAWDGKLP LVVGEGGTPF IQIPVTP // ID A9A2B0_NITMS Unreviewed; 291 AA. AC A9A2B0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 54. DE SubName: Full=Putative agmatinase {ECO:0000313|EMBL:ABX12821.1}; GN OrderedLocusNames=Nmar_0925 {ECO:0000313|EMBL:ABX12821.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12821.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12821.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12821.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the arginase family. CC {ECO:0000256|RuleBase:RU003684}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12821.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2B0; -. DR STRING; 436308.Nmar_0925; -. DR EnsemblBacteria; ABX12821; ABX12821; Nmar_0925. DR KEGG; nmr:Nmar_0925; -. DR eggNOG; arCOG01700; Archaea. DR eggNOG; COG0010; LUCA. DR HOGENOM; HOG000204321; -. DR KO; K01480; -. DR OMA; VFDAHYD; -. DR BioCyc; NMAR436308:GI3J-953-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016813; F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.40.800.10; -; 1. DR InterPro; IPR005925; Agmatinase-rel. DR InterPro; IPR006035; Ureohydrolase. DR InterPro; IPR023696; Ureohydrolase_domain. DR InterPro; IPR020855; Ureohydrolase_Mn_BS. DR PANTHER; PTHR11358; PTHR11358; 1. DR Pfam; PF00491; Arginase; 1. DR PIRSF; PIRSF036979; Arginase; 1. DR TIGRFAMs; TIGR01230; agmatinase; 1. DR PROSITE; PS01053; ARGINASE_1; 1. DR PROSITE; PS51409; ARGINASE_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|RuleBase:RU003684}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 291 AA; 32513 MW; C22420834EEEE807 CRC64; MSFLDLYMNK NPMITASDDD SEPVATVFGI PFDATHSYKP GCRFGPDAIR DSFNNIEIFH PELSIDLETV HIEDLGNTRH TVVASEMIDM VKKITTELVA KQRQLFILGG EHSITYGTYT SFPKDTGYVV FDAHYDLRDE FADIKLSHAS YLRRVVEERG AENILHVGAR AFVKEELEFL TEHKIKTISD KEIRDGKGPQ LLKDHVSTFD TMYSSFDLDV LDPAFAPGVG NPEAVGITSR ELFDMIYSLQ ETKVIGADIV ELNPYHDNGA TASLAAKIMS TLIAINLSQN Q // ID A9A3Q1_NITMS Unreviewed; 139 AA. AC A9A3Q1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=NUDIX hydrolase {ECO:0000313|EMBL:ABX13313.1}; GN OrderedLocusNames=Nmar_1417 {ECO:0000313|EMBL:ABX13313.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13313.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13313.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13313.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13313.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Q1; -. DR STRING; 436308.Nmar_1417; -. DR EnsemblBacteria; ABX13313; ABX13313; Nmar_1417. DR KEGG; nmr:Nmar_1417; -. DR eggNOG; arCOG01078; Archaea. DR eggNOG; COG0494; LUCA. DR HOGENOM; HOG000261976; -. DR OMA; DYSYVFE; -. DR BioCyc; NMAR436308:GI3J-1452-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.79.10; -; 1. DR InterPro; IPR020084; NUDIX_hydrolase_CS. DR InterPro; IPR000086; NUDIX_hydrolase_dom. DR InterPro; IPR015797; NUDIX_hydrolase_dom-like. DR Pfam; PF00293; NUDIX; 1. DR SUPFAM; SSF55811; SSF55811; 1. DR PROSITE; PS51462; NUDIX; 1. DR PROSITE; PS00893; NUDIX_BOX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13313.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 134 Nudix hydrolase. FT {ECO:0000259|PROSITE:PS51462}. SQ SEQUENCE 139 AA; 16293 MW; D068E1F866A2EEF0 CRC64; MIEETSAGIV LFRKEDSKNL FLLLHYPSGH WDFVKGKMEK GESTHETAVR ETKEETGITD VNFVEGFEEW IEYNFQYQKE LVHKKVVFFL AETTTKEVNI SHEHLDYTWM DYNTAMEKTT FDNAKTVLTK AQMLLSKTV // ID A9A4Q1_NITMS Unreviewed; 341 AA. AC A9A4Q1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Kelch repeat protein {ECO:0000313|EMBL:ABX13029.1}; GN OrderedLocusNames=Nmar_1133 {ECO:0000313|EMBL:ABX13029.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13029.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13029.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13029.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13029.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Q1; -. DR STRING; 436308.Nmar_1133; -. DR EnsemblBacteria; ABX13029; ABX13029; Nmar_1133. DR KEGG; nmr:Nmar_1133; -. DR eggNOG; arCOG05978; Archaea. DR eggNOG; ENOG4112C7M; LUCA. DR HOGENOM; HOG000023847; -. DR OMA; ESWVYDP; -. DR BioCyc; NMAR436308:GI3J-1165-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.120.10.80; -; 1. DR InterPro; IPR015915; Kelch-typ_b-propeller. DR InterPro; IPR006652; Kelch_1. DR InterPro; IPR027560; PEFG-CTERM. DR Pfam; PF01344; Kelch_1; 4. DR SMART; SM00612; Kelch; 5. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 312 331 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 341 AA; 37241 MW; 120CC3C807E27D29 CRC64; MKKISFFLIL LIFPVSDIFA EEDSEGWKRL ADMPEVRSEM ESAAIDEKIY VVGGIANTNQ VSNSVFVFDT KDESWSTGTP MPIELHHAGT AAHDGKLYVV GGYMKGWSPS NALLIYDSVK DSWSQGKDMP TARGALTAEF VDGKLYAVGG FNENSRTENE VYDPADDSWE KMAPMPTARE HLASAVLDGQ LFVIGGRAGQ VNSDANEMYD YTSDTWKILE PLPTARSGLA ASVISGAVFV FGGESSLRTF EENEAYIPEE GWFAQQPMPI PRHGLASSTV GDNIYLIGGG VVPGFSFSGI TEKYHNTVVP EFGVLSIVIL GISTVMIILF TKPKFQHIIQ Q // ID A9A3S0_NITMS Unreviewed; 596 AA. AC A9A3S0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13332.1}; GN OrderedLocusNames=Nmar_1436 {ECO:0000313|EMBL:ABX13332.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13332.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13332.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13332.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13332.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1436; -. DR EnsemblBacteria; ABX13332; ABX13332; Nmar_1436. DR KEGG; nmr:Nmar_1436; -. DR eggNOG; arCOG03383; Archaea. DR eggNOG; COG0823; LUCA. DR BioCyc; NMAR436308:GI3J-1471-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.120.10.30; -; 2. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. DR InterPro; IPR011659; PD40. DR InterPro; IPR027560; PEFG-CTERM. DR Pfam; PF07676; PD40; 1. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 571 589 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 596 AA; 68424 MW; E47C676CD355B740 CRC64; MKTRFLIIIT VFTLVLIPIT TESFAEELWL DADFDIFNEQ LQDDRKFRMG ETVHVVGTSS FYNEETDEHF PASDTEFHVM IKNTQNDIIQ ESNYFSDSEG KIAFSFEILN DFSIGEYTIE MIVDKRKHLD LSFFVGHLVG DVVKIDEEFD LWMEDSEIVS SNTAHLNGIL CSDFLKESND NESIYLHPYD EEILEVESVE IRAFYTNPDG EEFMTSSNPE KKSCTNFTAN LSAHVPGEWS VYVKAFWMEN EILYESTSHS ITYLVKESLF QGTVEKIPKP NRMQSMYLLD WSNDGKSILF SYYLQKTEDS ITPYLGILST DDYEITTLNI PTLLETDEKI RAAKFSPDGK YIHFVANEGN LFQYDIETSH VLKLTNFSEW VNFDYYHYYE EDPEKYSIVI SLDRESYYDD PSEQGSILLD IGNGEENSVD NAHELISGDE LHHFDISPDG KKILFHKTIE SSYGWADRVL AYYTPEGNVV EIPNSQVKCG HPSKWTPDGE MIVYGVSSCG RGAPGGTLHI ISTDGSYHEI ILGYNNDRPD TFVISPDGLS LVYLRENNFE IMTFAKAVPE FQTVMMFVLL LSMLPIVLLR KQLMLK // ID A9A2I2_NITMS Unreviewed; 483 AA. AC A9A2I2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13221.1}; GN OrderedLocusNames=Nmar_1325 {ECO:0000313|EMBL:ABX13221.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13221.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13221.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13221.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13221.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2I2; -. DR STRING; 436308.Nmar_1325; -. DR EnsemblBacteria; ABX13221; ABX13221; Nmar_1325. DR KEGG; nmr:Nmar_1325; -. DR eggNOG; ENOG410XW8V; LUCA. DR BioCyc; NMAR436308:GI3J-1359-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR Gene3D; 4.10.1080.10; -; 1. DR InterPro; IPR003367; Thrombospondin_3-like_rpt. DR InterPro; IPR028974; TSP_type-3_rpt. DR Pfam; PF02412; TSP_3; 2. DR SUPFAM; SSF103647; SSF103647; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 483 AA; 53583 MW; 1AD43FFAA42F162A CRC64; MIAVGLSVTV VAINFEEFPE INLVRADADK DRISDTSDNC PTIKNENQTD FDNDAVGNLC DPDDDNDGIL DILDVFDDNP EEWSDFDFDG IGSNIDPDDD NDGILDSRDA VPIPISEELA IKYLEDIQDC TKIDEGSSRL LCYSQFFGKV AQNQENNSDA LELSIALSKI GLIDDCHFVS HEVGHVAFNE NPDVIENLIG MDGTMCRGGY FHGVLAAYFH DVQEDGESFP SDYDSVCNAL IGTSNYQDCI HGLGHGLVHY FDENLDSSLQ MCHDLSFYQN RLCMKGVMMQ YTDNVLTRQG MSGDVLSDLC KESQLSGIDF AECSMSIGTT LAFFTNHNFD EGAKSCNLIE NKQGQNYCLE GLKLEIQDSE KYEEEPLTLD KREKFQPQFV DETSKVIDIQ SPAIISDFQF VPEAGLISFV IDRPQYVVMY VPNEFLTSKM AVTVDGQIPN SISAKGNVLG DDVSMIRFVP DNSGLVMITP LPK // ID A9A180_NITMS Unreviewed; 213 AA. AC A9A180; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12366.1}; GN OrderedLocusNames=Nmar_0470 {ECO:0000313|EMBL:ABX12366.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12366.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12366.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12366.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12366.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12366; ABX12366; Nmar_0470. DR KEGG; nmr:Nmar_0470; -. DR eggNOG; arCOG08734; Archaea. DR eggNOG; ENOG41110B6; LUCA. DR HOGENOM; HOG000108035; -. DR OMA; IQKMAES; -. DR BioCyc; NMAR436308:GI3J-490-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 213 AA; 24433 MW; 9C38401384042F57 CRC64; MAMPTDDSMR IDDESERTTD VNSYQRTCMD FIEDISHDYE AWVDYYKLPE DEDKRRREGI RATISKTNTW IAKVATSIPA IDVVMNDGIQ KMAESTAGKP LQIGVFVNKT PSYTESKPGV IDVNVKASGR EGRKVKLGYH FKDDRFRIES TCGAYMDETN LPLDDFDFMD IHLKIHAENA KQRDVISFTV TIYEMENDVE MEKRGLSTII HIV // ID A9A2M3_NITMS Unreviewed; 288 AA. AC A9A2M3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Methyltransferase type 11 {ECO:0000313|EMBL:ABX13262.1}; GN OrderedLocusNames=Nmar_1366 {ECO:0000313|EMBL:ABX13262.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13262.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13262.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13262.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13262.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2M3; -. DR STRING; 436308.Nmar_1366; -. DR EnsemblBacteria; ABX13262; ABX13262; Nmar_1366. DR KEGG; nmr:Nmar_1366; -. DR eggNOG; arCOG01791; Archaea. DR eggNOG; arCOG04124; Archaea. DR eggNOG; ENOG4110ZK1; LUCA. DR OMA; EGANECA; -. DR BioCyc; NMAR436308:GI3J-1400-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR013216; Methyltransf_11. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF08241; Methyltransf_11; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13262.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13262.1}. FT DOMAIN 131 216 Methyltransf_11. FT {ECO:0000259|Pfam:PF08241}. SQ SEQUENCE 288 AA; 32726 MW; 38980B45CFF0AE10 CRC64; MIQSSLEFLR CMKCGAKLEL DVFESKKEIE EGILQCKKCN LEFPIIQKIP IMWNDFSKYL SSRRILGGKL YKLSTTSKLK SFVKKSLNAK TNDRSDIEEK WARIYQNSET SKFYSTIKQN LDTLPSSKFV LEHGCSIGIV TSHLANSNEL VFGVDRSFSA IQIAKKQFND NLDYFVADSL SPVFGKLQFD LILALNVLEI IEPNVLLKSI SKQITKGYFV ISDPYDFDRG PSSVKNPVDA SSLRTDLKNL GFKISNSTKK PSYIPWTLKL NPRATLNYKV DLIMSQKS // ID A9A5A9_NITMS Unreviewed; 322 AA. AC A9A5A9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE SubName: Full=Glyoxylate reductase {ECO:0000313|EMBL:ABX12308.1}; DE EC=1.1.1.26 {ECO:0000313|EMBL:ABX12308.1}; GN OrderedLocusNames=Nmar_0412 {ECO:0000313|EMBL:ABX12308.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12308.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12308.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12308.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the D-isomer specific 2-hydroxyacid CC dehydrogenase family. {ECO:0000256|RuleBase:RU003719}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12308.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5A9; -. DR STRING; 436308.Nmar_0412; -. DR EnsemblBacteria; ABX12308; ABX12308; Nmar_0412. DR KEGG; nmr:Nmar_0412; -. DR eggNOG; arCOG01755; Archaea. DR eggNOG; COG1052; LUCA. DR HOGENOM; HOG000136700; -. DR KO; K00015; -. DR OMA; HACSARN; -. DR BioCyc; NMAR436308:GI3J-430-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0047964; F:glyoxylate reductase activity; IEA:UniProtKB-EC. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 2. DR InterPro; IPR006139; D-isomer_2_OHA_DH_cat_dom. DR InterPro; IPR029753; D-isomer_DH_CS. DR InterPro; IPR029752; D-isomer_DH_CS1. DR InterPro; IPR006140; D-isomer_DH_NAD-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00389; 2-Hacid_dh; 1. DR Pfam; PF02826; 2-Hacid_dh_C; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00065; D_2_HYDROXYACID_DH_1; 1. DR PROSITE; PS00670; D_2_HYDROXYACID_DH_2; 1. DR PROSITE; PS00671; D_2_HYDROXYACID_DH_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000256|RuleBase:RU003720, KW ECO:0000313|EMBL:ABX12308.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 320 2-Hacid_dh. {ECO:0000259|Pfam:PF00389}. FT DOMAIN 110 289 2-Hacid_dh_C. {ECO:0000259|Pfam:PF02826}. SQ SEQUENCE 322 AA; 36461 MW; 8225F6EEE1301F99 CRC64; MRKKVFLTRT LHDFALKELK KKYQIEVHKG KIPVPQSKLR SKIKDVDGLI CFPYDIINKE TIDLAENLKV ISTYSVGFDH IDTKYAKGKK IRVGYTPEVL TDATADLAFS LLLDSLRRVS EGDRIIRDGK WKMIYGAHDY VGVDLQGKTI GILGLGRIGQ TLAKRAKAFD MDIIYHNRNR LSKTKERTLD AKYVSFERLI SQSDVISIHV PHTKETDKMF NMKIFKKMKN TAFLINTSRG KVVNEKDLVT ALKKKIIAGA GLDVFEQEPI SKNHPLTKLQ NVVLAPHIGS STKETRAKMA EITVRNLNLG MNGKKPIYSV GY // ID A9A5V4_NITMS Unreviewed; 806 AA. AC A9A5V4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=SMC domain protein {ECO:0000313|EMBL:ABX13109.1}; GN OrderedLocusNames=Nmar_1213 {ECO:0000313|EMBL:ABX13109.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13109.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13109.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13109.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13109.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5V4; -. DR STRING; 436308.Nmar_1213; -. DR EnsemblBacteria; ABX13109; ABX13109; Nmar_1213. DR KEGG; nmr:Nmar_1213; -. DR eggNOG; arCOG00368; Archaea. DR eggNOG; COG0419; LUCA. DR HOGENOM; HOG000023873; -. DR KO; K03546; -. DR OMA; MDEPIPY; -. DR BioCyc; NMAR436308:GI3J-1246-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 4. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 212 291 {ECO:0000256|SAM:Coils}. FT COILED 352 396 {ECO:0000256|SAM:Coils}. FT COILED 518 576 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 806 AA; 95246 MW; 2B86CDCF8E406900 CRC64; MILKSIQLNN IRSYTNEIIE FPLGITLFEG DIGSGKSTIL MAIEFSLFGI GNNKGNSLLK TNEDEGFTKL EFSVEGKKYE ICRKLKRKNK SISQNSGYII ENEKKTTLSA TELKKRIIQI LKFNESSESR AHSRIFRYAV YTPQEEMKMI LSDSEKRLET IRKAFEMDAY KNAILNSDLI ANILDKISVS LETTVQNLQK KEKEYFETQK AIANAHRDQN ELSMEIKNLE KRKEFVEENL NQLKNKEKDL IKFYEEQKHI IEKIKKTEKE IKEKNDEIIK YEKKIALNKN NISKLKSIKK PTTMSIKQID TKIEKYRRDE DLLTNIKIKI EKMNSRLDTL SKILGKNEKN TPKKLEQSIK NLEESIEIEK NQLKNMEKNK NELLKIETQL EVQTEEIEKR LKKISKLDFK CPTCEQIIEE KYVKKIQNEN KNQLLKNKKM IEEIISKNKF NEDSILELQS KISKIEELLK KSVSQRPYLV EYLQIKENHN EEIILKKKLE RKIQQENKSE FNDPIKYYLE LNNKLQNYEK AKEDIKKITE ESREFRIKIL TLEKNLRNSN KKLEIDTRRQ DELNKEILSF KNIQNDIKKY SKYVTEVNDK YLLINKKSAS IETRKKFLDD ELQKIKIEIE NSEIAKKKYD RCNNFHEWLK GFFVPIVDIM EAKIMQYLQY DFNNIYQNWY SILVEDPSKE SRIDDDFTPI VEQEGYEMEI HHLSGGEKTS IALAYRLTLN SMLRRETESL KSNLLILDEP TYGFSKSQLS KVKSILTELK SEQIILVSHE KELEGYAQNI FQVTKENGIS KISRLS // ID A9A2M7_NITMS Unreviewed; 442 AA. AC A9A2M7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13266.1}; GN OrderedLocusNames=Nmar_1370 {ECO:0000313|EMBL:ABX13266.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13266.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13266.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13266.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13266.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2M7; -. DR STRING; 436308.Nmar_1370; -. DR EnsemblBacteria; ABX13266; ABX13266; Nmar_1370. DR KEGG; nmr:Nmar_1370; -. DR eggNOG; arCOG10350; Archaea. DR eggNOG; ENOG41122U8; LUCA. DR HOGENOM; HOG000023860; -. DR BioCyc; NMAR436308:GI3J-1404-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 442 AA; 51163 MW; 5875ACB0E4A2A7AF CRC64; MKRALFSVIL IFTIATISLS LLSEQVMAQT MMSPKQQMMM GTNPNQIVCA DGKVLMMKNM GMPACVNPDS YLRLADRGWG NWDLNMMTND PQQMQRVMNS MLSNQQTGKL WYDTMANDPQ HLQTMTDQMK ATMMKNPQMM SPMMNTMMDN PELRQQMMDM MAQHQPMMQA MRGNSTMMDM MMGGTMNHGM MGMMNDPELR QQMMDMMMNN QQMMQDMMNN GMMMNMMNGK MMMGNMMGNM MMNNNMMGNN MMNGNMMGSG MNQGMMGNNM MGGSMMGNNM MGKGMMMGNM MGMNHGMMSN MNNMSAMGTA MSDPELRQQM MYDMMNHPQM MYDMMNNKQM MNMMNMGTMM NSNWTMNNPQ MMNNMMGQMM NDPQVMQNMH DMMLNNPWHM QGMMGNMMSP MMNTMMDDPE LRQQMMDNMM MHPQMMNNMM NNQQFMQTLN SP // ID A9A2Z0_NITMS Unreviewed; 240 AA. AC A9A2Z0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Creatininase {ECO:0000313|EMBL:ABX12118.1}; GN OrderedLocusNames=Nmar_0222 {ECO:0000313|EMBL:ABX12118.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12118.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12118.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12118.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12118.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Z0; -. DR STRING; 436308.Nmar_0222; -. DR EnsemblBacteria; ABX12118; ABX12118; Nmar_0222. DR KEGG; nmr:Nmar_0222; -. DR eggNOG; arCOG04536; Archaea. DR eggNOG; COG1402; LUCA. DR HOGENOM; HOG000111077; -. DR KO; K01470; -. DR OMA; GHACEVE; -. DR BioCyc; NMAR436308:GI3J-227-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.10310; -; 1. DR InterPro; IPR024087; Creatininase-like_dom. DR InterPro; IPR003785; Creatininase/forma_Hydrolase. DR Pfam; PF02633; Creatininase; 1. DR SUPFAM; SSF102215; SSF102215; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 240 AA; 26922 MW; E31936333B829E5C CRC64; MTDIKAQFDP NLRKSIKRKR QVAVIPIGSI EQHGPHLPIS TDTDIVTAVS EKICEKNGYL LLPTLSYGVS FEHAPFFNLS IRKTTLETVL TDICVSLLEN KIKTVFIING HHGNQNSIKN IDVKLKKISK NRLEVFPFSY WHYMGRDFDH AGFVETSLML AVSKNVKMKL AKKGLITEKM TKQEIKKVVK LATKSFPKAT KNGVWGDPTK ASKKDGQEIL AEIVRNLGKK CQTCLTGHSS // ID A9A5Q2_NITMS Unreviewed; 456 AA. AC A9A5Q2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13057.1}; GN OrderedLocusNames=Nmar_1161 {ECO:0000313|EMBL:ABX13057.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13057.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13057.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13057.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13057.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Q2; -. DR EnsemblBacteria; ABX13057; ABX13057; Nmar_1161. DR KEGG; nmr:Nmar_1161; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-1193-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 31 51 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 456 AA; 52168 MW; 658A4575689860A1 CRC64; MKIKDIKKIM YSHDYHEFHE YSYTSTRSTP CLHLTYLVLA FALIIPSFAY AQESGDFPNW YTEFVIMWTE RQIADDEFIL STEYLANQNL ISVPLFDPTS PSAGIPDWIK NTADWWTDGI VSDSEFLSSL EFLVDTNVIK KTSYQSDSLF DNFTIDVEKL ENGEKVTWTS KDSLSHTITS GTPAKHTPLF SSGIIHKGES VSYVLENGVY SFFCMIHPWE TETLTVPVAL ENYQTAESDF PDSKTEETTL EQKQEEHKTL QEKQAKKILA NFGSTSLNIV SVSNSDGQLH LEYMEEFFTR HIDQFNPQIV ENIKLMENDP EKYLDLALAD AGLSREFYSG QISIWGEIFK VKSENLDQQH VRSLEEMQSL DLEDSKKEYY VAEINKAKQT FDDMLESSGL TMIQPLEEKI TKSEHSDSSK GKILESNLSE NDHIGRIIAT ISDFITSLLY GIKSLF // ID A9A402_NITMS Unreviewed; 360 AA. AC A9A402; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12186.1}; GN OrderedLocusNames=Nmar_0290 {ECO:0000313|EMBL:ABX12186.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12186.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12186.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12186.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12186.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0290; -. DR EnsemblBacteria; ABX12186; ABX12186; Nmar_0290. DR KEGG; nmr:Nmar_0290; -. DR eggNOG; arCOG02046; Archaea. DR eggNOG; COG3875; LUCA. DR HOGENOM; HOG000109763; -. DR OMA; YVSGMED; -. DR BioCyc; NMAR436308:GI3J-302-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 360 AA; 40058 MW; BB3B1ADAE0169372 CRC64; MPEIWLNYGI TDVVLDIRAE NLEQKIDSDG KILDDSAINE KLSTIDYSKP MELVVLHNSK SIQKIISSMF TLCEQKSKPF PKILTDKKIL NQVKAGLPEG SSINEFDNME NTNSNLVFMG EMEFDGLFGY ETVSTRLIKK FGLESMLSAY AKRQGNLPVP GQYPENLQEA KKFSDNFEIQ GIEIVANSQG IVDFSIGHPS ETMSNTKILE SNSIKDVGQH KTMIISTGKD ASNDNLGKSF SSLWNCSNAI KKDGLAILVA ECKGGLGSDA IQQYIEDRLT LEQLKNPTKY VSGMEDLLFL SETQKNFQIG LVSILPEFYA KKLNMISLPG IKYSMDYILK TQGPRQKVAV VADGARLLLR // ID A9A578_NITMS Unreviewed; 288 AA. AC A9A578; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE RecName: Full=50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; DE AltName: Full=Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; GN Name=rpl10 {ECO:0000256|HAMAP-Rule:MF_00280}; GN Synonyms=rplP0 {ECO:0000256|HAMAP-Rule:MF_00280}; GN OrderedLocusNames=Nmar_0381 {ECO:0000313|EMBL:ABX12277.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12277.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12277.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12277.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Forms part of the ribosomal stalk, playing a central CC role in the interaction of the ribosome with GTP-bound translation CC factors. {ECO:0000256|HAMAP-Rule:MF_00280}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms part of the CC ribosomal stalk which helps the ribosome interact with GTP-bound CC translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 CC complex, where L10 forms an elongated spine to which the L12 CC dimers bind in a sequential fashion. {ECO:0000256|HAMAP- CC Rule:MF_00280}. CC -!- SIMILARITY: Belongs to the ribosomal protein L10P family. CC {ECO:0000256|HAMAP-Rule:MF_00280, ECO:0000256|RuleBase:RU003635}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12277.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0381; -. DR EnsemblBacteria; ABX12277; ABX12277; Nmar_0381. DR KEGG; nmr:Nmar_0381; -. DR eggNOG; arCOG04288; Archaea. DR eggNOG; COG0244; LUCA. DR HOGENOM; HOG000108313; -. DR KO; K02864; -. DR OMA; NVIIPAQ; -. DR BioCyc; NMAR436308:GI3J-397-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0070180; F:large ribosomal subunit rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042254; P:ribosome biogenesis; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00280; Ribosomal_L10_arch; 1. DR InterPro; IPR022909; 50S_L10_arch. DR InterPro; IPR001790; Ribosomal_L10P. DR Pfam; PF00466; Ribosomal_L10; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00280, KW ECO:0000256|RuleBase:RU004210, ECO:0000313|EMBL:ABX12277.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00280, KW ECO:0000256|RuleBase:RU004210, ECO:0000313|EMBL:ABX12277.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00280}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00280}. SQ SEQUENCE 288 AA; 31882 MW; D165C0DBDDB20894 CRC64; MHENRTSYPK RKTQMYQQLQ ELPKKYKVMA IIKMNKVRST QILPLRKTLK DDVEFFSVKD KVAQKALENS DIPGMKDMIG EFKGQVMIMF TNMSPFKLNV LLAKNKIMMM ARGGDIASVD VVVPAKNTGI APGPMLTEFK EAGIPTKIDQ GTIWIAKDST PVLKGEAINE KLAAILGKLD IKPVEAGITL FTALEDGLKY AEEEMIIDVE KVRDEFAQAH QEAISLSIEA AYVTPENIEQ ILAKAAQSAR SVSVESGYMT DETKEQILQK ADAQARAVAG QAKDYTPA // ID A9A192_NITMS Unreviewed; 310 AA. AC A9A192; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 56. DE SubName: Full=Phosphate ABC transporter, inner membrane subunit PstA {ECO:0000313|EMBL:ABX12378.1}; GN OrderedLocusNames=Nmar_0482 {ECO:0000313|EMBL:ABX12378.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12378.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12378.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12378.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Cell membrane CC {ECO:0000256|RuleBase:RU363043}; Multi-pass membrane protein CC {ECO:0000256|RuleBase:RU363043}. CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport CC system permease family. CysTW subfamily. CC {ECO:0000256|RuleBase:RU363043}. CC -!- SIMILARITY: Contains 1 ABC transmembrane type-1 domain. CC {ECO:0000256|RuleBase:RU363043}. CC -!- CAUTION: Lacks conserved residue(s) required for the propagation CC of feature annotation. {ECO:0000256|RuleBase:RU363043}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12378.1; -; Genomic_DNA. DR ProteinModelPortal; A9A192; -. DR STRING; 436308.Nmar_0482; -. DR EnsemblBacteria; ABX12378; ABX12378; Nmar_0482. DR KEGG; nmr:Nmar_0482; -. DR eggNOG; arCOG00168; Archaea. DR eggNOG; COG0581; LUCA. DR HOGENOM; HOG000074142; -. DR KO; K02038; -. DR OMA; GAYLHKK; -. DR BioCyc; NMAR436308:GI3J-502-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005887; C:integral component of plasma membrane; IEA:InterPro. DR GO; GO:0005315; F:inorganic phosphate transmembrane transporter activity; IEA:InterPro. DR GO; GO:0035435; P:phosphate ion transmembrane transport; IEA:InterPro. DR Gene3D; 1.10.3720.10; -; 1. DR InterPro; IPR000515; MetI-like. DR InterPro; IPR005672; Phosphate_PstA. DR Pfam; PF00528; BPD_transp_1; 1. DR SUPFAM; SSF161098; SSF161098; 1. DR TIGRFAMs; TIGR00974; 3a0107s02c; 1. DR PROSITE; PS50928; ABC_TM1; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|RuleBase:RU363043}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU363043}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU363043}; KW Transmembrane helix {ECO:0000256|RuleBase:RU363043}. FT TRANSMEM 31 52 Helical. {ECO:0000256|RuleBase:RU363043}. FT TRANSMEM 81 105 Helical. {ECO:0000256|RuleBase:RU363043}. FT TRANSMEM 125 145 Helical. {ECO:0000256|RuleBase:RU363043}. FT TRANSMEM 264 288 Helical. {ECO:0000256|RuleBase:RU363043}. FT DOMAIN 82 288 ABC transmembrane type-1. FT {ECO:0000259|PROSITE:PS50928}. SQ SEQUENCE 310 AA; 33724 MW; E8EA1D78972BDA68 CRC64; MTTTRERRLE YRALFKQNVE RRLMVDKAVR IVVFACVIIA IVPLGSILLE VFKNGAAAIS YEFLTEVPGA VGTGDGGIGP AIQGTLIIIG LSSLIGVPIG VMSGVFLSEY GDNKLAKNIR FFNDVFMEFP SIVMGIFAFL VIVLILGHFS IWAGAFALSL IMFPIVARTT EESLKMVPMT YREAGTALGL KKWVITTRIV ISAAKNGMIT GILLSVSRIG GETAPLIMTI LGSSQFFSGM DVPMDALPLR IWRLSLLPYD SAQLQGWGAA LVLIIIILGI NLGVRYYFSS KKGKQRIFGQ LIKKGVRGTN // ID A9A379_NITMS Unreviewed; 285 AA. AC A9A379; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12508.1}; GN OrderedLocusNames=Nmar_0612 {ECO:0000313|EMBL:ABX12508.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12508.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12508.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12508.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12508.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0612; -. DR EnsemblBacteria; ABX12508; ABX12508; Nmar_0612. DR KEGG; nmr:Nmar_0612; -. DR BioCyc; NMAR436308:GI3J-636-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 285 AA; 32968 MW; 1DA92D74ADFDB2F1 CRC64; MVKKDSKFAL SMTYGPREDA LLRDIEKISK NQEFDISRNE VLRRGLYAFK NLVDVDERIY LKLLSHTLHL LKENIDLDIL RFAKDIASQI LTILIIKHGL AKADSFETIL DSLETIYGIL STQKLDKTYD EKIKKELSDL ATSLDTVFLN SEKDSQKLSN IMHFLQLSSK HNSDSRQHSK TKFDMSEDTL RIFLKHYEDK SESMRLSGKF LKGKVVWFDD KKKIGLLKSH PKHDFLISPI SSLNSLYRNN FELFSGRDFL SSKSKLGLGY VPQNFEDDMI ESDNS // ID A9A5K7_NITMS Unreviewed; 426 AA. AC A9A5K7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 45. DE SubName: Full=Aminotransferase class-III {ECO:0000313|EMBL:ABX12718.1}; GN OrderedLocusNames=Nmar_0822 {ECO:0000313|EMBL:ABX12718.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12718.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12718.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12718.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU003560}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12718.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5K7; -. DR STRING; 436308.Nmar_0822; -. DR EnsemblBacteria; ABX12718; ABX12718; Nmar_0822. DR KEGG; nmr:Nmar_0822; -. DR eggNOG; arCOG00917; Archaea. DR eggNOG; COG0161; LUCA. DR HOGENOM; HOG000020209; -. DR KO; K00833; -. DR OMA; MAFEYCK; -. DR BioCyc; NMAR436308:GI3J-849-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004015; F:adenosylmethionine-8-amino-7-oxononanoate transaminase activity; IEA:InterPro. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0009102; P:biotin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR005815; BioA. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR PIRSF; PIRSF000521; Transaminase_4ab_Lys_Orn; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR00508; bioA; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX12718.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU003560}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12718.1}. SQ SEQUENCE 426 AA; 48231 MW; 993642B50CB65088 CRC64; MKEWNSFDKI TKAKGMWLVD SKGHKMIDAV ASMWCNVWGH SNPQLVRTIT NQSKKLQHSS MFNITNEPAE QLADSLIKMS PGMHKVFYSD NGSSAMEIAI KIALQYWKNI GEKKTEIATV ENGYHGDTFG AMAVGYVPQF FGKFKKQLFQ TLQFPVPNNY RLPKGYTLSD YQNECLEKIE KKFSKNNNIA AFVMESGAQV AGGVIIYPKG FQRKISQLCK KYDVLFVLDE IATGFGRLGS MTQYQEQKSI PDIVAYGKML TGGYLTMAAT LANKKVYDSF SGEFNDWKHL FHGHTYTGNP LAASVANENI DMYKKNNLIK KVQKTSKVFE KYYDEISEID IVGDIRHKGM LMGIELVTDR KKKTPIHPKK SINKIFYEIG KKNGIYLRTL GNIVMLVPPL AISEKELNSL LTRTIKTIQD AKSQVI // ID A9A3S7_NITMS Unreviewed; 152 AA. AC A9A3S7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13339.1}; GN OrderedLocusNames=Nmar_1443 {ECO:0000313|EMBL:ABX13339.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13339.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13339.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13339.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13339.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3S7; -. DR STRING; 436308.Nmar_1443; -. DR EnsemblBacteria; ABX13339; ABX13339; Nmar_1443. DR KEGG; nmr:Nmar_1443; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-1479-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR002386; Amicyanin/Pseudoazurin. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR PRINTS; PR00155; AMICYANIN. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 72 152 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 152 AA; 16538 MW; 1D3FA4E9727014AE CRC64; MIKKIAAASI VGIVIIVSLA VAFSTEMEPQ PEPQPESNAV SSHSMQGVIQ PDVMTGGDVI MPTKVSRPGC EETDRCYIPS VITISAGESV TWVNEDSAFH SVTSGFYDAP QDLFDSGHMD PFDSYTLTFD EPGTIDYYCT LHPWMEGQVI VE // ID A9A1D1_NITMS Unreviewed; 88 AA. AC A9A1D1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12766.1}; GN OrderedLocusNames=Nmar_0870 {ECO:0000313|EMBL:ABX12766.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12766.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12766.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12766.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12766.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1D1; -. DR STRING; 436308.Nmar_0870; -. DR EnsemblBacteria; ABX12766; ABX12766; Nmar_0870. DR KEGG; nmr:Nmar_0870; -. DR eggNOG; arCOG02726; Archaea. DR eggNOG; COG0721; LUCA. DR HOGENOM; HOG000017523; -. DR KO; K02435; -. DR OMA; MEILDEA; -. DR BioCyc; NMAR436308:GI3J-898-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006450; P:regulation of translational fidelity; IEA:InterPro. DR InterPro; IPR003837; Asp/Glu-ADT_csu. DR SUPFAM; SSF141000; SSF141000; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 88 AA; 10324 MW; 0E68C4FD8BA83CF4 CRC64; MVTEEEIEKV AKLMKIEVDD HKEYVDKVHA MIDYFDILDS AGVEDEEISM QEIPITALRE DKHIPFDEKL IEKLNHYKGT YVRAPKMS // ID A9A1W0_NITMS Unreviewed; 315 AA. AC A9A1W0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX12081.1}; GN OrderedLocusNames=Nmar_0185 {ECO:0000313|EMBL:ABX12081.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12081.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12081.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12081.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12081.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1W0; -. DR STRING; 436308.Nmar_0185; -. DR EnsemblBacteria; ABX12081; ABX12081; Nmar_0185. DR KEGG; nmr:Nmar_0185; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; arCOG03700; Archaea. DR eggNOG; ENOG410ZSV1; LUCA. DR BioCyc; NMAR436308:GI3J-187-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 2. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR028871; BlueCu_1_BS. DR InterPro; IPR033138; Cu_oxidase_CS. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 2. DR PROSITE; PS00196; COPPER_BLUE; 1. DR PROSITE; PS00079; MULTICOPPER_OXIDASE1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 39 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 239 315 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 315 AA; 33051 MW; C685566A5F273C3E CRC64; MTENQYYLTT PARTGKMMAI MLGICIVGGA IFFSLWDYWI SEPAPVVAMM GGDSTPTAVA VHTGATITSD LSFIESSDFI TLAFNALPGE PGNNPTINME VGDKVIFNVV NDGVSFHSFG VTADTEGFGG IFPGSEVASP ANPLKSGEGG TSEFIAGEEG VFYYICTVPG HREQGMVGKI IVGDAEVPEE VVEAVPEPMA TEPAEEKAPV STEPVAYDGP ISLPEGSGVP GCQETNECYI PYHVTAPAGT EIVWSNDDTA AHTVTSGSPA DGPDGIFDSS ILAGGLTFSV TLDEPGEYPY YCIVHPWMVG NITIE // ID A9A326_NITMS Unreviewed; 570 AA. AC A9A326; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Succinate dehydrogenase or fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:ABX12154.1}; DE EC=1.3.99.1 {ECO:0000313|EMBL:ABX12154.1}; GN OrderedLocusNames=Nmar_0258 {ECO:0000313|EMBL:ABX12154.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12154.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12154.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12154.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12154.1; -; Genomic_DNA. DR ProteinModelPortal; A9A326; -. DR STRING; 436308.Nmar_0258; -. DR EnsemblBacteria; ABX12154; ABX12154; Nmar_0258. DR KEGG; nmr:Nmar_0258; -. DR eggNOG; arCOG00571; Archaea. DR eggNOG; COG1053; LUCA. DR HOGENOM; HOG000160475; -. DR KO; K00239; -. DR OMA; AAPSIIH; -. DR BioCyc; NMAR436308:GI3J-266-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0000104; F:succinate dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0022900; P:electron transport chain; IEA:InterPro. DR Gene3D; 1.20.58.100; -; 1. DR Gene3D; 3.50.50.60; -; 2. DR Gene3D; 3.90.700.10; -; 1. DR InterPro; IPR003953; FAD-binding_2. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR003952; FRD_SDH_FAD_BS. DR InterPro; IPR015939; Fum_Rdtase/Succ_DH_flav-like_C. DR InterPro; IPR030664; SdhA/FrdA/AprA. DR InterPro; IPR027477; Succ_DH/fumarate_Rdtase_cat. DR InterPro; IPR014006; Succ_Dhase_FrdA_Gneg. DR Pfam; PF00890; FAD_binding_2; 1. DR Pfam; PF02910; Succ_DH_flav_C; 1. DR PIRSF; PIRSF000171; SDHA_APRA_LASPO; 1. DR SUPFAM; SSF46977; SSF46977; 1. DR SUPFAM; SSF51905; SSF51905; 2. DR SUPFAM; SSF56425; SSF56425; 1. DR TIGRFAMs; TIGR01812; sdhA_frdA_Gneg; 1. DR PROSITE; PS00504; FRD_SDH_FAD_BINDING; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12154.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 389 FAD_binding_2. FT {ECO:0000259|Pfam:PF00890}. FT DOMAIN 446 570 Succ_DH_flav_C. FT {ECO:0000259|Pfam:PF02910}. SQ SEQUENCE 570 AA; 63338 MW; CECA734C72032B22 CRC64; MVDSIEFDLI ICGSGLAGLR AAIAAAKKGP NLKIGIVSKL QVMRSHSVSA EGGTAAVIQE DAGDTIESHV YDTVKGSDFL ADQDVAERLC VEMPQEIHQL DHWGMPWSRK DDGRIDQRNF GGYSFPRATY ASDKVGFFEM QTLYDTCQKH ENIEYLNEWF ATSIVHDGKK FMGLTAIELG SGTFYTIKGK ALIIATGGAG RLYSFSTYAL SSTPDGLDMG LRAGMALKDM EFVQFHPTGI LPSGILITEG ARGEGGYLLN NKGERFMKTY AAGKMELAPR DIVSRSIMTE IQEGRGFKHE TGVDCMKLDL RHLGDEKIKE KLGGIREISI KFSGIDPAEE LLDIRPVCHY MMGGLHTDID GATEIQGVWA AGEAACNSVH GSNRLGANST SECIVWGKIT GELAAEYAMK NTTADQWPHH LVAAEEKRIY DGIFRGNGDA NPYEIRQELT DVMNDKAYVY RNETDLVAGL KRIRELKAQT WKHVDDKAKE YNTNFSNVME LDSMFRVAEI VLIGAINRKE SRGAHARTDY TKRDDANFLH HTLAYYDPNE PIMKTHPVTI TKYQPVERKY // ID A9A1V4_NITMS Unreviewed; 77 AA. AC A9A1V4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12075.1}; GN OrderedLocusNames=Nmar_0179 {ECO:0000313|EMBL:ABX12075.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12075.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12075.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12075.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12075.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0179; -. DR EnsemblBacteria; ABX12075; ABX12075; Nmar_0179. DR KEGG; nmr:Nmar_0179; -. DR eggNOG; arCOG08823; Archaea. DR eggNOG; ENOG411117K; LUCA. DR HOGENOM; HOG000110842; -. DR OMA; SHEYYRR; -. DR BioCyc; NMAR436308:GI3J-181-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 34 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 70 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 77 AA; 8974 MW; 17A637EA6E2DA9AE CRC64; MSHEYYRRGR NWYTAIGVLF SVMAGIVLIR QLLIWGPEFV GDFLFNGEIT NEKVSMAMLA FGIFMIALGF RKHEQKR // ID A9A2D0_NITMS Unreviewed; 81 AA. AC A9A2D0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12841.1}; GN OrderedLocusNames=Nmar_0945 {ECO:0000313|EMBL:ABX12841.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12841.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12841.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12841.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12841.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12841; ABX12841; Nmar_0945. DR KEGG; nmr:Nmar_0945; -. DR BioCyc; NMAR436308:GI3J-973-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 81 AA; 9509 MW; F9DB79A72CEB3C03 CRC64; MSEKNPNEEY FQSLLESLNK DPNWRTVEEQ LEKYELIKKD LTPEQQAIIS EMGRAMLALA DSQPKIIIDK FLELVKNLDK K // ID A9A395_NITMS Unreviewed; 99 AA. AC A9A395; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12524.1}; GN OrderedLocusNames=Nmar_0628 {ECO:0000313|EMBL:ABX12524.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12524.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12524.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12524.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12524.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0628; -. DR EnsemblBacteria; ABX12524; ABX12524; Nmar_0628. DR KEGG; nmr:Nmar_0628; -. DR BioCyc; NMAR436308:GI3J-652-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 99 AA; 11836 MW; 324A7047587BF63F CRC64; MGFLSNFRKE LQSAKAKKAA QINGKTLKGL LKTFKEERDQ VEKETGTRPE IDDTTRMYMQ KVLNVWISEG KNIDEEKFWR EVDYNRQFTH PVEYYEIKN // ID A9A3X5_NITMS Unreviewed; 134 AA. AC A9A3X5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 42. DE RecName: Full=UPF0201 protein Nmar_1779 {ECO:0000256|HAMAP-Rule:MF_01112}; GN OrderedLocusNames=Nmar_1779 {ECO:0000313|EMBL:ABX13675.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13675.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13675.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13675.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the UPF0201 family. {ECO:0000256|HAMAP- CC Rule:MF_01112}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13675.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X5; -. DR STRING; 436308.Nmar_1779; -. DR EnsemblBacteria; ABX13675; ABX13675; Nmar_1779. DR KEGG; nmr:Nmar_1779; -. DR eggNOG; arCOG01043; Archaea. DR eggNOG; COG1931; LUCA. DR HOGENOM; HOG000224697; -. DR KO; K09736; -. DR OMA; TWFYLNK; -. DR BioCyc; NMAR436308:GI3J-1826-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.1440.10; -; 1. DR HAMAP; MF_01112; UPF0201; 1. DR InterPro; IPR022803; Ribosomal_L5_domain. DR InterPro; IPR002739; UPF0201. DR Pfam; PF01877; RNA_binding; 1. DR SUPFAM; SSF55282; SSF55282; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 134 AA; 15466 MW; 120702AB3057BF88 CRC64; MKIPNINCKI EMFCAVNPSE DPEKTQKSIS NIFPYSTIKT ENYSISAESK DLTSLEKIYE VIHSKQSQKT YKRNLQKNLK NDSTWFYLNK QAAFVEKIAI CEESEESPLG PIKVILTSSK IDEIIDWFVY GDEN // ID A9A5F6_NITMS Unreviewed; 185 AA. AC A9A5F6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 52. DE RecName: Full=Flavin prenyltransferase UbiX {ECO:0000256|HAMAP-Rule:MF_01984}; DE EC=2.5.1.129 {ECO:0000256|HAMAP-Rule:MF_01984}; GN Name=ubiX {ECO:0000256|HAMAP-Rule:MF_01984}; GN OrderedLocusNames=Nmar_0771 {ECO:0000313|EMBL:ABX12667.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12667.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12667.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12667.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Flavin prenyltransferase that catalyzes the synthesis of CC the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- CC polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase CC is metal-independent and links a dimethylallyl moiety from CC dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms CC of FMN. {ECO:0000256|HAMAP-Rule:MF_01984}. CC -!- CATALYTIC ACTIVITY: Dimethylallyl phosphate + FMNH(2) = prenylated CC FMNH(2) + phosphate. {ECO:0000256|HAMAP-Rule:MF_01984}. CC -!- SIMILARITY: Belongs to the UbiX/PAD1 family. {ECO:0000256|HAMAP- CC Rule:MF_01984}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12667.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5F6; -. DR SMR; A9A5F6; 1-184. DR STRING; 436308.Nmar_0771; -. DR EnsemblBacteria; ABX12667; ABX12667; Nmar_0771. DR KEGG; nmr:Nmar_0771; -. DR eggNOG; arCOG01703; Archaea. DR eggNOG; COG0163; LUCA. DR HOGENOM; HOG000225437; -. DR KO; K03186; -. DR OMA; IIMPREM; -. DR BioCyc; NMAR436308:GI3J-797-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR GO; GO:0004659; F:prenyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0051188; P:cofactor biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1950; -; 1. DR HAMAP; MF_01984; ubiX_pad; 1. DR InterPro; IPR003382; Flavoprotein. DR InterPro; IPR004507; UbiX_Pad1. DR Pfam; PF02441; Flavoprotein; 1. DR SUPFAM; SSF52507; SSF52507; 1. DR TIGRFAMs; TIGR00421; ubiX_pad; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Flavoprotein {ECO:0000256|HAMAP-Rule:MF_01984}; KW FMN {ECO:0000256|HAMAP-Rule:MF_01984}; KW Lyase {ECO:0000313|EMBL:ABX12667.1}; KW Prenyltransferase {ECO:0000256|HAMAP-Rule:MF_01984}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01984}. FT DOMAIN 1 127 Flavoprotein. {ECO:0000259|Pfam:PF02441}. FT NP_BIND 9 11 FMN. {ECO:0000256|HAMAP-Rule:MF_01984}. FT NP_BIND 86 89 FMN. {ECO:0000256|HAMAP-Rule:MF_01984}. FT BINDING 35 35 FMN. {ECO:0000256|HAMAP-Rule:MF_01984}. FT BINDING 121 121 FMN. {ECO:0000256|HAMAP-Rule:MF_01984}. FT BINDING 151 151 DMAP. {ECO:0000256|HAMAP-Rule:MF_01984}. FT BINDING 167 167 DMAP. {ECO:0000256|HAMAP-Rule:MF_01984}. SQ SEQUENCE 185 AA; 20366 MW; 43688123F4DB54B6 CRC64; MKLIIGITGS TGVIYGIRML ETLKKLNIDT HLIMSEWGAK CIPMETEFTV DYVKSLATEV SDEKNMAASI SSGTHRIDGM IVAPCSMKTL AAIANGYDDT LVARAAGVTI KESRKLILMV RETPLSAIHL ENMLKLSRLG IVILPPVTEF YTKPKSIDDI VNHGVGKCLD QFDIEHNLYP RWGSS // ID A9A399_NITMS Unreviewed; 69 AA. AC A9A399; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12528.1}; GN OrderedLocusNames=Nmar_0632 {ECO:0000313|EMBL:ABX12528.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12528.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12528.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12528.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12528.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0632; -. DR EnsemblBacteria; ABX12528; ABX12528; Nmar_0632. DR KEGG; nmr:Nmar_0632; -. DR eggNOG; arCOG08753; Archaea. DR eggNOG; ENOG4110ZNJ; LUCA. DR HOGENOM; HOG000108557; -. DR OMA; LFHENET; -. DR BioCyc; NMAR436308:GI3J-657-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 69 AA; 8047 MW; 9104014EA4405A43 CRC64; MPEWTCPECG KRLFHENETT LEVEKTIHSK FCRKEGGSTH SYMHRDLAHM NSFDPEREND SNGVPVLKK // ID A9A3S3_NITMS Unreviewed; 136 AA. AC A9A3S3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABX13335.1}; GN OrderedLocusNames=Nmar_1439 {ECO:0000313|EMBL:ABX13335.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13335.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13335.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13335.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13335.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3S3; -. DR STRING; 436308.Nmar_1439; -. DR EnsemblBacteria; ABX13335; ABX13335; Nmar_1439. DR KEGG; nmr:Nmar_1439; -. DR eggNOG; arCOG02706; Archaea. DR eggNOG; COG0346; LUCA. DR HOGENOM; HOG000232015; -. DR BioCyc; NMAR436308:GI3J-1474-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051213; F:dioxygenase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.180.10; -; 1. DR InterPro; IPR029068; Glyas_Bleomycin-R_OHBP_Dase. DR InterPro; IPR004360; Glyas_Fos-R_dOase_dom. DR Pfam; PF00903; Glyoxalase; 1. DR SUPFAM; SSF54593; SSF54593; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Dioxygenase {ECO:0000313|EMBL:ABX13335.1}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13335.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 127 Glyoxalase. {ECO:0000259|Pfam:PF00903}. SQ SEQUENCE 136 AA; 15366 MW; 1852D33276EC781E CRC64; MMIDEIEGMT VMVSDQQKAL DFYTEKLGFE SKLDTDVAGF RWIVVGPPNS KTVLSLADPV NVEKWSEKKS TKLDLKIGTP TGIWFFTKNI DETYHELQSK GVEITKPEKQ VWGGIMCTVY DQDKNSFGLV GDSEQH // ID A9A143_NITMS Unreviewed; 110 AA. AC A9A143; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12004.1}; GN OrderedLocusNames=Nmar_0104 {ECO:0000313|EMBL:ABX12004.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12004.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12004.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12004.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12004.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12004; ABX12004; Nmar_0104. DR KEGG; nmr:Nmar_0104; -. DR eggNOG; arCOG10515; Archaea. DR eggNOG; ENOG41111RH; LUCA. DR OMA; EPARTIM; -. DR BioCyc; NMAR436308:GI3J-107-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 110 AA; 13123 MW; 964E4BB24029E56C CRC64; MEGIISFGNK RNYEDFKKQI PIQVLPLFDS IREFCFNLGE NVIEDVRMHR VVFCKSMTFR WFTDVEPQKE GVIIKLQKSR KEPVEIIQID KDQKISEFGD VIKRAYEQIH // ID A9A232_NITMS Unreviewed; 284 AA. AC A9A232; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE RecName: Full=Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00370}; DE Short=SK {ECO:0000256|HAMAP-Rule:MF_00370}; DE EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00370}; GN Name=aroK {ECO:0000256|HAMAP-Rule:MF_00370}; GN OrderedLocusNames=Nmar_0549 {ECO:0000313|EMBL:ABX12445.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12445.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12445.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12445.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + shikimate = ADP + shikimate 3-phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00370}. CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 5/7. {ECO:0000256|HAMAP-Rule:MF_00370}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00370}. CC -!- SIMILARITY: Belongs to the GHMP kinase family. Archaeal shikimate CC kinase subfamily. {ECO:0000256|HAMAP-Rule:MF_00370}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12445.1; -; Genomic_DNA. DR ProteinModelPortal; A9A232; -. DR STRING; 436308.Nmar_0549; -. DR EnsemblBacteria; ABX12445; ABX12445; Nmar_0549. DR KEGG; nmr:Nmar_0549; -. DR eggNOG; arCOG01025; Archaea. DR eggNOG; COG1685; LUCA. DR HOGENOM; HOG000105526; -. DR KO; K00891; -. DR OMA; DATASYY; -. DR BioCyc; NMAR436308:GI3J-571-MONOMER; -. DR UniPathway; UPA00053; UER00088. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004765; F:shikimate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.30.230.10; -; 1. DR HAMAP; MF_00370; Shik_kinase_arch; 1. DR InterPro; IPR013750; GHMP_kinase_C_dom. DR InterPro; IPR006204; GHMP_kinase_N_dom. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR InterPro; IPR010189; SK_arc. DR Pfam; PF08544; GHMP_kinases_C; 1. DR Pfam; PF00288; GHMP_kinases_N; 1. DR PIRSF; PIRSF005758; Shikimt_kin_arch; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55060; SSF55060; 1. DR TIGRFAMs; TIGR01920; Shik_kin_archae; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00370}; KW Aromatic amino acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00370}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00370, KW ECO:0000256|RuleBase:RU003563}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00370}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00370, KW ECO:0000256|RuleBase:RU003563, ECO:0000313|EMBL:ABX12445.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00370, KW ECO:0000256|RuleBase:RU003563}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00370, KW ECO:0000256|RuleBase:RU003563, ECO:0000313|EMBL:ABX12445.1}. FT DOMAIN 78 146 GHMP_kinases_N. FT {ECO:0000259|Pfam:PF00288}. FT DOMAIN 224 263 GHMP_kinases_C. FT {ECO:0000259|Pfam:PF08544}. FT NP_BIND 85 95 ATP. {ECO:0000256|HAMAP-Rule:MF_00370}. SQ SEQUENCE 284 AA; 30125 MW; 45974EFEDA9E6373 CRC64; MAKAKATVHG AVSIVNAIAN QKGATLGIDL KVEAIVETTP GKGIVIQSEN KTLSSRLINK TVEKIVSKKD LEKNKITITL DSEIPTGYGL KSSSAISSAV ALGCAKIFKS KFTDQQILLA GVDASIESKV SITGAYDDAC SCYYGGFNVT DNAKKKRMSF EKGPSNLIAV IFIPKNRKRG NLKKLKVLSS VFDHAWDLAK KANYWEAMII NGLATASILS SNPDVITGLI ERGALGASVS GNGPAIAAIT KKENESNIKK AFSSLEGKII VAKVSNKKAE VHEV // ID A9A613_NITMS Unreviewed; 137 AA. AC A9A613; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13491.1}; GN OrderedLocusNames=Nmar_1595 {ECO:0000313|EMBL:ABX13491.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13491.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13491.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13491.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13491.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1595; -. DR EnsemblBacteria; ABX13491; ABX13491; Nmar_1595. DR KEGG; nmr:Nmar_1595; -. DR eggNOG; arCOG10594; Archaea. DR eggNOG; ENOG4111036; LUCA. DR BioCyc; NMAR436308:GI3J-1639-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 137 AA; 16255 MW; 1B9E407873E37AA6 CRC64; MSDQEKNNEW DSLWQEYTKS LENWKSLFEQ IQTASTEMQS RFNEVWEKAS IESSNETMKL FGENWQKAMT DAGMNSFKEF SENWQKALND SNMSTFKQFV ENWQKSLSSS GLEQMNAYGE MMKKFTETWG SMWPKSK // ID A9A351_NITMS Unreviewed; 101 AA. AC A9A351; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=NADH-ubiquinone oxidoreductase chain 4L {ECO:0000313|EMBL:ABX12179.1}; GN OrderedLocusNames=Nmar_0283 {ECO:0000313|EMBL:ABX12179.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12179.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12179.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12179.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12179.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0283; -. DR EnsemblBacteria; ABX12179; ABX12179; Nmar_0283. DR KEGG; nmr:Nmar_0283; -. DR eggNOG; arCOG03073; Archaea. DR eggNOG; COG0713; LUCA. DR HOGENOM; HOG000066429; -. DR OMA; GMEGVMF; -. DR BioCyc; NMAR436308:GI3J-293-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016651; F:oxidoreductase activity, acting on NAD(P)H; IEA:InterPro. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR HAMAP; MF_01456; NDH1_NuoK; 1. DR InterPro; IPR001133; NADH_UbQ_OxRdtase_chain4L/K. DR PANTHER; PTHR11434; PTHR11434; 1. DR Pfam; PF00420; Oxidored_q2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:ABX12179.1}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 50 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 88 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 101 AA; 10860 MW; FCA1F7822B5EAADC CRC64; MTNELIDFTL VSVALLGIGI YGLAVKRNFI RMLFAVEIVI NAANLSLVAF GRFLPHSGGQ TLALFSIAIA AAEVAVGLSL IIVAYRMYQN VDIADFRSLK G // ID A9A1G6_NITMS Unreviewed; 284 AA. AC A9A1G6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13145.1}; GN OrderedLocusNames=Nmar_1249 {ECO:0000313|EMBL:ABX13145.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13145.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13145.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13145.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13145.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13145; ABX13145; Nmar_1249. DR KEGG; nmr:Nmar_1249; -. DR eggNOG; arCOG10580; Archaea. DR eggNOG; ENOG41110MQ; LUCA. DR HOGENOM; HOG000023841; -. DR BioCyc; NMAR436308:GI3J-1282-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 284 AA; 33763 MW; 5C0FD11058105BC2 CRC64; MSTEENTTKY GNLYSYKFYL RPTVHRLYGD RFSSIKKIKH HENVQKLLHV LFLHGTCTTW EMAKIKHPND VSTIRTKEKE YRRLIKGRTD RGKHSSGIME LGLVINDGQK FNKGYSDTYR LSLPGILYCL DVLNLSKKEI DQMAAKYAIF MPKLFGKWEF LKSLVDDDVY KIQILARGLL LDNPELSLEK SPLYELMSYL NFKYRKFYEF ISEKDLSEQI SYWFYTCILY QNQRKGKNTL SGVEKLHAIF KKDKEIATWY KEFFKESELY FKDRTKILKN SGIF // ID A9A4R1_NITMS Unreviewed; 272 AA. AC A9A4R1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13365.1}; GN OrderedLocusNames=Nmar_1469 {ECO:0000313|EMBL:ABX13365.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13365.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13365.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13365.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13365.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4R1; -. DR STRING; 436308.Nmar_1469; -. DR EnsemblBacteria; ABX13365; ABX13365; Nmar_1469. DR KEGG; nmr:Nmar_1469; -. DR eggNOG; arCOG02172; Archaea. DR eggNOG; COG0720; LUCA. DR HOGENOM; HOG000107891; -. DR KO; K01737; -. DR OMA; GHTSSVM; -. DR BioCyc; NMAR436308:GI3J-1506-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007115; 6-PTP_synth/QueD. DR Pfam; PF01242; PTPS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 272 AA; 30974 MW; 0DE07C55E11C2A14 CRC64; MTTNPVMLDS DFKYIDKKGN LMKTRTELTV AQMLDFLEDE YQYNHKVTLK SGTEVTVDFK TDKGLIEVID NEEDIAKYKQ IKEDFPDQKV MAIGHGKYAA QLKELQDIVF YDKSPQTGSI FLDDGSFAFD YAHILPLVEK CSILHGHTSS VMVELVGQMK DNLLVDFGEA KRIVKDVLTA FDHKFFINRK YMKSEDDSHY VIKFEGPKGM FELQVPKHTT YLLEGEATVE NLSSELIKLL APKMPSNVEA VGVYIYEGYN KGSHIISNIS KD // ID A9A648_NITMS Unreviewed; 128 AA. AC A9A648; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13526.1}; GN OrderedLocusNames=Nmar_1630 {ECO:0000313|EMBL:ABX13526.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13526.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13526.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13526.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13526.1; -; Genomic_DNA. DR ProteinModelPortal; A9A648; -. DR STRING; 436308.Nmar_1630; -. DR EnsemblBacteria; ABX13526; ABX13526; Nmar_1630. DR KEGG; nmr:Nmar_1630; -. DR eggNOG; arCOG01285; Archaea. DR eggNOG; COG1545; LUCA. DR HOGENOM; HOG000109962; -. DR KO; K07068; -. DR OMA; IATYTII; -. DR BioCyc; NMAR436308:GI3J-1675-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002878; DUF35_OB-fold_C. DR InterPro; IPR022002; DUF35_Znr_N. DR InterPro; IPR012340; NA-bd_OB-fold. DR Pfam; PF12172; DUF35_N; 1. DR Pfam; PF01796; OB_aCoA_assoc; 1. DR SUPFAM; SSF50249; SSF50249; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 51 DUF35_N. {ECO:0000259|Pfam:PF12172}. FT DOMAIN 53 115 OB_aCoA_assoc. FT {ECO:0000259|Pfam:PF01796}. SQ SEQUENCE 128 AA; 14016 MW; 012112EE7D8FCFD4 CRC64; MFSRVCKMSI EEQVIENAKN GKLLTHKCTE CGYLHLSTAY FCRECGSKGF EDVLLDGIGK IATYTIITVP PAGFEKYTPY AFVVLEVDNS DLRISGFMAG IATPADLPVG TPAKITGFDE RGIIIEKQ // ID A9A485_NITMS Unreviewed; 272 AA. AC A9A485; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 58. DE RecName: Full=Putative ribose 1,5-bisphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00304}; DE EC=5.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00304}; DE AltName: Full=Ribulose 1,5-bisphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00304}; GN OrderedLocusNames=Nmar_0678 {ECO:0000313|EMBL:ABX12574.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12574.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12574.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12574.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of ribose 1,5-bisphosphate to CC ribulose 1,5-bisphosphate (RuBP), the CO(2) acceptor and substrate CC for RubisCO. {ECO:0000256|HAMAP-Rule:MF_00304}. CC -!- CATALYTIC ACTIVITY: Alpha-D-ribose 1,5-bisphosphate = D-ribulose CC 1,5-bisphosphate. {ECO:0000256|HAMAP-Rule:MF_00304}. CC -!- COFACTOR: CC Name=NAD(+); Xref=ChEBI:CHEBI:57540; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00304}; CC -!- SUBUNIT: Homohexamer. {ECO:0000256|HAMAP-Rule:MF_00304}. CC -!- SIMILARITY: Belongs to the THI4 family. {ECO:0000256|HAMAP- CC Rule:MF_00304}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12574.1; -; Genomic_DNA. DR ProteinModelPortal; A9A485; -. DR STRING; 436308.Nmar_0678; -. DR EnsemblBacteria; ABX12574; ABX12574; Nmar_0678. DR KEGG; nmr:Nmar_0678; -. DR eggNOG; arCOG00574; Archaea. DR eggNOG; COG1635; LUCA. DR HOGENOM; HOG000106048; -. DR KO; K03146; -. DR OMA; GIVMNWT; -. DR BioCyc; NMAR436308:GI3J-703-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0043917; F:ribose 1,5-bisphosphate isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW. DR GO; GO:0019693; P:ribose phosphate metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.50.50.60; -; 1. DR HAMAP; MF_00304; Thi4; 1. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR002922; Thi4_fam. DR InterPro; IPR022828; Thi4_putative. DR SUPFAM; SSF51905; SSF51905; 1. DR TIGRFAMs; TIGR00292; TIGR00292; 1. PE 3: Inferred from homology; KW Carbohydrate metabolism {ECO:0000256|HAMAP-Rule:MF_00304}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000256|HAMAP-Rule:MF_00304}; KW NAD {ECO:0000256|HAMAP-Rule:MF_00304}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT NP_BIND 37 65 NAD. {ECO:0000256|HAMAP-Rule:MF_00304}. SQ SEQUENCE 272 AA; 29506 MW; 5B789814D7D13835 CRC64; MQEATVAEQS SKIFTDVREV EITQAIANEF HKVLVDRAES DVIIIGAGPA GLTASRELSN LGFKVLVIEQ NNYLGGGYWL GGYMMNPVTV REPAQKIWDE LGVPYQKVQD GLYLTPGPHA VSKLIAGACD AGVKFLQLTK FDDLVLKNGR VAGIVVNWMP VSALPRNITC VDPVAFEAKI IIDASGHDSV AVKRLVDRGL AEWKGMEPMF VNDGEEHVVH KTGEIYPGLI AAGMSVTETH GLARMGPTFG SMLYSGKRAA EIAAEKIKEL ER // ID A9A2G3_NITMS Unreviewed; 116 AA. AC A9A2G3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13202.1}; GN OrderedLocusNames=Nmar_1306 {ECO:0000313|EMBL:ABX13202.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13202.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13202.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13202.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13202.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1306; -. DR EnsemblBacteria; ABX13202; ABX13202; Nmar_1306. DR KEGG; nmr:Nmar_1306; -. DR eggNOG; arCOG03067; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000110207; -. DR OMA; PIAACYR; -. DR BioCyc; NMAR436308:GI3J-1339-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 116 AA; 13298 MW; 0C830B7CAD389C15 CRC64; MIIMQELVQT RKIMDDERKQ IILEVLADKY CKQILHDTLE KPKSAMELSS DKKIPISTVY RRLQTLYDAK LLAISGSINE DGKKYFLYKS KVKSISLQCN LEETSIEIVP NSSNAS // ID A9A4C1_NITMS Unreviewed; 426 AA. AC A9A4C1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12610.1}; GN OrderedLocusNames=Nmar_0714 {ECO:0000313|EMBL:ABX12610.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12610.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12610.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12610.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12610.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0714; -. DR EnsemblBacteria; ABX12610; ABX12610; Nmar_0714. DR KEGG; nmr:Nmar_0714; -. DR eggNOG; arCOG00373; Archaea. DR eggNOG; COG0419; LUCA. DR OMA; QFTKISR; -. DR BioCyc; NMAR436308:GI3J-740-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 202 229 {ECO:0000256|SAM:Coils}. FT COILED 235 262 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 426 AA; 48633 MW; 693B5B38DD80B7A9 CRC64; MVFGWGKKKQ EEKVVEEIPQ SKDVSLDDVE KIVDDLKKLR ESQTVSEVKH LRNSTAPLIE DLIKIGNMLE KDTLNVDDID KHLAVIVVRG KKQVIDVIKR GVVSLPDVSS IESAKKLDNS LNQILKKVGD VLGRQTRVIH IFAKKYANQL KDNLEVMNQN RSNIHDVLQN FENTESTSSE IINALKKIET LKSKKIEKDQ KIINTNNELE STKEQLSSLE KNIDEIKSSD EYKKYLESKK SLELFENEKA KIKNEINSQF TKISRPLGRY EYTSSLEKDQ KNILTKLVEN PFDVLTSENK DSIIVILENV RKNVTSGSIS VKDVEKTLSQ ITETVETLDG FISQVSTYFQ KHQKMSNDLD SLRSEKLTSL ESEFAKTSDS KNDLELKSET FQGEIDEIDT SIPQLVTEIE KKLRSFSNTK YTVLMS // ID A9A431_NITMS Unreviewed; 204 AA. AC A9A431; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Translin {ECO:0000313|EMBL:ABX12215.1}; GN OrderedLocusNames=Nmar_0319 {ECO:0000313|EMBL:ABX12215.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12215.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12215.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12215.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12215.1; -; Genomic_DNA. DR ProteinModelPortal; A9A431; -. DR STRING; 436308.Nmar_0319; -. DR EnsemblBacteria; ABX12215; ABX12215; Nmar_0319. DR KEGG; nmr:Nmar_0319; -. DR eggNOG; arCOG04318; Archaea. DR eggNOG; COG2178; LUCA. DR HOGENOM; HOG000224719; -. DR KO; K07477; -. DR OMA; TTDMVRG; -. DR BioCyc; NMAR436308:GI3J-334-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR Gene3D; 1.20.58.200; -; 1. DR InterPro; IPR002848; Translin. DR InterPro; IPR016069; Translin_C. DR PANTHER; PTHR10741; PTHR10741; 1. DR Pfam; PF01997; Translin; 1. DR SUPFAM; SSF74784; SSF74784; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 204 AA; 23669 MW; 7E66A9520CB63E7B CRC64; MTLKNVKPSL NKISKTLGNV QDSREFLLKN TREIIVLCSR SIIAIHKNDT KTGKNNLKKA ESLLKKYKKK ATGDLRRYII TPEQEFVEAA CLIAIVEKKE IPSDKKLGVM PESYVLGLLD CIGELKRMVF DKIRIGEIEE ATRVFEVMEN LYLQLYTFSM YDKVVKEARR KIDVNRILVD DVRSAITEEK RRTELIKTLK KFEK // ID A9A4W5_NITMS Unreviewed; 115 AA. AC A9A4W5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ABX13419.1}; GN OrderedLocusNames=Nmar_1523 {ECO:0000313|EMBL:ABX13419.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13419.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13419.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13419.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13419.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4W5; -. DR STRING; 436308.Nmar_1523; -. DR EnsemblBacteria; ABX13419; ABX13419; Nmar_1523. DR KEGG; nmr:Nmar_1523; -. DR eggNOG; arCOG02305; Archaea. DR eggNOG; COG0347; LUCA. DR HOGENOM; HOG000017847; -. DR KO; K04751; -. DR BioCyc; NMAR436308:GI3J-1565-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030234; F:enzyme regulator activity; IEA:InterPro. DR GO; GO:0006808; P:regulation of nitrogen utilization; IEA:InterPro. DR Gene3D; 3.30.70.120; -; 1. DR InterPro; IPR002187; N-reg_PII. DR InterPro; IPR011322; N-reg_PII-like_a/b. DR InterPro; IPR015867; N-reg_PII/ATP_PRibTrfase_C. DR Pfam; PF00543; P-II; 1. DR PRINTS; PR00340; PIIGLNB. DR SMART; SM00938; P-II; 1. DR SUPFAM; SSF54913; SSF54913; 1. DR PROSITE; PS51343; PII_GLNB_DOM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 11782 MW; C9B97F96D2586E41 CRC64; MQMKRIEATV QVDKAGAVSD AIKDIVGGFT ITEGKGRGSG KRQEIRSGRG TGSFTAEYNK VATVITVVDD SEVEKVSSAI ADAAFTGKGG DGIITVSSVE SALNIASKKT GSEAL // ID A9A3J8_NITMS Unreviewed; 432 AA. AC A9A3J8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 62. DE RecName: Full=Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; DE Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118}; DE AltName: Full=Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118}; GN Name=tuf {ECO:0000256|HAMAP-Rule:MF_00118}; GN OrderedLocusNames=Nmar_1034 {ECO:0000313|EMBL:ABX12930.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12930.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12930.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12930.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: This protein promotes the GTP-dependent binding of CC aminoacyl-tRNA to the A-site of ribosomes during protein CC biosynthesis. {ECO:0000256|HAMAP-Rule:MF_00118}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00118}. CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase CC superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00118}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12930.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3J8; -. DR SMR; A9A3J8; 4-426. DR STRING; 436308.Nmar_1034; -. DR EnsemblBacteria; ABX12930; ABX12930; Nmar_1034. DR KEGG; nmr:Nmar_1034; -. DR eggNOG; arCOG01561; Archaea. DR eggNOG; COG5256; LUCA. DR HOGENOM; HOG000229291; -. DR KO; K03231; -. DR OMA; PASTIFH; -. DR BioCyc; NMAR436308:GI3J-1065-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00118_A; EF_Tu_A; 1. DR InterPro; IPR031157; G_TR_CS. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000795; TF_GTP-bd_dom. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR009001; Transl_elong_EF1A/Init_IF2_C. DR InterPro; IPR004539; Transl_elong_EF1A_euk/arc. DR InterPro; IPR004161; Transl_elong_EFTu/EF1A_2. DR InterPro; IPR004160; Transl_elong_EFTu/EF1A_C. DR Pfam; PF03144; GTP_EFTU_D2; 1. DR Pfam; PF03143; GTP_EFTU_D3; 1. DR PRINTS; PR00315; ELONGATNFCT. DR SUPFAM; SSF50447; SSF50447; 1. DR SUPFAM; SSF50465; SSF50465; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00483; EF-1_alpha; 1. DR PROSITE; PS00301; G_TR_1; 1. DR PROSITE; PS51722; G_TR_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00118}; KW Elongation factor {ECO:0000256|HAMAP-Rule:MF_00118, KW ECO:0000313|EMBL:ABX12930.1}; KW GTP-binding {ECO:0000256|HAMAP-Rule:MF_00118, KW ECO:0000256|RuleBase:RU000323}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00118, KW ECO:0000256|RuleBase:RU000323}; KW Nucleotidyltransferase {ECO:0000313|EMBL:ABX12930.1}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00118, KW ECO:0000313|EMBL:ABX12930.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12930.1}. FT DOMAIN 4 228 Tr-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51722}. FT NP_BIND 13 20 GTP. {ECO:0000256|HAMAP-Rule:MF_00118}. FT NP_BIND 91 95 GTP. {ECO:0000256|HAMAP-Rule:MF_00118}. FT NP_BIND 153 156 GTP. {ECO:0000256|HAMAP-Rule:MF_00118}. SQ SEQUENCE 432 AA; 47048 MW; E779589642F53B41 CRC64; MADKPHLNLI VTGHIDNGKS TTMGHFLMDL GVVDERTIAS HASESEKTGK GDTFKYAWVM DNIKDERERG ITIDLAFQKF ESPKYFFTLI DAPGHRDFIK NMITGASEAD AAVLVLSAKE GETDTAIAAG GQAREHAFLL KTLGVNQLIV AINKMDDSNY SEEAFKVAKE KGEKLVKSVG YKLENVPFIP VSGWKGDNLV KKSENMSWYS GKTLLEAFDD FTVSEKPIGK PLRVPIQDVY TITGVGTVPV GRVETGVMKA GDKIVVMPSG APGEIKSIET HHTEMPSAEA GDNIGFNLRG VEKKDIKRGD VLGSPDNPPN VAKEFKAQII VIHHPTAIAP GYTPVMHAHT AQVAATVTEF LQKINPASGA VEEENPKFLK VGDSAIVKIR PVRPTCIETF QEFPEMGRFA LRDMGATIAA GIVKEITEEY KP // ID A9A1N2_NITMS Unreviewed; 230 AA. AC A9A1N2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13547.1}; GN OrderedLocusNames=Nmar_1651 {ECO:0000313|EMBL:ABX13547.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13547.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13547.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13547.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13547.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13547; ABX13547; Nmar_1651. DR KEGG; nmr:Nmar_1651; -. DR eggNOG; arCOG08794; Archaea. DR eggNOG; ENOG4110ZRW; LUCA. DR HOGENOM; HOG000110053; -. DR OMA; VINSETS; -. DR BioCyc; NMAR436308:GI3J-1696-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 207 227 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 230 AA; 24694 MW; D5DB9CB3C646950A CRC64; MNSIFVPIHV KIITCNYKMI AMKIIIFGII GLLFSIGMIA PSFAHTTVNV EQYEIEAGWG VEPPVVGIRN EFMLKIIERG EKEGTFTGVT SAFKDVDVTT MFGGAAKKIE VNSDPRPGYY FSPVIPTKTG TYMIELKGEI RGVPVDIKIP IEDVESTAVL DFPPTSSEGT ADVAALKNAI SSLQQDVSKL KSGETEVTSD GGAAYDFAIF GLSIAGAAII LAIIALVKRK // ID A9A5Q6_NITMS Unreviewed; 305 AA. AC A9A5Q6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=MT-A70 family protein {ECO:0000313|EMBL:ABX13061.1}; GN OrderedLocusNames=Nmar_1165 {ECO:0000313|EMBL:ABX13061.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13061.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13061.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13061.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13061.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1165; -. DR REBASE; 16735; M.NmaSCMORF1165P. DR EnsemblBacteria; ABX13061; ABX13061; Nmar_1165. DR KEGG; nmr:Nmar_1165; -. DR eggNOG; COG4725; LUCA. DR OMA; WAKRRID; -. DR BioCyc; NMAR436308:GI3J-1197-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR007757; MT-A70-like. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF05063; MT-A70; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS51143; MT_A70; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 305 AA; 35054 MW; 751133B388170C0F CRC64; MIDETLLQDL PLGQQIEITE NTIRKNFTFS EMCEIISKLK PKLDEEAKKR RQAGVKLSPG EPKFKVRDEI AHYVGVSGGQ IDKIMAIEQQ VRENPKEFGN IPQRIESGMS IDYAHKMINT AKKATTPTPN LPKNQYEVIV ADPPWKYDLP LEGAPDYKTM TLEEMKLEIP NVPSYKDCIL FMWTTNPKLD EALSLMKHWG FTYKTNMVWV KQKNNKLQNG TGYYFKGSHE LLLVGTKGNP GVPPESVRVS SVGMAERTRH SEKPRMFYRM IEKYYPAKKK FEMFARGKDS ADDGTWTYWG DSVQD // ID A9A523_NITMS Unreviewed; 213 AA. AC A9A523; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11932.1}; GN OrderedLocusNames=Nmar_0032 {ECO:0000313|EMBL:ABX11932.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11932.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11932.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11932.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11932.1; -; Genomic_DNA. DR EnsemblBacteria; ABX11932; ABX11932; Nmar_0032. DR KEGG; nmr:Nmar_0032; -. DR eggNOG; arCOG10513; Archaea. DR eggNOG; ENOG41110VC; LUCA. DR BioCyc; NMAR436308:GI3J-32-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 213 AA; 23479 MW; 4686AA1A47517285 CRC64; MVKPQNRTIG VIAVLLMLGA SPITVTYSFA DNTGVYEPKG SSKNEGLGVI LTEKMVDGKL KVQRYALPSD TSKEDMQRMM SSDISGWAIM NYKAYNAGIT LFDGKAVKVG QDLWEISTNG VLSLGEREFD IELSGKSNGS HVELHGTASE EDLSYKVVFS GKFSDNENVF EIFFNSAVNP EMGQNIKFLQ IGDTSFEKSV DFNQEFRNSI SVK // ID A9A225_NITMS Unreviewed; 432 AA. AC A9A225; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ABX12438.1}; DE EC=2.7.4.7 {ECO:0000313|EMBL:ABX12438.1}; GN OrderedLocusNames=Nmar_0542 {ECO:0000313|EMBL:ABX12438.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12438.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12438.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12438.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12438.1; -; Genomic_DNA. DR ProteinModelPortal; A9A225; -. DR STRING; 436308.Nmar_0542; -. DR EnsemblBacteria; ABX12438; ABX12438; Nmar_0542. DR KEGG; nmr:Nmar_0542; -. DR eggNOG; arCOG00020; Archaea. DR eggNOG; ENOG4102U9M; Archaea. DR eggNOG; COG0351; LUCA. DR eggNOG; COG1992; LUCA. DR HOGENOM; HOG000225273; -. DR KO; K00941; -. DR OMA; EGATIPW; -. DR BioCyc; NMAR436308:GI3J-564-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008972; F:phosphomethylpyrimidine kinase activity; IEA:UniProtKB-EC. DR GO; GO:0004789; F:thiamine-phosphate diphosphorylase activity; IEA:InterPro. DR GO; GO:0009228; P:thiamine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.1190.20; -; 1. DR Gene3D; 3.40.225.10; -; 1. DR InterPro; IPR001303; Aldolase_II/adducin_N. DR InterPro; IPR004399; HMP/HMP-P_kinase. DR InterPro; IPR013749; PM/HMP-P_kinase-1. DR InterPro; IPR029056; Ribokinase-like. DR InterPro; IPR019293; ThiN. DR Pfam; PF08543; Phos_pyr_kin; 1. DR Pfam; PF10120; ThiP_synth; 1. DR SUPFAM; SSF53613; SSF53613; 1. DR SUPFAM; SSF53639; SSF53639; 1. DR TIGRFAMs; TIGR00097; HMP-P_kinase; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12438.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12438.1}. FT DOMAIN 10 247 Phos_pyr_kin. {ECO:0000259|Pfam:PF08543}. SQ SEQUENCE 432 AA; 47470 MW; 48EBDB20189EFB70 CRC64; MNILSIGGSD PSSGAGIQSD IRVFSALGVH TLTVITAITS QNTSKFGMVE PVSSKILQKQ LESVFSDFKI NGVKIGMVYN SKIIKIIHQQ LKKLKIPIVV DPVIRSTTGG SLIENNARKD FQKYIVPLAT IITPNKKEAE LLTKMKISTK NTPEKVAKEI QNMGAKNVTI TGIEEKKKVS DFVLEKNSKY IISGEKIPKI NHGSGCIHSA AVVYSLAKKK SIKESLYFAK KFTYKSIKNA KKIGKGIAIT DIQSKNKIED ELSSAITKFI KLKGIYKNIP ECQTNFVFSK QRPKSTKDVL GISGRIVKAG TNVLVAGDLK YGGSKHVATA LLSMNKKYPG ICSAINLKYQ STTLSKIKKS KLEVSSYDRS KEPKHVKIKG STIRWGINSA IKNSKKIPDV IFHKGDFGKE PMIIVFGKTP ENVLEKILKI KG // ID A9A304_NITMS Unreviewed; 427 AA. AC A9A304; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 59. DE SubName: Full=Histidyl-tRNA synthetase {ECO:0000313|EMBL:ABX12132.1}; DE EC=6.1.1.21 {ECO:0000313|EMBL:ABX12132.1}; GN OrderedLocusNames=Nmar_0236 {ECO:0000313|EMBL:ABX12132.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12132.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12132.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12132.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12132.1; -; Genomic_DNA. DR ProteinModelPortal; A9A304; -. DR STRING; 436308.Nmar_0236; -. DR EnsemblBacteria; ABX12132; ABX12132; Nmar_0236. DR KEGG; nmr:Nmar_0236; -. DR eggNOG; arCOG00404; Archaea. DR eggNOG; COG0124; LUCA. DR HOGENOM; HOG000018073; -. DR KO; K01892; -. DR OMA; CGGGNFK; -. DR BioCyc; NMAR436308:GI3J-242-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004821; F:histidine-tRNA ligase activity; IEA:UniProtKB-EC. DR GO; GO:0006427; P:histidyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 3.40.50.800; -; 1. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004154; Anticodon-bd. DR InterPro; IPR015807; His-tRNA-ligase. DR InterPro; IPR004516; HisRS/HisZ. DR PANTHER; PTHR11476; PTHR11476; 1. DR Pfam; PF03129; HGTP_anticodon; 1. DR PIRSF; PIRSF001549; His-tRNA_synth; 1. DR SUPFAM; SSF52954; SSF52954; 1. DR TIGRFAMs; TIGR00442; hisS; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 4: Predicted; KW Aminoacyl-tRNA synthetase {ECO:0000313|EMBL:ABX12132.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX12132.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 21 360 AA_TRNA_LIGASE_II. FT {ECO:0000259|PROSITE:PS50862}. SQ SEQUENCE 427 AA; 48491 MW; 969E93DE5D251678 CRC64; MELPRGMKDF EANENSNIEH VRNHFKKLSN LYGFSFMEPS VLESLSTLET KSGPAIRDEI YYFKDKGDRE VALRFDFTMG LTRYATAQKS MKLPAKISAF GGVFRYDEPQ KGRYRYFHQW DVEVYGKKTL ESEAEIIELT SRLFDSLLLK DIVIDINHRN LVESYINKIF DITDSDKVTD ILRAIDKIAK KSKDEILTEF TKKGYDTAKL EKILEFSQVK GTISEVEKIF DTTQLESWDE LKQLFDSLEN RGVSNVRINF GIVRGLDYYS GMVFEVFDKN SKLGALAGGG RYDTLTKAFG RDDIGATGVA GGVERIILTM QEQKIIPEIL QNRVAVVYIN EEMQKVAHSI TSLLRLNNIP ADIDLAGRNL KKQMDNAGTA RYSIIVGPQE LENGNVVLHD MKDGKEGTIS LEKLTEDPNS VLNLEKL // ID A9A569_NITMS Unreviewed; 505 AA. AC A9A569; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX12268.1}; GN OrderedLocusNames=Nmar_0372 {ECO:0000313|EMBL:ABX12268.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12268.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12268.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12268.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12268.1; -; Genomic_DNA. DR ProteinModelPortal; A9A569; -. DR STRING; 436308.Nmar_0372; -. DR EnsemblBacteria; ABX12268; ABX12268; Nmar_0372. DR KEGG; nmr:Nmar_0372; -. DR eggNOG; arCOG02358; Archaea. DR eggNOG; COG0642; LUCA. DR BioCyc; NMAR436308:GI3J-388-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR021424; DUF3068. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF11271; DUF3068; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12268.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12268.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 251 271 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 303 503 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 505 AA; 57468 MW; E21C1F0C52082BB2 CRC64; MKKAKNPWGL IIFSIIAIIV IGSWVLVATQ ILKNSPATFE NVQQYIGEVR YAGEIGRELS KPVISNDFSE DKIVNQNGNI LEIESSYVVT NVITSETIGE NENTYYVDVN TRKHADNNQW YFKFPPNVQK QDYVLFHPNM GVPAMFVFEG TKEINDVELY NFSCQSMRDD FSHAYERFLP EIVYGDQTCI TSIEPVTGKT IEFTISWDLY VIRDGEYISV EQGESETSEF SKSTQLQSAL DTKQLFFIYD YVVPVFLVLV FVSVFFTIMY INKSSERGQI IIEQLEEMQK TEKITTIGHL ASRLAHDIRN PLSVIQMTTD ILSNNPDISE KFQKYAGSIT ESIQRISHQV NNVLDYVQQK PLNLTKIPVS RIIDSAEGSI KIPENITIEK TTTDDEIVCD YHLIEIVVIN IITNAIYAIT PETGKIKIEI RREHHLIKIE ISNTGEPIPE ESLEKIFEPL YTTKQEGTGL GLASCKSIID QHKGTISVKN DPTTFTIKLP RNLEN // ID A9A5R9_NITMS Unreviewed; 190 AA. AC A9A5R9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13074.1}; GN OrderedLocusNames=Nmar_1178 {ECO:0000313|EMBL:ABX13074.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13074.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13074.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13074.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13074.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13074; ABX13074; Nmar_1178. DR KEGG; nmr:Nmar_1178; -. DR eggNOG; ENOG4102U9I; Archaea. DR eggNOG; ENOG4110ZK8; LUCA. DR BioCyc; NMAR436308:GI3J-1210-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 121 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 128 148 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 160 179 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 190 AA; 20916 MW; A8AE3C86ADCC363F CRC64; MALIPFLVDI FQDPIFSILA VIGAFGVGLF QGIILGRAIL VRFPRLQNHL KTVSITLFVL FLANAILSVP RFASPEKIEF SNLSAGSPAE LASLLFLIFG MNTGFLTVLA ISVTVMTFVI LKFTNLHGIV KLFVFFFSSL LLVLTGISRF TDLTPSTFEV LLYFLYQLGI TIGILGGTIR KIKPKKLDLE // ID A9A4P5_NITMS Unreviewed; 226 AA. AC A9A4P5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13023.1}; GN OrderedLocusNames=Nmar_1127 {ECO:0000313|EMBL:ABX13023.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13023.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13023.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13023.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13023.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13023; ABX13023; Nmar_1127. DR KEGG; nmr:Nmar_1127; -. DR BioCyc; NMAR436308:GI3J-1159-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 226 AA; 24343 MW; EE0936AAD8146008 CRC64; MTKKIPSDKE ILDDMIDVFD PTLPVFTPLS IVLAGLASQK SPLHEIPEPD KWKEKAKRGL GLTVVKQGKL TATREGNCVV RRGTHIFKHR LHSICEPHST VIIVEKSSSE PAGGGATILG SGGSVTTANT IYRVAKYDIG TLYRYEFRVT IKVKLTVCPG QEPTSKKEVV GGGWFLAGVV SQSICKREII ADGIDNPNDA KKVADNSAPK GSGIKRSHSG LGLKDQ // ID A9A268_NITMS Unreviewed; 134 AA. AC A9A268; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Histidine triad (HIT) protein {ECO:0000313|EMBL:ABX12779.1}; GN OrderedLocusNames=Nmar_0883 {ECO:0000313|EMBL:ABX12779.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12779.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12779.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12779.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12779.1; -; Genomic_DNA. DR ProteinModelPortal; A9A268; -. DR STRING; 436308.Nmar_0883; -. DR EnsemblBacteria; ABX12779; ABX12779; Nmar_0883. DR KEGG; nmr:Nmar_0883; -. DR eggNOG; arCOG00419; Archaea. DR eggNOG; COG0537; LUCA. DR HOGENOM; HOG000061063; -. DR KO; K02503; -. DR OMA; GEAPCIK; -. DR BioCyc; NMAR436308:GI3J-911-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.30.428.10; -; 1. DR InterPro; IPR019808; Histidine_triad_CS. DR InterPro; IPR001310; Histidine_triad_HIT. DR InterPro; IPR011146; HIT-like. DR PANTHER; PTHR23089; PTHR23089; 1. DR Pfam; PF01230; HIT; 1. DR PRINTS; PR00332; HISTRIAD. DR SUPFAM; SSF54197; SSF54197; 1. DR PROSITE; PS00892; HIT_1; 1. DR PROSITE; PS51084; HIT_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 112 HIT. {ECO:0000259|PROSITE:PS51084}. SQ SEQUENCE 134 AA; 15119 MW; D4989C1D82F4B210 CRC64; MTCIFCDILD GKRDAHILYE DDSHVAFLDR YPIDVGHSLL IPREHHERIT EMTPENVGKL FSLVPKIANA ILVGAKADAF SIAQNNGRAA KQIIPHVHIH IIPRYNSKGT IWTKRQISTD SELEELAKKI RSAI // ID A9A476_NITMS Unreviewed; 78 AA. AC A9A476; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=SirA family protein {ECO:0000313|EMBL:ABX12565.1}; GN OrderedLocusNames=Nmar_0669 {ECO:0000313|EMBL:ABX12565.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12565.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12565.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12565.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12565.1; -; Genomic_DNA. DR ProteinModelPortal; A9A476; -. DR STRING; 436308.Nmar_0669; -. DR EnsemblBacteria; ABX12565; ABX12565; Nmar_0669. DR KEGG; nmr:Nmar_0669; -. DR eggNOG; arCOG02062; Archaea. DR eggNOG; COG0425; LUCA. DR HOGENOM; HOG000259290; -. DR OMA; PDIRAWA; -. DR BioCyc; NMAR436308:GI3J-694-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.110.40; -; 1. DR InterPro; IPR001455; TusA-like. DR Pfam; PF01206; TusA; 1. DR SUPFAM; SSF64307; SSF64307; 1. DR PROSITE; PS01148; UPF0033; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 33 UPF0033. {ECO:0000259|PROSITE:PS01148}. SQ SEQUENCE 78 AA; 8812 MW; 9380434A092656B8 CRC64; MSESTEKKLD ATGLFCPEPV FRTKIEIERM QVGETLTVSA DDPAAEDDIS RWVTRQGHEL LDMSKNGDVI TFQIKKVK // ID A9A1F4_NITMS Unreviewed; 272 AA. AC A9A1F4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; DE EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250}; DE AltName: Full=Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; GN OrderedLocusNames=Nmar_1237 {ECO:0000313|EMBL:ABX13133.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13133.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13133.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13133.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the catabolism of quinolinic acid (QA). CC {ECO:0000256|PIRNR:PIRNR006250}. CC -!- CATALYTIC ACTIVITY: Beta-nicotinate D-ribonucleotide + diphosphate CC + CO(2) = pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1- CC diphosphate. {ECO:0000256|PIRNR:PIRNR006250}. CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D- CC ribonucleotide from quinolinate: step 1/1. CC {ECO:0000256|PIRNR:PIRNR006250}. CC -!- SUBUNIT: Hexamer formed by 3 homodimers. CC {ECO:0000256|PIRNR:PIRNR006250}. CC -!- SIMILARITY: Belongs to the NadC/ModD family. CC {ECO:0000256|PIRNR:PIRNR006250}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13133.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1F4; -. DR STRING; 436308.Nmar_1237; -. DR EnsemblBacteria; ABX13133; ABX13133; Nmar_1237. DR KEGG; nmr:Nmar_1237; -. DR eggNOG; arCOG01482; Archaea. DR eggNOG; COG0157; LUCA. DR HOGENOM; HOG000224023; -. DR KO; K00767; -. DR OMA; LYDMIML; -. DR BioCyc; NMAR436308:GI3J-1270-MONOMER; -. DR UniPathway; UPA00253; UER00331. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004514; F:nicotinate-nucleotide diphosphorylase (carboxylating) activity; IEA:UniProtKB-EC. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR Gene3D; 3.90.1170.20; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR004393; NadC. DR InterPro; IPR027277; NadC/ModD. DR InterPro; IPR002638; Quinolinate_PRibosylTrfase_C. DR InterPro; IPR022412; Quinolinate_PRibosylTrfase_N. DR Pfam; PF01729; QRPTase_C; 1. DR Pfam; PF02749; QRPTase_N; 1. DR PIRSF; PIRSF006250; NadC_ModD; 1. DR SUPFAM; SSF51690; SSF51690; 1. DR TIGRFAMs; TIGR00078; nadC; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosyltransferase {ECO:0000256|PIRNR:PIRNR006250, KW ECO:0000313|EMBL:ABX13133.1}; KW Pyridine nucleotide biosynthesis {ECO:0000256|PIRNR:PIRNR006250}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|PIRNR:PIRNR006250, KW ECO:0000313|EMBL:ABX13133.1}. FT DOMAIN 18 103 QRPTase_N. {ECO:0000259|Pfam:PF02749}. FT DOMAIN 105 271 QRPTase_C. {ECO:0000259|Pfam:PF01729}. SQ SEQUENCE 272 AA; 29776 MW; AD17D65B22C2A762 CRC64; MLSFNSKKQL SQFLAEDIGK GDITSALLPK KKITVRIISR ESAIVGGAAH ARQIFKIKGC NARILKKDGS KVRPNETIMT ISGDAGKILT CERTALNLLT RMSGIATQTN ELVKKIPKKT KLYATRKTAP GLRYFDKEAV EIGGGKKHRL RLDEMVMIKD NHIAVGSSLE SLIKKAKKKH RKFEVEVENT PDAVLAAKEG ATIIMLDNFT PNQIRKTIAV LKNQKLRKKV LLEASGGINS KNISKYGQTG VDIISVGSIT NSVKGIDVSL EI // ID A9A4P4_NITMS Unreviewed; 82 AA. AC A9A4P4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13022.1}; GN OrderedLocusNames=Nmar_1126 {ECO:0000313|EMBL:ABX13022.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13022.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13022.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13022.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13022.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13022; ABX13022; Nmar_1126. DR KEGG; nmr:Nmar_1126; -. DR eggNOG; arCOG10577; Archaea. DR eggNOG; ENOG4110ZV7; LUCA. DR BioCyc; NMAR436308:GI3J-1157-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 82 AA; 9676 MW; D05FB5CF9FCA4C6A CRC64; MSLQEFDALI DRMKLAFEYA ENLGQYTDAA KILFQMNEQL PDDLQIDLEE LENSDLAKSF VMRYNSDIKS AIVDYRQRLM NF // ID A9A186_NITMS Unreviewed; 261 AA. AC A9A186; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=ABC-2 type transporter {ECO:0000313|EMBL:ABX12372.1}; GN OrderedLocusNames=Nmar_0476 {ECO:0000313|EMBL:ABX12372.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12372.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12372.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12372.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12372.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0476; -. DR EnsemblBacteria; ABX12372; ABX12372; Nmar_0476. DR KEGG; nmr:Nmar_0476; -. DR eggNOG; arCOG01467; Archaea. DR eggNOG; COG0842; LUCA. DR HOGENOM; HOG000223008; -. DR KO; K01992; -. DR OMA; TFMAPGI; -. DR BioCyc; NMAR436308:GI3J-496-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:InterPro. DR InterPro; IPR013525; ABC_2_trans. DR InterPro; IPR000412; ABC_2_transport. DR Pfam; PF01061; ABC2_membrane; 1. DR PIRSF; PIRSF006648; DrrB; 1. DR PRINTS; PR00164; ABC2TRNSPORT. DR PROSITE; PS51012; ABC_TM2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 44 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 64 86 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 107 134 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 140 165 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 194 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 229 253 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 9 221 ABC2_membrane. FT {ECO:0000259|Pfam:PF01061}. SQ SEQUENCE 261 AA; 28533 MW; 53C56CC69CB3B627 CRC64; MNTLMYDSYT IFWRELKRYK KSRSGVLIRL IQPAIWIIVI GNTFSGTQPL IQSVGFEGEY IEFMAPGVII LTAIFTSIFG GVNTLWDRRY GFMNKALTSP ISRSAIALGK MSAISLIAAL QASLILGIAL AIGVTFPNPI MIAPIMAIVI LFSLGFSGIS VMVAATAKSQ ETFWGIINFL GMPLFMLSPA LFPLELLPNW LATVAKLNPV TYTVLLVREM MTGVSEGGVS VLLSLGIIFV FVLVMVGLAS YVFTREVNKP F // ID A9A2H3_NITMS Unreviewed; 384 AA. AC A9A2H3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABX13212.1}; GN OrderedLocusNames=Nmar_1316 {ECO:0000313|EMBL:ABX13212.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13212.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13212.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13212.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13212.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H3; -. DR STRING; 436308.Nmar_1316; -. DR EnsemblBacteria; ABX13212; ABX13212; Nmar_1316. DR KEGG; nmr:Nmar_1316; -. DR eggNOG; arCOG00130; Archaea. DR eggNOG; COG0477; LUCA. DR HOGENOM; HOG000105448; -. DR KO; K08153; -. DR OMA; MDEIAWI; -. DR BioCyc; NMAR436308:GI3J-1349-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR Pfam; PF07690; MFS_1; 1. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50850; MFS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 41 63 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 89 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 152 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 158 180 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 206 226 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 238 255 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 267 284 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 290 313 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 325 343 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 355 373 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 4 378 MFS. {ECO:0000259|PROSITE:PS50850}. SQ SEQUENCE 384 AA; 41823 MW; 6B1DFB9F3EE0CC9B CRC64; MNKVLILVNI TGLIIGISYG LHGPILPVFA KNVIGATYSE LGLIGLTNFI PYMFIPLFVG ILLDRFNNGY LLALGTAINS ASIYLLSIAQ SVPEIMGFRI MTGVAHAFFW PPCESIISNE STEKNRVKNI SWFTMFFVIG FMVGPLLGTV FLEGLDTTYR ILFQITAFIL ATALISSILV SRKSVRNHHE HFSFSSIKEM KRFPEVIILL LFCTSSFGII LTIYPAFLND NGMTDTDILL LFFVFGISRV ISLALAGKFA RKTSQTLIAA VFAVSAGLAI SVVADSIITF GIALVLMGFG FSIFFPLTLE IILSKTKKGI SGKIIGVYET VFGMGWAIGP TLGGPISQSL GDDTPYLIFC VIGIGVALLA IITRKKLEPQ RVLD // ID A9A1Y2_NITMS Unreviewed; 508 AA. AC A9A1Y2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Vinylacetyl-CoA Delta-isomerase {ECO:0000313|EMBL:ABX12103.1}; DE EC=5.3.3.3 {ECO:0000313|EMBL:ABX12103.1}; GN OrderedLocusNames=Nmar_0207 {ECO:0000313|EMBL:ABX12103.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12103.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12103.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12103.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12103.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Y2; -. DR SMR; A9A1Y2; 8-484. DR STRING; 436308.Nmar_0207; -. DR EnsemblBacteria; ABX12103; ABX12103; Nmar_0207. DR KEGG; nmr:Nmar_0207; -. DR eggNOG; arCOG02143; Archaea. DR eggNOG; COG2368; LUCA. DR HOGENOM; HOG000016514; -. DR KO; K14534; -. DR OMA; EEIIVMP; -. DR BioCyc; NMAR436308:GI3J-211-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016627; F:oxidoreductase activity, acting on the CH-CH group of donors; IEA:InterPro. DR GO; GO:0050393; F:vinylacetyl-CoA delta-isomerase activity; IEA:UniProtKB-EC. DR InterPro; IPR009075; AcylCo_DH/oxidase_C. DR InterPro; IPR009100; AcylCoA_DH/oxidase_NM_dom. DR InterPro; IPR004925; HpaB/PvcC/4-BUDH. DR InterPro; IPR024719; HpaB/PvcC/4-BUDH_C. DR InterPro; IPR024674; HpaB/PvcC/4-BUDH_N. DR Pfam; PF03241; HpaB; 1. DR Pfam; PF11794; HpaB_N; 1. DR PIRSF; PIRSF000331; HpaA_HpaB; 1. DR SUPFAM; SSF47203; SSF47203; 1. DR SUPFAM; SSF56645; SSF56645; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX12103.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 277 HpaB_N. {ECO:0000259|Pfam:PF11794}. FT DOMAIN 284 482 HpaB. {ECO:0000259|Pfam:PF03241}. SQ SEQUENCE 508 AA; 56765 MW; B55B783B90B346BE CRC64; MANVLKTIRS GDDYIESLRG RDLKVYLFGE LVKEPVDHPM IRPSINAVAE TYDLALREEA LASADSSITG LKVNRFLHIA ESAEDLVLQN KMQRKLGQNT GTCFQRCVGM DAMNSLHSTT FEIDEKHGTD YHKRFLEFVK MVQQENLVIG GAMTDPKGDR SKGPSEQDDP DLFTRIVDTD EKGVYVSGAK AHQTGCINSH WIILMPTIRL TESDKDWAIV GAIPADAKGV TYIYGRQSCD TRSMEEGDID DGNAKFGGQE ALIILDRVFI PWDKVFMHGE YEFASMLVER FTCYHRRSYV CKTGLGDVLI GAAATIADYN GVPKVSHIKD KIIEMTHLNE TIFAAGIASS HQGQKMKSGV YLNDDMLAQV CKHNVTRFPY EISRLAQDIA GGLVVTLPSE KDFRHPEAGP LLKKYLAGRK GVDVENRMRI LRLIENMTLG RNAVGYLTES MHGAGSPQAQ RIQIQRQMQV GYKKNLAKNL AGITNDVEEP KESSEYFKRV FKTKDSVL // ID A9A3Y2_NITMS Unreviewed; 246 AA. AC A9A3Y2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 56. DE SubName: Full=Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX13682.1}; GN OrderedLocusNames=Nmar_1786 {ECO:0000313|EMBL:ABX13682.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13682.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13682.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13682.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases CC (SDR) family. {ECO:0000256|RuleBase:RU000363}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13682.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Y2; -. DR STRING; 436308.Nmar_1786; -. DR EnsemblBacteria; ABX13682; ABX13682; Nmar_1786. DR KEGG; nmr:Nmar_1786; -. DR eggNOG; arCOG01265; Archaea. DR eggNOG; COG4221; LUCA. DR OMA; MEMGSAI; -. DR BioCyc; NMAR436308:GI3J-1834-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR020904; Sc_DH/Rdtase_CS. DR InterPro; IPR002347; SDR_fam. DR Pfam; PF00106; adh_short; 1. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00061; ADH_SHORT; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 246 AA; 26776 MW; DA1FF8A2B07067E8 CRC64; MIKDKVAIIT GASSGIGFAT ALALSKAGAK VAIGARRVDR LEELANKITE NGGEIFYQKL DVTQKSECDD FAKAVLEKWN SIDILVNNAG LMPLSFFKNL KVDEWDRMID VNIKGVLYST AAVITHMKEK KSGHIVNLSS VAGRIVFPAG SVYCATKHAV AAFSEGLRQE FSIRSNIRVT SIEPGVVDTE LNNTITDESL KGFVENAAKM EALHAEDIAN AILYAVDSPS YVNVNEILIR PTTQER // ID A9A3U5_NITMS Unreviewed; 217 AA. AC A9A3U5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13357.1}; GN OrderedLocusNames=Nmar_1461 {ECO:0000313|EMBL:ABX13357.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13357.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13357.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13357.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13357.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1461; -. DR EnsemblBacteria; ABX13357; ABX13357; Nmar_1461. DR KEGG; nmr:Nmar_1461; -. DR BioCyc; NMAR436308:GI3J-1498-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 217 AA; 25495 MW; 5F4ADC9328959BA0 CRC64; MIHCQELFET AHLQRMHIQV FQEKYLPELV YCSEKGFLSS DEIQYIDHYH DFLEFTCDDL KTIKPAFTSE IQQYGYSIAL DRCTDVDVIQ NNYGSFPLDI IENTQVEPEP ECKPEPRPEN EGGLWMFDYE KCEWNKKQWW MSDQLEKIIQ DCLDPENKIG DKGMSNGTTK LKTTTCTWQH GGFYNQVYVE EWADPVPLIQ DNKIIGPDGQ IFKILED // ID A9A3W6_NITMS Unreviewed; 218 AA. AC A9A3W6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13666.1}; GN OrderedLocusNames=Nmar_1770 {ECO:0000313|EMBL:ABX13666.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13666.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13666.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13666.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13666.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1770; -. DR EnsemblBacteria; ABX13666; ABX13666; Nmar_1770. DR KEGG; nmr:Nmar_1770; -. DR eggNOG; arCOG08811; Archaea. DR eggNOG; ENOG410Y49W; LUCA. DR HOGENOM; HOG000110431; -. DR OMA; MIDGHTA; -. DR BioCyc; NMAR436308:GI3J-1817-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 193 213 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 218 AA; 23847 MW; FA6ECD82987089E2 CRC64; MKLSILLLLL IIPGSIGIAY GHTVDAVGEY RVEIGWMNEP VVSGETNAIE FYVSPMDPCP EITDPIKCAE SQEFQNGVEG LKKTVKMQLI YKDESITLPL SPDHNIPGKY YAFVNPTVSG FYQANMLGTI EDTPISLSMH PPKVAERAYI EFPEPSDITV QQMIDGHTAL IEDISDLKDS VNNLEETPQQ MDMGYAGIGF GLIGIAIAIV ALAKSKKN // ID A9A532_NITMS Unreviewed; 307 AA. AC A9A532; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 62. DE RecName: Full=Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384}; DE Short=HK {ECO:0000256|HAMAP-Rule:MF_00384}; DE Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384}; DE EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384}; GN Name=thrB {ECO:0000256|HAMAP-Rule:MF_00384}; GN OrderedLocusNames=Nmar_0041 {ECO:0000313|EMBL:ABX11941.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11941.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11941.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11941.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the ATP-dependent phosphorylation of L- CC homoserine to L-homoserine phosphate. {ECO:0000256|HAMAP- CC Rule:MF_00384}. CC -!- CATALYTIC ACTIVITY: ATP + L-homoserine = ADP + O-phospho-L- CC homoserine. {ECO:0000256|HAMAP-Rule:MF_00384}. CC -!- PATHWAY: Amino-acid biosynthesis; L-threonine biosynthesis; L- CC threonine from L-aspartate: step 4/5. {ECO:0000256|HAMAP- CC Rule:MF_00384}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00384}. CC -!- SIMILARITY: Belongs to the GHMP kinase family. Homoserine kinase CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00384}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11941.1; -; Genomic_DNA. DR ProteinModelPortal; A9A532; -. DR STRING; 436308.Nmar_0041; -. DR EnsemblBacteria; ABX11941; ABX11941; Nmar_0041. DR KEGG; nmr:Nmar_0041; -. DR eggNOG; arCOG01027; Archaea. DR eggNOG; COG0083; LUCA. DR HOGENOM; HOG000247197; -. DR KO; K00872; -. DR OMA; FVHICKV; -. DR BioCyc; NMAR436308:GI3J-41-MONOMER; -. DR UniPathway; UPA00050; UER00064. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004413; F:homoserine kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.70.890; -; 1. DR HAMAP; MF_00384; Homoser_kinase; 1. DR InterPro; IPR013750; GHMP_kinase_C_dom. DR InterPro; IPR006204; GHMP_kinase_N_dom. DR InterPro; IPR006203; GHMP_knse_ATP-bd_CS. DR InterPro; IPR000870; Homoserine_kinase. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR Pfam; PF08544; GHMP_kinases_C; 1. DR Pfam; PF00288; GHMP_kinases_N; 1. DR PIRSF; PIRSF000676; Homoser_kin; 1. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55060; SSF55060; 1. DR TIGRFAMs; TIGR00191; thrB; 1. DR PROSITE; PS00627; GHMP_KINASES_ATP; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00384}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00384, KW ECO:0000256|RuleBase:RU003563}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00384}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00384, KW ECO:0000256|RuleBase:RU003563, ECO:0000313|EMBL:ABX11941.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00384, KW ECO:0000256|RuleBase:RU003563}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Threonine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00384}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00384, KW ECO:0000256|RuleBase:RU003563, ECO:0000313|EMBL:ABX11941.1}. FT DOMAIN 79 145 GHMP_kinases_N. FT {ECO:0000259|Pfam:PF00288}. FT DOMAIN 211 284 GHMP_kinases_C. FT {ECO:0000259|Pfam:PF08544}. FT NP_BIND 86 96 ATP. {ECO:0000256|HAMAP-Rule:MF_00384}. SQ SEQUENCE 307 AA; 32021 MW; 23EE5702E086EB26 CRC64; MASKVTVKAP SSTANLGPGF DVFGLAVDAF YDEVTLTKTK SRITIVTDDN IPTKPDNNTA GLVVKNMKKK FKIKSGVEIK IKKGVPAGFG MGSSAASAAA TAVAFDKLFG LKLDGNSLVE FAGSGEKASA GSVHYDNVAA SVLGGFVIVK TNPLQVTRVD PPTNLRMCVA VPKLEVPKKK TKVSRGVIPK KVKLTDSILN LSNASAIVAG FMKKDPELIG NSIKDVIVEP ARKHMIPGFD KVKENALKAG ALGVTISGAG PSVIAFSKSS ADLKKISSAM SRGFASAKTE CQTVICKPSK GAADKRR // ID A9A3X8_NITMS Unreviewed; 443 AA. AC A9A3X8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 52. DE RecName: Full=CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; DE EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264}; DE AltName: Full=CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; DE AltName: Full=tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01264}; DE AltName: Full=tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01264}; DE AltName: Full=tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; DE AltName: Full=tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01264}; GN Name=cca {ECO:0000256|HAMAP-Rule:MF_01264}; GN OrderedLocusNames=Nmar_1782 {ECO:0000313|EMBL:ABX13678.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13678.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13678.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13678.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the addition and repair of the essential 3'- CC terminal CCA sequence in tRNAs without using a nucleic acid CC template. Adds these three nucleotides in the order of C, C, and A CC to the tRNA nucleotide-73, using CTP and ATP as substrates and CC producing inorganic pyrophosphate. {ECO:0000256|HAMAP- CC Rule:MF_01264}. CC -!- CATALYTIC ACTIVITY: A tRNA precursor + 2 CTP + ATP = a tRNA with a CC 3' CCA end + 3 diphosphate. {ECO:0000256|HAMAP-Rule:MF_01264}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_01264}; CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01264}. CC -!- MISCELLANEOUS: A single active site specifically recognizes both CC ATP and CTP and is responsible for their addition. CC {ECO:0000256|HAMAP-Rule:MF_01264}. CC -!- SIMILARITY: Belongs to the tRNA nucleotidyltransferase/poly(A) CC polymerase family. Archaeal CCA-adding enzyme subfamily. CC {ECO:0000256|HAMAP-Rule:MF_01264}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13678.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X8; -. DR STRING; 436308.Nmar_1782; -. DR EnsemblBacteria; ABX13678; ABX13678; Nmar_1782. DR KEGG; nmr:Nmar_1782; -. DR eggNOG; arCOG04249; Archaea. DR eggNOG; COG1746; LUCA. DR HOGENOM; HOG000110387; -. DR KO; K07558; -. DR OMA; FMAFPLD; -. DR BioCyc; NMAR436308:GI3J-1829-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0052929; F:ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0052928; F:CTP:3'-cytidine-tRNA cytidylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0052927; F:CTP:tRNA cytidylyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016437; F:tRNA cytidylyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0042245; P:RNA repair; IEA:UniProtKB-KW. DR GO; GO:0001680; P:tRNA 3'-terminal CCA addition; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01264; CCA_arch; 1. DR InterPro; IPR008229; CCA-adding_arc. DR InterPro; IPR011068; NuclTrfase_I_C. DR InterPro; IPR002934; Polymerase_NTP_transf_dom. DR InterPro; IPR015329; tRNA_NucTransf2. DR Pfam; PF01909; NTP_transf_2; 1. DR Pfam; PF09249; tRNA_NucTransf2; 1. DR PIRSF; PIRSF005335; CCA_arch; 1. DR SUPFAM; SSF55003; SSF55003; 1. DR TIGRFAMs; TIGR03671; cca_archaeal; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01264}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_01264}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_01264}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01264}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264, KW ECO:0000313|EMBL:ABX13678.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW RNA repair {ECO:0000256|HAMAP-Rule:MF_01264}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01264}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01264, KW ECO:0000313|EMBL:ABX13678.1}; KW tRNA processing {ECO:0000256|HAMAP-Rule:MF_01264}. FT DOMAIN 34 133 NTP_transf_2. {ECO:0000259|Pfam:PF01909}. FT DOMAIN 152 258 tRNA_NucTransf2. FT {ECO:0000259|Pfam:PF09249}. FT METAL 63 63 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_01264}. FT METAL 65 65 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_01264}. FT BINDING 51 51 ATP or CTP. {ECO:0000256|HAMAP- FT Rule:MF_01264}. FT BINDING 54 54 ATP or CTP. {ECO:0000256|HAMAP- FT Rule:MF_01264}. FT BINDING 138 138 ATP or CTP. {ECO:0000256|HAMAP- FT Rule:MF_01264}. FT BINDING 158 158 ATP or CTP. {ECO:0000256|HAMAP- FT Rule:MF_01264}. FT BINDING 167 167 ATP or CTP. {ECO:0000256|HAMAP- FT Rule:MF_01264}. SQ SEQUENCE 443 AA; 50227 MW; 9F1C284A68A4F65A CRC64; MKKIIANIMK NVIPTKTIEK SKEGIAKTAL ELVKKEIEKF PEIIGVEFGG SFAKGTWLSK DADVDIFVRF KKSISEEKFE KISKKIGFDS LKEFSPYVRY SEHPYVEAKM KDTKINVVPF YDVKAGEWKS AADRSPFHTK FMSKSLTQKM RNEVRILKTF LKSNGIYGAE IAKQGFSGYV SEVLVLHFGS FENMIKSISK IEENQVIGKT SKKFDTSLVI IDPIDSNRNL AAAISDENIG KFILVCRAFK ENPKSDFFKN KKSRVSKKHW GNILSIKFNF KMRSPDIIWG QIKRATSSLN TQLELAGFTV LRSRAYTDQQ KEAYLLFLLE STKISDIYAK SGPEFFREGS SKSFISKNLS NAELVWIGNN KKIISLEKRK HVDASKFMSE FLKNNLQTGI PKGLQADFKQ GFKITIGEKG LSKSIKEVAS ELISTDGTLL HFN // ID A9A2E9_NITMS Unreviewed; 413 AA. AC A9A2E9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 60. DE RecName: Full=Adenosylhomocysteinase {ECO:0000256|RuleBase:RU000548}; DE EC=3.3.1.1 {ECO:0000256|RuleBase:RU000548}; GN OrderedLocusNames=Nmar_0964 {ECO:0000313|EMBL:ABX12860.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12860.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12860.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12860.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-homocysteine + H(2)O = L- CC homocysteine + adenosine. {ECO:0000256|RuleBase:RU000548}. CC -!- COFACTOR: CC Name=NAD(+); Xref=ChEBI:CHEBI:57540; CC Evidence={ECO:0000256|RuleBase:RU000548}; CC Note=Binds 1 NAD(+) per subunit. {ECO:0000256|RuleBase:RU000548}; CC -!- PATHWAY: Amino-acid biosynthesis; L-homocysteine biosynthesis; L- CC homocysteine from S-adenosyl-L-homocysteine: step 1/1. CC {ECO:0000256|RuleBase:RU000548}. CC -!- SIMILARITY: Belongs to the adenosylhomocysteinase family. CC {ECO:0000256|RuleBase:RU004166}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12860.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E9; -. DR STRING; 436308.Nmar_0964; -. DR EnsemblBacteria; ABX12860; ABX12860; Nmar_0964. DR KEGG; nmr:Nmar_0964; -. DR eggNOG; arCOG04137; Archaea. DR eggNOG; COG0499; LUCA. DR HOGENOM; HOG000227987; -. DR KO; K01251; -. DR OMA; DFFCTVT; -. DR BioCyc; NMAR436308:GI3J-992-MONOMER; -. DR UniPathway; UPA00314; UER00076. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004013; F:adenosylhomocysteinase activity; IEA:UniProtKB-EC. DR GO; GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR000043; Adenosylhomocysteinase. DR InterPro; IPR015878; Ado_hCys_hydrolase_NAD-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR23420; PTHR23420; 1. DR Pfam; PF05221; AdoHcyase; 2. DR Pfam; PF00670; AdoHcyase_NAD; 1. DR PIRSF; PIRSF001109; Ad_hcy_hydrolase; 1. DR SMART; SM00996; AdoHcyase; 1. DR SMART; SM00997; AdoHcyase_NAD; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR00936; ahcY; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|RuleBase:RU000548, KW ECO:0000313|EMBL:ABX12860.1}; NAD {ECO:0000256|RuleBase:RU000548}; KW One-carbon metabolism {ECO:0000256|RuleBase:RU000548}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 184 345 AdoHcyase_NAD. FT {ECO:0000259|SMART:SM00997}. FT BINDING 53 53 Substrate. FT {ECO:0000256|PIRSR:PIRSR001109-1}. FT BINDING 124 124 Substrate. FT {ECO:0000256|PIRSR:PIRSR001109-1}. FT BINDING 149 149 Substrate. FT {ECO:0000256|PIRSR:PIRSR001109-1}. FT BINDING 179 179 Substrate. FT {ECO:0000256|PIRSR:PIRSR001109-1}. FT BINDING 183 183 Substrate. FT {ECO:0000256|PIRSR:PIRSR001109-1}. SQ SEQUENCE 413 AA; 45766 MW; 0A5FBDBF3B15EBA5 CRC64; MSKVKSSAKL IKEGKLSYEW ARSHMQILDN TINRLKKSKP LKGVTLGFCL HITKETSVLL MGAKELGATV ACCGGNPLTT QDNIAAFLAS QGIHVYAWHG QSVKEYDWCI DQVLKHKPTI LTDDGADMNV KAHFDKRFKN MKILGATEET TAGVTRIRAV ENQGKLRYPV ILVNEAYTKH MFDNRYGTGQ STIDGYLRAM NLLMASKRVV VVGYGWVGRG VAARCHGMGS KVIVTEIDPV KALEAHMDGF EVMPMAQATK LGDIFITCTG MTSVIRKEHI LKMKDGAIMG NVGHFDVEID SEFLLKKSKS VKEVRPALDE CVLKNGKKVY LIGQGRLANL VAAEGHPPEV MAQSFSNQIL SVMYILKNHK KMENKIINVP EEIDTQVAVD ALKAMDVKID KLTPEQVKYA NSW // ID A9A1B9_NITMS Unreviewed; 178 AA. AC A9A1B9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=ATP--cobalamin adenosyltransferase {ECO:0000313|EMBL:ABX12754.1}; GN OrderedLocusNames=Nmar_0858 {ECO:0000313|EMBL:ABX12754.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12754.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12754.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12754.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12754.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1B9; -. DR STRING; 436308.Nmar_0858; -. DR EnsemblBacteria; ABX12754; ABX12754; Nmar_0858. DR KEGG; nmr:Nmar_0858; -. DR eggNOG; arCOG00489; Archaea. DR eggNOG; COG2096; LUCA. DR HOGENOM; HOG000291639; -. DR KO; K00798; -. DR OMA; GADLCTP; -. DR BioCyc; NMAR436308:GI3J-886-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 1.20.1200.10; -; 1. DR InterPro; IPR016030; AdoCbl_synth_CblAdoTrfase-like. DR InterPro; IPR029499; PduO-typ. DR Pfam; PF01923; Cob_adeno_trans; 1. DR ProDom; PD007457; AdoCbl_syn_CblAdoTrfase_PduO_N; 1. DR SUPFAM; SSF89028; SSF89028; 1. DR TIGRFAMs; TIGR00636; PduO_Nterm; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12754.1}. FT DOMAIN 3 164 Cob_adeno_trans. FT {ECO:0000259|Pfam:PF01923}. SQ SEQUENCE 178 AA; 20011 MW; D5F1C0EFFE2DEF1B CRC64; MKIYTKTGDD GNTGLQGNLR ISKSHPRIFA YGAVDEANAA LGIVLTNSLD EDIFDVLRKI QNDLFVVGSD LSNPNLNDVK NRVSLEMIQE LEQNIDKFES ELPPLTNFIL PGGSTPTSKL HYARTVVRRA ETLTVQLAEK DEINSNCIIY LNRLSDLFFV MGRLINKRNG TEDIIWKI // ID A9A4U5_NITMS Unreviewed; 189 AA. AC A9A4U5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13399.1}; GN OrderedLocusNames=Nmar_1503 {ECO:0000313|EMBL:ABX13399.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13399.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13399.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13399.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13399.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4U5; -. DR STRING; 436308.Nmar_1503; -. DR EnsemblBacteria; ABX13399; ABX13399; Nmar_1503. DR KEGG; nmr:Nmar_1503; -. DR eggNOG; arCOG08675; Archaea. DR eggNOG; ENOG41110FM; LUCA. DR HOGENOM; HOG000106171; -. DR KO; K10945; -. DR OMA; NAGNRWE; -. DR BioCyc; NMAR436308:GI3J-1545-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.120.570; -; 1. DR InterPro; IPR006833; NH3_CH4_mOase_B. DR InterPro; IPR023301; NH3_CH4_mOase_suB_N. DR Pfam; PF04744; Monooxygenase_B; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 189 AA; 20695 MW; 9778D6892BF6460A CRC64; MVEKKIFVFG LAVVLALGTL GFNWVESILP TADAHGVQAQ LQSRFVRIED ETFNRQSLQT GETLVLQGTL VSLVERDLRG WISIFSESTN AGNRWEMLSR DPPGNVFDIP GNSVVDYQLS AKALEAGVYH VHTQLNVAQV GPGLGPGQTV VVEGEPIIKP IPYTNIAYQS IMIGVGYVIT FATRPWQVI // ID A9A2U2_NITMS Unreviewed; 160 AA. AC A9A2U2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13619.1}; GN OrderedLocusNames=Nmar_1723 {ECO:0000313|EMBL:ABX13619.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13619.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13619.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13619.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13619.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1723; -. DR EnsemblBacteria; ABX13619; ABX13619; Nmar_1723. DR KEGG; nmr:Nmar_1723; -. DR eggNOG; arCOG10600; Archaea. DR eggNOG; ENOG411112Y; LUCA. DR BioCyc; NMAR436308:GI3J-1768-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 160 AA; 18065 MW; 7739B1B3761AE5A0 CRC64; MAKDKKKDEV EKPKKSGLQA FLKKRAPFYL AAVALIVISA QSVLSEKNFE NSLPEFSGEE QIAVDTLLNY NAGVESKLTV KEVIKNQIDE EYPDEKIYGH KKTVLDLSVT NVNSDEYNVI LNFKSYKGDM NFDWNVNVNS QEITSNNPDS KHVIDVVTFS // ID A9A3X0_NITMS Unreviewed; 292 AA. AC A9A3X0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE SubName: Full=Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:ABX13670.1}; DE EC=2.7.6.1 {ECO:0000313|EMBL:ABX13670.1}; GN OrderedLocusNames=Nmar_1774 {ECO:0000313|EMBL:ABX13670.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13670.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13670.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13670.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribose-phosphate pyrophosphokinase CC family. {ECO:0000256|RuleBase:RU004324}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13670.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X0; -. DR STRING; 436308.Nmar_1774; -. DR EnsemblBacteria; ABX13670; ABX13670; Nmar_1774. DR KEGG; nmr:Nmar_1774; -. DR eggNOG; arCOG00067; Archaea. DR eggNOG; COG0462; LUCA. DR HOGENOM; HOG000210450; -. DR KO; K00948; -. DR OMA; MGAKDVY; -. DR BioCyc; NMAR436308:GI3J-1821-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0004749; F:ribose phosphate diphosphokinase activity; IEA:UniProtKB-EC. DR GO; GO:0009116; P:nucleoside metabolic process; IEA:InterPro. DR GO; GO:0009165; P:nucleotide biosynthetic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.2020; -; 2. DR InterPro; IPR029099; Pribosyltran_N. DR InterPro; IPR000836; PRibTrfase_dom. DR InterPro; IPR029057; PRTase-like. DR InterPro; IPR005946; Rib-P_diPkinase. DR Pfam; PF00156; Pribosyltran; 1. DR Pfam; PF13793; Pribosyltran_N; 1. DR SUPFAM; SSF53271; SSF53271; 1. DR TIGRFAMs; TIGR01251; ribP_PPkin; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13670.1}; KW Nucleotide biosynthesis {ECO:0000256|RuleBase:RU004324}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13670.1}. FT DOMAIN 6 120 Pribosyltran_N. FT {ECO:0000259|Pfam:PF13793}. FT DOMAIN 156 265 Pribosyltran. {ECO:0000259|Pfam:PF00156}. SQ SEQUENCE 292 AA; 31843 MW; 1B3AA2C9DE7247F5 CRC64; MLGKLSVICG KSSEDLGKKL ARKIKANLVK SEVRIFPDGE SKITLKGNIS KRKSIVVQSI YPPVDTNLIQ ALSLISKAKE TSSEVIVVIP YMGYARQDRE FLPGEIVTMK VLAKLFKGAG ASKLIAVDIH SLIGLKYFTI KSKNVSAVPD LAAYFKKLSL KNPLVVSPDQ GGKERAKEFA KEMGIEFIAL QKKRDRKTGK VQIKTKQANV IGRDLILVDD MISTGGSIVN ATKFLKKEKC KRVFVACTHA LLMNDAEKKI KKSGVTKIIS ANTIPGNTSI VDVSNTIAKA II // ID A9A2F2_NITMS Unreviewed; 462 AA. AC A9A2F2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 58. DE RecName: Full=Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; DE EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041}; DE AltName: Full=Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; GN Name=cysS {ECO:0000256|HAMAP-Rule:MF_00041}; GN OrderedLocusNames=Nmar_0967 {ECO:0000313|EMBL:ABX12863.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12863.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12863.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12863.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-cysteine + tRNA(Cys) = AMP + CC diphosphate + L-cysteinyl-tRNA(Cys). {ECO:0000256|HAMAP- CC Rule:MF_00041}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00041}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00041}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00041}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|HAMAP-Rule:MF_00041}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12863.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2F2; -. DR STRING; 436308.Nmar_0967; -. DR EnsemblBacteria; ABX12863; ABX12863; Nmar_0967. DR KEGG; nmr:Nmar_0967; -. DR eggNOG; arCOG00486; Archaea. DR eggNOG; COG0215; LUCA. DR HOGENOM; HOG000245250; -. DR KO; K01883; -. DR OMA; FDVPSMP; -. DR BioCyc; NMAR436308:GI3J-995-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004817; F:cysteine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006423; P:cysteinyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR HAMAP; MF_00041; Cys_tRNA_synth; 1. DR InterPro; IPR015803; Cys-tRNA-ligase. DR InterPro; IPR015273; Cys-tRNA-synt_Ia_DALR. DR InterPro; IPR024909; Cys-tRNA/MSH_ligase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR032678; tRNA-synt_1_cat_dom. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR PANTHER; PTHR10890; PTHR10890; 1. DR Pfam; PF09190; DALR_2; 1. DR Pfam; PF01406; tRNA-synt_1e; 1. DR PRINTS; PR00983; TRNASYNTHCYS. DR SMART; SM00840; DALR_2; 1. DR SUPFAM; SSF47323; SSF47323; 1. DR TIGRFAMs; TIGR00435; cysS; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041, KW ECO:0000313|EMBL:ABX12863.1}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00041}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00041}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000313|EMBL:ABX12863.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00041}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00041}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00041}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00041}. FT DOMAIN 342 403 DALR_2. {ECO:0000259|SMART:SM00840}. FT COILED 403 449 {ECO:0000256|SAM:Coils}. FT MOTIF 27 37 "HIGH" region. {ECO:0000256|HAMAP- FT Rule:MF_00041}. FT MOTIF 261 265 "KMSKS" region. {ECO:0000256|HAMAP- FT Rule:MF_00041}. FT METAL 25 25 Zinc. {ECO:0000256|HAMAP-Rule:MF_00041}. FT METAL 204 204 Zinc. {ECO:0000256|HAMAP-Rule:MF_00041}. FT METAL 229 229 Zinc. {ECO:0000256|HAMAP-Rule:MF_00041}. FT METAL 233 233 Zinc. {ECO:0000256|HAMAP-Rule:MF_00041}. FT BINDING 264 264 ATP. {ECO:0000256|HAMAP-Rule:MF_00041}. SQ SEQUENCE 462 AA; 53320 MW; 38E30D6046721D51 CRC64; MKLQDTLSNA EQELDTSKKV KIYLCGVTVY DESHIGHART IIVFDVLRRY LEDKGIEIEF IQNFTDVDDK IINRAQAENT SAEAISTKYI ENYFKDFDGL NVKHATNYPK ATEHIEDIIK FIEKLIEKEI AYVSKNGVYF AVSKFPEYGK LSKKKIDELE SGARIEVDEA KNNPLDFAVW KFSDVEPLWD SPWGKGRPGW HIECSAMSTK YLGENFDIHG GGRDLIFPHH ENEIAQSESF TGNQFAKIWM HVGMVTIDGE KMSKSIGNIK SIKHVLENWG PNIIRLFCLS GHYSKPIDYS EELLKENLTK WRQAETCYYE LIHANSENSE KVGSIVEKLG SEFDKALEDD VNTHLALSAF FQLVKEANRL AAEEKLGKED AKIIKTEFLR MLKILGLNIP EMTEGMKQEI DTMIENREKF RQEKQFQEAD QIRDKLNEMN IELIDHKGKT IWMKKENIKA EK // ID A9A511_NITMS Unreviewed; 301 AA. AC A9A511; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; DE Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383}; GN Name=tfb {ECO:0000256|HAMAP-Rule:MF_00383}; GN OrderedLocusNames=Nmar_0020 {ECO:0000313|EMBL:ABX11920.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11920.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11920.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11920.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Stabilizes TBP binding to an archaeal box-A promoter. CC Also responsible for recruiting RNA polymerase II to the pre- CC initiation complex (DNA-TBP-TFIIB). {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00383}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00383}; CC -!- SIMILARITY: Belongs to the TFIIB family. {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC -!- SIMILARITY: Contains 1 TFIIB-type zinc finger. {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11920.1; -; Genomic_DNA. DR ProteinModelPortal; A9A511; -. DR STRING; 436308.Nmar_0020; -. DR EnsemblBacteria; ABX11920; ABX11920; Nmar_0020. DR KEGG; nmr:Nmar_0020; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; YMASHIR; -. DR BioCyc; NMAR436308:GI3J-20-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.472.10; -; 2. DR HAMAP; MF_00383; TF2B_arch; 1. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR023484; TFIIB_arc. DR InterPro; IPR023486; TFIIB_CS. DR InterPro; IPR013150; TFIIB_cyclin. DR InterPro; IPR013137; Znf_TFIIB. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF08271; TF_Zn_Ribbon; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SMART; SM00385; CYCLIN; 2. DR SUPFAM; SSF47954; SSF47954; 2. DR PROSITE; PS00782; TFIIB; 2. DR PROSITE; PS51134; ZF_TFIIB; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00383}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repeat {ECO:0000256|HAMAP-Rule:MF_00383}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00383}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00383}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00383}; KW Zinc-finger {ECO:0000256|HAMAP-Rule:MF_00383}. FT DOMAIN 5 36 TFIIB-type. FT {ECO:0000259|PROSITE:PS51134}. FT REPEAT 122 205 1. {ECO:0000256|HAMAP-Rule:MF_00383}. FT REPEAT 216 297 2. {ECO:0000256|HAMAP-Rule:MF_00383}. FT ZN_FING 5 36 TFIIB-type. {ECO:0000256|HAMAP- FT Rule:MF_00383}. FT METAL 9 9 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 12 12 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 28 28 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 31 31 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. SQ SEQUENCE 301 AA; 33455 MW; 94600678B1E040CC CRC64; MVSKTKELCP RCAQGKLVTD NESGEMFCSK CGFVITEKLQ EAGPEWRSFT QDEHGDRARA GAPTSLTMHD MGLATIINPV NKDASGRPLT ASMKSTIERL RTWDSRSQVH EPVDRNFRQA FSELNRLKDK LAISDAVIEK AAYIYRKALD KGLVRGRSIS ALMASALYAA CRDTETPRNL KDVEQAANIK RKDIARCYRL LVKELDLKMP VTDSIQCVAR IASRIGIAEK TKRYAVKVLK KAQENEVSAG KDPMGLAAAA LYLSCVKNGE DKTQRDIAEA ANVTEVTIRN RYKGLKESLE L // ID A9A5G5_NITMS Unreviewed; 721 AA. AC A9A5G5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; DE Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420}; DE EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420}; DE AltName: Full=Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; DE AltName: Full=Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; DE AltName: Full=Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; GN Name=purL {ECO:0000256|HAMAP-Rule:MF_00420}; GN OrderedLocusNames=Nmar_0780 {ECO:0000313|EMBL:ABX12676.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12676.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12676.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12676.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of the phosphoribosylformylglycinamidine synthase CC complex involved in the purines biosynthetic pathway. Catalyzes CC the ATP-dependent conversion of formylglycinamide ribonucleotide CC (FGAR) and glutamine to yield formylglycinamidine ribonucleotide CC (FGAM) and glutamate. The FGAM synthase complex is composed of CC three subunits. PurQ produces an ammonia molecule by converting CC glutamine to glutamate. PurL transfers the ammonia molecule to CC FGAR to form FGAM in an ATP-dependent manner. PurS interacts with CC PurQ and PurL and is thought to assist in the transfer of the CC ammonia molecule from PurQ to PurL. {ECO:0000256|HAMAP- CC Rule:MF_00420}. CC -!- CATALYTIC ACTIVITY: ATP + N(2)-formyl-N(1)-(5-phospho-D- CC ribosyl)glycinamide + L-glutamine + H(2)O = ADP + phosphate + 2- CC (formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_00420}. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5- CC phospho-D-ribosyl)glycinamide: step 1/2. {ECO:0000256|HAMAP- CC Rule:MF_00420}. CC -!- SUBUNIT: Monomer. Part of the FGAM synthase complex composed of 1 CC PurL, 1 PurQ and 2 PurS subunits. {ECO:0000256|HAMAP- CC Rule:MF_00420}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00420}. CC -!- SIMILARITY: Belongs to the FGAMS family. {ECO:0000256|HAMAP- CC Rule:MF_00420}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12676.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5G5; -. DR STRING; 436308.Nmar_0780; -. DR EnsemblBacteria; ABX12676; ABX12676; Nmar_0780. DR KEGG; nmr:Nmar_0780; -. DR eggNOG; arCOG00641; Archaea. DR eggNOG; COG0046; LUCA. DR HOGENOM; HOG000238227; -. DR KO; K01952; -. DR OMA; VMWQFAE; -. DR BioCyc; NMAR436308:GI3J-806-MONOMER; -. DR UniPathway; UPA00074; UER00128. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004642; F:phosphoribosylformylglycinamidine synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1330.10; -; 2. DR Gene3D; 3.90.650.10; -; 1. DR HAMAP; MF_00420; PurL_2; 1. DR InterPro; IPR010918; AIR_synth_C_dom. DR InterPro; IPR010074; PRibForGlyAmidine_synth_PurL. DR InterPro; IPR016188; PurM-like_N. DR Pfam; PF00586; AIRS; 2. DR Pfam; PF02769; AIRS_C; 2. DR PIRSF; PIRSF001587; FGAM_synthase_II; 1. DR SUPFAM; SSF56042; SSF56042; 2. DR TIGRFAMs; TIGR01736; FGAM_synth_II; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00420}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00420}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00420, ECO:0000313|EMBL:ABX12676.1}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00420}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00420}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00420}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00420}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 73 173 AIRS. {ECO:0000259|Pfam:PF00586}. FT DOMAIN 186 333 AIRS_C. {ECO:0000259|Pfam:PF02769}. FT DOMAIN 432 536 AIRS. {ECO:0000259|Pfam:PF00586}. FT DOMAIN 549 687 AIRS_C. {ECO:0000259|Pfam:PF02769}. FT REGION 79 82 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT REGION 294 296 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT ACT_SITE 34 34 {ECO:0000256|HAMAP-Rule:MF_00420}. FT ACT_SITE 80 80 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT METAL 78 78 Magnesium 1. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT METAL 102 102 Magnesium 2. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT METAL 250 250 Magnesium 2. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT BINDING 37 37 ATP. {ECO:0000256|HAMAP-Rule:MF_00420}. FT BINDING 101 101 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT BINDING 222 222 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT BINDING 474 474 ATP. {ECO:0000256|HAMAP-Rule:MF_00420}. FT BINDING 511 511 ATP; via amide nitrogen and carbonyl FT oxygen. {ECO:0000256|HAMAP- FT Rule:MF_00420}. FT BINDING 514 514 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00420}. SQ SEQUENCE 721 AA; 79152 MW; 1FFD22644383AD18 CRC64; MSLEPQELTE LKSKIGREPT STELQIIAAE WSEHCSYKSS KRHLKMLPMK GPLVITEKGY DSGVLDVGDG YVVTAHIESH NHPSAVEPYG GAATGVGGVI RDILSAGTRP IAIFDGLRFG DIEKDQQARW LFKNAVTGIA DYGNCLGIPT IGGEVEFDKC YENYALVDVA AVGFGKKENL IKNHAKKGDI VVLMGGSTGR DGIGGSQFAS DSLESEDRSA VQIPDPFIEK LIIEAILEAR NDKLIHAMKD LGGGGLSCAI SETADALEIG IEMDVDKVHT RESGMHPDEI MVSESQERML IVTSKTKFKK LQAICKKFRI GCSVIGTVKS DNQMHVKKGK KTFANLPTDV VANATLLDLP SKEPTYLKTI EKEKKLKPIS DYSKTMMKLL SSPNIASKIW VYGQYDHEVG IRTVVKPGRD ASVLRLDNGK FLSVKIDGNP KQCYINPREG AIGCFEEACR NVVCTGAKPI GMLDHLQFGS PKDPEIFWTF LESLKGLTDF AKDFKIPCVG GKVSLYNETP DGPIKPTPLI GVLGLIDKTP QIPQRISKDD CLIIVGETKD ELGGSEYFEY IHKFIGGKCP AVDFTESKKN MKSVLEIIPK KLLKSVHDCS KGGLAVAVSE LSMNNQIGCK VDLDKVPAKK LDVDRILFSE SHSRYLLTFD KKNLSKVEKI LKKNKTSYNI IGQFGGEKIQ FTKGKKSIID LRVDKAQKTW LNSLKDLVLH G // ID A9A3J9_NITMS Unreviewed; 381 AA. AC A9A3J9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12931.1}; GN OrderedLocusNames=Nmar_1035 {ECO:0000313|EMBL:ABX12931.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12931.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12931.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12931.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12931.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3J9; -. DR STRING; 436308.Nmar_1035; -. DR EnsemblBacteria; ABX12931; ABX12931; Nmar_1035. DR KEGG; nmr:Nmar_1035; -. DR eggNOG; arCOG04180; Archaea. DR eggNOG; COG1980; LUCA. DR HOGENOM; HOG000229394; -. DR KO; K01622; -. DR OMA; HLVAGWM; -. DR BioCyc; NMAR436308:GI3J-1066-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002803; FBPase_V. DR Pfam; PF01950; FBPase_3; 1. DR PIRSF; PIRSF015647; FBPtase_archl; 1. DR ProDom; PD014260; FBPase_V; 1. DR SUPFAM; SSF111249; SSF111249; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 381 AA; 41767 MW; BB240D812992056A CRC64; MENMKITVSV IKADVGGVGG HTKPSDGLLD AIRNTVKNSA DLLIDYYIGY CGDDTHIVMS HTHGVDNQQI HKLAWDAFMA GTQVAKEEGL YGAGQDLLKD SFSGNVKGMG PGVAEMEFEE RPNEAFTVFA ADKTEPGAFN YPIYRMFVDA LSNTGLIVNK NLADGVKINI MDVEKAQIAE LQLWEDKPTI EAALMYPGRY VVDSVTTKDG EPILAASTDR LHNIAGTYVG KDDPICVVRT QKKFPATEEV GSVFNNPHFV AGNTRGSHNM PLMPVKLNSA ATINFCIPIV EALVFSMHNG KFTGPFDGFS TPDWDLIRER ATEKAMAIRS QGFIHPATLV PSELEYAEGY RARMDVLESK MKPMEGTDSS GDRKENYEDP D // ID A9A197_NITMS Unreviewed; 99 AA. AC A9A197; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX12383.1}; GN OrderedLocusNames=Nmar_0487 {ECO:0000313|EMBL:ABX12383.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12383.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12383.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12383.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH arsR-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000711}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12383.1; -; Genomic_DNA. DR ProteinModelPortal; A9A197; -. DR STRING; 436308.Nmar_0487; -. DR EnsemblBacteria; ABX12383; ABX12383; Nmar_0487. DR KEGG; nmr:Nmar_0487; -. DR eggNOG; arCOG01680; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000144506; -. DR OMA; DMENELC; -. DR BioCyc; NMAR436308:GI3J-507-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR PRINTS; PR00778; HTHARSR. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR PROSITE; PS50987; HTH_ARSR_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000711}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000711}; KW Transcription regulation {ECO:0000256|RuleBase:RU000711}. FT DOMAIN 1 90 HTH arsR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50987}. SQ SEQUENCE 99 AA; 11160 MW; 841D8FA5900693E1 CRC64; MNGVNLLKCI CDETRFDILE LLQKNKELCV NDFVEKLEKD QPLVSHHLKT LKKCGIVKSR DEGKKAMYAI SNNQLSELIS NVTNASKKMP VLCSDDSCC // ID A9A2M2_NITMS Unreviewed; 158 AA. AC A9A2M2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13261.1}; GN OrderedLocusNames=Nmar_1365 {ECO:0000313|EMBL:ABX13261.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13261.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13261.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13261.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13261.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2M2; -. DR EnsemblBacteria; ABX13261; ABX13261; Nmar_1365. DR KEGG; nmr:Nmar_1365; -. DR eggNOG; arCOG11327; Archaea. DR eggNOG; ENOG4111168; LUCA. DR BioCyc; NMAR436308:GI3J-1399-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 28 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 158 AA; 17859 MW; 984720A7C98A4E95 CRC64; MKQNDRILII AGLVSGVMGL IVMVGFIGQG NIRHVEIFWT EKVEQTVVFQ EIDGETQIQA IKGVKGDNNP TLISRTAFAY VLTVINNGTT HHRLYIDGFN VQTDLLEPGQ QDTITFYPEN EGEFTYYDKR QHLEPLGKIK IFSVVPSDEF TGVWKDLV // ID A9A1R5_NITMS Unreviewed; 348 AA. AC A9A1R5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Oxidoreductase domain protein {ECO:0000313|EMBL:ABX12036.1}; GN OrderedLocusNames=Nmar_0136 {ECO:0000313|EMBL:ABX12036.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12036.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12036.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12036.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12036.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R5; -. DR STRING; 436308.Nmar_0136; -. DR EnsemblBacteria; ABX12036; ABX12036; Nmar_0136. DR KEGG; nmr:Nmar_0136; -. DR eggNOG; arCOG01622; Archaea. DR eggNOG; COG0673; LUCA. DR OMA; FRHAPEY; -. DR BioCyc; NMAR436308:GI3J-139-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000683; Oxidoreductase_N. DR Pfam; PF01408; GFO_IDH_MocA; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 127 GFO_IDH_MocA. {ECO:0000259|Pfam:PF01408}. SQ SEQUENCE 348 AA; 40323 MW; A7CA65EE158DC77A CRC64; MNDFSKKIKK LTVVVIGCGS IGERHIYNLK NFGVNSLHIV DFDKNKVKKL EAKYNVKGHF STDKSLSVNP DLSIICTDPA SHITLAEKCL KKSSHIFIEK PISHDPNKVK LLLKNADSKK LKIFVGYNFR YNSGLNELKN ILKKQNKSPY LISSNFGHHI KYWHPNSNFK NHYILKKNNG IILDDSHEYD LIKWLLEDKV ESVYCQSIKT PKLSKYSESL ASIVLKFKKG TIANLTLDFL RPSYQRNCKI LFEDKEFNWD FNIKKKNKNY QNIANITITS QKLDTQRKIQ KISEKVNEMY QKEMYDFISS IIKDTKPTID GWDALETLKI GNAALESAKK GKVQYIRY // ID A9A1I8_NITMS Unreviewed; 285 AA. AC A9A1I8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ABX13167.1}; GN OrderedLocusNames=Nmar_1271 {ECO:0000313|EMBL:ABX13167.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13167.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13167.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13167.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13167.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I8; -. DR STRING; 436308.Nmar_1271; -. DR EnsemblBacteria; ABX13167; ABX13167; Nmar_1271. DR KEGG; nmr:Nmar_1271; -. DR eggNOG; arCOG00600; Archaea. DR eggNOG; COG0517; LUCA. DR HOGENOM; HOG000023843; -. DR OMA; GMIIKSD; -. DR BioCyc; NMAR436308:GI3J-1304-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 3. DR SMART; SM00116; CBS; 4. DR PROSITE; PS51371; CBS; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 62 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 73 133 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 137 195 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 229 285 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 285 AA; 31284 MW; A93F4CE9EC1199F3 CRC64; MSELVSISQK PITSDSNESL DKIITKMLKD NISRIVLTQG NSPVGIITEK DIGLFLLTDD TERNLADIPA SQIMNNFTSV NESMSVEKCV ELMLEQNIGS LGVSSSQNEL VGIITKTDIA KYYSQNYVGK HTVGDIMTIS YIAANSDDYL KDVVQKMVEE KISRIFLKNK ENDPEGILTF RDLFHVALEK GNTDAVLDNA DDAISVVFTR KGFLSDSGFG ATTMAKDVMT KSFETIDFEE ELTVACKVMA QNKINGLGVK INGKLGGVLS KTDTLKAIYV DNHSK // ID A9A240_NITMS Unreviewed; 127 AA. AC A9A240; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12453.1}; GN OrderedLocusNames=Nmar_0557 {ECO:0000313|EMBL:ABX12453.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12453.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12453.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12453.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12453.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12453; ABX12453; Nmar_0557. DR KEGG; nmr:Nmar_0557; -. DR eggNOG; arCOG08652; Archaea. DR eggNOG; ENOG4110ZS6; LUCA. DR HOGENOM; HOG000105493; -. DR OMA; KHEYIRE; -. DR BioCyc; NMAR436308:GI3J-579-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 127 AA; 14878 MW; B7687CC1082585A4 CRC64; MDHMDDFEKE FPDFDWKNTP AYKHPGGKDC PCPKHEYIRE QINFTKQVNE KGKEPAKVTL KFCPDHYRVY MDEVIPAMPL KYKILTKIAL KLGAIQVEQL KYMESELCFY CKFGSGGHDK KTELPPM // ID A9A2R5_NITMS Unreviewed; 213 AA. AC A9A2R5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Nitroreductase {ECO:0000313|EMBL:ABX13592.1}; GN OrderedLocusNames=Nmar_1696 {ECO:0000313|EMBL:ABX13592.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13592.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13592.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13592.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13592.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2R5; -. DR STRING; 436308.Nmar_1696; -. DR EnsemblBacteria; ABX13592; ABX13592; Nmar_1696. DR KEGG; nmr:Nmar_1696; -. DR eggNOG; arCOG00288; Archaea. DR eggNOG; COG0778; LUCA. DR HOGENOM; HOG000146739; -. DR OMA; ENIAETF; -. DR BioCyc; NMAR436308:GI3J-1741-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 1. DR SUPFAM; SSF55469; SSF55469; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 20 190 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. SQ SEQUENCE 213 AA; 24270 MW; F6B44882E19EFA85 CRC64; MQKPINVAKL IKIMETFDAI KERRSVKHYD PNHKLSEDEI EKLLSLAVLS PTSFNMQNWR FVLVKDSEIR KQIRSASWDQ AQVTDSSLLL VLCADLKSWK KDPAQYWKDA PKEARDFLVP AMGMFYEGKE QLQRDEAMRS CGIAAQTIML AAKAMGYDSN PMIGFDPEKV AQLINLPKDH VITMMVVIGK QVKPAMPRGG QLPLDKVVFT DRF // ID A9A144_NITMS Unreviewed; 304 AA. AC A9A144; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=PP-loop domain protein {ECO:0000313|EMBL:ABX12005.1}; GN OrderedLocusNames=Nmar_0105 {ECO:0000313|EMBL:ABX12005.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12005.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12005.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12005.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12005.1; -; Genomic_DNA. DR ProteinModelPortal; A9A144; -. DR STRING; 436308.Nmar_0105; -. DR EnsemblBacteria; ABX12005; ABX12005; Nmar_0105. DR KEGG; nmr:Nmar_0105; -. DR eggNOG; arCOG00042; Archaea. DR eggNOG; COG0037; LUCA. DR HOGENOM; HOG000225863; -. DR OMA; LMELECP; -. DR BioCyc; NMAR436308:GI3J-108-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000049; F:tRNA binding; IEA:InterPro. DR GO; GO:0034227; P:tRNA thio-modification; IEA:InterPro. DR GO; GO:0002098; P:tRNA wobble uridine modification; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR012089; 2-thiocytidine_tRNA_synth_TtcA. DR InterPro; IPR000541; Ncs6/Tuc1/Ctu1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR011063; TilS/TtcA_N. DR Pfam; PF01171; ATP_bind_3; 1. DR PIRSF; PIRSF004976; ATPase_YdaO; 1. DR TIGRFAMs; TIGR00269; TIGR00269; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 50 239 ATP_bind_3. {ECO:0000259|Pfam:PF01171}. SQ SEQUENCE 304 AA; 34281 MW; 336B1A35833A03C0 CRC64; MKCDYCENLA VYTRKYSGQK LCSKCFSNSI VRKTAKTISK HNMIKNNELV AVAVSGGKDS LALLKIIHEM ASSHNFRIKT ITIDEGIPGY RNEALEIVEK FCGELGVEHK VYSYKNLFEL TLDEALDLRE NEKTSSCSIC GTLRRRAIDH AAKDVGADVI ATGHNLDDTL QTFVINMLSG DTNKIGWMEP DTSSNSLRKI KPFCEIYESE IVFYAFTNDI PFQSEPCPHM NEGIRTEIRE FLNSLEKQHS GIKNNLYQSI LRVSNIVKET NYKEKTVCKK CGSDCTGNVC SVCNMILKLK ENQT // ID A9A5M9_NITMS Unreviewed; 88 AA. AC A9A5M9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12740.1}; GN OrderedLocusNames=Nmar_0844 {ECO:0000313|EMBL:ABX12740.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12740.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12740.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12740.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12740.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0844; -. DR EnsemblBacteria; ABX12740; ABX12740; Nmar_0844. DR KEGG; nmr:Nmar_0844; -. DR BioCyc; NMAR436308:GI3J-871-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 88 AA; 10104 MW; 863954B5FA5CFAED CRC64; MLTEREIAIY ALGKTEGVHS IAETLGKGLD DEKYIESWNK TMKLLGIELP LKELEKIYKE FAEKMEQIVD ESESKNKDSI GKKTQEIK // ID A9A169_NITMS Unreviewed; 211 AA. AC A9A169; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12355.1}; GN OrderedLocusNames=Nmar_0459 {ECO:0000313|EMBL:ABX12355.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12355.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12355.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12355.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12355.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0459; -. DR EnsemblBacteria; ABX12355; ABX12355; Nmar_0459. DR KEGG; nmr:Nmar_0459; -. DR HOGENOM; HOG000105992; -. DR OMA; GANACKS; -. DR BioCyc; NMAR436308:GI3J-478-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 211 AA; 21822 MW; C54163656F316629 CRC64; MYKIASMGLL GLIAILVIPA GTQSMTNDGF NLYGQATMTY HDANGNEMLS QTVHNQLFDE GEDLLIANAF TGVTDIGTDA TQIGAICLTT ATAAESYAES TSNTTFNTDH DAAEGGADDE ENCKTDGSVD STSQIATIGP LTFTAGTGTG NNLFAGSTVE AIGICDADSS DNDVRDCTTT LFAVVDTSDV TLASGETVDI TYTFNLQSDG T // ID A9A312_NITMS Unreviewed; 330 AA. AC A9A312; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Glycosyl transferase family 4 {ECO:0000313|EMBL:ABX12140.1}; GN OrderedLocusNames=Nmar_0244 {ECO:0000313|EMBL:ABX12140.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12140.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12140.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12140.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12140.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0244; -. DR EnsemblBacteria; ABX12140; ABX12140; Nmar_0244. DR KEGG; nmr:Nmar_0244; -. DR eggNOG; arCOG03199; Archaea. DR eggNOG; COG0472; LUCA. DR HOGENOM; HOG000109841; -. DR KO; K01001; -. DR OMA; RIVEHRQ; -. DR BioCyc; NMAR436308:GI3J-251-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008963; F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity; IEA:InterPro. DR InterPro; IPR000715; Glycosyl_transferase_4. DR PANTHER; PTHR22926; PTHR22926; 1. DR Pfam; PF00953; Glycos_transf_4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12140.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 70 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 76 93 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 100 120 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 126 146 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 158 181 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 187 203 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 235 255 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 307 328 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 330 AA; 35397 MW; 8A3843375887B072 CRC64; MINLVIPAIV SCIIAFFVVF VTTPPLIRFL EKRNMAVKDM NKKENVMVVR PGGPSIILGI IVSEIVLYAF LQLNEIIAIV ITTSAAFAIG YVDDRKVMGG WFKPVALAIA AIPIIVFGAY ETDLAFPLFG DVQIPVLYIG LIILMIPITG NTINSIDVLN GVASGFMVIA SFSLSICLFI IQNYEIAIVS LPLGFVSLAF YKYHKIPSKI FPGDSGALTL GAMYGSIAIV GGVEIIAAVA LLPAVINSFL FLSSVKKIVE HRQVKGKPVE HTEGFKLKAT DDKTAPVTLV RLILAGGPMS EKQVGFAIFK LAVFSGILAV ITAFMMGVSL // ID A9A5L2_NITMS Unreviewed; 182 AA. AC A9A5L2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12723.1}; GN OrderedLocusNames=Nmar_0827 {ECO:0000313|EMBL:ABX12723.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12723.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12723.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12723.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12723.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0827; -. DR EnsemblBacteria; ABX12723; ABX12723; Nmar_0827. DR KEGG; nmr:Nmar_0827; -. DR eggNOG; arCOG08721; Archaea. DR eggNOG; ENOG411100T; LUCA. DR OMA; PSERKIN; -. DR BioCyc; NMAR436308:GI3J-854-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 182 AA; 20872 MW; 093FA09BA37BC89E CRC64; MDEEANPIKD YLFDYIKNSQ TIPQLISQKK FDVVIDEIIE NCYDKIIAMD EKDMAVGILA TGILHYLLTN ALLNSQRKID YQGIELDIVV PDIKTLEKDP KMTLLICIPK SSDKQVIEEK ITQLEKIQPN KENIWVVLSE DMSLDTKSFV LSKERSTFSK IIFEIAQFSN VGGANKFKIL RI // ID A9A316_NITMS Unreviewed; 305 AA. AC A9A316; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 46. DE SubName: Full=Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ABX12144.1}; GN OrderedLocusNames=Nmar_0248 {ECO:0000313|EMBL:ABX12144.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12144.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12144.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12144.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-IV pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU004106}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12144.1; -; Genomic_DNA. DR ProteinModelPortal; A9A316; -. DR STRING; 436308.Nmar_0248; -. DR EnsemblBacteria; ABX12144; ABX12144; Nmar_0248. DR KEGG; nmr:Nmar_0248; -. DR eggNOG; arCOG02297; Archaea. DR eggNOG; COG0115; LUCA. DR HOGENOM; HOG000276706; -. DR KO; K00826; -. DR OMA; TIPMTVE; -. DR BioCyc; NMAR436308:GI3J-255-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004084; F:branched-chain-amino-acid transaminase activity; IEA:InterPro. DR GO; GO:0009081; P:branched-chain amino acid metabolic process; IEA:InterPro. DR InterPro; IPR001544; Aminotrans_IV. DR InterPro; IPR005785; B_amino_transI. DR PANTHER; PTHR11825; PTHR11825; 1. DR Pfam; PF01063; Aminotran_4; 1. DR SUPFAM; SSF56752; SSF56752; 1. DR TIGRFAMs; TIGR01122; ilvE_I; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX12144.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12144.1}. SQ SEQUENCE 305 AA; 34280 MW; 51420D1D225E7465 CRC64; MKLPLSKYVW FDGKYVLTEK AQVPITTHAI HYGTSIFEGI RAYWNGKNLH VFRLDEHVKR FRRSGQFYNI SLNFSDKEIT EAIIGICKKN KIKKSCYIRP FYFVGDYGIN LHVTEKAPTN VAMFTFPFGD LFNKNGISAG IVSWRKFSDM STPPQAKMGG NYLNSIIATQ EAKRNGVDEA ILLDHNGNVS EAPGENIFIV REGQMATPSL ASAALEGITR DAVIKIARDL DIEIVERDIT RSELAMSDEV FLTGTAAEIT PIISLDGKKV SNGKPGDITK KMMEEYTDIV MNKNDDYSHW LTAVY // ID A9A3C5_NITMS Unreviewed; 480 AA. AC A9A3C5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; DE EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571}; DE AltName: Full=Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; GN Name=proS {ECO:0000256|HAMAP-Rule:MF_01571}; GN OrderedLocusNames=Nmar_0658 {ECO:0000313|EMBL:ABX12554.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12554.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12554.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12554.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the attachment of proline to tRNA(Pro) in a CC two-step reaction: proline is first activated by ATP to form Pro- CC AMP and then transferred to the acceptor end of tRNA(Pro). CC {ECO:0000256|HAMAP-Rule:MF_01571}. CC -!- CATALYTIC ACTIVITY: ATP + L-proline + tRNA(Pro) = AMP + CC diphosphate + L-prolyl-tRNA(Pro). {ECO:0000256|HAMAP- CC Rule:MF_01571}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01571}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01571}. CC -!- DOMAIN: Consists of three domains: the N-terminal catalytic CC domain, the anticodon-binding domain and the C-terminal extension. CC {ECO:0000256|HAMAP-Rule:MF_01571}. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. ProS type 3 subfamily. {ECO:0000256|HAMAP-Rule:MF_01571}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12554.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3C5; -. DR STRING; 436308.Nmar_0658; -. DR EnsemblBacteria; ABX12554; ABX12554; Nmar_0658. DR KEGG; nmr:Nmar_0658; -. DR eggNOG; arCOG00402; Archaea. DR eggNOG; COG0442; LUCA. DR HOGENOM; HOG000167538; -. DR KO; K01881; -. DR OMA; VYWGKAY; -. DR BioCyc; NMAR436308:GI3J-683-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004827; F:proline-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006433; P:prolyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.110.30; -; 1. DR Gene3D; 3.40.50.800; -; 1. DR HAMAP; MF_01571; Pro_tRNA_synth_type3; 1. DR InterPro; IPR002314; aa-tRNA-synt_IIb. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004154; Anticodon-bd. DR InterPro; IPR002316; Pro-tRNA-ligase_IIa. DR InterPro; IPR004499; Pro-tRNA-ligase_IIa_arc-type. DR InterPro; IPR016061; Pro-tRNA_ligase_II_C. DR InterPro; IPR017449; Pro-tRNA_synth_II. DR PANTHER; PTHR11451:SF6; PTHR11451:SF6; 1. DR Pfam; PF03129; HGTP_anticodon; 1. DR Pfam; PF09180; ProRS-C_1; 1. DR Pfam; PF00587; tRNA-synt_2b; 1. DR PRINTS; PR01046; TRNASYNTHPRO. DR SMART; SM00946; ProRS-C_1; 1. DR SUPFAM; SSF52954; SSF52954; 1. DR SUPFAM; SSF64586; SSF64586; 1. DR TIGRFAMs; TIGR00408; proS_fam_I; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571, KW ECO:0000313|EMBL:ABX12554.1}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01571}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01571}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_01571, ECO:0000313|EMBL:ABX12554.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01571}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_01571}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 37 285 AA_TRNA_LIGASE_II. FT {ECO:0000259|PROSITE:PS50862}. SQ SEQUENCE 480 AA; 54937 MW; 22B965DD785657B2 CRC64; MSKEDVGITV SKNEDFSEWY TQVVLKAKLA DYAPVKGLIV LRPDGHSIWE SLKNTFDKKF AKNGIRNGFL PVLIPESLLG KEQKHFAGFN PEVFWVTHSG TNEIGDRLAL RPTSETLAYT LYSKWIQSWR DLPLKINFWN TALRAEIKAT KPFLRTSEFL WQEGHTVHIT QEEAEQEVMK ILDIYKNTVE EELAIPVTTG KKSEKEKFVG AVYTTTMESI MPDGKALQMG TSHFLGQNFS KPFEVKFADK DNVEHFAWQT SWGVSWRLIG AMIMAHGDDQ GLVLPPKVAP TQVVIVPIYR NDEGRDKVLP KVKEIQESLE AKDIRVQVDD RQGLSPGYKF NDWEMKGVPI RIEIGPKDIE KQSIVVAKRY NREKTNLQFS EIEKVVEVLD EIQKNMLEKA REQSKENTKY VSDYTEFKLK IEEGGFFNAP WCGKLECEEK IKEETGADIR VIPFGSEDTN SKCMYCGEQS KSIPIFARGY // ID A9A5F5_NITMS Unreviewed; 363 AA. AC A9A5F5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=IMP biosynthesis enzyme PurP domain protein {ECO:0000313|EMBL:ABX12666.1}; GN OrderedLocusNames=Nmar_0770 {ECO:0000313|EMBL:ABX12666.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12666.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12666.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12666.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12666.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5F5; -. DR STRING; 436308.Nmar_0770; -. DR EnsemblBacteria; ABX12666; ABX12666; Nmar_0770. DR KEGG; nmr:Nmar_0770; -. DR eggNOG; arCOG04346; Archaea. DR eggNOG; COG1759; LUCA. DR HOGENOM; HOG000228474; -. DR KO; K06863; -. DR OMA; DWRFETS; -. DR BioCyc; NMAR436308:GI3J-796-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0016879; F:ligase activity, forming carbon-nitrogen bonds; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0006188; P:IMP biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 2. DR Gene3D; 3.40.50.20; -; 1. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR023656; IMP_biosynth_PurP. DR InterPro; IPR009720; IMP_biosynth_PurP_C. DR InterPro; IPR010672; IMP_biosynth_PurP_N. DR InterPro; IPR016185; PreATP-grasp_dom. DR Pfam; PF06849; DUF1246; 1. DR Pfam; PF06973; DUF1297; 1. DR PIRSF; PIRSF004602; ATPgrasp_PurP; 1. DR SUPFAM; SSF52440; SSF52440; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 19 144 DUF1246. {ECO:0000259|Pfam:PF06849}. FT DOMAIN 177 363 DUF1297. {ECO:0000259|Pfam:PF06973}. SQ SEQUENCE 363 AA; 41708 MW; 098121154BE930F5 CRC64; MIKSSEIKKI VNEYSDVRIG VLGSHSALEI MDGAKDEDFQ TRVFCQKGRE GPYQRFNRIA DEITVLNKFK DMASAKIQKE LRESNTIIVP HRSLTVYLGY KTIENSFKVP IFGNRKLFQA EERTAKKGQY YLLEKARIKY PKLFKDPKRI NKPCIVKVQE KNRPLERAFF TVSSYKDYVK TSEEKIKQGV IARKDLEKAS IEELAIGTYM NFNFFHTPIS DQVDFIGIER RLQTNLMDFN ALPAKQQLDI DVDLQNIEVG HTPASIRESL LEKVLKMGDK FVNAVKREYA PGIIGPFSLQ SVITKDLELI VYDVSLRVPG NPIVATTSPY TKYQYGQTFG VGRRIAMEIK RAQEEDRLDE IVT // ID A9A527_NITMS Unreviewed; 64 AA. AC A9A527; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11936.1}; GN OrderedLocusNames=Nmar_0036 {ECO:0000313|EMBL:ABX11936.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11936.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11936.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11936.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11936.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0036; -. DR EnsemblBacteria; ABX11936; ABX11936; Nmar_0036. DR KEGG; nmr:Nmar_0036; -. DR eggNOG; arCOG08815; Archaea. DR eggNOG; ENOG4111146; LUCA. DR HOGENOM; HOG000110531; -. DR OMA; MASKEIC; -. DR BioCyc; NMAR436308:GI3J-36-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 26 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 58 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 64 AA; 6863 MW; A2041E063596624D CRC64; MASKAITVGV GIPMIVVGAL MAWLWAPMEG DLQNQVELIG STIGILGIVF FISGLFYTKE PVMH // ID A9A3V2_NITMS Unreviewed; 91 AA. AC A9A3V2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; DE Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434}; DE EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434}; DE AltName: Full=4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; DE AltName: Full=Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; GN OrderedLocusNames=Nmar_1468 {ECO:0000313|EMBL:ABX13364.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13364.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13364.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13364.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: (6R)-6-(L-erythro-1,2-dihydroxypropyl)- CC 5,6,7,8-tetrahydro-4a-hydroxypterin = (6R)-6-(L-erythro-1,2- CC dihydroxypropyl)-7,8-dihydro-6H-pterin + H(2)O. CC {ECO:0000256|HAMAP-Rule:MF_00434}. CC -!- SIMILARITY: Belongs to the pterin-4-alpha-carbinolamine CC dehydratase family. {ECO:0000256|HAMAP-Rule:MF_00434}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13364.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V2; -. DR STRING; 436308.Nmar_1468; -. DR EnsemblBacteria; ABX13364; ABX13364; Nmar_1468. DR KEGG; nmr:Nmar_1468; -. DR eggNOG; arCOG02939; Archaea. DR eggNOG; COG2154; LUCA. DR HOGENOM; HOG000007680; -. DR KO; K01724; -. DR OMA; WFNVYSR; -. DR BioCyc; NMAR436308:GI3J-1505-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008124; F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006729; P:tetrahydrobiopterin biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.1360.20; -; 1. DR HAMAP; MF_00434; Pterin_4_alpha; 1. DR InterPro; IPR001533; Trans/pterin_deHydtase. DR PANTHER; PTHR12599; PTHR12599; 1. DR Pfam; PF01329; Pterin_4a; 1. DR SUPFAM; SSF55248; SSF55248; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00434}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 91 AA; 10628 MW; 2F45C2E591BB9236 CRC64; MRLSPEEITE ELKNLPGWSV VNEKLHKEIE FESFNQAFGF MTRAAMEIEK MNHHPEWFNV YNRLVIDLMT HDAGGITKND INLARILNSL L // ID A9A2W3_NITMS Unreviewed; 149 AA. AC A9A2W3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13640.1}; GN OrderedLocusNames=Nmar_1744 {ECO:0000313|EMBL:ABX13640.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13640.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13640.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13640.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13640.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1744; -. DR EnsemblBacteria; ABX13640; ABX13640; Nmar_1744. DR KEGG; nmr:Nmar_1744; -. DR eggNOG; arCOG08767; Archaea. DR eggNOG; ENOG411110A; LUCA. DR HOGENOM; HOG000109059; -. DR OMA; AEYNIEL; -. DR BioCyc; NMAR436308:GI3J-1791-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 149 AA; 16533 MW; 5517C4E16426BA24 CRC64; MNSSKKGGLI VLFILGMSIF GYSQYASASQ IGISVTQSEL LSENEKGAEY NIELQFENPS LLILTSGTTE FFVIADEQMV GKGQLEPFTV QPLDSTHVKG IFHTDSDGKD VQSVKITGVT KYDAFFTSID IPFVYYPTEE QAREFIHQD // ID A9A263_NITMS Unreviewed; 102 AA. AC A9A263; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12476.1}; GN OrderedLocusNames=Nmar_0580 {ECO:0000313|EMBL:ABX12476.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12476.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12476.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12476.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12476.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0580; -. DR EnsemblBacteria; ABX12476; ABX12476; Nmar_0580. DR KEGG; nmr:Nmar_0580; -. DR BioCyc; NMAR436308:GI3J-603-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 11 38 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 102 AA; 11874 MW; 6539AC6F075826E4 CRC64; MSADADSQSF KERMVAEIKK IQDELNELKN LKVSISKKPA RKTTKRKTAA KKKTVKRKPV RKTTKRKTAA KKKTVKRKPA RKTTKRKVVR KASKSKKKTR RR // ID A9A265_NITMS Unreviewed; 340 AA. AC A9A265; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; DE EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; DE AltName: Full=AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; DE AltName: Full=AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; DE AltName: Full=Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; GN Name=purM {ECO:0000256|HAMAP-Rule:MF_00741}; GN OrderedLocusNames=Nmar_0582 {ECO:0000313|EMBL:ABX12478.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12478.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12478.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12478.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + 2-(formamido)-N(1)-(5-phospho-D- CC ribosyl)acetamidine = ADP + phosphate + 5-amino-1-(5-phospho-D- CC ribosyl)imidazole. {ECO:0000256|HAMAP-Rule:MF_00741, CC ECO:0000256|RuleBase:RU004370}. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5- CC phospho-D-ribosyl)glycinamide: step 2/2. {ECO:0000256|HAMAP- CC Rule:MF_00741}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00741}. CC -!- SIMILARITY: Belongs to the AIR synthase family. CC {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12478.1; -; Genomic_DNA. DR ProteinModelPortal; A9A265; -. DR STRING; 436308.Nmar_0582; -. DR EnsemblBacteria; ABX12478; ABX12478; Nmar_0582. DR KEGG; nmr:Nmar_0582; -. DR eggNOG; arCOG00639; Archaea. DR eggNOG; COG0150; LUCA. DR HOGENOM; HOG000229091; -. DR KO; K01933; -. DR OMA; NHCVNDI; -. DR BioCyc; NMAR436308:GI3J-605-MONOMER; -. DR UniPathway; UPA00074; UER00129. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004641; F:phosphoribosylformylglycinamidine cyclo-ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.1330.10; -; 1. DR Gene3D; 3.90.650.10; -; 1. DR HAMAP; MF_00741; AIRS; 1. DR InterPro; IPR010918; AIR_synth_C_dom. DR InterPro; IPR016188; PurM-like_N. DR InterPro; IPR004733; PurM_cligase. DR Pfam; PF00586; AIRS; 1. DR Pfam; PF02769; AIRS_C; 1. DR SUPFAM; SSF56042; SSF56042; 1. DR TIGRFAMs; TIGR00878; purM; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00741}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00741}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00741, KW ECO:0000256|RuleBase:RU004370, ECO:0000313|EMBL:ABX12478.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00741}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00741}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 57 163 AIRS. {ECO:0000259|Pfam:PF00586}. FT DOMAIN 175 333 AIRS_C. {ECO:0000259|Pfam:PF02769}. SQ SEQUENCE 340 AA; 36427 MW; 04B4ADC2971865A1 CRC64; MALTYKKAGV DISKIKQSQM AIGKLISSTH KLQKKAKIAH GFGHYAGIVE IPGGKLLATH TDGVGTKVVI ANMMKKYNTI GIDCVAMNVN DIICIGATPI SFVDYIAANK NDVPIFKKIV EGLVKGAKKS AMPIVGGETA IMPDVIEGKG FAFDLAGMVV GLVEKKQMVL GNKIRAGDVI IGANSTGIHS NGYSLARKAL LKKYSVKDKV KGVGTIGDAL LKPTEIYTKP VLEMVEKCKI NGLAHITGGS FTKLLRLKKI GYEIDSLPKI PPIMGLIAEQ GVKSEEMYKT FNMGVGFCVV APKDQATKIK SIFKKYKISS QEIGQIVSKK GVFVNSQKIA // ID A9A4N0_NITMS Unreviewed; 78 AA. AC A9A4N0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13008.1}; GN OrderedLocusNames=Nmar_1112 {ECO:0000313|EMBL:ABX13008.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13008.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13008.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13008.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13008.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1112; -. DR EnsemblBacteria; ABX13008; ABX13008; Nmar_1112. DR KEGG; nmr:Nmar_1112; -. DR eggNOG; arCOG08646; Archaea. DR eggNOG; ENOG41110NT; LUCA. DR HOGENOM; HOG000105299; -. DR OMA; RRICKNE; -. DR BioCyc; NMAR436308:GI3J-1143-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 78 AA; 9306 MW; 3DC44E3C69942655 CRC64; MLEKQFDADV LYNRIVHFYM DKKGYTKEKA NEIAQSVVQK EAQRRICKNE KCKHYSHDHI RNAETCLVAE CDCHKFVK // ID A9A5N2_NITMS Unreviewed; 191 AA. AC A9A5N2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 60. DE RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; DE Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929}; DE EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929}; DE AltName: Full=5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; GN Name=purE {ECO:0000256|HAMAP-Rule:MF_01929}; GN OrderedLocusNames=Nmar_0847 {ECO:0000313|EMBL:ABX12743.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12743.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12743.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12743.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of N5-carboxyaminoimidazole CC ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole CC ribonucleotide (CAIR). {ECO:0000256|HAMAP-Rule:MF_01929}. CC -!- CATALYTIC ACTIVITY: 5-carboxyamino-1-(5-phospho-D- CC ribosyl)imidazole = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4- CC carboxylate. {ECO:0000256|HAMAP-Rule:MF_01929}. CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5- CC amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 2/2. CC {ECO:0000256|HAMAP-Rule:MF_01929}. CC -!- SIMILARITY: Belongs to the AIR carboxylase family. Class I CC subfamily. {ECO:0000256|HAMAP-Rule:MF_01929}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12743.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N2; -. DR STRING; 436308.Nmar_0847; -. DR EnsemblBacteria; ABX12743; ABX12743; Nmar_0847. DR KEGG; nmr:Nmar_0847; -. DR eggNOG; arCOG02464; Archaea. DR eggNOG; COG0041; LUCA. DR HOGENOM; HOG000034141; -. DR KO; K01588; -. DR OMA; SDWATMR; -. DR BioCyc; NMAR436308:GI3J-874-MONOMER; -. DR UniPathway; UPA00074; UER00943. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0034023; F:5-(carboxyamino)imidazole ribonucleotide mutase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.7700; -; 1. DR HAMAP; MF_01929; PurE_classI; 1. DR InterPro; IPR024694; N5-CAIR_mutase_PurE. DR InterPro; IPR000031; PurE_dom. DR Pfam; PF00731; AIRC; 1. DR PIRSF; PIRSF001338; AIR_carboxylase; 1. DR SMART; SM01001; AIRC; 1. DR SUPFAM; SSF52255; SSF52255; 1. DR TIGRFAMs; TIGR01162; purE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000256|HAMAP-Rule:MF_01929}; KW Lyase {ECO:0000313|EMBL:ABX12743.1}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01929}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 170 AIRC. {ECO:0000259|SMART:SM01001}. FT BINDING 15 15 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01929, FT ECO:0000256|PIRSR:PIRSR001338-1}. FT BINDING 18 18 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01929, FT ECO:0000256|PIRSR:PIRSR001338-1}. FT BINDING 45 45 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_01929, FT ECO:0000256|PIRSR:PIRSR001338-1}. SQ SEQUENCE 191 AA; 20697 MW; C77F6396D56AF899 CRC64; MTYSKKPLVG IIMGSSSDSR IMKGAAEILD DFKVKHEDQI ISAHRTPARL AEYAQHAEKM GFDIIIAGAG GAAHLPGMIA SHTVIPVIGV PILVYNDKHH KKTDTEKFSA FGGLDSLLSI TEMPSGSPVV AVGVNKAGNA GIYAMKILAN KFPELKKKLK QHKSNQHESV VKESEMMKKQ GLSSFAKKKF K // ID A9A2Q1_NITMS Unreviewed; 109 AA. AC A9A2Q1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13578.1}; GN OrderedLocusNames=Nmar_1682 {ECO:0000313|EMBL:ABX13578.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13578.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13578.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13578.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13578.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13578; ABX13578; Nmar_1682. DR KEGG; nmr:Nmar_1682; -. DR eggNOG; arCOG07820; Archaea. DR eggNOG; COG1742; LUCA. DR HOGENOM; HOG000223633; -. DR KO; K09771; -. DR OMA; TPDLYDW; -. DR BioCyc; NMAR436308:GI3J-1727-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR HAMAP; MF_00010; UPF0060; 1. DR InterPro; IPR003844; UPF0060. DR Pfam; PF02694; UPF0060; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 81 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 88 107 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 109 AA; 12200 MW; 4117E4E5E18A80B9 CRC64; MVEVASTVGV FFFAALLEIG GGYLVWKWLR DHKGKVLGLI GGLVLFSYGI VMTLQPADFG KVYATYGGIF VVSSIIWGYW VDKKRPDRYE VIGSVVVLIG VTIMFYWPR // ID A9A5V9_NITMS Unreviewed; 359 AA. AC A9A5V9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13114.1}; GN OrderedLocusNames=Nmar_1218 {ECO:0000313|EMBL:ABX13114.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13114.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13114.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13114.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13114.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1218; -. DR EnsemblBacteria; ABX13114; ABX13114; Nmar_1218. DR KEGG; nmr:Nmar_1218; -. DR BioCyc; NMAR436308:GI3J-1251-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 359 AA; 42876 MW; 28C1532802342BE2 CRC64; MISTDNLISE LNIVKRSSRK TLLPKEEDIV EEAILNTLSR EGTLSLTKLV KTIENYGDWE AKRNSIKRRI DGQEKYLSLL DYEFIKERKP EKRRPGKYGK EYCLTTKGFL ASLATKHISF DRTYLFKKYI TFLDNYLDDK IKNVGEEAGF DSTLDIETKN MLLDVITNYI KSQITVFLIW HEANETSIRM RKSMKEYIED FILTHSEYIH QEFPMMLDKK REEEYRQALR KYFEYSKILH SLMESPVEDI HSKKINIKLN MISSFVFKWH LYFDELQMKN PIGNDYDIWN THAGVLSRPE YGIDIEYEGT FGHKRKIQPD LKSETEKKIQ QILKKKIPIT DIWRKRMRRE EIGNDWLYA // ID A9A2U6_NITMS Unreviewed; 646 AA. AC A9A2U6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Beta-lactamase domain protein {ECO:0000313|EMBL:ABX13623.1}; GN OrderedLocusNames=Nmar_1727 {ECO:0000313|EMBL:ABX13623.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13623.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13623.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13623.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13623.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U6; -. DR STRING; 436308.Nmar_1727; -. DR EnsemblBacteria; ABX13623; ABX13623; Nmar_1727. DR KEGG; nmr:Nmar_1727; -. DR eggNOG; arCOG00543; Archaea. DR eggNOG; COG1782; LUCA. DR HOGENOM; HOG000223261; -. DR KO; K07041; -. DR OMA; IVHLHIG; -. DR BioCyc; NMAR436308:GI3J-1772-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.60.15.10; -; 1. DR InterPro; IPR022712; Beta_Casp. DR InterPro; IPR019975; KH-dom/beta-lactamase-dom_arc. DR InterPro; IPR001279; Metallo-B-lactamas. DR InterPro; IPR011108; RMMBL. DR Pfam; PF10996; Beta-Casp; 1. DR Pfam; PF16661; Lactamase_B_6; 1. DR Pfam; PF07521; RMMBL; 1. DR SMART; SM01027; Beta-Casp; 1. DR SMART; SM00849; Lactamase_B; 1. DR SUPFAM; SSF56281; SSF56281; 1. DR TIGRFAMs; TIGR03675; arCOG00543; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 201 399 Lactamase_B. {ECO:0000259|SMART:SM00849}. FT DOMAIN 430 555 Beta-Casp. {ECO:0000259|SMART:SM01027}. SQ SEQUENCE 646 AA; 72347 MW; 67199024218530B9 CRC64; MQRKQQQKEL PPSSQNIMAT ILQSIPKEAN VTKIEYEGPR IALYTNAPRY LMENNETISN LVSVIKKRIV VRTDESIRKP EDDARKIIAS LVPEDAKLQN TLFDTATGEV SIEAKRPWLL QRNAKEFNHA EVTEKTGWKI RVRKATTVPS RTIQTINATL KQASTERSKQ LKQVGDEIFR PRLTQRTEVS LYTLGGFGQV GRSSLLLSTP ESKILIDCGI NPGARSPMDA FPRLDSLNLT LDDLDAVVIG HAHLDHTGFL PTLCKYGYKG PIYCTEPTLP MMNLIQLDAI KVAAAQGRTP IYSERDVKQI MRQTITLPYG TVTDISPDIK LVLANAGHIL GSALCHFHIG NGDHNFVYSG DIKFGKSILF EAASWNFPRV ETLLIESTYG LKEDIQPSRQ EVESAFINAV NNTLADGGKV LIPIPAVGRA QEIMMVIDHY MKSGEMIEAP VFTEGMISEA SAIHESYPEY LARELKQKIL ETDDNPFDSE YFTNIEHADA REEPMREDSP CIILATSGML EGGPVLEYFK NIAPDKKSKV LFVSYQVNGT LGRRVLDGSK QATMLGKDGK VEVVTINCGV EKLDGFSGHS DYNQLMSFVQ RLRPKLRRVL VNHGERKKSE NLAMNIRRMH RVPAHYPQIQ EAIKLF // ID A9A183_NITMS Unreviewed; 105 AA. AC A9A183; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12369.1}; GN OrderedLocusNames=Nmar_0473 {ECO:0000313|EMBL:ABX12369.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12369.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12369.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12369.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12369.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12369; ABX12369; Nmar_0473. DR KEGG; nmr:Nmar_0473; -. DR eggNOG; arCOG07802; Archaea. DR eggNOG; ENOG410YQSP; LUCA. DR HOGENOM; HOG000108047; -. DR OMA; FQNAVAD; -. DR BioCyc; NMAR436308:GI3J-493-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR004378; NitroRdtase/quinone_Rdtas. DR Pfam; PF04075; DUF385; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 105 AA; 12168 MW; 94110F81AA83BF15 CRC64; MKISEELFRP ILVTKGRKTG KEHSVMLRAV NHNGKIYFSR HRPDGDWFQN AIINSQVKVQ YNGTVFTGHA KLVEDEELNK KISELKYPGE ERAKEKRVTI EVTLD // ID A9A1F6_NITMS Unreviewed; 318 AA. AC A9A1F6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 51. DE RecName: Full=Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; DE EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568}; GN Name=nadA {ECO:0000256|HAMAP-Rule:MF_00568}; GN OrderedLocusNames=Nmar_1239 {ECO:0000313|EMBL:ABX13135.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13135.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13135.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13135.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the condensation of iminoaspartate with CC dihydroxyacetone phosphate to form quinolinate. CC {ECO:0000256|HAMAP-Rule:MF_00568}. CC -!- CATALYTIC ACTIVITY: Glycerone phosphate + iminosuccinate = CC pyridine-2,3-dicarboxylate + 2 H(2)O + phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00568}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00568}; CC Note=Binds 1 [4Fe-4S] cluster per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00568}; CC -!- PATHWAY: Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate CC from iminoaspartate: step 1/1. {ECO:0000256|HAMAP-Rule:MF_00568}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00568}. CC -!- SIMILARITY: Belongs to the quinolinate synthase A family. Type 2 CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00568}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13135.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1239; -. DR EnsemblBacteria; ABX13135; ABX13135; Nmar_1239. DR KEGG; nmr:Nmar_1239; -. DR eggNOG; arCOG04459; Archaea. DR eggNOG; COG0379; LUCA. DR HOGENOM; HOG000222770; -. DR KO; K03517; -. DR OMA; IAHPECE; -. DR BioCyc; NMAR436308:GI3J-1272-MONOMER; -. DR UniPathway; UPA00253; UER00327. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0008987; F:quinolinate synthetase A activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:InterPro. DR GO; GO:0009435; P:NAD biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00568; NadA_type2; 1. DR InterPro; IPR003473; NadA. DR InterPro; IPR023066; Quinolinate_synth_type2. DR Pfam; PF02445; NadA; 1. DR TIGRFAMs; TIGR00550; nadA; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00568}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00568}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00568}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00568}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00568}; KW Methyltransferase {ECO:0000313|EMBL:ABX13135.1}; KW Pyridine nucleotide biosynthesis {ECO:0000256|HAMAP-Rule:MF_00568}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13135.1}. FT BINDING 27 27 Iminoaspartate. {ECO:0000256|HAMAP- FT Rule:MF_00568}. FT BINDING 44 44 Iminoaspartate; via amide nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_00568}. FT BINDING 115 115 Iminoaspartate. {ECO:0000256|HAMAP- FT Rule:MF_00568}. FT BINDING 132 132 Iminoaspartate. {ECO:0000256|HAMAP- FT Rule:MF_00568}. FT BINDING 202 202 Iminoaspartate. {ECO:0000256|HAMAP- FT Rule:MF_00568}. FT BINDING 230 230 Iminoaspartate. {ECO:0000256|HAMAP- FT Rule:MF_00568}. SQ SEQUENCE 318 AA; 35379 MW; 2C673DD4CBEE7EC6 CRC64; MLVQQTSKLK EEIERLKKEK DVVILAHNYQ IPEVQDVADF TGDSLGLSRQ AAKVPQKTIL FCGVNFMAET AAIISPQKKV ILPDLEAGCS LSDSITVDEL RNWKKQHPGA IAVGYVNTTA EIKAELDYCC TSSNAVNVVK AIPEDKEILF LPDMFLGSYV AKMTGRKNMH IWAGECHVHA GITPEDVTKK LDSMKDAEFV IHPECSCTTP MMYDVADGSF DNQKVSILST EGMLNHVKES KAKNFVVATE TGILYRMRQQ NPDKKFIPAS EKAECQYMKM ITLEKVHDAL VNEKNIVTVP KDIADKARLA IDRMLAIS // ID A9A1Y8_NITMS Unreviewed; 104 AA. AC A9A1Y8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12401.1}; GN OrderedLocusNames=Nmar_0505 {ECO:0000313|EMBL:ABX12401.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12401.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12401.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12401.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12401.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Y8; -. DR STRING; 436308.Nmar_0505; -. DR EnsemblBacteria; ABX12401; ABX12401; Nmar_0505. DR KEGG; nmr:Nmar_0505; -. DR eggNOG; arCOG01510; Archaea. DR eggNOG; COG1599; LUCA. DR HOGENOM; HOG000108892; -. DR KO; K07466; -. DR OMA; TNTEDAK; -. DR BioCyc; NMAR436308:GI3J-525-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.40.50.140; -; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR SUPFAM; SSF50249; SSF50249; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 104 AA; 11205 MW; 1E6B6660CCA1824A CRC64; MAEFIPISQV KKMRSGINAK AEVKSKGDPR TVNLKSGGTV DVCDAVIADG ETEDDQMKLT LWGDDIKAVN VGDVVVITNG YTNEFKGEVS LTKGKFGQME VNPQ // ID A9A226_NITMS Unreviewed; 442 AA. AC A9A226; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 55. DE RecName: Full=Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; DE EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089}; DE AltName: Full=Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; DE AltName: Full=Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; GN Name=thiC {ECO:0000256|HAMAP-Rule:MF_00089}; GN OrderedLocusNames=Nmar_0543 {ECO:0000313|EMBL:ABX12439.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12439.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12439.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12439.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the synthesis of the hydroxymethylpyrimidine CC phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide CC (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent CC reaction. {ECO:0000256|HAMAP-Rule:MF_00089}. CC -!- CATALYTIC ACTIVITY: 5-amino-1-(5-phospho-D-ribosyl)imidazole + S- CC adenosyl-L-methionine = 4-amino-2-methyl-5- CC (phosphomethyl)pyrimidine + 5'-deoxyadenosine + L-methionine + CC formate + CO. {ECO:0000256|HAMAP-Rule:MF_00089}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00089}; CC Note=Binds 1 [4Fe-4S] cluster per subunit. The cluster is CC coordinated with 3 cysteines and an exchangeable S-adenosyl-L- CC methionine. {ECO:0000256|HAMAP-Rule:MF_00089}; CC -!- PATHWAY: Cofactor biosynthesis; thiamine diphosphate biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00089}. CC -!- SIMILARITY: Belongs to the ThiC family. {ECO:0000256|HAMAP- CC Rule:MF_00089}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12439.1; -; Genomic_DNA. DR ProteinModelPortal; A9A226; -. DR STRING; 436308.Nmar_0543; -. DR EnsemblBacteria; ABX12439; ABX12439; Nmar_0543. DR KEGG; nmr:Nmar_0543; -. DR eggNOG; arCOG02741; Archaea. DR eggNOG; COG0422; LUCA. DR HOGENOM; HOG000224483; -. DR KO; K03147; -. DR OMA; HIIEKHC; -. DR BioCyc; NMAR436308:GI3J-565-MONOMER; -. DR UniPathway; UPA00060; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009229; P:thiamine diphosphate biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00089; ThiC; 1. DR InterPro; IPR002817; ThiC. DR Pfam; PF01964; ThiC_Rad_SAM; 1. DR TIGRFAMs; TIGR00190; thiC; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00089}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00089}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00089}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00089}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00089}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00089}; KW Thiamine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00089}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00089}. FT REGION 187 189 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00089}. FT REGION 228 231 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00089}. FT METAL 271 271 Zinc. {ECO:0000256|HAMAP-Rule:MF_00089}. FT METAL 335 335 Zinc. {ECO:0000256|HAMAP-Rule:MF_00089}. FT METAL 413 413 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00089}. FT METAL 416 416 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00089}. FT METAL 420 420 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00089}. FT BINDING 68 68 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00089}. FT BINDING 97 97 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00089}. FT BINDING 126 126 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00089}. FT BINDING 165 165 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00089}. FT BINDING 267 267 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00089}. FT BINDING 294 294 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00089}. SQ SEQUENCE 442 AA; 48737 MW; 9A9DBA8466B1797D CRC64; MATQMTAARR GVATDEMKQV AKDEDVTLDW LIPKIAKGSI IIPSNNCRPQ KIHNVGIGKG LKTKVNVNIG TSTLNVNLEE EIEKAKVAVK YHADTMMDLS DGGDVKHIRK TLLETAPITF GTVPIYEAYN YGVEVHKNPL NLTEDDYLNA FENNAKDGVD YTTIHCGITK DIAKRILKVQ RYGGVVSKGG TITAAWMLKH DKENPYLTHY DYLVEMAKKY DVTFSLGDAL RPGSILDSHD ELQVQEMINI SQLTKRAHEQ DVQVMVEGPG HVPLNEVAAN VRLAKSLIGD VPYYVLGPLV TDVASGHDHI ASAIGAAVSA SEGVDLLCYL TPSEHLALPN AEEVKAGLIA YRIAAHAGDL VKIRDKAIKW DMEMTEARRT LDWEKQLALS IDPEEAAKIH SRTGQHPGNN VPCTMCGGAC VYMMLPQQKK YEKENENLQQ IE // ID A9A4U8_NITMS Unreviewed; 89 AA. AC A9A4U8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13402.1}; GN OrderedLocusNames=Nmar_1506 {ECO:0000313|EMBL:ABX13402.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13402.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13402.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13402.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13402.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1506; -. DR EnsemblBacteria; ABX13402; ABX13402; Nmar_1506. DR KEGG; nmr:Nmar_1506; -. DR eggNOG; arCOG08672; Archaea. DR eggNOG; ENOG411114G; LUCA. DR HOGENOM; HOG000106149; -. DR OMA; YDPLFYD; -. DR BioCyc; NMAR436308:GI3J-1548-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 52 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 89 AA; 10482 MW; 7F17FCB5E1266E30 CRC64; MTPIVGTFLS ILSSLTGQLG PNYDPLFYDV MIYIFGTMMF TVFLLGIISF WLRVHGWAYK DNRERWVDEL DRHFEREGIG LIPDNGKYW // ID A9A530_NITMS Unreviewed; 105 AA. AC A9A530; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11939.1}; GN OrderedLocusNames=Nmar_0039 {ECO:0000313|EMBL:ABX11939.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11939.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11939.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11939.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11939.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0039; -. DR EnsemblBacteria; ABX11939; ABX11939; Nmar_0039. DR KEGG; nmr:Nmar_0039; -. DR eggNOG; arCOG08816; Archaea. DR eggNOG; ENOG41111F8; LUCA. DR OMA; WYAIEFA; -. DR BioCyc; NMAR436308:GI3J-39-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 62 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 74 95 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 105 AA; 12598 MW; 3ACE9017B39B0148 CRC64; MLQILHIRYS KIKYRFYFKK LMDDGRKIAY IPKEGWPKFT WYAIEFAIVL AVCMLIAREV VATLSELSPD LQNYIWWGIT GLIFLAWYIG IRGFILKKKI LNNRY // ID A9A3L7_NITMS Unreviewed; 154 AA. AC A9A3L7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Iron (Metal) dependent repressor, DtxR family {ECO:0000313|EMBL:ABX12949.1}; GN OrderedLocusNames=Nmar_1053 {ECO:0000313|EMBL:ABX12949.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12949.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12949.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12949.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12949.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3L7; -. DR STRING; 436308.Nmar_1053; -. DR EnsemblBacteria; ABX12949; ABX12949; Nmar_1053. DR KEGG; nmr:Nmar_1053; -. DR eggNOG; arCOG02100; Archaea. DR eggNOG; COG1321; LUCA. DR HOGENOM; HOG000040349; -. DR OMA; LATSRPY; -. DR BioCyc; NMAR436308:GI3J-1084-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0046914; F:transition metal ion binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 1.10.60.10; -; 1. DR InterPro; IPR001367; Fe_dep_repressor. DR InterPro; IPR022687; HTH_DTXR. DR InterPro; IPR022689; Iron_dep_repressor. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02742; Fe_dep_repr_C; 1. DR Pfam; PF01325; Fe_dep_repress; 1. DR SMART; SM00529; HTH_DTXR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF47979; SSF47979; 1. DR PROSITE; PS50944; HTH_DTXR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 23 84 HTH dtxR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50944}. SQ SEQUENCE 154 AA; 17703 MW; F54ED0CB4B5945B9 CRC64; MKTKNSKRLD SIKAAHQSER ARSSTRMEDY LEIISELVEL KGYATTLDIS RYMNVSAPSV TKMLQRLDEG GYLEYEKYHG INLTKKGIEV ADGIRQKHGI LLEFFEILGI GYDTANQDTE GIEHHLNPKT IKQLRKFITF LKANPKIIEN FKNL // ID A9A570_NITMS Unreviewed; 169 AA. AC A9A570; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12269.1}; GN OrderedLocusNames=Nmar_0373 {ECO:0000313|EMBL:ABX12269.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12269.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12269.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12269.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12269.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0373; -. DR EnsemblBacteria; ABX12269; ABX12269; Nmar_0373. DR KEGG; nmr:Nmar_0373; -. DR eggNOG; arCOG08745; Archaea. DR eggNOG; ENOG411110B; LUCA. DR HOGENOM; HOG000108324; -. DR OMA; VIWINEN; -. DR BioCyc; NMAR436308:GI3J-389-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 169 AA; 19065 MW; 77F318EF7138E940 CRC64; MFGRKPQLKE GVHVFSVRDN GDFKDFIFAT VTGVEGRKVG VSGVLVNPVG LKNKIEQGKT GERSLEILKN PTPDNVVLAL VYRVEHENFA DVLDLDQDKC DLIPPKVYTM LDGWIRESLP EFINTVLSLP PGAERDEAKR VLKNRMDTLI DKNLKRTLYS VCRSLKILN // ID A9A320_NITMS Unreviewed; 201 AA. AC A9A320; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12148.1}; GN OrderedLocusNames=Nmar_0252 {ECO:0000313|EMBL:ABX12148.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12148.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12148.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12148.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12148.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12148; ABX12148; Nmar_0252. DR KEGG; nmr:Nmar_0252; -. DR eggNOG; arCOG00972; Archaea. DR eggNOG; COG1056; LUCA. DR OMA; GMKFPKE; -. DR BioCyc; NMAR436308:GI3J-259-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 201 AA; 23070 MW; 52F1D08BD51C26D7 CRC64; MITALYLAHL NPVTKAHVEI IEELKKDADV VKVMPVVFKN NEKEINSKSF PFSFEVRKKM LESEFGDSIE ITEDYAFFAP FKKYIPPLLS PKSWKLRKQV LRGVKGDYFS YTGDKAEGLM LKIYRLNPKI GERKSLSASS VKEKLYDAVS GNNTSWKDDV TENVAKIIEE NWKTVEEFAN VEDTTRRVAG MKFPKEGWST D // ID A9A627_NITMS Unreviewed; 99 AA. AC A9A627; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13505.1}; GN OrderedLocusNames=Nmar_1609 {ECO:0000313|EMBL:ABX13505.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13505.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13505.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13505.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13505.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1609; -. DR EnsemblBacteria; ABX13505; ABX13505; Nmar_1609. DR KEGG; nmr:Nmar_1609; -. DR eggNOG; arCOG10595; Archaea. DR eggNOG; ENOG41111HR; LUCA. DR BioCyc; NMAR436308:GI3J-1653-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 99 AA; 11239 MW; 5C08042F1C583B0A CRC64; MADSIFGQVV AVRKFANGDI ELDFYHDDVV TEYRYSSDPS RLGNFPKELA ETLASTLSTD ICIEIFFGDD GTPTHIELEE CDDEEDDEEF DEDFVPEES // ID A9A356_NITMS Unreviewed; 122 AA. AC A9A356; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12485.1}; GN OrderedLocusNames=Nmar_0589 {ECO:0000313|EMBL:ABX12485.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12485.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12485.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12485.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12485.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0589; -. DR EnsemblBacteria; ABX12485; ABX12485; Nmar_0589. DR KEGG; nmr:Nmar_0589; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000023857; -. DR OMA; NGTEEYL; -. DR BioCyc; NMAR436308:GI3J-612-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 122 AA; 13542 MW; 5725153BF0F538CD CRC64; MGNNYDELTQ KILALDPQVR FAGVANNKGE LVAGGQKDDV EKLLAEDDVK MSIHYALQKR DLYTNLAYRI GNETSSITEY EKVTMITIPI SSSELFLVST EPRADYLKII DAVRSELGLS GD // ID A9A424_NITMS Unreviewed; 326 AA. AC A9A424; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 51. DE SubName: Full=Polyprenyl synthetase {ECO:0000313|EMBL:ABX12208.1}; GN OrderedLocusNames=Nmar_0312 {ECO:0000313|EMBL:ABX12208.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12208.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12208.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12208.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the FPP/GGPP synthase family. CC {ECO:0000256|RuleBase:RU004466}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12208.1; -; Genomic_DNA. DR ProteinModelPortal; A9A424; -. DR STRING; 436308.Nmar_0312; -. DR EnsemblBacteria; ABX12208; ABX12208; Nmar_0312. DR KEGG; nmr:Nmar_0312; -. DR eggNOG; arCOG01726; Archaea. DR eggNOG; COG0142; LUCA. DR HOGENOM; HOG000009101; -. DR KO; K13787; -. DR OMA; TRANDVF; -. DR BioCyc; NMAR436308:GI3J-326-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0008299; P:isoprenoid biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.600.10; -; 1. DR InterPro; IPR008949; Isoprenoid_synthase_dom. DR InterPro; IPR000092; Polyprenyl_synt. DR InterPro; IPR017446; Polyprenyl_synth-rel. DR PANTHER; PTHR12001; PTHR12001; 1. DR Pfam; PF00348; polyprenyl_synt; 1. DR SUPFAM; SSF48576; SSF48576; 1. DR PROSITE; PS00444; POLYPRENYL_SYNTHASE_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU004466}. SQ SEQUENCE 326 AA; 35647 MW; AE8C9E74C1A376B7 CRC64; MKKTKQIEKN AKTVNKYLKS KLKGNPKKLY DAAGHLIVHG GKRLRPYMVI RSCQILGGKS SNAMPAASAV EMVHNFTLVH DDIMDNDEMR HGVPTTHRKY GMPIAILAGD VLFSKAYQVI SDTKLSPTAT THLISRLAKA CVDVCEGQLL DVKMAEEKKI PTQSQYITMI GKKTAALFDV SCAMGAICAT NKGKDISNLS SFGRNLGIAF QITDDLIGVM GDPKITKKPV GNDLREGKKS LPILMAIKLA KGKDKKIILK AFGNSKISRN DLNKAVDVIR SLGIEDSVRR QALKYAEKAE KSLSKYSGSA KTELIALLDF VVKRSV // ID A9A5S6_NITMS Unreviewed; 231 AA. AC A9A5S6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13081.1}; GN OrderedLocusNames=Nmar_1185 {ECO:0000313|EMBL:ABX13081.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13081.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13081.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13081.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13081.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1185; -. DR EnsemblBacteria; ABX13081; ABX13081; Nmar_1185. DR KEGG; nmr:Nmar_1185; -. DR eggNOG; arCOG08689; Archaea. DR eggNOG; ENOG41110SM; LUCA. DR OMA; NCINEAK; -. DR BioCyc; NMAR436308:GI3J-1218-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 9 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 231 AA; 26565 MW; 8CB7B73B7DCB034C CRC64; MKKKKIQNII IGIVAISIIG AIAGYNYSAD QTKQTGLQFG KELEQIQNDV TELQSKFYSE KIKWEEGDVT KDELLEFYGT HLEEFNEIIS KYDELTPPKG FGFESSIDLL KLSSETQLAS DSQFIEWMKT GDESAKVRSD TLIQESFNYE LQGLVEYFSA KTGIKTYDEE LKFEAPQSGL TQKVIQVAEN MANKCDEKFK NESEEFDSDE IEVEWFNCIN EAKKWKIEHL P // ID A9A5A5_NITMS Unreviewed; 160 AA. AC A9A5A5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Secreted protein {ECO:0000313|EMBL:ABX12304.1}; GN OrderedLocusNames=Nmar_0408 {ECO:0000313|EMBL:ABX12304.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12304.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12304.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12304.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12304.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12304; ABX12304; Nmar_0408. DR KEGG; nmr:Nmar_0408; -. DR eggNOG; arCOG08670; Archaea. DR eggNOG; ENOG4111Q03; LUCA. DR HOGENOM; HOG000221600; -. DR OMA; YFTESSI; -. DR BioCyc; NMAR436308:GI3J-426-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR019545; DM13_domain. DR Pfam; PF10517; DM13; 1. DR PROSITE; PS51549; DM13; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 60 160 DM13. {ECO:0000259|PROSITE:PS51549}. SQ SEQUENCE 160 AA; 17395 MW; 9593472479100EB3 CRC64; MNKYLIPIIA IAIVGSVSAF AISPYFTESS IDEALPTGAV VQPMMEETMM EKMTPVSYSG TFIGVGDGIH DAQGDAYTIP LEDGSDVLRL ENFQSTNGPD LYVYLATDDD ASEFINLGEL KANKGNQNYE IPDDADLTKY NKVLIWCQAF SVLFGSAELS // ID A9A5K3_NITMS Unreviewed; 244 AA. AC A9A5K3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:ABX12714.1}; GN OrderedLocusNames=Nmar_0818 {ECO:0000313|EMBL:ABX12714.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12714.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12714.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12714.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12714.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0818; -. DR EnsemblBacteria; ABX12714; ABX12714; Nmar_0818. DR KEGG; nmr:Nmar_0818; -. DR eggNOG; arCOG02398; Archaea. DR eggNOG; COG0785; LUCA. DR HOGENOM; HOG000097105; -. DR KO; K06196; -. DR OMA; FRFSFLY; -. DR BioCyc; NMAR436308:GI3J-845-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0017004; P:cytochrome complex assembly; IEA:InterPro. DR GO; GO:0055114; P:oxidation-reduction process; IEA:InterPro. DR InterPro; IPR003834; Cyt_c_assmbl_TM_dom. DR Pfam; PF02683; DsbD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 33 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 57 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 113 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 163 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 169 190 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 232 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 11 225 DsbD. {ECO:0000259|Pfam:PF02683}. SQ SEQUENCE 244 AA; 26476 MW; E100C644D0A3AAFF CRC64; MAEITLAIAA LAGLGSFVAP CILPMIPAFL AYISGTTLSE LNQNGNQTTK VISRSNIIFN TIFFVLGFTT VFAIYSVIIN SIFSNVGEEF TSTFNMIGGT IIISFGVFLM LSIKIRKLNV ERKIIPKGMK VSYPFSFIFG LAFAAAWTPC VGPVLGTILT LAAATPAHAL NIMLMYSLGL GIPFILMGVF LSRGTRLIKK MNKHLKYYNI ILGGFIIVLG VLVFTNQLAY IANFPLLNEL VLLG // ID A9A128_NITMS Unreviewed; 466 AA. AC A9A128; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=Nucleic acid binding OB-fold tRNA/helicase-type {ECO:0000313|EMBL:ABX11989.1}; GN OrderedLocusNames=Nmar_0089 {ECO:0000313|EMBL:ABX11989.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11989.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11989.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11989.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11989.1; -; Genomic_DNA. DR ProteinModelPortal; A9A128; -. DR STRING; 436308.Nmar_0089; -. DR EnsemblBacteria; ABX11989; ABX11989; Nmar_0089. DR KEGG; nmr:Nmar_0089; -. DR eggNOG; arCOG01510; Archaea. DR eggNOG; COG1599; LUCA. DR HOGENOM; HOG000110765; -. DR KO; K07466; -. DR OMA; ECMPSKV; -. DR BioCyc; NMAR436308:GI3J-90-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR Gene3D; 2.40.50.140; -; 3. DR InterPro; IPR012340; NA-bd_OB-fold. DR SUPFAM; SSF50249; SSF50249; 3. PE 4: Predicted; KW ATP-binding {ECO:0000313|EMBL:ABX11989.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Helicase {ECO:0000313|EMBL:ABX11989.1}; KW Hydrolase {ECO:0000313|EMBL:ABX11989.1}; KW Nucleotide-binding {ECO:0000313|EMBL:ABX11989.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 466 AA; 51051 MW; FDE5EEFDF68823D3 CRC64; MSEFDSLVEK LIEQKPELTK EIIEEQIKLK KEKIGAGYLT DQGALFLIAS DYGVTLSGPL KVEMSLKDLY AGAKEISLET RVLNLSPAKQ FSRKDGSPFY LRTMTVYDDA NSTASVKLWD DKANLPGIEN LKPGDLIKII KAYVKSDLDG SPTINIGSGS NVEATDSTSE IPTIDTITKD VSELQEGQKD LVVLGEIDGV ISGMEFTNSR GMPGKALRMR LKGKDGSGMR VVLWGKDESS IPNMISQSAK VRLLGVKVKS GNQGLEIHGN DATIIEIEGG KEAEPVIARI LSMSPTENGR NMILAVDNQR NLYNINDSSN STSICVEGDV IECMPSKVYG NSITLDENSF VRKLDSDESI PSLSQIRTKI NDVKVDGNYC IEAIILKVPE RREVQTKTGE SIALSEMFVE DDTGQIWVKG WRNQARLIDK CELGEIVSIT GLNAKAGLEG RIEMFLTAFS KITKKN // ID A9A2S8_NITMS Unreviewed; 514 AA. AC A9A2S8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=ABC-1 domain protein {ECO:0000313|EMBL:ABX13605.1}; GN OrderedLocusNames=Nmar_1709 {ECO:0000313|EMBL:ABX13605.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13605.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13605.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13605.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13605.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2S8; -. DR STRING; 436308.Nmar_1709; -. DR EnsemblBacteria; ABX13605; ABX13605; Nmar_1709. DR KEGG; nmr:Nmar_1709; -. DR eggNOG; arCOG01189; Archaea. DR eggNOG; COG0661; LUCA. DR HOGENOM; HOG000109302; -. DR OMA; RINNETR; -. DR BioCyc; NMAR436308:GI3J-1754-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR011009; Kinase-like_dom. DR InterPro; IPR004147; UbiB_dom. DR Pfam; PF03109; ABC1; 1. DR SUPFAM; SSF56112; SSF56112; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 467 486 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 492 511 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 105 218 ABC1. {ECO:0000259|Pfam:PF03109}. SQ SEQUENCE 514 AA; 58458 MW; B589EC1DB489F6A0 CRC64; MSAGRTIYVL IKLLPSILAL RKDRKKWTQQ EKNTIDSEQF RKNARKALDT FVSLGPVYIK LGQWLSSRAD ILPQPYLEEL SKLQDSVPSA PFEQVKPIIE KDLGPINEKF DDIDTNSISG ASLGQVYRGS ISGQQIVIKV KRPGIEQVVK EDLKVLKKIL PLALRFVDPN LRYSAKAMLS QFIETIREEM DYTNESENLK KIKQDMENND KVIVPSVYDD YSSKNVLTME YLPGIKVTNV QALDEKGVDR EQLVIDVHKV FFTMLLKHSL FHADPHPGNI SVTDDGKLIL YDYGMVGRIN NETRYKLIRL YLALVEKNPP RVVNAMAELG MLTPGYNRQV IEKGIELSIR AMHGNKPDEM EVQSLMELAN QTMSKFPFVL PKNLALYMRM ASIIEGIYKT HDVDFKFVKV LRNILQEENM IPKAYVEELK ISFDKFAKSI DSALRLGPEM EKFMDEAKFS MQKRKPMVFL GGSIFASAIF IGSVLLYQTN EIFGISGMIA SGLIMIGSAI FRKH // ID A9A1B8_NITMS Unreviewed; 95 AA. AC A9A1B8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12753.1}; GN OrderedLocusNames=Nmar_0857 {ECO:0000313|EMBL:ABX12753.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12753.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12753.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12753.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12753.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12753; ABX12753; Nmar_0857. DR KEGG; nmr:Nmar_0857; -. DR BioCyc; NMAR436308:GI3J-884-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 95 AA; 10527 MW; 70F1EB7D35551070 CRC64; MAKIGDKAFT ITFIEDSDYT QGDQITKGVK ITTKETFEIE GNFVNKFHTT RVAIVKKFSN EKLRSDVNNG NSLGPVKCVS EKSASGKNFY NLVDA // ID A9A3D3_NITMS Unreviewed; 238 AA. AC A9A3D3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 49. DE SubName: Full=Phosphoserine phosphatase SerB {ECO:0000313|EMBL:ABX12562.1}; DE EC=3.1.3.3 {ECO:0000313|EMBL:ABX12562.1}; GN OrderedLocusNames=Nmar_0666 {ECO:0000313|EMBL:ABX12562.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12562.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12562.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12562.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12562.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3D3; -. DR STRING; 436308.Nmar_0666; -. DR EnsemblBacteria; ABX12562; ABX12562; Nmar_0666. DR KEGG; nmr:Nmar_0666; -. DR eggNOG; arCOG01158; Archaea. DR eggNOG; COG0560; LUCA. DR HOGENOM; HOG000231114; -. DR KO; K01079; -. DR OMA; RVAFCAK; -. DR BioCyc; NMAR436308:GI3J-691-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004647; F:phosphoserine phosphatase activity; IEA:UniProtKB-EC. DR GO; GO:0006564; P:L-serine biosynthetic process; IEA:InterPro. DR Gene3D; 1.10.150.210; -; 1. DR Gene3D; 3.40.50.1000; -; 1. DR InterPro; IPR023214; HAD-like_dom. DR InterPro; IPR006383; HAD-SF_hydro_IB_PSP-like. DR InterPro; IPR023190; Pser_Pase_dom_2. DR SUPFAM; SSF56784; SSF56784; 1. DR TIGRFAMs; TIGR01488; HAD-SF-IB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12562.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 238 AA; 26745 MW; 0A51B00CD54E5CAD CRC64; MISHIHSPNF NIISKFLQNR NQLLVIFDVE GVLYDEEYLP ILAEKLNKQD EIWAITKQGI QGKINWEEGL RTRVAALKGL DEKTCQEVSD ALPIMTGAKE ACRALKAAGW KLMAVSGGFT LMMERLKDEL GLDYVYSNEL IFKDGKLDGV KINVDSDKSK SARIKIEEWG EKKENIVCVV DGANDVKLFD ICGLGIAYRA QDLVKDLATT TLEEKDLSKI LDIINKHYKL ELESPTPA // ID A9A483_NITMS Unreviewed; 303 AA. AC A9A483; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 60. DE SubName: Full=Lactate/malate dehydrogenase {ECO:0000313|EMBL:ABX12572.1}; GN OrderedLocusNames=Nmar_0676 {ECO:0000313|EMBL:ABX12572.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12572.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12572.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12572.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the LDH/MDH superfamily. CC {ECO:0000256|RuleBase:RU003369}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12572.1; -; Genomic_DNA. DR ProteinModelPortal; A9A483; -. DR STRING; 436308.Nmar_0676; -. DR EnsemblBacteria; ABX12572; ABX12572; Nmar_0676. DR KEGG; nmr:Nmar_0676; -. DR eggNOG; arCOG00246; Archaea. DR eggNOG; COG0039; LUCA. DR HOGENOM; HOG000213793; -. DR KO; K00024; -. DR OMA; EKKGATN; -. DR BioCyc; NMAR436308:GI3J-701-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004459; F:L-lactate dehydrogenase activity; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR GO; GO:0019752; P:carboxylic acid metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR Gene3D; 3.90.110.10; -; 1. DR InterPro; IPR001557; L-lactate/malate_DH. DR InterPro; IPR018177; L-lactate_DH_AS. DR InterPro; IPR022383; Lactate/malate_DH_C. DR InterPro; IPR001236; Lactate/malate_DH_N. DR InterPro; IPR015955; Lactate_DH/Glyco_Ohase_4_C. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR11540; PTHR11540; 1. DR Pfam; PF02866; Ldh_1_C; 1. DR Pfam; PF00056; Ldh_1_N; 1. DR PIRSF; PIRSF000102; Lac_mal_DH; 1. DR PRINTS; PR00086; LLDHDRGNASE. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF56327; SSF56327; 1. DR PROSITE; PS00064; L_LDH; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000256|RuleBase:RU003369}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 140 Ldh_1_N. {ECO:0000259|Pfam:PF00056}. FT DOMAIN 144 301 Ldh_1_C. {ECO:0000259|Pfam:PF02866}. SQ SEQUENCE 303 AA; 33121 MW; 1C2C6D20AD70323C CRC64; MMCLISIVGT GRVGASIAFL CVSNGLDDVL LVNTTKEKAI GESLDVASAI PANSKFSIRG TDDYSELIGS DIVIIAASVG IYTKHRAENI DHQVAMIKNI AKKIKKYCPS AIVLLVSNPL DVLTYFFQKT TGFSRFKVIG IASSLDTSRF RYYISETLSV PQSSVSNALV LGEHGDSMVP IFSGVSVGDN PLFSMIDSRD TITDNVRNYW RTLRNFKSRS QFGIAKNVFD VVDAIRNKKE ISIPASVVLD GEYDEHDVAM GIPVIINQNG VSEIQKIKLD DTESSSLKKS AEKIRSDIKS VHD // ID A9A2K5_NITMS Unreviewed; 104 AA. AC A9A2K5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 55. DE RecName: Full=Translation initiation factor 1A {ECO:0000256|HAMAP-Rule:MF_00216}; DE Short=aIF-1A {ECO:0000256|HAMAP-Rule:MF_00216}; GN Name=eif1a {ECO:0000256|HAMAP-Rule:MF_00216}; GN OrderedLocusNames=Nmar_1348 {ECO:0000313|EMBL:ABX13244.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13244.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13244.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13244.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Seems to be required for maximal rate of protein CC biosynthesis. Enhances ribosome dissociation into subunits and CC stabilizes the binding of the initiator Met-tRNA(I) to 40 S CC ribosomal subunits. {ECO:0000256|HAMAP-Rule:MF_00216}. CC -!- SIMILARITY: Belongs to the eIF-1A family. {ECO:0000256|HAMAP- CC Rule:MF_00216}. CC -!- SIMILARITY: Contains 1 S1-like domain. {ECO:0000256|HAMAP- CC Rule:MF_00216, ECO:0000256|RuleBase:RU004366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13244.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2K5; -. DR STRING; 436308.Nmar_1348; -. DR EnsemblBacteria; ABX13244; ABX13244; Nmar_1348. DR KEGG; nmr:Nmar_1348; -. DR eggNOG; arCOG01179; Archaea. DR eggNOG; COG0361; LUCA. DR HOGENOM; HOG000223676; -. DR KO; K03236; -. DR OMA; MKFRTWI; -. DR BioCyc; NMAR436308:GI3J-1382-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00216; aIF_1A; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR006196; RNA-binding_domain_S1_IF1. DR InterPro; IPR001253; TIF_eIF-1A. DR PANTHER; PTHR21668; PTHR21668; 1. DR Pfam; PF01176; eIF-1a; 1. DR ProDom; PD005579; TIF_eIF-1A; 1. DR SMART; SM00652; eIF1a; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS50832; S1_IF1_TYPE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Initiation factor {ECO:0000256|HAMAP-Rule:MF_00216, KW ECO:0000313|EMBL:ABX13244.1}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00216, KW ECO:0000313|EMBL:ABX13244.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 87 S1-like. {ECO:0000256|HAMAP- FT Rule:MF_00216, FT ECO:0000259|PROSITE:PS50832}. SQ SEQUENCE 104 AA; 12404 MW; AF24D28A0948C099 CRC64; MGKRQIKNES ALKKIKLPET QEEMFGRVIK MMGGENVMVK CSDNIARRGR IRGKLKRRVW IRDNDVVIIA PWEFGKEQRG DILWRYTLPQ VDWLKQNKYI PLDF // ID A9A2P2_NITMS Unreviewed; 381 AA. AC A9A2P2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE SubName: Full=2-alkenal reductase {ECO:0000313|EMBL:ABX13569.1}; DE EC=1.3.1.74 {ECO:0000313|EMBL:ABX13569.1}; GN OrderedLocusNames=Nmar_1673 {ECO:0000313|EMBL:ABX13569.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13569.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13569.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13569.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13569.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2P2; -. DR STRING; 436308.Nmar_1673; -. DR EnsemblBacteria; ABX13569; ABX13569; Nmar_1673. DR KEGG; nmr:Nmar_1673; -. DR eggNOG; arCOG02833; Archaea. DR eggNOG; COG0265; LUCA. DR HOGENOM; HOG000223641; -. DR OMA; KQKIMED; -. DR BioCyc; NMAR436308:GI3J-1718-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0032440; F:2-alkenal reductase [NAD(P)] activity; IEA:UniProtKB-EC. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro. DR Gene3D; 2.30.42.10; -; 1. DR InterPro; IPR001478; PDZ. DR InterPro; IPR009003; Peptidase_S1_PA. DR InterPro; IPR001940; Peptidase_S1C. DR Pfam; PF13180; PDZ_2; 1. DR PRINTS; PR00834; PROTEASES2C. DR SUPFAM; SSF50156; SSF50156; 1. DR SUPFAM; SSF50494; SSF50494; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13569.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 285 368 PDZ (DHR). {ECO:0000259|Pfam:PF13180}. SQ SEQUENCE 381 AA; 40292 MW; E9F3185B668CD2E0 CRC64; MYESKISLGG LSIVSAVVLV ATIFSASFVP GIVNVTAETT SSEILDSEVR DKSIKNSPDN LSLTQIFEQS ESGIVSIAVT KSSIINSGGV GSGFVYDDTG NIITNSHVVE NAKKIIVTFI DGRSYNAKVV GTDAYSDLAV IKINVDESIL DPLILGNSDS IKVGERVTAI GNPYGLSGSM TAGIVSQIGR LIPSQNSGFT IPDVIQTDAA INPGNSGGPL LNMKGDVVGV TTAIYSRDGG FSGVGFAIPS NTVNKIIPFL IKDGSYNHPW VGITSINITP DIADILELED ATGIMIMNVV KDGPADKSDL MGSSEIIEKN GIQYTLGGDV ILAIDDVEVR KVDDLITHLQ KEKSVGDTTT LKILRDDKII FKDILLEKRP D // ID A9A1G1_NITMS Unreviewed; 380 AA. AC A9A1G1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE RecName: Full=DNA double-strand break repair protein Mre11 {ECO:0000256|HAMAP-Rule:MF_02044}; DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_02044}; GN Name=mre11 {ECO:0000256|HAMAP-Rule:MF_02044}; GN OrderedLocusNames=Nmar_1244 {ECO:0000313|EMBL:ABX13140.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13140.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13140.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13140.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Part of the Rad50/Mre11 complex, which is involved in CC the early steps of DNA double-strand break (DSB) repair. The CC complex may facilitate opening of the processed DNA ends to aid in CC the recruitment of HerA and NurA. Mre11 binds to DSB ends and has CC both double-stranded 3'-5' exonuclease activity and single- CC stranded endonuclease activity. {ECO:0000256|HAMAP-Rule:MF_02044}. CC -!- COFACTOR: CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_02044}; CC Note=Binds 2 manganese ions per subunit. {ECO:0000256|HAMAP- CC Rule:MF_02044}; CC -!- ENZYME REGULATION: Nuclease activity is regulated by Rad50. CC {ECO:0000256|HAMAP-Rule:MF_02044}. CC -!- SUBUNIT: Homodimer. Forms a heterotetramer composed of two Mre11 CC subunits and two Rad50 subunits. {ECO:0000256|HAMAP- CC Rule:MF_02044}. CC -!- SIMILARITY: Belongs to the MRE11/RAD32 family. {ECO:0000256|HAMAP- CC Rule:MF_02044}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13140.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G1; -. DR STRING; 436308.Nmar_1244; -. DR EnsemblBacteria; ABX13140; ABX13140; Nmar_1244. DR KEGG; nmr:Nmar_1244; -. DR eggNOG; arCOG00397; Archaea. DR eggNOG; COG0420; LUCA. DR OMA; KILVLHQ; -. DR BioCyc; NMAR436308:GI3J-1277-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006302; P:double-strand break repair; IEA:UniProtKB-HAMAP. DR Gene3D; 3.60.21.10; -; 1. DR HAMAP; MF_02044; Mre11; 1. DR InterPro; IPR024654; Calcineurin-like_PHP_lpxH. DR InterPro; IPR029052; Metallo-depent_PP-like. DR InterPro; IPR032885; Mre11_archaea-type. DR Pfam; PF12850; Metallophos_2; 1. DR SUPFAM; SSF56300; SSF56300; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA damage {ECO:0000256|HAMAP-Rule:MF_02044}; KW DNA repair {ECO:0000256|HAMAP-Rule:MF_02044}; KW Endonuclease {ECO:0000256|HAMAP-Rule:MF_02044}; KW Exonuclease {ECO:0000256|HAMAP-Rule:MF_02044}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_02044}; KW Manganese {ECO:0000256|HAMAP-Rule:MF_02044}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_02044}; KW Nuclease {ECO:0000256|HAMAP-Rule:MF_02044}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 212 Metallophos_2. FT {ECO:0000259|Pfam:PF12850}. FT ACT_SITE 85 85 Proton donor. {ECO:0000256|HAMAP- FT Rule:MF_02044}. FT METAL 8 8 Manganese 1. {ECO:0000256|HAMAP- FT Rule:MF_02044}. FT METAL 10 10 Manganese 1; via tele nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_02044}. FT METAL 49 49 Manganese 1. {ECO:0000256|HAMAP- FT Rule:MF_02044}. FT METAL 49 49 Manganese 2. {ECO:0000256|HAMAP- FT Rule:MF_02044}. FT METAL 84 84 Manganese 2. {ECO:0000256|HAMAP- FT Rule:MF_02044}. FT METAL 158 158 Manganese 2; via tele nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_02044}. FT METAL 187 187 Manganese 2; via pros nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_02044}. FT METAL 189 189 Manganese 1; via tele nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_02044}. SQ SEQUENCE 380 AA; 43179 MW; 172B9016626F0DBE CRC64; MQFSHISDTH LGLVQYGSEE RAQDVYDVFN QAIDTSIKDH VDFVIFAGDI FHVPNPNGTA IVQMANGLKR LKQNNIDSFF ILGEHDISRI RTTPIPYVYH NLEFSKYIGQ GKPIEYKGVL LAGFDKIRKT EIPQYEEKFA EVDKAAQNFS GHKILVLHQG ITEFNKFAGE LQSTDLPKNF TYYAMGHLHD TDVKKFNHLN GPIAYPGSIE LTTSEGIKET KKGFFEVDIS GQEANPNWIE LDTRPQFSFK TDYQEISKTI DEISEKITSL SKKPIVEVNI QGENIETDHI QAQIARLNSI VLRCFWRIST KQVSDSSVFL DKPNIIDDEM FRLSVDALGS EQAANLAIKE LLPVLSSGQI QEASQIIIEN FEKFKKERKQ // ID A9A5L7_NITMS Unreviewed; 417 AA. AC A9A5L7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12728.1}; GN OrderedLocusNames=Nmar_0832 {ECO:0000313|EMBL:ABX12728.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12728.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12728.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12728.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12728.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5L7; -. DR STRING; 436308.Nmar_0832; -. DR EnsemblBacteria; ABX12728; ABX12728; Nmar_0832. DR KEGG; nmr:Nmar_0832; -. DR eggNOG; arCOG00626; Archaea. DR eggNOG; COG1253; LUCA. DR HOGENOM; HOG000062297; -. DR OMA; APFTQIF; -. DR BioCyc; NMAR436308:GI3J-859-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro. DR GO; GO:0016614; F:oxidoreductase activity, acting on CH-OH group of donors; IEA:InterPro. DR Gene3D; 3.30.465.10; -; 1. DR InterPro; IPR000644; CBS_dom. DR InterPro; IPR016169; CO_DH_flavot_FAD-bd_sub2. DR InterPro; IPR002550; DUF21. DR InterPro; IPR016166; FAD-bd_2. DR InterPro; IPR005170; Transptr-assoc_dom. DR Pfam; PF00571; CBS; 2. DR Pfam; PF03471; CorC_HlyC; 1. DR Pfam; PF01595; DUF21; 1. DR SMART; SM01091; CorC_HlyC; 1. DR SUPFAM; SSF56176; SSF56176; 1. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 87 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 110 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 122 141 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 205 264 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 270 327 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 417 AA; 46142 MW; 85B1B95A54020C9E CRC64; MVDLWVEIGA LAVLIGLSGF FSGLEVALVG VRKSKVVQLF NEGKKGAKAL YKLKTNPGWM MSSVNLGNNL VNVGASALAT SVAIRMFGDE GLGIAVGIMT FLILIFGEIT PKTYCNANST KIALRYAPIL LGFSYALYPV VKFFETITKG VVKMTGSSYA PPPITEEEIK GVIDQGLEEK ALERDEMELV HGALKFDDTV IRSVMTPRTK MFTLNSKMLL FEALPQINQS GHSRIPIYGD TQDDIVGFIH ARDVLKELEK DNEVVSLEQI ARKPVFASQE KMVSSLLKEM KGRKTHMAIV VDEHGGVEGL VTLEDLLEEI VGEIEDETDL TRTIGYERID QDTIVTNGDI EIDIVNEIFK TNVPEGDDYA SLSGLLHERL QDIPQEGDKV EVEDLRIVVE KVSKNIPQKI RIEKIRT // ID A9A3J6_NITMS Unreviewed; 67 AA. AC A9A3J6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 49. DE SubName: Full=RNA polymerase Rbp10 {ECO:0000313|EMBL:ABX12928.1}; GN OrderedLocusNames=Nmar_1032 {ECO:0000313|EMBL:ABX12928.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12928.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12928.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12928.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12928.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3J6; -. DR STRING; 436308.Nmar_1032; -. DR EnsemblBacteria; ABX12928; ABX12928; Nmar_1032. DR KEGG; nmr:Nmar_1032; -. DR eggNOG; arCOG04341; Archaea. DR eggNOG; COG1996; LUCA. DR KO; K03059; -. DR OMA; PEIKCIC; -. DR BioCyc; NMAR436308:GI3J-1063-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR Gene3D; 2.20.28.30; -; 1. DR InterPro; IPR006591; RNAP_P/RPABC4. DR InterPro; IPR029040; RPABC4/Spt4. DR SMART; SM00659; RPOLCX; 1. DR SUPFAM; SSF63393; SSF63393; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 67 AA; 7630 MW; FB9589664C8F2F8C CRC64; MINMAEENFD EVEETPVETF DVNYSCLRCG TMVSNTELSR LPEIKCICGF RVFTKVRPPV VKTVKAI // ID A9A3P4_NITMS Unreviewed; 259 AA. AC A9A3P4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Non-specific serine/threonine protein kinase {ECO:0000313|EMBL:ABX13306.1}; DE EC=2.7.11.1 {ECO:0000313|EMBL:ABX13306.1}; GN OrderedLocusNames=Nmar_1410 {ECO:0000313|EMBL:ABX13306.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13306.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13306.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13306.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13306.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3P4; -. DR STRING; 436308.Nmar_1410; -. DR EnsemblBacteria; ABX13306; ABX13306; Nmar_1410. DR KEGG; nmr:Nmar_1410; -. DR eggNOG; arCOG01180; Archaea. DR eggNOG; COG1718; LUCA. DR HOGENOM; HOG000223687; -. DR KO; K07178; -. DR OMA; PKEHEYL; -. DR BioCyc; NMAR436308:GI3J-1445-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW. DR InterPro; IPR011009; Kinase-like_dom. DR InterPro; IPR000687; RIO_kinase. DR InterPro; IPR017407; Ser/Thr_kinase_Rio1. DR PANTHER; PTHR10593:SF23; PTHR10593:SF23; 1. DR SMART; SM00090; RIO; 1. DR SUPFAM; SSF56112; SSF56112; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13306.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Serine/threonine-protein kinase {ECO:0000313|EMBL:ABX13306.1}; KW Transferase {ECO:0000313|EMBL:ABX13306.1}. SQ SEQUENCE 259 AA; 29448 MW; 9DF9A4E006A8B507 CRC64; MTDILSKKLE SKIDKKLISK AKRKTLDDGF KKGKVVNEVL DKPTVMTLYK MITDHIIAYV NGAVSAGKES VLFWGVDEND SDVALKIYLV STSNFKKREP YILGDPRFSN VKKGTKNLVY LWAKKEYRNL TQCFEAGIPV PKPLHVTNNV LAMEFVGENG APGKSLLDSQ VDEDDYKQSI QIILDMYQKA KLVHGDFSEY NIFKTQNGLV VFDLGSAVDL RHPNTQEFLK RDINNITRFF KKRGVSVEDT DKLFEDIVK // ID A9A5W4_NITMS Unreviewed; 721 AA. AC A9A5W4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 56. DE SubName: Full=AAA family ATPase, CDC48 subfamily {ECO:0000313|EMBL:ABX13119.1}; DE EC=3.6.4.6 {ECO:0000313|EMBL:ABX13119.1}; GN OrderedLocusNames=Nmar_1223 {ECO:0000313|EMBL:ABX13119.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13119.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13119.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13119.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13119.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5W4; -. DR STRING; 436308.Nmar_1223; -. DR EnsemblBacteria; ABX13119; ABX13119; Nmar_1223. DR KEGG; nmr:Nmar_1223; -. DR eggNOG; arCOG01308; Archaea. DR eggNOG; COG0464; LUCA. DR HOGENOM; HOG000223224; -. DR KO; K13525; -. DR OMA; VRPSITK; -. DR BioCyc; NMAR436308:GI3J-1256-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.330.10; -; 1. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR005938; AAA_ATPase_CDC48. DR InterPro; IPR009010; Asp_de-COase-like_dom. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR003960; ATPase_AAA_CS. DR InterPro; IPR004201; Cdc48_dom2. DR InterPro; IPR029067; CDC48_domain_2-like. DR InterPro; IPR003338; CDC4_N-term_subdom. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00004; AAA; 2. DR Pfam; PF02933; CDC48_2; 1. DR Pfam; PF02359; CDC48_N; 1. DR SMART; SM00382; AAA; 2. DR SMART; SM01072; CDC48_2; 1. DR SMART; SM01073; CDC48_N; 1. DR SUPFAM; SSF50692; SSF50692; 1. DR SUPFAM; SSF52540; SSF52540; 2. DR SUPFAM; SSF54585; SSF54585; 1. DR TIGRFAMs; TIGR01243; CDC48; 1. DR PROSITE; PS00674; AAA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13119.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 93 CDC48_N. {ECO:0000259|SMART:SM01073}. FT DOMAIN 108 171 CDC48_2. {ECO:0000259|SMART:SM01072}. FT DOMAIN 212 348 AAA. {ECO:0000259|SMART:SM00382}. FT DOMAIN 485 619 AAA. {ECO:0000259|SMART:SM00382}. SQ SEQUENCE 721 AA; 79849 MW; 8A2A65E951010F68 CRC64; MRKEEPLQMR IGEAKQRDVG KKRARIGPEA MDFLKVTPGD IVEVMGSRTS CAVIWPVDED EKFPDIIRVD GQTRKNVGAS LNDIVKIRKV TSKIAKSVSL TPVNDSVTVD KEFTDFVKNR LKGLPITHGD EISVMILGNS MDFKITKTTP KGVVKIDRST TLNISTETAV DRKVRVTYEE VGGLGEKVKA MREIVELPLR HPELFSRLGI EPHSGILLYG PPGCGKTLLA KVMASESEAN MFPINGPEIM NKYYGETEAK LRDIFKEAKD NSPSIIFIDE IDAIAPKREE AYGDVEKRVV AQLLALMDGL NDRGNVIVLG ATNRPDSVDP ALRRPGRFDR EFEISVPNED GRIEILQIHT RGMPIDEDID LKDLASELHG YTGADIKSLC REAAMKSIRR YLPEIDLETE KIPSEVLQSM KIKLIDFYDA MHEVVPTAMR EVYVERPKVW WQDVGGLDEI KKSLTDNLIL AMNEPGKFTK MGIKPPKGAL IYGPPGCGKT LLGRALATET GANMILVRGP EILSKWVGES EKAVREIFRK AKASSPCVVI FDELDSLARS KSGEGGVGEN ILSQLLTEIE DGVSSRVVVI GITNRPDVVD NSLLRTGRLD LVLYVEPPDE KGRLEIIKIL TKKMPLTSDV KLQEIAVATQ NYTGADLAAL CREAAVQAMQ NNATKISSQD FANSLKHVRP SITKEVDQWY KSVKESISNV VPKTGDKTFY G // ID A9A4M9_NITMS Unreviewed; 425 AA. AC A9A4M9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Hydroxypyruvate reductase {ECO:0000313|EMBL:ABX13007.1}; DE EC=1.1.1.81 {ECO:0000313|EMBL:ABX13007.1}; GN OrderedLocusNames=Nmar_1111 {ECO:0000313|EMBL:ABX13007.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13007.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13007.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13007.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13007.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M9; -. DR STRING; 436308.Nmar_1111; -. DR EnsemblBacteria; ABX13007; ABX13007; Nmar_1111. DR KEGG; nmr:Nmar_1111; -. DR eggNOG; arCOG04170; Archaea. DR eggNOG; COG2379; LUCA. DR HOGENOM; HOG000018914; -. DR OMA; CMGLAQA; -. DR BioCyc; NMAR436308:GI3J-1142-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016618; F:hydroxypyruvate reductase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.1480.10; -; 1. DR InterPro; IPR007835; MOFRL. DR InterPro; IPR025286; MOFRL_assoc_dom. DR Pfam; PF13660; DUF4147; 1. DR Pfam; PF05161; MOFRL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13007.1}; KW Pyruvate {ECO:0000313|EMBL:ABX13007.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 19 251 DUF4147. {ECO:0000259|Pfam:PF13660}. FT DOMAIN 319 419 MOFRL. {ECO:0000259|Pfam:PF05161}. SQ SEQUENCE 425 AA; 46906 MW; A5B5AAFAEC2A6B95 CRC64; MIIQNFEELA TNDKKKECLE ILESGLRAAN PENIISKYVT PEKIKINGKI IDITKYSNIY SVAFGKAGDS MTRALNAIIP VKSGIIVIPK GSKSIIKGKK FQIFNSRHPE PDQTSVKAAK EVIKFVQNKK SDELIIFLVS GGGSSLLAMP NGITLDDKIF VTKLLLKSGA SIQEFNCVRK HLSKIKGGKL VENMKCDGIS LIMSDVEGDD LSSIASGTTY MDNTTFSDAL EILEKYKLKR KTPIEVLQIL EKGVEDEKLE TPKESKIENQ VIANNENCLK AMEIEAKKKG YKVKTLQVFG DIKEAVTKIL ENISEDQKMC LIVGGETTVK VLGKGMGGRN QELVLRILKN TQKFKKLVIA SMGTDGIDGN SVFAGAITEN LKVDLDTMKE FLKNSDSGRF FQKQKGSIVT DFTHTNLMDI GVILR // ID A9A1H9_NITMS Unreviewed; 316 AA. AC A9A1H9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Tubulin/FtsZ GTPase {ECO:0000313|EMBL:ABX13158.1}; GN OrderedLocusNames=Nmar_1262 {ECO:0000313|EMBL:ABX13158.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13158.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13158.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13158.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13158.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1H9; -. DR STRING; 436308.Nmar_1262; -. DR EnsemblBacteria; ABX13158; ABX13158; Nmar_1262. DR KEGG; nmr:Nmar_1262; -. DR eggNOG; arCOG02201; Archaea. DR eggNOG; COG0206; LUCA. DR HOGENOM; HOG000107577; -. DR KO; K03531; -. DR OMA; CSIDCEL; -. DR BioCyc; NMAR436308:GI3J-1295-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR Gene3D; 3.40.50.1440; -; 1. DR InterPro; IPR003008; Tubulin_FtsZ_GTPase. DR Pfam; PF00091; Tubulin; 1. DR SMART; SM00864; Tubulin; 1. DR SUPFAM; SSF52490; SSF52490; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW GTP-binding {ECO:0000256|RuleBase:RU000351}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU000351}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 316 AA; 34137 MW; 52824FD81C580E10 CRC64; MSFQVKEPVL VVGLGGAGSK LALKAKDSLN SDCLLISNDS KDFAGDVPSV HVSTDSVVNP SMQLIRGSTY NASEEIKSKI SGYSTIVMMS NLAGKAGSAM APVVSEMCKE SDIGLVSFAI MPFKYEKDRI FNSGVSLKRV RENSECTVVL DNDSLLESNP DLTPKACYDI ANSAIMHVVE SLGTSEMSHD TNILTTSKEG QDIEDSLRDS LKMLYENAPP NAVKRSMLYV VGGSNIPVGV LNSITNLTSG ILGESNSQID MTSEHEESKV VMLSSIQGMT KFDNYDPLGM IPQEDTLDWS TPDCSIDCEL DLYQLE // ID A9A3G8_NITMS Unreviewed; 541 AA. AC A9A3G8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Gamma-glutamyltransferase {ECO:0000313|EMBL:ABX12900.1}; DE EC=2.3.2.2 {ECO:0000313|EMBL:ABX12900.1}; GN OrderedLocusNames=Nmar_1004 {ECO:0000313|EMBL:ABX12900.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12900.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12900.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12900.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12900.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3G8; -. DR STRING; 436308.Nmar_1004; -. DR EnsemblBacteria; ABX12900; ABX12900; Nmar_1004. DR KEGG; nmr:Nmar_1004; -. DR eggNOG; arCOG04053; Archaea. DR eggNOG; COG0405; LUCA. DR HOGENOM; HOG000295155; -. DR KO; K00681; -. DR OMA; FMLVHLA; -. DR BioCyc; NMAR436308:GI3J-1032-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003840; F:gamma-glutamyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0006749; P:glutathione metabolic process; IEA:InterPro. DR InterPro; IPR000101; GGT_peptidase. DR InterPro; IPR029055; Ntn_hydrolases_N. DR PANTHER; PTHR11686; PTHR11686; 1. DR Pfam; PF01019; G_glu_transpept; 1. DR PRINTS; PR01210; GGTRANSPTASE. DR SUPFAM; SSF56235; SSF56235; 1. PE 4: Predicted; KW Acyltransferase {ECO:0000313|EMBL:ABX12900.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12900.1}. SQ SEQUENCE 541 AA; 60714 MW; 1B43D834E5AA0F9B CRC64; MDVSSIEKSF VTTKNKKCSV AKNGMVASAF PDATKAGVEM LKKGGNAVDA ACATALALGV CEPQASGIGG QSMAILHVDG KTFAVDGSSR APSLAHISFF EKRSRSLIGY KATTVPSTVA TLGYLNERYG QLDWSTIVKP SIRIAKRGYR ITKLQYELQE KHLKNFFKVK SKSGAKYFLK DGEVPYEIGD LFVQDDLAYT LEQLATYGYR SFYHGMISTL IDKDMKLNRG FLRKEDLALI PMPIERKVIS RRYRGIRVYT VPPPGAGSTM LLVLMMLNNL PSKFLTRTPR AYHYVSETHR KALLYREQRR FNPETYHQID KKIHLSRNFA KTLAKSIRDT IDPTLPLKES LDTEDTTHLS VMDKDGNAVG ITQSIELVYG SKAAADGLGF LYNNYMSAYE FDNPNHPFYL RPNAIPWTSV CPSIIFYNHE PWMVLGTPGS ARIFSTLSHF ISRVIDHNNS IDQAMEKPRI HCTVDGKISL EDDDSLVEII KHLKKMGYKI DIRERYSFFL GAIHAVLKRQ TGDGFQGVAE VRRDGTAEGL R // ID A9A1Y0_NITMS Unreviewed; 118 AA. AC A9A1Y0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Ribonuclease H {ECO:0000313|EMBL:ABX12101.1}; GN OrderedLocusNames=Nmar_0205 {ECO:0000313|EMBL:ABX12101.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12101.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12101.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12101.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12101.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Y0; -. DR STRING; 436308.Nmar_0205; -. DR EnsemblBacteria; ABX12101; ABX12101; Nmar_0205. DR KEGG; nmr:Nmar_0205; -. DR eggNOG; arCOG02942; Archaea. DR eggNOG; COG0328; LUCA. DR HOGENOM; HOG000104973; -. DR OMA; YSDSKNT; -. DR BioCyc; NMAR436308:GI3J-209-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro. DR Gene3D; 3.30.420.10; -; 1. DR InterPro; IPR012337; RNaseH-like_dom. DR InterPro; IPR002156; RNaseH_domain. DR SUPFAM; SSF53098; SSF53098; 1. DR PROSITE; PS50879; RNASE_H; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 118 RNase H. {ECO:0000259|PROSITE:PS50879}. SQ SEQUENCE 118 AA; 13132 MW; 6E1D3E424EF27D40 CRC64; MGISIFVDGS GGSNGGYGYF VKETGESFYE KKPEITNNQA EYLAIISALN KFVDSDDEIT IYSDSKNTVN QLNHEFAINN EQLRDLAREA WSIIGKFSKL SLVWVPRKEN LAGKMLGS // ID A9A4A9_NITMS Unreviewed; 174 AA. AC A9A4A9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ABX12598.1}; GN OrderedLocusNames=Nmar_0702 {ECO:0000313|EMBL:ABX12598.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12598.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12598.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12598.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12598.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4A9; -. DR STRING; 436308.Nmar_0702; -. DR EnsemblBacteria; ABX12598; ABX12598; Nmar_0702. DR KEGG; nmr:Nmar_0702; -. DR eggNOG; arCOG06712; Archaea. DR eggNOG; COG2202; LUCA. DR BioCyc; NMAR436308:GI3J-727-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000014; PAS. DR Pfam; PF13426; PAS_9; 1. DR SMART; SM00091; PAS; 1. DR SUPFAM; SSF55785; SSF55785; 1. DR TIGRFAMs; TIGR00229; sensory_box; 1. DR PROSITE; PS50112; PAS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 72 PAS (PER-ARNT-SIM). FT {ECO:0000259|PROSITE:PS50112}. SQ SEQUENCE 174 AA; 20253 MW; 3CC03D5A41F3D20E CRC64; MPQTEARKTL KDAPVMWRRI NSIGAILDCN STYAVNLGYS KSEILGKTIF EHVPKEEWQD MNNSLKTWFE TGKVTDRKII FKRQDGSTFP GVLHATSLYD ENKNLLGSNT VIFDLTQMND DKIKEYEQFF KDANSRLDEI KDKEYNELDE ESKSEYDGLK DMFEMLSTID LKKI // ID A9A584_NITMS Unreviewed; 258 AA. AC A9A584; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE RecName: Full=D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160314}; DE EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160312}; GN Name=dtdA {ECO:0000256|HAMAP-Rule:MF_00562}; GN OrderedLocusNames=Nmar_0387 {ECO:0000313|EMBL:ABX12283.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12283.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12283.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12283.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: D-aminoacyl-tRNA deacylase with broad substrate CC specificity. By recycling D-aminoacyl-tRNA to D-amino acids and CC free tRNA molecules, this enzyme counteracts the toxicity CC associated with the formation of D-aminoacyl-tRNA entities in CC vivo. {ECO:0000256|HAMAP-Rule:MF_00562}. CC -!- CATALYTIC ACTIVITY: A D-aminoacyl-tRNA + H(2)O = a D-amino acid + CC tRNA. {ECO:0000256|HAMAP-Rule:MF_00562, CC ECO:0000256|SAAS:SAAS00160313}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00562}; CC Note=Binds 2 Zn(2+) ions per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00562}; CC -!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_00562}. CC -!- SIMILARITY: Belongs to the DtdA deacylase family. CC {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00547192}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12283.1; -; Genomic_DNA. DR ProteinModelPortal; A9A584; -. DR STRING; 436308.Nmar_0387; -. DR EnsemblBacteria; ABX12283; ABX12283; Nmar_0387. DR KEGG; nmr:Nmar_0387; -. DR eggNOG; arCOG01616; Archaea. DR eggNOG; COG1650; LUCA. DR HOGENOM; HOG000015484; -. DR KO; K09716; -. DR OMA; EATHHTP; -. DR BioCyc; NMAR436308:GI3J-404-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051499; F:D-aminoacyl-tRNA deacylase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0019478; P:D-amino acid catabolic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00562; Deacylase_DtdA; 1. DR InterPro; IPR018033; Deacylase_DtdA_archaea. DR InterPro; IPR007508; DtdA. DR Pfam; PF04414; tRNA_deacylase; 1. DR PIRSF; PIRSF016210; UCP016210; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00562, KW ECO:0000256|SAAS:SAAS00431896}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00562, KW ECO:0000256|SAAS:SAAS00431895}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00431894}. SQ SEQUENCE 258 AA; 29151 MW; 3AD16924D02DA098 CRC64; MELLVAYVDD PAGHNMAKFL CKDMTQDGDV FRGKYYDLII IPTPAISADW LEEKYDYDGF VFLSKHAAES GVLALTCHST GNFSEAKFGG KDRQVAIPHP DLQKKYLQTL RDHQSDFVEF DITIEATHHG PTDLKKPSIF IEIGTTEKQW TDENLCHRVA KFVHEVMSND IPKNPVAICF GGTHYPTKFT EQLLDGKYAL GTVIPKHALD NLDEELFSHI LKQNNMAKFA LLDWNGLGPN KQKVLDLLES TELEVIKL // ID A9A2D3_NITMS Unreviewed; 852 AA. AC A9A2D3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE RecName: Full=DNA polymerase {ECO:0000256|RuleBase:RU000442}; DE EC=2.7.7.7 {ECO:0000256|RuleBase:RU000442}; GN OrderedLocusNames=Nmar_0948 {ECO:0000313|EMBL:ABX12844.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12844.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12844.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12844.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = CC diphosphate + DNA(n+1). {ECO:0000256|RuleBase:RU000442}. CC -!- SIMILARITY: Belongs to the DNA polymerase type-B family. CC {ECO:0000256|RuleBase:RU000442}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12844.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0948; -. DR EnsemblBacteria; ABX12844; ABX12844; Nmar_0948. DR KEGG; nmr:Nmar_0948; -. DR eggNOG; arCOG00328; Archaea. DR eggNOG; COG0417; LUCA. DR HOGENOM; HOG000108124; -. DR KO; K02319; -. DR OMA; KGKKYAG; -. DR BioCyc; NMAR436308:GI3J-976-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW. DR Gene3D; 3.30.420.10; -; 1. DR Gene3D; 3.90.1600.10; -; 2. DR InterPro; IPR006172; DNA-dir_DNA_pol_B. DR InterPro; IPR017964; DNA-dir_DNA_pol_B_CS. DR InterPro; IPR006133; DNA-dir_DNA_pol_B_exonuc. DR InterPro; IPR006134; DNA-dir_DNA_pol_B_multi_dom. DR InterPro; IPR023211; DNA_pol_palm_dom. DR InterPro; IPR012337; RNaseH-like_dom. DR Pfam; PF00136; DNA_pol_B; 1. DR Pfam; PF03104; DNA_pol_B_exo1; 1. DR PRINTS; PR00106; DNAPOLB. DR SMART; SM00486; POLBc; 1. DR SUPFAM; SSF53098; SSF53098; 1. DR PROSITE; PS00116; DNA_POLYMERASE_B; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA replication {ECO:0000256|RuleBase:RU000442}; KW DNA-binding {ECO:0000256|RuleBase:RU000442}; KW DNA-directed DNA polymerase {ECO:0000256|RuleBase:RU000442}; KW Nucleotidyltransferase {ECO:0000256|RuleBase:RU000442}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU000442}. FT DOMAIN 45 358 DNA_pol_B_exo1. FT {ECO:0000259|Pfam:PF03104}. FT DOMAIN 412 817 DNA_pol_B. {ECO:0000259|Pfam:PF00136}. SQ SEQUENCE 852 AA; 98135 MW; 7316B3DA0E4F50D6 CRC64; MQVNMEETKK IESMPPSMLV SATYDNNSKS AVLKFYEPES QKLFLWKDEI GHKPYCYSRL APDELDFLQE RDDVLEIKTT QRYDLIKDKE IDMSKITVAD PLAIGGTAGD KSIRNVIETW ESDIKYYENY LYDRKLIVGK YYEIKDGKIV SHDLEISDEV KIALKSLLWD KVDSESMVDA EGFKKFVSEW ADLLNQPIPK IKRLSVDIEV EAEIGRIPDP KIAEKKVTAI GLKGSDGFDQ IFVLKTEGTE QGTNELDQNI KVTFYDLDKE KEMIYDAFKI IKEFPFVVTY NGDEFDLPYL YNRAERLGIK SSENPFYMMR DSATLKHGVH LDLYRTFSNR SFQIYAFSQK YTNFSLNEVS KALLGKEKID YGLEFDQLTL YQTANYCYND ALLTYELTSF NSELLMQLLV IIARIGRMPI DDIARMGVSQ WIRSLLYYEH RKRNCLIPKR QELERRSEGV MSDAVIKDKK YRGGLVVEPK EGIHFDVVVM DFASLYPSII KVRNLSYETV RCPHEDCKRN EVPGTNHWTC SKKNGLTSMI IGSLRDLRVN YYKSLSKKET LTDEQRQQYT VVSQALKVIL NASYGVMGAE IFPLYFLPAA EATTAIGRHT ILETIKKCES AGIEVLYGDT DSLFIKNPTK EQIQIVIDQA KKDHGVDLEI DKTYRYCVLS NRKKNYLGVT KEGKVDVKGL TGKKSHTPPF IKKLFYELLD VLSKVQTIED FEKAKKEISE KIATCGKKVE AKEIPLEDLT FNVMLSKAPS EYTKTIPQHI RAAKQLETIR EIKKGDRISY IKILNKPGVK PVEMAKKEEI DSKKYMEFME STLEQITSSM DLDFDTILGK PKQTGLDEFF WN // ID A9A212_NITMS Unreviewed; 136 AA. AC A9A212; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 58. DE RecName: Full=Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; DE AltName: Full=Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; DE AltName: Full=eIF-5A {ECO:0000256|HAMAP-Rule:MF_00085}; GN Name=eif5a {ECO:0000256|HAMAP-Rule:MF_00085}; GN OrderedLocusNames=Nmar_0529 {ECO:0000313|EMBL:ABX12425.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12425.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12425.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12425.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Functions by promoting the formation of the first CC peptide bond. {ECO:0000256|HAMAP-Rule:MF_00085, CC ECO:0000256|SAAS:SAAS00016432}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00085, CC ECO:0000256|SAAS:SAAS00016428}. CC -!- SIMILARITY: Belongs to the eIF-5A family. {ECO:0000256|HAMAP- CC Rule:MF_00085, ECO:0000256|SAAS:SAAS00541442}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12425.1; -; Genomic_DNA. DR ProteinModelPortal; A9A212; -. DR STRING; 436308.Nmar_0529; -. DR EnsemblBacteria; ABX12425; ABX12425; Nmar_0529. DR KEGG; nmr:Nmar_0529; -. DR eggNOG; arCOG04277; Archaea. DR eggNOG; COG0231; LUCA. DR HOGENOM; HOG000106269; -. DR KO; K03263; -. DR OMA; TKIMRIK; -. DR BioCyc; NMAR436308:GI3J-551-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0043022; F:ribosome binding; IEA:InterPro. DR GO; GO:0003746; F:translation elongation factor activity; IEA:InterPro. DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-HAMAP. DR GO; GO:0045901; P:positive regulation of translational elongation; IEA:InterPro. DR GO; GO:0045905; P:positive regulation of translational termination; IEA:InterPro. DR GO; GO:0006452; P:translational frameshifting; IEA:InterPro. DR Gene3D; 2.30.30.30; -; 1. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00085; eIF_5A; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR014722; Rib_L2_dom2. DR InterPro; IPR019769; Trans_elong_IF5A_hypusine_site. DR InterPro; IPR001884; Transl_elong_IF5A. DR InterPro; IPR022847; Transl_elong_IF5A_arc. DR InterPro; IPR020189; Transl_elong_IF5A_C. DR InterPro; IPR008991; Translation_prot_SH3-like. DR PANTHER; PTHR11673; PTHR11673; 1. DR Pfam; PF01287; eIF-5a; 1. DR PIRSF; PIRSF003025; eIF5A; 1. DR SMART; SM01376; eIF-5a; 1. DR SUPFAM; SSF50104; SSF50104; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00037; eIF_5A; 1. DR PROSITE; PS00302; IF5A_HYPUSINE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00085, KW ECO:0000256|SAAS:SAAS00424026}; KW Hypusine {ECO:0000256|HAMAP-Rule:MF_00085}; KW Initiation factor {ECO:0000256|HAMAP-Rule:MF_00085, KW ECO:0000256|SAAS:SAAS00424031, ECO:0000313|EMBL:ABX12425.1}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00085, KW ECO:0000256|SAAS:SAAS00424031, ECO:0000313|EMBL:ABX12425.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT MOD_RES 41 41 Hypusine. {ECO:0000256|HAMAP- FT Rule:MF_00085}. SQ SEQUENCE 136 AA; 15022 MW; 710A3777368D102C CRC64; MSKPSDLGSL KIGSYILLPH SDQPSGEPCR IVEYDTSKPG KHGAAKARIV AEGIFDGQKR PHVGPVSMQI HVPMINKKVG QIISMTGDTV QLMDSETFET IDVTLIDDEV QGKLENGQNV EYWVVMDKTK IMRIKT // ID A9A4E5_NITMS Unreviewed; 147 AA. AC A9A4E5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 59. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX12634.1}; GN OrderedLocusNames=Nmar_0738 {ECO:0000313|EMBL:ABX12634.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12634.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12634.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12634.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 3 HTH asnC-type DNA-binding domains. CC {ECO:0000256|RuleBase:RU000704}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12634.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4E5; -. DR STRING; 436308.Nmar_0738; -. DR EnsemblBacteria; ABX12634; ABX12634; Nmar_0738. DR KEGG; nmr:Nmar_0738; -. DR eggNOG; arCOG01580; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000115326; -. DR OMA; IVIAKFR; -. DR BioCyc; NMAR436308:GI3J-764-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR000485; AsnC-type_HTH_dom. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019888; Tscrpt_reg_AsnC-typ. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01037; AsnC_trans_reg; 1. DR Pfam; PF13404; HTH_AsnC-type; 1. DR PRINTS; PR00033; HTHASNC. DR SMART; SM00344; HTH_ASNC; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF54909; SSF54909; 1. DR PROSITE; PS50956; HTH_ASNC_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000704}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000704}; KW Transcription regulation {ECO:0000256|RuleBase:RU000704}. FT DOMAIN 3 64 HTH asnC-type DNA-binding. FT {ECO:0000259|PROSITE:PS50956}. SQ SEQUENCE 147 AA; 16628 MW; 42253174434ECDDA CRC64; MDLDKTDEKI LRNLMVDARL SARQLALKLG MSTVTVLSRI KKMEKEKIIN GYSAIIDHEK LGYSLTAIIE IIAKNDKVVD IEEEISKFEN VCGVYDITGS TDTIIIAKFK ERNELSRFVK KLASIPNVEN TITHVVLNTA KEDFRLS // ID A9A237_NITMS Unreviewed; 372 AA. AC A9A237; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE RecName: Full=Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; DE Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992}; DE EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992}; DE AltName: Full=Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; DE AltName: Full=Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; GN Name=mqnC {ECO:0000256|HAMAP-Rule:MF_00992}; GN OrderedLocusNames=Nmar_0554 {ECO:0000313|EMBL:ABX12450.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12450.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12450.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12450.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Radical SAM enzyme that catalyzes the cyclization of CC dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine CC futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, CC vitamin K2). {ECO:0000256|HAMAP-Rule:MF_00992}. CC -!- CATALYTIC ACTIVITY: Dehypoxanthine futalosine + S-adenosyl-L- CC methionine = cyclic dehypoxanthinyl futalosine + 5'-deoxyadenosine CC + L-methionine. {ECO:0000256|HAMAP-Rule:MF_00992}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00992, CC ECO:0000256|PIRSR:PIRSR004762-1}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|HAMAP-Rule:MF_00992, ECO:0000256|PIRSR:PIRSR004762- CC 1}; CC -!- PATHWAY: Quinol/quinone metabolism; menaquinone biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00992}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. MqnC family. CC {ECO:0000256|HAMAP-Rule:MF_00992}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12450.1; -; Genomic_DNA. DR ProteinModelPortal; A9A237; -. DR STRING; 436308.Nmar_0554; -. DR EnsemblBacteria; ABX12450; ABX12450; Nmar_0554. DR KEGG; nmr:Nmar_0554; -. DR eggNOG; arCOG00656; Archaea. DR eggNOG; COG1060; LUCA. DR HOGENOM; HOG000224281; -. DR OMA; AFIAWNF; -. DR BioCyc; NMAR436308:GI3J-576-MONOMER; -. DR UniPathway; UPA00079; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0005506; F:iron ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0046992; F:oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond; IEA:UniProtKB-HAMAP. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:InterPro. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00992; MqnC; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR022431; Cyclic_DHFL_synthase_mqnC. DR InterPro; IPR020050; FO_synthase_su2. DR InterPro; IPR005244; FO_synthase_su2-like. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF004762; CHP00423; 1. DR TIGRFAMs; TIGR03699; menaquin_MqnC; 1. DR TIGRFAMs; TIGR00423; TIGR00423; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00992, ECO:0000256|PIRSR:PIRSR004762- KW 1}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}; KW Menaquinone biosynthesis {ECO:0000256|HAMAP-Rule:MF_00992}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00992}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00992, KW ECO:0000256|PIRSR:PIRSR004762-1}. FT DOMAIN 69 239 Radical_SAM. {ECO:0000259|Pfam:PF04055}. FT METAL 73 73 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00992, FT ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 77 77 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00992, FT ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 80 80 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00992, FT ECO:0000256|PIRSR:PIRSR004762-1}. SQ SEQUENCE 372 AA; 41657 MW; D53B9442CC015037 CRC64; MSQTTEQLEK SDIKDILENS LNGKRPGPED CMRLLESDDV HLMGLVSGHL TRKQFGKKAS FVNNIILNYT NVCITDCKFC AFYRSPGADD SYTLTLEQIE SRVKTAWDMF KIRQVLIQGG HNPNLKIEYY EDAFRMIREK FPKVGVHGLS TSEIDMIARV EKSSTKEILS RLKDAGLQSM PGAGAEILTD SVKEIISPKK ISSDAWIRIM NEAHSLGIPS SATMMYGHVE NKNDIVEHFF KLVKLQEKTK GFMAFIPWNF EPNNTLMHEE GLVEYGTGGI QLLKMIAISR LIFDGLIPHI QSSWLTNGIG MAQLALQYGA DDFGGTLIGE EVVSCTGARS TELTDKIIMD AIHQIGYSVE ERDNFYNPIS VS // ID A9A262_NITMS Unreviewed; 527 AA. AC A9A262; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=Histone acetyltransferase, ELP3 family {ECO:0000313|EMBL:ABX12475.1}; DE EC=2.3.1.48 {ECO:0000313|EMBL:ABX12475.1}; GN OrderedLocusNames=Nmar_0579 {ECO:0000313|EMBL:ABX12475.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12475.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12475.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12475.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12475.1; -; Genomic_DNA. DR ProteinModelPortal; A9A262; -. DR STRING; 436308.Nmar_0579; -. DR EnsemblBacteria; ABX12475; ABX12475; Nmar_0579. DR KEGG; nmr:Nmar_0579; -. DR eggNOG; arCOG01361; Archaea. DR eggNOG; COG1243; LUCA. DR HOGENOM; HOG000227514; -. DR KO; K07739; -. DR OMA; CIETRPD; -. DR BioCyc; NMAR436308:GI3J-602-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004402; F:histone acetyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR Gene3D; 3.40.630.30; -; 1. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR016181; Acyl_CoA_acyltransferase. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR000182; GNAT_dom. DR InterPro; IPR005910; Hist_AcTrfase_ELP3. DR InterPro; IPR032432; Radical_SAM_C. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR Pfam; PF13673; Acetyltransf_10; 1. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF16199; Radical_SAM_C; 1. DR PIRSF; PIRSF005669; Hist_AcTrfase_ELP3; 1. DR SMART; SM00729; Elp3; 1. DR SUPFAM; SSF55729; SSF55729; 1. DR TIGRFAMs; TIGR01211; ELP3; 1. PE 4: Predicted; KW Acyltransferase {ECO:0000313|EMBL:ABX12475.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12475.1}. FT DOMAIN 81 335 Elp3. {ECO:0000259|SMART:SM00729}. SQ SEQUENCE 527 AA; 60180 MW; 67F2A44969303DAD CRC64; MSKLDSVFSK ACSEITQNLL TINEPSKKQV KEEIKRICAK YSLERIPRNH EILSMAKESE FDKLRKVLLK KPAKTASGVA VVALMPKPYA CPHGRCTYCP GGIEFNSPNS YTGNEPSTLN AIENEYDPKL QITTKIDKLI AFGHDPSKME IVIVGGTFLF MPRDYQENFI KSCYDALNGT DSKNLEEAKS NNEHASIRNV GFTIETKPDF CKKEHVDWML DYGVTRIEIG VQSLQERVYN IINRGHNYND VVESFQISKD AGYKLVAHMM PGLPTMTPEG DIADFKKLFS DSQLRPDMLK IYPSLVIENT PMYQEYKDGK YTPYSDEDMI QVLTEVKKDI PKWVRIMRVQ REISPNEIIA GPKSGNLRQI VHQNLTKQGL KCKCIRCREA GLTKSNPEER DIKLTRINYD SSGGKEVFLS FEDEDESIYG FLRLRKPSDD AHRDEVKDTC IVRELHVYGK SLKIGEKEEN EIQHSGFGKK LMKEAEKISK EEFDAKKMLV ISAVGTREYY QKLGYSLYGP YMAKELS // ID A9A4N7_NITMS Unreviewed; 421 AA. AC A9A4N7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 54. DE RecName: Full=Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; DE EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138}; DE AltName: Full=GARS {ECO:0000256|HAMAP-Rule:MF_00138}; DE AltName: Full=Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; DE AltName: Full=Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; GN Name=purD {ECO:0000256|HAMAP-Rule:MF_00138}; GN OrderedLocusNames=Nmar_1119 {ECO:0000313|EMBL:ABX13015.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13015.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13015.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13015.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + 5-phospho-D-ribosylamine + glycine = ADP CC + phosphate + N(1)-(5-phospho-D-ribosyl)glycinamide. CC {ECO:0000256|HAMAP-Rule:MF_00138}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00138}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00138}; CC Note=Binds 1 magnesium or manganese ion per subunit. CC {ECO:0000256|HAMAP-Rule:MF_00138}; CC -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; CC N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D- CC ribose 1-diphosphate: step 2/2. {ECO:0000256|HAMAP-Rule:MF_00138}. CC -!- SIMILARITY: Belongs to the GARS family. {ECO:0000256|HAMAP- CC Rule:MF_00138}. CC -!- SIMILARITY: Contains 1 ATP-grasp domain. {ECO:0000256|HAMAP- CC Rule:MF_00138}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13015.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N7; -. DR STRING; 436308.Nmar_1119; -. DR EnsemblBacteria; ABX13015; ABX13015; Nmar_1119. DR KEGG; nmr:Nmar_1119; -. DR eggNOG; arCOG04415; Archaea. DR eggNOG; COG0151; LUCA. DR HOGENOM; HOG000033463; -. DR KO; K01945; -. DR OMA; DEFGPPY; -. DR BioCyc; NMAR436308:GI3J-1150-MONOMER; -. DR UniPathway; UPA00074; UER00125. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0030145; F:manganese ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004637; F:phosphoribosylamine-glycine ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009113; P:purine nucleobase biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.20; -; 1. DR Gene3D; 3.90.600.10; -; 1. DR HAMAP; MF_00138; GARS; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR016185; PreATP-grasp_dom. DR InterPro; IPR020561; PRibGlycinamid_synth_ATP-grasp. DR InterPro; IPR000115; PRibGlycinamide_synth. DR InterPro; IPR020560; PRibGlycinamide_synth_C-dom. DR InterPro; IPR020562; PRibGlycinamide_synth_N. DR InterPro; IPR011054; Rudment_hybrid_motif. DR Pfam; PF01071; GARS_A; 1. DR Pfam; PF02843; GARS_C; 1. DR Pfam; PF02844; GARS_N; 1. DR SMART; SM01210; GARS_C; 1. DR SUPFAM; SSF51246; SSF51246; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR TIGRFAMs; TIGR00877; purD; 1. DR PROSITE; PS50975; ATP_GRASP; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00138}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:ABX13015.1}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00138}; KW Manganese {ECO:0000256|HAMAP-Rule:MF_00138}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00138}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00138}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00138}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 105 311 ATP-grasp. {ECO:0000256|HAMAP- FT Rule:MF_00138, FT ECO:0000259|PROSITE:PS50975}. FT NP_BIND 131 192 ATP. {ECO:0000256|HAMAP-Rule:MF_00138}. FT METAL 281 281 Magnesium or manganese. FT {ECO:0000256|HAMAP-Rule:MF_00138}. FT METAL 283 283 Magnesium or manganese. FT {ECO:0000256|HAMAP-Rule:MF_00138}. SQ SEQUENCE 421 AA; 45870 MW; 60D76753370945E2 CRC64; MLVNVLVIGS GGREHALSWK LSQSPKIETV FTAPGNGGTK NNVPIDVDDL DALADFAQKN NCFTVVGPEA PLAAGIVDKF NQKNLKIFGP AKDAAQLESS KIWAKDFMKR NDIPTARFEI FDDAEKAQDY IKSLDYNVVV KADGLAAGKG VIVCNSSDEA ISAIQTILVK KTFGDAGNRI IVEERIDGIE ASYIALSDGN VAIPMASSQD HKRIFDDDKG PNTGGMGAYS PTPIIDEDLA KKIQEKIIDK TIQSMKNEGI TFKGFLYAGI MIKDNEPYVL EYNVRMGDPE CQPITMRMDF DLYDYFVASA DGKLSSMPEI SWKDQYSVCV VLASEGYPES YPKNEEIVGF DSISDNAHVF HAGTKQTDGK ILSNGGRVLG VTALGDTLES AIANAYTASE KISWPHKFCR KDIGKKGLSY L // ID A9A4E2_NITMS Unreviewed; 437 AA. AC A9A4E2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12631.1}; GN OrderedLocusNames=Nmar_0735 {ECO:0000313|EMBL:ABX12631.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12631.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12631.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12631.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12631.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0735; -. DR EnsemblBacteria; ABX12631; ABX12631; Nmar_0735. DR KEGG; nmr:Nmar_0735; -. DR eggNOG; arCOG08801; Archaea. DR eggNOG; ENOG4111108; LUCA. DR HOGENOM; HOG000110130; -. DR OMA; HELEVTY; -. DR BioCyc; NMAR436308:GI3J-761-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 437 AA; 51336 MW; EB3A0EB917D584C0 CRC64; MQIFANTQVM RNNILDLLIE NRLEDDCYVE MLDYTIDLFE SRGLGRDYYG YHNINHELEV TYFSLLASKQ EKIKFTHDDI KYLYVAALFH DFDPEKSVDK PHEESVLKFI ATDRKLSQLI KTANIDLEII KVLILRTTYP WMGELKKNAE EQIKQCFQNS ELTRNNVEYQ KHIMDIGWYL TVVDRISGYA LGDFAKAMEM AKMNAHALAW RPSLIVRSAV AYFEELLNKE TDMVKPVLKV LSNEMRKNFF DTVLSFMRIR QQEITIQADC AYKNLKLIPT IECMSTRNEP EFINSLHDIL LELPRPLQFL DNFEKSVKDP DTIITTLRLN DENGEIVGYA KGGLLENYHL REEIRDENYG LGNTVFLEPI AVKMGYWGLK GGSEMRHMFV MQAHSKKFKY LTSFALRDVI NARIEKEQAE FVAKFDPERW DYYRIRI // ID A9A2E2_NITMS Unreviewed; 830 AA. AC A9A2E2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE SubName: Full=Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:ABX12853.1}; GN OrderedLocusNames=Nmar_0957 {ECO:0000313|EMBL:ABX12853.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12853.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12853.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12853.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12853.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E2; -. DR STRING; 436308.Nmar_0957; -. DR EnsemblBacteria; ABX12853; ABX12853; Nmar_0957. DR KEGG; nmr:Nmar_0957; -. DR eggNOG; arCOG02969; Archaea. DR eggNOG; COG0308; LUCA. DR HOGENOM; HOG000106482; -. DR KO; K13722; -. DR OMA; MEARTTH; -. DR BioCyc; NMAR436308:GI3J-985-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-KW. DR GO; GO:0008237; F:metallopeptidase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR InterPro; IPR024571; ERAP1-like_C_dom. DR InterPro; IPR001930; Peptidase_M1. DR InterPro; IPR014782; Peptidase_M1_N. DR PANTHER; PTHR11533; PTHR11533; 1. DR Pfam; PF11838; ERAP1_C; 1. DR Pfam; PF01433; Peptidase_M1; 1. DR PRINTS; PR00756; ALADIPTASE. PE 4: Predicted; KW Aminopeptidase {ECO:0000313|EMBL:ABX12853.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12853.1}; KW Protease {ECO:0000313|EMBL:ABX12853.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 378 Peptidase_M1. {ECO:0000259|Pfam:PF01433}. FT DOMAIN 505 816 ERAP1_C. {ECO:0000259|Pfam:PF11838}. SQ SEQUENCE 830 AA; 95015 MW; 1E6EB24707FF090B CRC64; MDVNPINYEL TFEPDLKKFT FLGTEIITVS CNKAINLITL DCAEIKIKSC TVKSGSKIIK STPKTDEKKE RLSIKLGEKI KGKATIHLEF QGILNDRLLG FYRSQYKQGG KTKYLATTQF EAADARRAFP CWDEPEAKAT FEISIIAENK FTAISNMPVQ SKKKIKNKTL YKFGKTPVVS TYLIYLGVGE FEYLTGKTGK VQIRVVTTKG NKSKGKYSLE LGKKLLTSYE KYFGIKYPLP KLDLIAIPDF AAGAMENWGA ITFRETILLY DPKTSSTRTK QFIAEVISHE IAHQWFGNLV TMKWWNDLWL NESFATFMAT KFVDKFYPEW NLWDQFIEDA MNTAMGLDAL KTTHPIDVKV KSPAEIREIF DAISYDKGGC VLRMLEHYVG EKNFRAGLKK YLSAFKYGNA QGQDLWDAIG KASKMPVSSM VNTWLKQPGF PQIDITQNNN DLIIKQNRFL MEPTKKTQKG LWHVPITYGL GKETKTKLLT KKSMTVKAPK GPGFVANIGR TGFYRVKYDD GILLDLKMLV DQKQIPHIDR WAIQNDLFAL CVAGKEDVEN YLDFSDAYFD EDSYLPQTNV ANNLNFLASL TFFEDFTEQI RSYAINYFRK ILSNLGWVPQ KTDKHTDAFM RGYAITVLGK FGDEHVLEQA QIKFKEFLKN PSSLHPDIRE PVFSIIARTG NAKTHSQFVT LYKKAKTTEE KLRFLGAMCS FKNEKLLIKT LQFSQTAEVR SQNMQLPIMK IAANPYGKKI LWPWLKKNWG KLSKKVGYGN PLFNRIVASI ALVADDSMEK DIKSFFKSHP TPGTERTQAQ TLEKIRIHSR FLRQMRKEFK // ID A9A2Q2_NITMS Unreviewed; 439 AA. AC A9A2Q2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 62. DE RecName: Full=ORC1-type DNA replication protein {ECO:0000256|HAMAP-Rule:MF_01407}; GN OrderedLocusNames=Nmar_1683 {ECO:0000313|EMBL:ABX13579.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13579.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13579.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13579.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in regulation of DNA replication. CC {ECO:0000256|HAMAP-Rule:MF_01407, ECO:0000256|SAAS:SAAS00552624}. CC -!- SIMILARITY: Belongs to the CDC6/cdc18 family. {ECO:0000256|HAMAP- CC Rule:MF_01407, ECO:0000256|SAAS:SAAS00552177}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13579.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Q2; -. DR STRING; 436308.Nmar_1683; -. DR EnsemblBacteria; ABX13579; ABX13579; Nmar_1683. DR KEGG; nmr:Nmar_1683; -. DR eggNOG; arCOG00467; Archaea. DR eggNOG; COG1474; LUCA. DR KO; K10725; -. DR OMA; DEIDHVQ; -. DR BioCyc; NMAR436308:GI3J-1728-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW. DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_01407; ORC1_type_DNA_replic_protein; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003959; ATPase_AAA_core. DR InterPro; IPR015163; Cdc6_C. DR InterPro; IPR014277; Orc1/Cdc6_arc. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF00004; AAA; 1. DR Pfam; PF09079; Cdc6_C; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR02928; TIGR02928; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_01407, KW ECO:0000256|SAAS:SAAS00437260}; KW Cell cycle {ECO:0000313|EMBL:ABX13579.1}; KW Cell division {ECO:0000313|EMBL:ABX13579.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA replication {ECO:0000256|HAMAP-Rule:MF_01407, KW ECO:0000256|SAAS:SAAS00438025}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01407, KW ECO:0000256|SAAS:SAAS00437260}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 61 219 AAA. {ECO:0000259|SMART:SM00382}. FT NP_BIND 73 77 ATP. {ECO:0000256|HAMAP-Rule:MF_01407}. FT BINDING 218 218 ATP. {ECO:0000256|HAMAP-Rule:MF_01407}. FT BINDING 230 230 ATP. {ECO:0000256|HAMAP-Rule:MF_01407}. SQ SEQUENCE 439 AA; 49643 MW; 8785732C71B48D6B CRC64; MEHYVDKKAL EKIVGDVRAQ NSIFSDKSFL DNLSVTNSII GRESESKKLV KFLLSYEKGL VVPLVSIYGR SGSGKSTIVQ FVCQNLDVDF CYVNLRKAKT VFGCINLILS ELGHENLKNA QGMNYAFGIF EKLILQKLEK SDNSIFVLCL DEFDTLFYDK RGKPSDFVYK IVVLVEKLRT LKRHMCIVTI SNKVLSEFNL DDRVVSRIGT SEIYFDSYSQ SDVLKIIRNR AKKSFLKKID DDVLQYCADI SSEEHGDARR AIDLLRTSGE IAGTENEKIS KKHVDKAVSQ LQKNQITTII SGGSYHFRLA CAALSRLTYI NDEGWHSTSD LFKQYQKIIS PDTRQISYRR FSEMLVELVN SGIAVSKTES KGRHGYGSQF KLSVDPELIG NSCFPDWWPS VVESKKKKEA AAQASKRLKL LSSGRRSSSL GNLYRTLGF // ID A9A187_NITMS Unreviewed; 525 AA. AC A9A187; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=NHL repeat containing protein {ECO:0000313|EMBL:ABX12373.1}; GN OrderedLocusNames=Nmar_0477 {ECO:0000313|EMBL:ABX12373.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12373.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12373.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12373.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12373.1; -; Genomic_DNA. DR ProteinModelPortal; A9A187; -. DR STRING; 436308.Nmar_0477; -. DR EnsemblBacteria; ABX12373; ABX12373; Nmar_0477. DR KEGG; nmr:Nmar_0477; -. DR eggNOG; arCOG03563; Archaea. DR eggNOG; ENOG410Y5G6; LUCA. DR BioCyc; NMAR436308:GI3J-497-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005576; C:extracellular region; IEA:InterPro. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR GO; GO:0009405; P:pathogenesis; IEA:InterPro. DR Gene3D; 2.120.10.30; -; 2. DR Gene3D; 2.150.10.10; -; 1. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. DR InterPro; IPR018511; Hemolysin-typ_Ca-bd_CS. DR InterPro; IPR001343; Hemolysn_Ca-bd. DR InterPro; IPR001258; NHL_repeat. DR InterPro; IPR013017; NHL_repeat_subgr. DR InterPro; IPR003995; RTX_toxin_determinant-A. DR InterPro; IPR011049; Serralysin-like_metalloprot_C. DR Pfam; PF00353; HemolysinCabind; 4. DR Pfam; PF01436; NHL; 2. DR PRINTS; PR01488; RTXTOXINA. DR SUPFAM; SSF51120; SSF51120; 1. DR PROSITE; PS00330; HEMOLYSIN_CALCIUM; 3. DR PROSITE; PS51125; NHL; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 525 AA; 56548 MW; C5E19012B5B68094 CRC64; MKTISLAVAV ITAILLSGTF APSSYALGDY DFLAGWGEFG ISTPGHLSHP QFIAVDDEGN AYISDLGNKR VQKFSSSGEF ILNFGESGKS SGQFHHPSGV AVDSDFVYVA DQNLHKIQKF TLDGVFVDEW GKYGNQDGQF KSPKDIAVDS DFLYVVDADN YRIQKFTTDG EFVLSFGSGG MNHDQFLILS GIAVDDDGNI YITDKGNRKI EKFTSDGILI KSYPLFGTNY VFAPTGITVD SDGKIFVINS AENRILYLEL DDNLRLSVFE QLGPFGNSFI APTDLTFGFQ GNLLIVDSAA HKVKSFETPF YDETKVFQTT EIIAPEITEG YESDDIDPTI MAPSDIKLEA TDLFTPVPIG DAVANDLQSG IKTILNNAPE AFSLGVNKVT WVAFDNAGNT AEDYQTVTVF ACGHVYSDYN MIVGTDENDV LLGTSGDDLI FGLEGNDIIS GLEGNDCIFG GDGDDIVYGD DGYDTISGNG GHDVLKGDSG SDVIYGGSGS DVLDGGSEND NCYDSLENVV LNCNE // ID A9A5P2_NITMS Unreviewed; 84 AA. AC A9A5P2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13047.1}; GN OrderedLocusNames=Nmar_1151 {ECO:0000313|EMBL:ABX13047.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13047.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13047.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13047.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13047.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13047; ABX13047; Nmar_1151. DR KEGG; nmr:Nmar_1151; -. DR BioCyc; NMAR436308:GI3J-1183-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 84 AA; 10202 MW; 8891AC44844616F6 CRC64; MEEYEITCVK QDFFGNITHV EVNGKELRSE TIVHWLRIKK YSFYTYKEDN KVYIYPKKNW LSGWFLTTDP YSDQANNLEF LCKC // ID A9A346_NITMS Unreviewed; 200 AA. AC A9A346; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=NADH dehydrogenase (Ubiquinone) 30 kDa subunit {ECO:0000313|EMBL:ABX12174.1}; GN OrderedLocusNames=Nmar_0278 {ECO:0000313|EMBL:ABX12174.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12174.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12174.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12174.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12174.1; -; Genomic_DNA. DR ProteinModelPortal; A9A346; -. DR STRING; 436308.Nmar_0278; -. DR EnsemblBacteria; ABX12174; ABX12174; Nmar_0278. DR KEGG; nmr:Nmar_0278; -. DR eggNOG; arCOG01551; Archaea. DR eggNOG; COG0852; LUCA. DR HOGENOM; HOG000109696; -. DR KO; K00332; -. DR OMA; AANWNER; -. DR BioCyc; NMAR436308:GI3J-288-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR InterPro; IPR001268; NADH_UbQ_OxRdtase_30kDa_su. DR InterPro; IPR020396; NADH_UbQ_OxRdtase_CS. DR Pfam; PF00329; Complex1_30kDa; 1. DR ProDom; PD001581; NADH_UbQ_OxRdtase_30kDa_su; 1. DR PROSITE; PS00542; COMPLEX1_30K; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ubiquinone {ECO:0000313|EMBL:ABX12174.1}. FT DOMAIN 70 199 Complex1_30kDa. FT {ECO:0000259|Pfam:PF00329}. SQ SEQUENCE 200 AA; 22323 MW; 20A6D18E372B6168 CRC64; MSSDSEKPAA AKPEEKAAPP KPAPKPAAKT EEKPVELPAF EKGISDKLVE KFGDKIEVDF VKEDRVGIKA SKESVHDVAQ FIRDDLHYDH AESVSGVDYP ADNEIEVVYH LGSYTDSSLA RQVLTLSTRA PRESSPIPGQ DSTKLPSLRD VFYSVEFGER EVFEMLGVYF DGHPDNRRLL LPEDWADLPP LRKDFAIKGR // ID A9A560_NITMS Unreviewed; 320 AA. AC A9A560; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABX11969.1}; GN OrderedLocusNames=Nmar_0069 {ECO:0000313|EMBL:ABX11969.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11969.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11969.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11969.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11969.1; -; Genomic_DNA. DR ProteinModelPortal; A9A560; -. DR STRING; 436308.Nmar_0069; -. DR EnsemblBacteria; ABX11969; ABX11969; Nmar_0069. DR KEGG; nmr:Nmar_0069; -. DR eggNOG; arCOG03032; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000110698; -. DR OMA; CFESERQ; -. DR BioCyc; NMAR436308:GI3J-69-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR001440; TPR_1. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF00515; TPR_1; 1. DR Pfam; PF13181; TPR_8; 1. DR SMART; SM00028; TPR; 4. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 3. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 185 307 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 320 AA; 36517 MW; 99344FFAE673875C CRC64; MEQEDHELLL PLVEEENICL PLPVNVVSKY WNIDLPMAEA TETAKKYAGF NGSILIEGIE SAERHGLICK IVHSSLNELK KIIDSGIPPI VILPGIPEVT QHASIITGYN NDEKTILHYI QTGNQEGEMQ EGAIPEDVFE KEWCEEGKLL IVLAPEDIIS SIKLENDSFD KSNRLCFESE RQNILKNYSE AINSLNQAIE LNPENSTALH LLGTMMNEQK SSECIKLYEK CLELNNRSYL TYNGLGNFYL KTNDFEKAED CYTKAIEINP KRSAKIYKNR AYLREQQNKN NDAKDDLKNY LKYFPKAPDR GIIEQAIREL // ID A9A1H1_NITMS Unreviewed; 154 AA. AC A9A1H1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 47. DE SubName: Full=Ribosomal protein L15e {ECO:0000313|EMBL:ABX13150.1}; GN OrderedLocusNames=Nmar_1254 {ECO:0000313|EMBL:ABX13150.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13150.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13150.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13150.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13150.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1H1; -. DR STRING; 436308.Nmar_1254; -. DR EnsemblBacteria; ABX13150; ABX13150; Nmar_1254. DR KEGG; nmr:Nmar_1254; -. DR eggNOG; arCOG04209; Archaea. DR eggNOG; COG1632; LUCA. DR HOGENOM; HOG000229584; -. DR KO; K02877; -. DR OMA; MERERPN; -. DR BioCyc; NMAR436308:GI3J-1287-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 3.40.1120.10; -; 1. DR InterPro; IPR024794; Rbsml_L15e_core_dom. DR InterPro; IPR000439; Ribosomal_L15e. DR InterPro; IPR012678; Ribosomal_L23/L15e_core_dom. DR PANTHER; PTHR11847; PTHR11847; 1. DR Pfam; PF00827; Ribosomal_L15e; 1. DR SMART; SM01384; Ribosomal_L15e; 1. DR SUPFAM; SSF54189; SSF54189; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX13150.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX13150.1}. SQ SEQUENCE 154 AA; 18107 MW; A158DA3E806B2A6E CRC64; MPDMPSRQDQ VWIRLWKENA PELRERVVGW RKQNAVTRID KPSRIQRARR LGYKAKQGVI VVRMRVGTGG MRKQRPTGGR RPKHLGVTRI KADDNMKTVA ERRVSERYPN MKLLGSYFIY KDGKHYWFEV ILADPDHPRV AQDKELTKRI SQTA // ID A9A548_NITMS Unreviewed; 196 AA. AC A9A548; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE RecName: Full=Probable cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00786}; DE EC=2.1.1.196 {ECO:0000256|HAMAP-Rule:MF_00786}; GN Name=cbiT {ECO:0000256|HAMAP-Rule:MF_00786}; GN OrderedLocusNames=Nmar_0057 {ECO:0000313|EMBL:ABX11957.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11957.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11957.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11957.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the methylation of C-15 in cobalt-precorrin-6B CC followed by the decarboxylation of C-12 to form cobalt-precorrin- CC 7. {ECO:0000256|HAMAP-Rule:MF_00786}. CC -!- CATALYTIC ACTIVITY: Cobalt-precorrin-6B + S-adenosyl-L-methionine CC = cobalt-precorrin-7 + S-adenosyl-L-homocysteine + CO(2). CC {ECO:0000256|HAMAP-Rule:MF_00786}. CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis; CC cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic CC route): step 8/10. {ECO:0000256|HAMAP-Rule:MF_00786}. CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. CC Archaeal-type CbiT family. {ECO:0000256|HAMAP-Rule:MF_00786}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11957.1; -; Genomic_DNA. DR ProteinModelPortal; A9A548; -. DR STRING; 436308.Nmar_0057; -. DR EnsemblBacteria; ABX11957; ABX11957; Nmar_0057. DR KEGG; nmr:Nmar_0057; -. DR eggNOG; arCOG00977; Archaea. DR eggNOG; COG2242; LUCA. DR HOGENOM; HOG000290407; -. DR KO; K02191; -. DR OMA; AVDPIFI; -. DR BioCyc; NMAR436308:GI3J-57-MONOMER; -. DR UniPathway; UPA00148; UER00229. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008276; F:protein methyltransferase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0046140; P:corrin biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.150; -; 1. DR HAMAP; MF_00786; CbiT; 1. DR InterPro; IPR023475; CbiT. DR InterPro; IPR014008; Cbl_synth_MTase_CbiT. DR InterPro; IPR025714; Methyltranfer_dom. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF13847; Methyltransf_31; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR02469; CbiT; 1. PE 3: Inferred from homology; KW Cobalamin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00786}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000256|HAMAP-Rule:MF_00786, KW ECO:0000313|EMBL:ABX11957.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00786}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00786, KW ECO:0000313|EMBL:ABX11957.1}. FT REGION 47 51 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00786}. FT BINDING 23 23 S-adenosyl-L-methionine. FT {ECO:0000256|HAMAP-Rule:MF_00786}. FT BINDING 71 71 S-adenosyl-L-methionine. FT {ECO:0000256|HAMAP-Rule:MF_00786}. FT BINDING 99 99 S-adenosyl-L-methionine; via amide FT nitrogen. {ECO:0000256|HAMAP- FT Rule:MF_00786}. SQ SEQUENCE 196 AA; 21455 MW; E8F8302E20718A7B CRC64; MWDYKTPGIP DEEFERTEKV PITKEEVRTV QISKARLKSG QTVYDIGCGS GSISVEAALQ IESSGKIIAI DYDQNAVDLT KKNLEKFELS NVSVILGNAK EKILELEEAD AIFVGGTGGD TKEIVELSEK KLKIGGRIVI GIILIETLYS VLQVMDTLQF KDVDITQVTI SKSRKTTTGT MMLARNPVTI ISATKA // ID A9A2C5_NITMS Unreviewed; 96 AA. AC A9A2C5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12836.1}; GN OrderedLocusNames=Nmar_0940 {ECO:0000313|EMBL:ABX12836.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12836.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12836.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12836.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12836.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0940; -. DR EnsemblBacteria; ABX12836; ABX12836; Nmar_0940. DR KEGG; nmr:Nmar_0940; -. DR eggNOG; arCOG10567; Archaea. DR eggNOG; ENOG41110I8; LUCA. DR BioCyc; NMAR436308:GI3J-968-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 96 AA; 10880 MW; 26858F2606C47837 CRC64; MMKNMSEEQL EALIVQTING AVATIPAYLD EIKENKEVLK VEDPKEFVYG IVMGMALGMS GAILSAQKEM PTPEDQIKVR DIVYKHIPEI RERIFN // ID A9A3R1_NITMS Unreviewed; 198 AA. AC A9A3R1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:ABX13323.1}; GN OrderedLocusNames=Nmar_1427 {ECO:0000313|EMBL:ABX13323.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13323.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13323.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13323.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13323.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3R1; -. DR STRING; 436308.Nmar_1427; -. DR EnsemblBacteria; ABX13323; ABX13323; Nmar_1427. DR KEGG; nmr:Nmar_1427; -. DR eggNOG; arCOG01952; Archaea. DR eggNOG; COG0009; LUCA. DR HOGENOM; HOG000076161; -. DR KO; K07566; -. DR OMA; NPSERAM; -. DR BioCyc; NMAR436308:GI3J-1462-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003725; F:double-stranded RNA binding; IEA:InterPro. DR Gene3D; 3.90.870.10; -; 1. DR InterPro; IPR017945; DHBP_synth_RibB-like_a/b_dom. DR InterPro; IPR006070; YrdC-like_dom. DR Pfam; PF01300; Sua5_yciO_yrdC; 1. DR SUPFAM; SSF55821; SSF55821; 1. DR TIGRFAMs; TIGR00057; TIGR00057; 1. DR PROSITE; PS51163; YRDC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 190 YrdC-like. {ECO:0000259|PROSITE:PS51163}. SQ SEQUENCE 198 AA; 22054 MW; B61D23EFA0B18490 CRC64; MKVNCDKEGI EKASKVIEDG GIVIFPTDTV YGIGCNPYSK ESAKKVYEIK SRDFSKPFPV LVYSKEIASQ IAEFDEISEK LVEKFWPGQL TILLKLKDEK LKESLNLSDK IALRVPNHKC TLSLLEKCHY LIGTSANVSG QPSFFDPQEC IKSVENYDVF VDGGTITSKG ESTIIAIEDG KIKIIREGSL SKEEILKV // ID A9A417_NITMS Unreviewed; 115 AA. AC A9A417; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12201.1}; GN OrderedLocusNames=Nmar_0305 {ECO:0000313|EMBL:ABX12201.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12201.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12201.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12201.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12201.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0305; -. DR EnsemblBacteria; ABX12201; ABX12201; Nmar_0305. DR KEGG; nmr:Nmar_0305; -. DR eggNOG; arCOG08781; Archaea. DR eggNOG; ENOG41110WM; LUCA. DR HOGENOM; HOG000109514; -. DR OMA; AFGWHFF; -. DR BioCyc; NMAR436308:GI3J-319-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 13389 MW; 4A3C195C69785B26 CRC64; MDERMHINVS AVDYDKTSKA LTRQLSLLEE MVHSEEDFVM TDSEFAFGWH FFVLSVNKSL VQKLVDMMGP DFDKLKGKGT EKKFLTWLTN NLENKSPRFK LAIKEEMESS KFGIF // ID A9A161_NITMS Unreviewed; 314 AA. AC A9A161; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 49. DE SubName: Full=NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABX12022.1}; GN OrderedLocusNames=Nmar_0122 {ECO:0000313|EMBL:ABX12022.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12022.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12022.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12022.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12022.1; -; Genomic_DNA. DR ProteinModelPortal; A9A161; -. DR STRING; 436308.Nmar_0122; -. DR EnsemblBacteria; ABX12022; ABX12022; Nmar_0122. DR KEGG; nmr:Nmar_0122; -. DR eggNOG; arCOG01369; Archaea. DR eggNOG; COG0451; LUCA. DR HOGENOM; HOG000168004; -. DR KO; K01784; -. DR OMA; LYWISSH; -. DR BioCyc; NMAR436308:GI3J-125-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF16363; GDP_Man_Dehyd; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 304 NAD(P)-bd_dom. FT {ECO:0000259|Pfam:PF16363}. SQ SEQUENCE 314 AA; 36020 MW; 07EB8F481DFD9CCC CRC64; MDIVKVLLTG ANGFIGSHLA DYLYNNYDIF LAVREFSNIS NINHLKDKVN LSKLDITNFK EIQNLLNEIK PDVVIHLAGE TSHSKSFEDP IHDVEVNSKS TLYFLESIRK LQLKCTFILG STFIVIGKPI SLPVNEKSVC IPTTIYATNR LSSEHFCKIY HQVYDMDCRI FRITNSFGPR EKTISSKNAV NFLIYQAYSG KEITVFNDGE FFRDLIYVKD VVSGIETIMK NGKNGELYWI SSHQKTWFKE FGKILHELTS SPLNFIPPPE YTKKVDVGNF LADNSKLKSL GWEPKYSLRD GIIETLDYFK NKKL // ID A9A1W2_NITMS Unreviewed; 174 AA. AC A9A1W2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12083.1}; GN OrderedLocusNames=Nmar_0187 {ECO:0000313|EMBL:ABX12083.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12083.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12083.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12083.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12083.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12083; ABX12083; Nmar_0187. DR KEGG; nmr:Nmar_0187; -. DR eggNOG; arCOG08825; Archaea. DR eggNOG; ENOG41110NP; LUCA. DR HOGENOM; HOG000110897; -. DR OMA; GGISESH; -. DR BioCyc; NMAR436308:GI3J-189-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 141 164 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 174 AA; 19679 MW; 87654FC4A6B4D474 CRC64; MAKKRSVLIL SFLILFSIPG LGDAFAHSMF NSAEQSNGGY RVQVATAPEF PQIGEPSQFL VKVTEGFDYE DVDRFTMGMK IFYNGKQVDA IQPTSVEGSH WDFDYVWRNS GNHIVDVYLY DMPNNPEPLS FKFNMGTQSP FGQIFIIAIT IGALSMTGVF LYIYMPKIFK KSRL // ID A9A561_NITMS Unreviewed; 172 AA. AC A9A561; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12260.1}; GN OrderedLocusNames=Nmar_0364 {ECO:0000313|EMBL:ABX12260.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12260.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12260.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12260.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12260.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12260; ABX12260; Nmar_0364. DR KEGG; nmr:Nmar_0364; -. DR eggNOG; arCOG08730; Archaea. DR eggNOG; ENOG41110J6; LUCA. DR BioCyc; NMAR436308:GI3J-380-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 172 AA; 19609 MW; CC02966E2C1832B3 CRC64; MADAKFSWYG NFYGIAWRTH AGNPIAVPLF VKQDESQKIA DIIKTWKPKD IHLTFIEKDD GNYAICIYQE ADSGENIGLY RSGMSQTGTY GKIKQMIEKK SSMWNPLRAY IQIVYATDPA DSKTYQNMTD YIIIGRLEII SEDALKSKRF VIEKDAHTTL GGYDVENTTD EN // ID A9A3R7_NITMS Unreviewed; 70 AA. AC A9A3R7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13329.1}; GN OrderedLocusNames=Nmar_1433 {ECO:0000313|EMBL:ABX13329.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13329.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13329.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13329.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13329.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1433; -. DR EnsemblBacteria; ABX13329; ABX13329; Nmar_1433. DR KEGG; nmr:Nmar_1433; -. DR eggNOG; ENOG4102U9F; Archaea. DR eggNOG; ENOG4110ZKD; LUCA. DR BioCyc; NMAR436308:GI3J-1468-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 70 AA; 7444 MW; 96BA89CC972DB0B8 CRC64; MLKRPTIPMD SRIALFTILA IAAVFAMAVP MDSVYAQTTD ILPDGEGKDG EGKSCPFKNK TASVNTGLNI // ID A9A5W5_NITMS Unreviewed; 98 AA. AC A9A5W5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13120.1}; GN OrderedLocusNames=Nmar_1224 {ECO:0000313|EMBL:ABX13120.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13120.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13120.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13120.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13120.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1224; -. DR EnsemblBacteria; ABX13120; ABX13120; Nmar_1224. DR KEGG; nmr:Nmar_1224; -. DR eggNOG; arCOG07192; Archaea. DR eggNOG; ENOG41125CH; LUCA. DR HOGENOM; HOG000106654; -. DR OMA; DEQNKEM; -. DR BioCyc; NMAR436308:GI3J-1257-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 98 AA; 11435 MW; C41E25B6D5E1AA4E CRC64; MAVPIRNTVF DKIRDAGSLT DVDLYKILTK EGFTMAEAKF NKILLDLEIL GLIKVSWITK DERRIEVFVE KEEVDEVDEQ NKEMMEKDYE ASFPGFEK // ID A9A5X2_NITMS Unreviewed; 200 AA. AC A9A5X2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; DE EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278}; DE AltName: Full=IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; DE AltName: Full=IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; DE AltName: Full=ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; GN Name=hisH {ECO:0000256|HAMAP-Rule:MF_00278}; GN OrderedLocusNames=Nmar_1554 {ECO:0000313|EMBL:ABX13450.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13450.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13450.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13450.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: IGPS catalyzes the conversion of PRFAR and glutamine to CC IGP, AICAR and glutamate. The HisH subunit provides the glutamine CC amidotransferase activity that produces the ammonia necessary to CC HisF for the synthesis of IGP and AICAR. {ECO:0000256|HAMAP- CC Rule:MF_00278}. CC -!- CATALYTIC ACTIVITY: 5-[(5-phospho-1-deoxyribulos-1- CC ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4- CC carboxamide + L-glutamine = imidazole-glycerol phosphate + 5- CC aminoimidazol-4-carboxamide ribonucleotide + L-glutamate + H(2)O. CC {ECO:0000256|HAMAP-Rule:MF_00278}. CC -!- PATHWAY: Amino-acid biosynthesis; L-histidine biosynthesis; L- CC histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9. CC {ECO:0000256|HAMAP-Rule:MF_00278}. CC -!- SUBUNIT: Heterodimer of HisH and HisF. {ECO:0000256|HAMAP- CC Rule:MF_00278}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00278}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000256|HAMAP-Rule:MF_00278}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13450.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X2; -. DR STRING; 436308.Nmar_1554; -. DR MEROPS; C26.965; -. DR EnsemblBacteria; ABX13450; ABX13450; Nmar_1554. DR KEGG; nmr:Nmar_1554; -. DR eggNOG; arCOG00089; Archaea. DR eggNOG; COG0118; LUCA. DR HOGENOM; HOG000025030; -. DR KO; K02501; -. DR OMA; MIFIADY; -. DR BioCyc; NMAR436308:GI3J-1597-MONOMER; -. DR UniPathway; UPA00031; UER00010. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0000107; F:imidazoleglycerol-phosphate synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_00278; HisH; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR InterPro; IPR010139; Imidazole-glycPsynth_HisH. DR Pfam; PF00117; GATase; 1. DR PIRSF; PIRSF000495; Amidotransf_hisH; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR01855; IMP_synth_hisH; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00278}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00278}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00278, KW ECO:0000313|EMBL:ABX13450.1}; KW Histidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00278}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00278, KW ECO:0000313|EMBL:ABX13450.1}. FT DOMAIN 3 200 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. FT ACT_SITE 78 78 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00278, FT ECO:0000256|PIRSR:PIRSR000495-1}. FT ACT_SITE 179 179 {ECO:0000256|HAMAP-Rule:MF_00278, FT ECO:0000256|PIRSR:PIRSR000495-1}. FT ACT_SITE 181 181 {ECO:0000256|HAMAP-Rule:MF_00278, FT ECO:0000256|PIRSR:PIRSR000495-1}. SQ SEQUENCE 200 AA; 22216 MW; 56F1FED9A1417F2F CRC64; MTKIAIFDYG AGNIFSLKNA LEKQNATVEV QTKVDMLKGY DGIFLPGVGN FDPAIQSINR DSVDFLDIVG DTPVFGICLG MEMFFDKSQE GKEEGLGIIN GDVIVLPDTL KVPHMGWNAL EIKKENKILE GVENGSWVYF VHSYRANPTT QDVIVAESDY DVKVPAIVQK DNYFGTQFHP EKSGDVGALM LKNFLRECKK // ID A9A5H4_NITMS Unreviewed; 162 AA. AC A9A5H4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12685.1}; GN OrderedLocusNames=Nmar_0789 {ECO:0000313|EMBL:ABX12685.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12685.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12685.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12685.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12685.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5H4; -. DR STRING; 436308.Nmar_0789; -. DR EnsemblBacteria; ABX12685; ABX12685; Nmar_0789. DR KEGG; nmr:Nmar_0789; -. DR eggNOG; arCOG10550; Archaea. DR eggNOG; ENOG4111130; LUCA. DR BioCyc; NMAR436308:GI3J-815-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.1240; -; 1. DR InterPro; IPR029051; DUF4352. DR InterPro; IPR029050; Immunoprotect_excell_Ig-like. DR Pfam; PF11611; DUF4352; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 37 145 DUF4352. {ECO:0000259|Pfam:PF11611}. SQ SEQUENCE 162 AA; 18196 MW; 29EAF7E7FD2EA030 CRC64; MAGIGVVIVI GGILVSMGAA MFMYTQYQTN FIETYAGETV TVGPVEYVIT FEGTHEGDKE TQPENTFVMI GIAAKYIGDE ERTLLSGGQF YIVDEKEQKH EAVYGEFSSK DLLLEWLEPN KPVEKTTQFD IPFDEEKMYK IIIRPQKEQS TVDTALICIT NC // ID A9A130_NITMS Unreviewed; 253 AA. AC A9A130; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=ABC-2 type transporter {ECO:0000313|EMBL:ABX11991.1}; GN OrderedLocusNames=Nmar_0091 {ECO:0000313|EMBL:ABX11991.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11991.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11991.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11991.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11991.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0091; -. DR EnsemblBacteria; ABX11991; ABX11991; Nmar_0091. DR KEGG; nmr:Nmar_0091; -. DR eggNOG; arCOG01467; Archaea. DR eggNOG; COG0842; LUCA. DR HOGENOM; HOG000110776; -. DR KO; K01992; -. DR OMA; FHRIDYL; -. DR BioCyc; NMAR436308:GI3J-92-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0006810; P:transport; IEA:InterPro. DR InterPro; IPR013525; ABC_2_trans. DR InterPro; IPR000412; ABC_2_transport. DR Pfam; PF01061; ABC2_membrane; 1. DR PIRSF; PIRSF006648; DrrB; 1. DR PRINTS; PR00164; ABC2TRNSPORT. DR PROSITE; PS51012; ABC_TM2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 80 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 101 128 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 134 160 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 172 191 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 225 248 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 14 219 ABC2_membrane. FT {ECO:0000259|Pfam:PF01061}. SQ SEQUENCE 253 AA; 27813 MW; A9F3AF29E54BACDE CRC64; MNPIIRLVNR NLTISLNPGF LIWQVIFPLI YIFVAGFAYA PLIQNVPFGA KDLDYPAFLA SGMIGFNIMN STLVSGIIIW NDRRHGMFEQ IMSGPFTRSH YILSNICTIG IIGLVSASLI ALVGYPVFFE SVEFSLITIP VIVFGAITGS VLFGSLASII STRLRSSEGF NVIINTVFLF FAFVSSAFYP ADNVPEPLRT AFYLNPLTYL VDVIRAGIFG NITEFVIVEM LVLVGIASAL FIVASKLLTK LDF // ID A9A1N1_NITMS Unreviewed; 270 AA. AC A9A1N1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13546.1}; GN OrderedLocusNames=Nmar_1650 {ECO:0000313|EMBL:ABX13546.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13546.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13546.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13546.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13546.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1N1; -. DR STRING; 436308.Nmar_1650; -. DR EnsemblBacteria; ABX13546; ABX13546; Nmar_1650. DR KEGG; nmr:Nmar_1650; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR HOGENOM; HOG000110039; -. DR BioCyc; NMAR436308:GI3J-1695-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR027560; PEFG-CTERM. DR SUPFAM; SSF49503; SSF49503; 1. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 242 262 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 270 AA; 27825 MW; A9E7C915D946838C CRC64; MKTIAICSLF VLFAMVAGLV ATTPAAFANH PEVTIVPASG SGAPGCEETA DGCYIPSTAT VDVGGVVIMS NTDTAAHTYT SGTPDDGPDG IFDTSLLMAG SSFEWSPTEE GEYPYFCMVH PWMQGTIIAA AAGADDHGDD GGELMVSIAD SQVLGGTQIE LTFSELHVNY DITATQGGEV VLQETNQHAM ESTATHQIDA LGADDNPIDV EIVSLGIGAP GAEADWTGPT GVVATAKVVP EFGTIVMMVL TVAIISIVAV TAKSRVIPRF // ID A9A1Z0_NITMS Unreviewed; 206 AA. AC A9A1Z0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 46. DE SubName: Full=Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABX12403.1}; GN OrderedLocusNames=Nmar_0507 {ECO:0000313|EMBL:ABX12403.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12403.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12403.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12403.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12403.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Z0; -. DR STRING; 436308.Nmar_0507; -. DR EnsemblBacteria; ABX12403; ABX12403; Nmar_0507. DR KEGG; nmr:Nmar_0507; -. DR eggNOG; arCOG01860; Archaea. DR eggNOG; COG1418; LUCA. DR HOGENOM; HOG000034253; -. DR KO; K06950; -. DR OMA; CVAVEKN; -. DR BioCyc; NMAR436308:GI3J-528-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 1.10.3210.10; -; 2. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR006674; HD_domain. DR InterPro; IPR006675; HDIG_dom. DR Pfam; PF01966; HD; 1. DR SMART; SM00471; HDc; 1. DR TIGRFAMs; TIGR00277; HDIG; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12403.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 135 HDc. {ECO:0000259|SMART:SM00471}. SQ SEQUENCE 206 AA; 23890 MW; D2364FD851E287EE CRC64; MKVLELLKKD VKKIMENDPA HDFEHIMRVY KNGQKICKKE KANEKLVLSA ALLHDIVSYP KSDKRSKMSS IESAKKSKQI LKKYDFDEHE ITIISDAIRD HSFSQKKIPK TIEGKILQDS DRLDALGAIG IARVFATGGS LKRPFYNIDD PFCKNRIPDD KTWTVDHFFQ KLLKLESLMN TKSGKIEAKR RTRILKEYIK QLKQEV // ID A9A2K7_NITMS Unreviewed; 116 AA. AC A9A2K7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13246.1}; GN OrderedLocusNames=Nmar_1350 {ECO:0000313|EMBL:ABX13246.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13246.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13246.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13246.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13246.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13246; ABX13246; Nmar_1350. DR KEGG; nmr:Nmar_1350; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000023857; -. DR BioCyc; NMAR436308:GI3J-1384-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 116 AA; 13456 MW; 9625FCF1D14C49DF CRC64; MDYERICKDI LHFDSKIRFC GVTNAKSELI ASISKNPEEK FLSKDEMMMS IHYTLDRSEK HTNLSYKIGN EKSAVIEYDK VTMITIPLEK KELLLISTEP EADYYKIIAK ARESLS // ID A9A358_NITMS Unreviewed; 452 AA. AC A9A358; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:ABX12487.1}; GN OrderedLocusNames=Nmar_0591 {ECO:0000313|EMBL:ABX12487.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12487.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12487.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12487.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12487.1; -; Genomic_DNA. DR ProteinModelPortal; A9A358; -. DR STRING; 436308.Nmar_0591; -. DR EnsemblBacteria; ABX12487; ABX12487; Nmar_0591. DR KEGG; nmr:Nmar_0591; -. DR eggNOG; arCOG00322; Archaea. DR eggNOG; COG0312; LUCA. DR KO; K03592; -. DR OMA; ANMESIA; -. DR BioCyc; NMAR436308:GI3J-614-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008237; F:metallopeptidase activity; IEA:InterPro. DR InterPro; IPR002510; TldD/PmbA. DR Pfam; PF01523; PmbA_TldD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 452 AA; 49917 MW; 4B45ED1E9AA220F7 CRC64; MPALEKALQH SKKKQIDECE IVSVKKNITT VRITDSEIAE IKQNFDESFG IRIIHGKKIA SIQTTKKEDI EKAIDSAFLT IPNLKPREFW QGLPTTVSST NLEGTFDEKL DKISGSEMMD ITQSMINSAN SDKIDTITGS LNIVSELFEI ENSNGLFFKD KSTYISGIIN AESEHGILPV SGIGHASGRI LANFATEQIG EDAKKMCIES INPKKIDSDT YDIIFEPYSV GELLAFVVSS NFDFKTFSEK KSCFSNNFDD EIAVDDFNLT DDPHMADGVG TKVVDDEGVI TQKNNLIEKG VFKNTFSNLF DSYKENKKST GNGARIGSPM GRSSEPISIS APHNLKIDSG KTSQEDMIKD TKHGILVGRL WYTYAVNPIK GDFSCTARSG VRIIEDGEIK NPGKSVRIIH NLPTMLKNIS EIGNNQQNVI QWASLPSITP SIKAEKIKVI TI // ID A9A3B9_NITMS Unreviewed; 322 AA. AC A9A3B9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 59. DE SubName: Full=Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABX12548.1}; GN OrderedLocusNames=Nmar_0652 {ECO:0000313|EMBL:ABX12548.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12548.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12548.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12548.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12548.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3B9; -. DR STRING; 436308.Nmar_0652; -. DR EnsemblBacteria; ABX12548; ABX12548; Nmar_0652. DR KEGG; nmr:Nmar_0652; -. DR eggNOG; arCOG00184; Archaea. DR eggNOG; COG4608; LUCA. DR KO; K02032; -. DR OMA; HADARCH; -. DR BioCyc; NMAR436308:GI3J-677-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0015833; P:peptide transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR013563; Oligopep_ABC_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1. DR Pfam; PF00005; ABC_tran; 1. DR Pfam; PF08352; oligo_HPY; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01727; oligo_HPY; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 256 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 322 AA; 36895 MW; AE5ABAB921AA234E CRC64; MLDEILKIEH LKKYFTKKGM FGKESDTVRA TDDISFSVKK GEVFVLAGES GSGKSTIAKL ILRSIQPDSG KIFFEGQEID NNPENLQKIR MGCQMIHQDP YDSINPRMKI GDIVSEPLEI HNIGNKDKRR RRVIEVLHEV KLEPAEEIIK KYPHMLSGGQ RQRVVLARAL SLKPKVILAD EPVSMLDVSI RAEMLELMHE LQKKYNISFI YITHDLATAR YFGQRIGILY LGKIVEVGPI DQVLLSPKHP YTQALIDAIS EPNPDNLHKD KKIRINEPSD IDILHGCRFR NRCPYVIDKC ETEPKFEKID DEHYSACHVK IN // ID A9A4F0_NITMS Unreviewed; 101 AA. AC A9A4F0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12639.1}; GN OrderedLocusNames=Nmar_0743 {ECO:0000313|EMBL:ABX12639.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12639.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12639.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12639.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12639.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4F0; -. DR STRING; 436308.Nmar_0743; -. DR EnsemblBacteria; ABX12639; ABX12639; Nmar_0743. DR KEGG; nmr:Nmar_0743; -. DR eggNOG; arCOG04373; Archaea. DR eggNOG; COG0011; LUCA. DR HOGENOM; HOG000224438; -. DR OMA; MGTQIEA; -. DR BioCyc; NMAR436308:GI3J-769-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.930; -; 1. DR InterPro; IPR029756; MTH1187/YkoF-like. DR InterPro; IPR002767; Thiamine_BP. DR Pfam; PF01910; Thiamine_BP; 1. DR SUPFAM; SSF89957; SSF89957; 1. DR TIGRFAMs; TIGR00106; TIGR00106; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 96 Thiamine_BP. {ECO:0000259|Pfam:PF01910}. SQ SEQUENCE 101 AA; 11495 MW; CA09968B6D8A3590 CRC64; MIHAEISVYP MATKTTSASF YIAKAIESIQ KIENLKYEIN PMGTILESDD METINKATKQ MTETVHNLGI DRVEVIIKID SRKDKQQSGE EKLESIKKHL N // ID A9A4H0_NITMS Unreviewed; 270 AA. AC A9A4H0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12659.1}; GN OrderedLocusNames=Nmar_0763 {ECO:0000313|EMBL:ABX12659.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12659.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12659.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12659.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12659.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0763; -. DR EnsemblBacteria; ABX12659; ABX12659; Nmar_0763. DR KEGG; nmr:Nmar_0763; -. DR eggNOG; arCOG08714; Archaea. DR eggNOG; ENOG411107B; LUCA. DR HOGENOM; HOG000107500; -. DR OMA; YLTEHIG; -. DR BioCyc; NMAR436308:GI3J-789-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 51 70 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 98 119 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 168 189 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 201 223 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 229 252 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 270 AA; 29129 MW; 2CB46287D41557CD CRC64; MEQSNSISKG KKLIVIGFVA IAILFIIYAR YQDSELLTPS AIEAIQRIAY LFYVALIASF GAIALGMYRY HKGKIERNEK DLSTIIALIT WNKKSRKIFV ATFVGYGIFF ALVSGTLVYQ PEVTFSIHYG AEIPSGFIAP CCGELGYMPK VIIYLTEHIG LQIIPINLVL QIIVSYLVGL NTSIAVSAYT FSKQGSGMSG IGAVVGAFIA CPTCAGTFFS LFIGTASGIA LSLALAQLQT LLIAVSIPIL LATPYIMAKK LRNPDGSCKI // ID A9A4T0_NITMS Unreviewed; 547 AA. AC A9A4T0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Phenylalanyl-tRNA synthetase, beta subunit {ECO:0000313|EMBL:ABX13384.1}; DE EC=6.1.1.20 {ECO:0000313|EMBL:ABX13384.1}; GN OrderedLocusNames=Nmar_1488 {ECO:0000313|EMBL:ABX13384.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13384.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13384.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13384.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13384.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4T0; -. DR STRING; 436308.Nmar_1488; -. DR EnsemblBacteria; ABX13384; ABX13384; Nmar_1488. DR KEGG; nmr:Nmar_1488; -. DR eggNOG; arCOG00412; Archaea. DR eggNOG; COG0072; LUCA. DR HOGENOM; HOG000105094; -. DR KO; K01890; -. DR OMA; NREPCIS; -. DR BioCyc; NMAR436308:GI3J-1526-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0004826; F:phenylalanine-tRNA ligase activity; IEA:UniProtKB-EC. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0006432; P:phenylalanyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 3.30.56.20; -; 1. DR InterPro; IPR005146; B3/B4_tRNA-bd. DR InterPro; IPR009061; DNA-bd_dom_put. DR InterPro; IPR004531; Phe-tRNA-synth_IIc_bsu_arc. DR InterPro; IPR005147; tRNA_synthase_B5-dom. DR Pfam; PF03483; B3_4; 1. DR Pfam; PF03484; B5; 1. DR SMART; SM00873; B3_4; 1. DR SMART; SM00874; B5; 1. DR SUPFAM; SSF46955; SSF46955; 1. DR TIGRFAMs; TIGR00471; pheT_arch; 1. DR PROSITE; PS51483; B5; 1. PE 4: Predicted; KW Aminoacyl-tRNA synthetase {ECO:0000313|EMBL:ABX13384.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX13384.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 270 345 B5. {ECO:0000259|PROSITE:PS51483}. SQ SEQUENCE 547 AA; 59984 MW; 2EEE251BFFD26F58 CRC64; MPVVELSYSS LQKLIGKASK KQIADFLPFL GLDIESEDKD LVRIEYSPNR PDYSTDFGIA LGMQGLLGIK TGAIKLKIKK SKQYSVSVKP DVVKVRPFVT GIVAKNGKID DKTIKQLMAM QEDLHFGIGR KRKKSSIGIH DLDKIQFPLV YTTTDRKHKF IPLNSEKELS ITEILDTTEV GKDYGSLLTN FSKMPVIIDA NQNTVSFPPI INAAVTTVTT KTKNLFVEVT GINKDDAEDM LSVVATILQS AGFSLETVTI SGAKNTTPKL AERKMTVSPS LINQTLGLDL KTPKIISSLK KSRLDAVSKG KNIVCTIPAY RFDIFGPMDL VEEVALGYGI QNLEPTLSPS QTLGQTNPVS LELKSLNQTM IGLGYLEALN SSLTSKRVLY EMANREPKTI ISVLDSKSQE HTILRDSILP GLLENLSKNI HESYPQKLFE TGTVFSAGNP ISETINLSGI SAHQDANFTE IKSVLQSALK TGFDLEIQTK TTQHPTFEKG HCADVIINGK PVGVIGEINS KIIENYKIRV PVVGFEISLS ESILKSL // ID A9A5L5_NITMS Unreviewed; 243 AA. AC A9A5L5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12726.1}; GN OrderedLocusNames=Nmar_0830 {ECO:0000313|EMBL:ABX12726.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12726.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12726.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12726.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12726.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0830; -. DR EnsemblBacteria; ABX12726; ABX12726; Nmar_0830. DR KEGG; nmr:Nmar_0830; -. DR eggNOG; ENOG4102UA7; Archaea. DR eggNOG; ENOG4110ZJP; LUCA. DR BioCyc; NMAR436308:GI3J-857-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 243 AA; 27897 MW; 30928E24203902B3 CRC64; MKREIIAGIF ILSFGLFFST NTYAEVDPLT EIPFLQTGAI NTDENQFQIS NDIQIREFSN GKIIRMSGHT IEGFPYITYS KIIDDEIKTH GIIYVGGEFM PLSFEEKTTQ ENITEEDTME KEDDLQILVQ YTQRVYSKQY ASIEIKTYDP QQNKLNDFNL NYGHLSNINI NVMVLDENNE EFHSANGITN DRGLFETEFY IPERYPRENL TVTITAEDND SRSSKLLQMF TLGETPSDGS SSP // ID A9A5F3_NITMS Unreviewed; 82 AA. AC A9A5F3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12664.1}; GN OrderedLocusNames=Nmar_0768 {ECO:0000313|EMBL:ABX12664.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12664.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12664.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12664.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12664.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12664; ABX12664; Nmar_0768. DR KEGG; nmr:Nmar_0768; -. DR eggNOG; arCOG10548; Archaea. DR eggNOG; ENOG41111EC; LUCA. DR BioCyc; NMAR436308:GI3J-794-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 82 AA; 9751 MW; 2A994FDFE9CB8552 CRC64; MVNFEKLYKR VALQVIDRCH GGIRIKRHGR VIQVYDPKRH IWSDGLVGLV IKEECKLANL RDWEIAHVRR HIIEELLSRP DD // ID A9A387_NITMS Unreviewed; 581 AA. AC A9A387; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Membrane protein-like protein {ECO:0000313|EMBL:ABX12516.1}; GN OrderedLocusNames=Nmar_0620 {ECO:0000313|EMBL:ABX12516.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12516.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12516.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12516.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12516.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0620; -. DR EnsemblBacteria; ABX12516; ABX12516; Nmar_0620. DR KEGG; nmr:Nmar_0620; -. DR eggNOG; arCOG04351; Archaea. DR eggNOG; COG3356; LUCA. DR HOGENOM; HOG000108491; -. DR KO; K08979; -. DR OMA; DCHNAMG; -. DR BioCyc; NMAR436308:GI3J-644-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR019204; DUF2070_membrane. DR Pfam; PF09843; DUF2070; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 72 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 110 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 116 133 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 163 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 175 192 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 16 577 DUF2070. {ECO:0000259|Pfam:PF09843}. SQ SEQUENCE 581 AA; 64953 MW; 384D6C095B84254C CRC64; MEKESDDVSN IHNRFSLTLV NPSSHYFSLV VSLGVAAIIS LATLLGYLDS SIEEAWYIVP AVMTVLFLTQ LLDTRFTKKK EYSKSLHSSL FANMLWAATV LLGLLASFVL SKETSLFFVT FGMFLFASFR IGIYTTTLGV SLKKAWAICF VQPLAMFAVL IPQHLWSPMF SDPMTLFYGI SFMIIASVWS VLTDRAGRPG MESTHKTIQA YLASQKNDHT EAEEIMEERS SETKVATSQI RLSANDGGKE FRMVLPEIHP GPYHPVGGSN IPYLIYKNLS SSAMVMHSIS DHALNLPSKN EVENYLKNLE NSKVKEEGLQ CTEPVTVQIN KARVIGLLFG KNPLLFLSLS PHGMEDIPNY MKNDIEQYAK NRNYSKPLIV DCHNAMGEEI SSEDGEDMLK AAKSCLDTLI TKDSFPIEFG YANSDDMDVW TEDLGMGGLG IVCLKINEKK YFLGWADANN MENGVREKII DLFARKDLQL LEICTSDTHY APVKARNRNG YYQLGLITSA DKLAKWFLEI ASNAESNTST AKFEILENET EVKVMGQGIY EDYSKALDNS LKITKGFLIG GVIFFITSLF L // ID A9A635_NITMS Unreviewed; 197 AA. AC A9A635; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ABX13513.1}; GN OrderedLocusNames=Nmar_1617 {ECO:0000313|EMBL:ABX13513.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13513.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13513.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13513.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13513.1; -; Genomic_DNA. DR ProteinModelPortal; A9A635; -. DR STRING; 436308.Nmar_1617; -. DR EnsemblBacteria; ABX13513; ABX13513; Nmar_1617. DR KEGG; nmr:Nmar_1617; -. DR eggNOG; arCOG04713; Archaea. DR eggNOG; COG0307; LUCA. DR HOGENOM; HOG000151758; -. DR KO; K00793; -. DR OMA; GRAIEFW; -. DR BioCyc; NMAR436308:GI3J-1661-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR GO; GO:0004746; F:riboflavin synthase activity; IEA:InterPro. DR GO; GO:0009231; P:riboflavin biosynthetic process; IEA:InterPro. DR Gene3D; 2.40.30.20; -; 2. DR InterPro; IPR023366; ATPase_asu-like. DR InterPro; IPR001783; Lumazine-bd. DR InterPro; IPR026017; Lumazine-bd_dom. DR InterPro; IPR017938; Riboflavin_synthase-like_b-brl. DR PANTHER; PTHR21098; PTHR21098; 1. DR Pfam; PF00677; Lum_binding; 2. DR PIRSF; PIRSF000498; Riboflavin_syn_A; 1. DR SUPFAM; SSF63380; SSF63380; 2. DR TIGRFAMs; TIGR00187; ribE; 1. DR PROSITE; PS51177; LUMAZINE_BIND; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 102 Lumazine-binding. FT {ECO:0000259|PROSITE:PS51177}. FT DOMAIN 103 197 Lumazine-binding. FT {ECO:0000259|PROSITE:PS51177}. SQ SEQUENCE 197 AA; 21438 MW; 8ED34C15A1D472B4 CRC64; MILMFTGIVK GIGKVEKISK NTKNRSAVQM TVNLGKHAKG LKIGQSVALN GVCLTATKLS KSSCIFEMIE ETTKKTDLGN LEVGGIVNIE RSLKAGDRLE GHFVLGHVDG VGIIKKIQKK PKEVQVWFEV PKKLAKYVVK KGSIAVDGIS LTVTDIKKNL ASVSLIPHTI EVTNFQTKKV GDKVNIETDI LGKYILK // ID A9A3H3_NITMS Unreviewed; 307 AA. AC A9A3H3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12905.1}; GN OrderedLocusNames=Nmar_1009 {ECO:0000313|EMBL:ABX12905.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12905.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12905.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12905.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12905.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1009; -. DR EnsemblBacteria; ABX12905; ABX12905; Nmar_1009. DR KEGG; nmr:Nmar_1009; -. DR eggNOG; arCOG10568; Archaea. DR eggNOG; ENOG41111RC; LUCA. DR BioCyc; NMAR436308:GI3J-1037-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 43 64 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 84 108 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 120 138 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 150 169 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 181 202 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 232 300 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 307 AA; 35876 MW; 635ED5A19B7DA6D3 CRC64; MFALIFGLFT FAGITIDENI ITYFTDFENI TSQFGTDVSF TDLIGYSIGM VVYGIFIWNF YRFLARREMI PLRLKKYETD GKKITSIIVY FVKYVVVFPL VVLVWFVVYS TFLFFMAPDL PIEHVFLIVI SLVVTVRISA YYKEDLAKDF AKLIPFALLG IFLTSSIFFT AEDVAERTFG FLPFLGKILG FVTYAIIVEA FLRILFLIKR KILPVAEEKL EEQIEKQIDE KIKIHVEKIE DKQEDLEKKI DKETDEIEKK IEKETENIEK KIEEETNDIE KKIEKETDDV EKKLQDEVKK SKDNNGT // ID A9A1M8_NITMS Unreviewed; 531 AA. AC A9A1M8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13543.1}; GN OrderedLocusNames=Nmar_1647 {ECO:0000313|EMBL:ABX13543.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13543.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13543.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13543.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13543.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1647; -. DR EnsemblBacteria; ABX13543; ABX13543; Nmar_1647. DR KEGG; nmr:Nmar_1647; -. DR eggNOG; arCOG08812; Archaea. DR eggNOG; ENOG4111107; LUCA. DR HOGENOM; HOG000110442; -. DR OMA; ENELILH; -. DR BioCyc; NMAR436308:GI3J-1692-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 531 AA; 60331 MW; 16A230C938311BC9 CRC64; MEKKFVKKIQ TSGHNLKNLF LLLLLPLLFV FTFDSAFGHG VGSETFPPVN LDGKQVTVEV SSSQSDPEAD DDQQISISLI DFDSKITLRD VTFHIKSEKG NQFLFEQEFK TDNGFLVFNF VSEETDSIVI EEETGANFFG SILGLDSRLI HVKGPKLSEG GLYKFDISIL TADGYSKTLE KPLVFNAGIS IAQTSSHDFV DPNFGEQSID VITYYDEISD FEYDTDSKEI RFSMPFEWSH TNINQTSVVH EELDIPKTYG DLLVSGFTMY INGVELSDDI STIDDFFSDG RVVHFIIYQQ ELLRVLENGS NENGMNFLIT PDRDYPHMSS VTENGQFRIF ASWEPENLQS GSDAKILFDV TDVFLKNKPI ATNYDFSITQ NNKVIYQQSG TSTDSREEHN VVEFTIPQDV TGIVNLNFNN LDNNDLARTT IPIVIDRVTS QKEITIPDWI RNNALWWSEE QIDDNTFVQG IEYLIKNKII VIPSTQQQDS SSQEIPSWIR NNAAWWAAKQ IDDQTFVQGL EYLIQKGIIR V // ID A9A348_NITMS Unreviewed; 432 AA. AC A9A348; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ABX12176.1}; DE EC=1.6.99.5 {ECO:0000313|EMBL:ABX12176.1}; GN OrderedLocusNames=Nmar_0280 {ECO:0000313|EMBL:ABX12176.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12176.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12176.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12176.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12176.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0280; -. DR EnsemblBacteria; ABX12176; ABX12176; Nmar_0280. DR KEGG; nmr:Nmar_0280; -. DR eggNOG; arCOG01546; Archaea. DR eggNOG; COG1005; LUCA. DR HOGENOM; HOG000228276; -. DR KO; K00337; -. DR OMA; LDLGWKF; -. DR BioCyc; NMAR436308:GI3J-290-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0050136; F:NADH dehydrogenase (quinone) activity; IEA:UniProtKB-EC. DR HAMAP; MF_01350; NDH1_NuoH; 1. DR InterPro; IPR001694; NADH_UbQ_OxRdtase_su1/FPO. DR InterPro; IPR018086; NADH_UbQ_OxRdtase_su1_CS. DR PANTHER; PTHR11432; PTHR11432; 2. DR Pfam; PF00146; NADHdh; 1. DR PROSITE; PS00667; COMPLEX1_ND1_1; 1. DR PROSITE; PS00668; COMPLEX1_ND1_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12176.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 102 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 150 172 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 184 205 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 217 242 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 254 273 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 310 328 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 365 385 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 406 425 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 432 AA; 47007 MW; B65C97DDA7BB1E74 CRC64; MSALAPKFKL SEFIKSLLDN AFWVVLLVSL IGLPAIQVAF FYIEMPVING ELLTPFLAMT WLADPTRSLP ILKAFMATDI FRVMAFPGFG FAALIAAATI FVERKMLAKL QLRVGPFYCG KIEGILQLMG DGLKLISKEI IIPAKADKPI FWAAPVIFVA TAAAFVALIP VAPGWVVADV DLGLLGVFAV IGFFPIITIL SAWSANSKFP FIGGIRALFQ MVSFEIPLIL SLLGVVILTG TLNLSEIAAS QSNFPWIIFL PVGAIVFFIT MLAELERIPF DLPEAESEIV AGWLTEFSGM MYGLVQLGTY LKLYAFAGLF VVLFLGGWNG PMVVPPFPEE FLTGVEMGPL TVGPFPGLPL FDQEMLNGTL WFVLKTVGVI FFILLPRGVF PRIRIDMLLS LGWTKLIGLA FVNIFIALGL LYAGVLGPGG LQ // ID A9A3Z0_NITMS Unreviewed; 1125 AA. AC A9A3Z0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE RecName: Full=DNA polymerase II large subunit {ECO:0000256|HAMAP-Rule:MF_00324}; DE Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00324}; DE EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00324}; GN Name=polC {ECO:0000256|HAMAP-Rule:MF_00324}; GN OrderedLocusNames=Nmar_1794 {ECO:0000313|EMBL:ABX13690.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13690.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13690.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13690.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Possesses two activities: a DNA synthesis (polymerase) CC and an exonucleolytic activity that degrades single-stranded DNA CC in the 3'- to 5'-direction. Has a template-primer preference which CC is characteristic of a replicative DNA polymerase. CC {ECO:0000256|HAMAP-Rule:MF_00324}. CC -!- CATALYTIC ACTIVITY: Degradation of single-stranded DNA. It acts CC progressively in a 3'- to 5'-direction, releasing nucleoside 5'- CC phosphates. {ECO:0000256|HAMAP-Rule:MF_00324}. CC -!- CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = CC diphosphate + DNA(n+1). {ECO:0000256|HAMAP-Rule:MF_00324}. CC -!- SUBUNIT: Heterodimer of a large subunit and a small subunit. CC {ECO:0000256|HAMAP-Rule:MF_00324}. CC -!- SIMILARITY: Belongs to the archaeal DNA polymerase II family. CC {ECO:0000256|HAMAP-Rule:MF_00324}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13690.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1794; -. DR EnsemblBacteria; ABX13690; ABX13690; Nmar_1794. DR KEGG; nmr:Nmar_1794; -. DR eggNOG; arCOG04447; Archaea. DR eggNOG; COG1933; LUCA. DR HOGENOM; HOG000286435; -. DR KO; K02322; -. DR OMA; RNCDGDE; -. DR BioCyc; NMAR436308:GI3J-1842-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000738; P:DNA catabolic process, exonucleolytic; IEA:UniProtKB-HAMAP. DR GO; GO:0006261; P:DNA-dependent DNA replication; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00324; DNApol_II_L_arch; 1. DR InterPro; IPR004475; PolC_DP2. DR InterPro; IPR016033; PolC_DP2_N. DR Pfam; PF03833; PolC_DP2; 1. DR PIRSF; PIRSF016275; PolC_DP2; 1. DR TIGRFAMs; TIGR00354; polC; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA replication {ECO:0000256|HAMAP-Rule:MF_00324}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00324}; KW DNA-directed DNA polymerase {ECO:0000256|HAMAP-Rule:MF_00324}; KW Exonuclease {ECO:0000256|HAMAP-Rule:MF_00324}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00324}; KW Multifunctional enzyme {ECO:0000256|HAMAP-Rule:MF_00324}; KW Nuclease {ECO:0000256|HAMAP-Rule:MF_00324}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00324}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00324}. FT DOMAIN 21 876 PolC_DP2. {ECO:0000259|Pfam:PF03833}. SQ SEQUENCE 1125 AA; 126137 MW; 88FD223491C1DFD0 CRC64; MSENDAISRI SGIKMPDYYS DYYSSLSTET YNIFETAASA KSSLVDSSGI IEPKIAFDLA DRVAKMHEID IAEPLRELLK TNGKELSALI LSKEIAQGKY SLPDSTLEEK LDLAVRVGLA IVTEGVTIAP LQGISEVKIK KNKDGSEYLS VSIAGPMRSA GGTESAVTML IADHVRKTAG LSKFQANSFD DETGRFVEEL RIYEREASSF QFHILDEDIE HVISNLPVEL DGVDTDPYEV VNHKSMARIK TDRVRGGALR VLNDGLIGRS KKLLKRIEMY NLDGWEWLND LKGAVQTGEK QEDAATKRMH EVITGRSVLS MPNRLGGFRL RYGRACNTGF AAVGLHPVVA EILDHTIAVG TQIKIDIPGK GSTVAFVDSI ETPVVRLKDG SVVKIRDVKH GIEIKNDIEK ILHLGDILIS FGDFLENNAQ LVPSGYVEEY WIEELKQKIA KYEPEDHYLT RFLNRIPTID EALKISIDFD MTLHPHYLYY WDKLSAEELG LLLNPKTINE TSVEYSPQTK KILEKLGVPH IVKNDSIILE NTEAKIFFNL LFREEPTIDD SSVPQIISKS SGIKIRNKFS TSIGVRIGRP EKSAPRQMKP PTHVLFPISD KGGPTRDLLK ASRNEHFFTS IYNRHCNQCN IPSIGIKCSK CGTKTTVTYR CPHCRDSLEE SFCEKCKRNA LAYSHKEFPL KSKLLEAQEK IRLRAQEPFK GVKELISQDK IAEPLEKGLV RQNFGLTVFK DGTVRFDATN SPLTQFKPSW IGTSVEKLKE LGYSHDVDGI PLEDPEQIVE LRMQDVIIPY ESGKYLVSIC KYIDTLLEKF YGKTSFYNVT NSEELIGHLI IGLAPHTSVG IVGRIIGYSE THVCFATPNW HSAKRRDADG DADSIMLLMD SLLNFSRQFL SDAIGGLMDA PLLVQPLVLP HESQPQAHNL EVTKSLPLEF FESTLQQAKA PDISSVEIIK SRLETERQFY DYHFTHTTSS LTTSKSRSAY STLGSMLDKF DMQVRNAELI DAVNTSEIVS DVISTHLVPD IMGNLRAYAR QNFRCTGCGK SYRRMPLIQT CVCGHKLIPT ITRGSVEKYL KLAKRLVDKY DVSEYQRGRI HALSDEIELV FGKSPGDQSL LTDYA // ID A9A272_NITMS Unreviewed; 184 AA. AC A9A272; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12783.1}; GN OrderedLocusNames=Nmar_0887 {ECO:0000313|EMBL:ABX12783.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12783.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12783.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12783.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12783.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12783; ABX12783; Nmar_0887. DR KEGG; nmr:Nmar_0887; -. DR eggNOG; ENOG4102U9N; Archaea. DR eggNOG; ENOG4110ZK6; LUCA. DR BioCyc; NMAR436308:GI3J-915-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 184 AA; 21581 MW; 233978542DB77B6B CRC64; MSVSKFLSNL KKSKIISPKI RLYLIDKDKH YFINEGSIKN GFNSKLTISK NRDSVLSAFS KMAFLFDEII RLRIVKYSNE SDSNELLYLL NLVPINRKIR TFLDWKVFGP EFTRDMSRLF EVRNDAVHCI SITEVFYNPK SKISLSTTSG FKRFTTDFQK AWKELLKIYV AEQEKLDLKK LSID // ID A9A2D6_NITMS Unreviewed; 887 AA. AC A9A2D6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 57. DE SubName: Full=Pyruvate, phosphate dikinase {ECO:0000313|EMBL:ABX12847.1}; DE EC=2.7.9.1 {ECO:0000313|EMBL:ABX12847.1}; GN OrderedLocusNames=Nmar_0951 {ECO:0000313|EMBL:ABX12847.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12847.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12847.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12847.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|PIRSR:PIRSR000853-3}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12847.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2D6; -. DR STRING; 436308.Nmar_0951; -. DR EnsemblBacteria; ABX12847; ABX12847; Nmar_0951. DR KEGG; nmr:Nmar_0951; -. DR eggNOG; arCOG01111; Archaea. DR eggNOG; COG0574; LUCA. DR HOGENOM; HOG000039664; -. DR KO; K01006; -. DR OMA; VRRETNP; -. DR BioCyc; NMAR436308:GI3J-979-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0050242; F:pyruvate, phosphate dikinase activity; IEA:UniProtKB-EC. DR GO; GO:0006090; P:pyruvate metabolic process; IEA:InterPro. DR Gene3D; 3.20.20.60; -; 1. DR Gene3D; 3.30.1490.20; -; 2. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.50.30.10; -; 1. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR008279; PEP-util_enz_mobile_dom. DR InterPro; IPR018274; PEP_util_AS. DR InterPro; IPR000121; PEP_util_C. DR InterPro; IPR023151; PEP_util_CS. DR InterPro; IPR002192; PPDK_PEP-bd. DR InterPro; IPR010121; Pyruvate_phosphate_dikinase. DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. DR PANTHER; PTHR22931:SF9; PTHR22931:SF9; 2. DR Pfam; PF00391; PEP-utilizers; 1. DR Pfam; PF02896; PEP-utilizers_C; 1. DR Pfam; PF01326; PPDK_N; 2. DR PIRSF; PIRSF000853; PPDK; 1. DR SUPFAM; SSF51621; SSF51621; 1. DR SUPFAM; SSF52009; SSF52009; 1. DR TIGRFAMs; TIGR01828; pyru_phos_dikin; 1. DR PROSITE; PS00742; PEP_ENZYMES_2; 1. DR PROSITE; PS00370; PEP_ENZYMES_PHOS_SITE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12847.1}; KW Magnesium {ECO:0000256|PIRSR:PIRSR000853-3}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR000853-3}; KW Pyruvate {ECO:0000313|EMBL:ABX12847.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12847.1}. FT DOMAIN 20 300 PPDK_N. {ECO:0000259|Pfam:PF01326}. FT DOMAIN 305 360 PPDK_N. {ECO:0000259|Pfam:PF01326}. FT DOMAIN 425 506 PEP-utilizers. FT {ECO:0000259|Pfam:PF00391}. FT DOMAIN 522 879 PEP-utilizers_C. FT {ECO:0000259|Pfam:PF02896}. FT METAL 754 754 Magnesium. FT {ECO:0000256|PIRSR:PIRSR000853-3}. FT METAL 778 778 Magnesium. FT {ECO:0000256|PIRSR:PIRSR000853-3}. SQ SEQUENCE 887 AA; 98281 MW; 4F8C9B119C7E0614 CRC64; MAKTKPVYAF EEADSKQRML LGGKGAGLSE MTRLKLPVPP GFTITTEVCN KYYENNRKLP KDVMPSVMKN IEKIEKKTGK KWNSTKNPLL VSVRSGAAIS MPGMMDTILN LGLNEKTVEG LATQTQNPRF AWDSYRRFIQ LFGKVVFGVN DEKFDHVLES AKTKQKVKDD SQLNVESLKK IVSEYKKICE KHTKRKFPDS PNEQLGLAIE AVFKSWMGER AIVYREKNNI TKDIANGTAV NVVTMVFGNM GDDSATGVVF TRNGHNGKKE IEGEYLINAQ GEDVVAGVRT GKNVALLKKE MPKSHKELSD ACSKLEKHFR EPQDIEFTIE QGKFYLLQTR TAKMSAGALV KTSVDMVKEK LIDKNKALTR IPAQQLEALL HRTMDESKLK NYKQLAKGIA ASPGAASGIA VFDVKKAIEL GEAGKKVILI RKETKPEDVP AFFSSEGVLT SLGGKSSHAA IVSRGMGKPC IVGCAELKID YDKNTCTANG KTVKEGEVIS INGSVGTVFI GEVPTVEPKV TKDFEQILDW AQKTKVLGIR ANADTPEAAK LARKFGGQGI GLCRTERMFN ANDRIGLFVD MIMAENAEKR AIVLKKLGQL QKSDFKQILK AMEGYEVTIR LLDPPLHEFL PNPEELSEKI QKLKAKKATK EIKKAEVVLK RARELAEVNP MMGHRGVRVG VTYPEIYEMQ IRAVFEALVD LTKQKVKAHP QIMIPQISSI AELNHIKKIY DKIKKEVETK NKMKLKINFG TMIEVVRAAL TANELATTAE FFSFGTNDLT QGTFSFSRED VEGKFLPEYM EKELLERSPF QSIDVNGVGS LIKIGIDHGR GIRKNMEVGI CGEHGGDPDS IKFCHGAKLS YVSASPHRIP IAIVAAAQAA IEQSKKK // ID A9A369_NITMS Unreviewed; 81 AA. AC A9A369; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12498.1}; GN OrderedLocusNames=Nmar_0602 {ECO:0000313|EMBL:ABX12498.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12498.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12498.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12498.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12498.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0602; -. DR EnsemblBacteria; ABX12498; ABX12498; Nmar_0602. DR KEGG; nmr:Nmar_0602; -. DR eggNOG; arCOG08744; Archaea. DR eggNOG; ENOG4110ZWG; LUCA. DR OMA; CAGDSKS; -. DR BioCyc; NMAR436308:GI3J-626-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 22 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 28 45 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 81 AA; 9244 MW; 79F1360176B2CEAB CRC64; MKFERRDIIL IAGLLLFMIG LIPFMSPAYA VIIVIIMYFG IKFYVAKRRQ LMEQDVGEGL CLDCGAKIHE KKCPNCDSSK E // ID A9A5C3_NITMS Unreviewed; 154 AA. AC A9A5C3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE RecName: Full=50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; GN Name=rpl13 {ECO:0000256|HAMAP-Rule:MF_01366}; GN OrderedLocusNames=Nmar_0426 {ECO:0000313|EMBL:ABX12322.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12322.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12322.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12322.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: This protein is one of the early assembly proteins of CC the 50S ribosomal subunit, although it is not seen to bind rRNA by CC itself. It is important during the early stages of 50S assembly. CC {ECO:0000256|HAMAP-Rule:MF_01366}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01366}. CC -!- SIMILARITY: Belongs to the ribosomal protein L13P family. CC {ECO:0000256|HAMAP-Rule:MF_01366}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12322.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C3; -. DR STRING; 436308.Nmar_0426; -. DR EnsemblBacteria; ABX12322; ABX12322; Nmar_0426. DR KEGG; nmr:Nmar_0426; -. DR eggNOG; arCOG04242; Archaea. DR eggNOG; COG0102; LUCA. DR HOGENOM; HOG000225287; -. DR KO; K02871; -. DR OMA; RLRVYIG; -. DR BioCyc; NMAR436308:GI3J-444-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.1180.10; -; 1. DR HAMAP; MF_01366; Ribosomal_L13; 1. DR InterPro; IPR005822; Ribosomal_L13. DR InterPro; IPR023564; Ribosomal_L13_dom. DR InterPro; IPR005755; Ribosomal_L13_euk/arc. DR PANTHER; PTHR11545; PTHR11545; 1. DR PANTHER; PTHR11545:SF3; PTHR11545:SF3; 1. DR Pfam; PF00572; Ribosomal_L13; 1. DR PIRSF; PIRSF002181; Ribosomal_L13; 1. DR SUPFAM; SSF52161; SSF52161; 1. DR TIGRFAMs; TIGR01077; L13_A_E; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01366, KW ECO:0000313|EMBL:ABX12322.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01366, KW ECO:0000313|EMBL:ABX12322.1}. SQ SEQUENCE 154 AA; 17698 MW; 7617AEC055EE32CE CRC64; MASQETVVRT DRPIVVDATN HIAGRLSSNV AKLLKQGHRV SIVNCEKIMY SGTRSNLIKE YREFLEINSI INPKHGPVHY RRPDTIITKM IRQMLPYDRK PSGKESIKRL RAYIGSPKEL KSLEKIQFEK AKIKKSPSNY TTMGELCRVI GWTE // ID A9A2C4_NITMS Unreviewed; 133 AA. AC A9A2C4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12835.1}; GN OrderedLocusNames=Nmar_0939 {ECO:0000313|EMBL:ABX12835.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12835.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12835.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12835.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12835.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0939; -. DR EnsemblBacteria; ABX12835; ABX12835; Nmar_0939. DR KEGG; nmr:Nmar_0939; -. DR eggNOG; arCOG05495; Archaea. DR eggNOG; COG4911; LUCA. DR HOGENOM; HOG000268079; -. DR OMA; FWHEKDS; -. DR BioCyc; NMAR436308:GI3J-967-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR018699; DUF2203. DR Pfam; PF09969; DUF2203; 1. DR PIRSF; PIRSF016498; UCP016498; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 133 AA; 15467 MW; 2476602995881D88 CRC64; MFSFFTTNEA NEALPDVIKK YEYALAKQNE VKKLEQQLQM SVSTTNSFEE YVTLKQQLNS AITKFYEAVE ILESTGVVVK SIEQGLLDFP SKRFDDEVWL CWKYGETEIK FWHEKDSGFM GRKPIEVSDE SLV // ID A9A2I7_NITMS Unreviewed; 93 AA. AC A9A2I7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13226.1}; GN OrderedLocusNames=Nmar_1330 {ECO:0000313|EMBL:ABX13226.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13226.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13226.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13226.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13226.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13226; ABX13226; Nmar_1330. DR KEGG; nmr:Nmar_1330; -. DR BioCyc; NMAR436308:GI3J-1364-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 47 88 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 93 AA; 10866 MW; 3035EBD076436AD6 CRC64; MFCHYFMATK KRATKRRSTR KTASKSKKTV RRSKPVSKAK RRATLVANKR KRDLQKANNK IKSLKKALRT AEKTARKKKA DYKKAQKRAS QTK // ID A9A3C6_NITMS Unreviewed; 94 AA. AC A9A3C6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12555.1}; GN OrderedLocusNames=Nmar_0659 {ECO:0000313|EMBL:ABX12555.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12555.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12555.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12555.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12555.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0659; -. DR EnsemblBacteria; ABX12555; ABX12555; Nmar_0659. DR KEGG; nmr:Nmar_0659; -. DR eggNOG; arCOG07440; Archaea. DR eggNOG; ENOG410Z38J; LUCA. DR HOGENOM; HOG000106071; -. DR OMA; CPNFQSR; -. DR BioCyc; NMAR436308:GI3J-684-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 94 AA; 10768 MW; 29D392E7185A1836 CRC64; MDELEHKFEV EIQEREGRQK LPDNVKAELK ASGMMDDKGK LKLKGVSPKM LKRMKQEFVA CPVLKDDIHF IQCFVCPNFQ SRVTGKVLCK GDSL // ID A9A5H9_NITMS Unreviewed; 185 AA. AC A9A5H9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; GN Name=rpl6 {ECO:0000256|HAMAP-Rule:MF_01365}; GN OrderedLocusNames=Nmar_0794 {ECO:0000313|EMBL:ABX12690.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12690.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12690.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12690.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: This protein binds to the 23S rRNA, and is important in CC its secondary structure. It is located near the subunit interface CC in the base of the L7/L12 stalk, and near the tRNA binding site of CC the peptidyltransferase center. {ECO:0000256|HAMAP-Rule:MF_01365}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01365}. CC -!- SIMILARITY: Belongs to the ribosomal protein L6P family. CC {ECO:0000256|HAMAP-Rule:MF_01365}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12690.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5H9; -. DR STRING; 436308.Nmar_0794; -. DR EnsemblBacteria; ABX12690; ABX12690; Nmar_0794. DR KEGG; nmr:Nmar_0794; -. DR eggNOG; arCOG04090; Archaea. DR eggNOG; COG0097; LUCA. DR HOGENOM; HOG000039905; -. DR KO; K02933; -. DR OMA; LRVRKWF; -. DR BioCyc; NMAR436308:GI3J-821-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.90.930.12; -; 2. DR HAMAP; MF_01365_A; Ribosomal_L6_A; 1. DR InterPro; IPR000702; Ribosomal_L6. DR InterPro; IPR020040; Ribosomal_L6_a/b-dom. DR InterPro; IPR002359; Ribosomal_L6_CS2. DR InterPro; IPR019907; Ribosomal_L6P_arc. DR PANTHER; PTHR11655; PTHR11655; 1. DR Pfam; PF00347; Ribosomal_L6; 2. DR PIRSF; PIRSF002162; Ribosomal_L6; 1. DR SUPFAM; SSF56053; SSF56053; 2. DR TIGRFAMs; TIGR03653; uL6_arch; 1. DR PROSITE; PS00700; RIBOSOMAL_L6_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01365, KW ECO:0000313|EMBL:ABX12690.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01365, KW ECO:0000313|EMBL:ABX12690.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01365}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01365}. FT DOMAIN 15 83 Ribosomal_L6. {ECO:0000259|Pfam:PF00347}. FT DOMAIN 99 173 Ribosomal_L6. {ECO:0000259|Pfam:PF00347}. SQ SEQUENCE 185 AA; 20974 MW; E4DEE3D43CB01C7E CRC64; MSTSQLEKMQ DQVEIPEGVT VTQNKNMLLF EGPLGKTHKN FRNIPVKIEI ADGKVNLKTI GERKRDYAIL HTARSIIRNI CEGLVEGYTI KMKVVFAHFP ITVKVEGKKI LIENFQGERA PRSTHIMGNT KVIPKGEDVL LTGEVWTDIT QTAANIELTT KVKNKDHRVF LDGIYVYEKK KGIEK // ID A9A181_NITMS Unreviewed; 741 AA. AC A9A181; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Copper amine oxidase-like protein {ECO:0000313|EMBL:ABX12367.1}; GN OrderedLocusNames=Nmar_0471 {ECO:0000313|EMBL:ABX12367.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12367.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12367.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12367.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12367.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12367; ABX12367; Nmar_0471. DR KEGG; nmr:Nmar_0471; -. DR eggNOG; arCOG02284; Archaea. DR eggNOG; COG4880; LUCA. DR OMA; YDENHII; -. DR BioCyc; NMAR436308:GI3J-491-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR019198; Beta_propeller_containing. DR Pfam; PF09826; Beta_propel; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 394 425 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 741 AA; 84683 MW; 5B415CB2FE43778C CRC64; MIKLSSKIII PIAVAISVIV TAGIMYAIGF EQEPQIVEVP TPEIVYVDKS ASEFFEGTND IKQISSQEEL VSILEASSLF GGGFYDTRSI RTMVVAESAM FDSVESVAVS APQAEFKSDD GGSDYSTTNV QVENVDEPDY LKNDSKYVYI VSRNTLSIID AYPAEDARLI LKIALDIESQ YIQNMFLNKD RLVIFYNGQS DEEIIPQFDF IPRPSYNPVT HALIVDVSDK ENPTILKDYS IDGHFRDARM IGDYAYFVTN NHINHQNPRL PIIMEDSVRI MTPDAFYFDN VEEFSNFNTL TAIDIFGDTI NSETFLMGYS GTFYVSENNF YLTYQQNMPF GYYENSSRDR FYDVIVPLLP NDIQDEIKSI QNDSSLNSSE QWVKISELMQ NSYNEMSKTD KEELFEKIRE ALNEYDAKIQ EENRKTIIHK ISIDEDKIEY VAKGTVPGRL LNQFSMDESG DRFRVATTIE YYIQHEGTIR SNAVYVLDEQ LNIVGELEDI APDESIFSSR FMGDRLYLVT FEQIDPFFVI DLSKDTPKIL GELKIPGFSN YLHPFDEDHV IGIGRDTKVD ENDRVQQLGV KVALFNVADV SNPKVLDDFV IGDRSSHSEA QYNHKAFFFD KSRNVLSIPI SGDSDRLEHI TSKMFAPEYN RWSGFYVFDV DSTNGFSIKG TITHSDSDSR YYGMGDARTF YIDDVLYTAS QGYLKMNSFE NLEEINTIKL ENTGKFIDYL EEPMMEVEPV R // ID A9A1W4_NITMS Unreviewed; 598 AA. AC A9A1W4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX12085.1}; GN OrderedLocusNames=Nmar_0189 {ECO:0000313|EMBL:ABX12085.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12085.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12085.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12085.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12085.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1W4; -. DR STRING; 436308.Nmar_0189; -. DR EnsemblBacteria; ABX12085; ABX12085; Nmar_0189. DR KEGG; nmr:Nmar_0189; -. DR eggNOG; ENOG4102TTI; Archaea. DR eggNOG; ENOG410XQA6; LUCA. DR OMA; CHEMTEE; -. DR BioCyc; NMAR436308:GI3J-192-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12085.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12085.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 18 35 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 47 68 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 101 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 116 133 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 164 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 176 199 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 206 228 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 243 261 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 282 309 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 315 338 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 386 590 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. FT COILED 346 377 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 598 AA; 67742 MW; 4302FC96BCCFF250 CRC64; MNENSTLTEN VFFKQSHILL MLILTLVFFT GLYQLRPFLD DSQFSWITIP TYTILPALLS GYAFVLAIRL YKQQNFQAKA FLVFAIGSLS WFIAELIWLM YEQVWMRDPF PSEADIFYIA AYPLITLFLF ILLKPIFKSI SKNAWLFSIA LSFSLFIPSI LVAYDDIQGD EVFAVSIALA YPAMSSVQLV PALLGLFYLG KKAANFSWIL FLFGIIVYSI SDTFFLFAEL DGSYYDGHPV DLLYVYSYVL LIFALLVRWK FANQPTEKNQ EMFFSEHVKF ETITKFGIPL TLAIIAMVIF IIMIQAIFIQ SNEQISLFNI VIGIVGMLSV FTAMIVILNK NLTKLVHIRT EELEEQKSNL ENLVEEKTQE ILKQERLSAI GELSGRLAHD LRNPLSIMKL SVELLKKQPS DRTFSDADVQ KRLDLIDKSI TRISHQVDDV LGYVRNSPLR LANSSVHELL KTSIEKINVP SNVKIIISEK DVNINCDPVK IDAVFINFLI NSIQALSDNG GKITIDISET DDKVKLEFSD SGPGIPEDII DNVFEPLFTT KQKGTGLGLA SCKNIVELHQ GTISVKNNPT TFTIEMPKLL SQDNKIET // ID A9A277_NITMS Unreviewed; 178 AA. AC A9A277; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12788.1}; GN OrderedLocusNames=Nmar_0892 {ECO:0000313|EMBL:ABX12788.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12788.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12788.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12788.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12788.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12788; ABX12788; Nmar_0892. DR KEGG; nmr:Nmar_0892; -. DR eggNOG; arCOG10561; Archaea. DR eggNOG; ENOG41111AH; LUCA. DR BioCyc; NMAR436308:GI3J-920-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 178 AA; 21021 MW; 657AB99A7D5A1770 CRC64; MSENENLFWS KHYSLKWSDF KAEHNPASYA DSHSVIKYRF TWTVDSEKMG SEILFLIKNI QVSVEFCPLL SSVRPSETSD QLLKYEQGRF DLAELVKREH ISNLQTKFEG KNFPTRGKNE EQRKQLAKED SGKMIAQEIE QLQQILEKRL QEYDETTDYG NNPEKQLEYA LKFEELKL // ID A9A370_NITMS Unreviewed; 388 AA. AC A9A370; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12499.1}; GN OrderedLocusNames=Nmar_0603 {ECO:0000313|EMBL:ABX12499.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12499.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12499.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12499.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12499.1; -; Genomic_DNA. DR ProteinModelPortal; A9A370; -. DR STRING; 436308.Nmar_0603; -. DR EnsemblBacteria; ABX12499; ABX12499; Nmar_0603. DR KEGG; nmr:Nmar_0603; -. DR eggNOG; arCOG01241; Archaea. DR eggNOG; COG0582; LUCA. DR BioCyc; NMAR436308:GI3J-627-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 133 254 Phage_integrase. FT {ECO:0000259|Pfam:PF00589}. FT COILED 317 351 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 388 AA; 46080 MW; 4FFEC84BE1AC6798 CRC64; MSSFLLKKKR LKTWDEKLSN KSQRTKDGYT LVIKSFEKFC SEYYGGRTKD DIFDELSVLK DAEKTLATVD LIQNWINWHY SHGVKTSVVK LYLAWLGKYF DYREISITQK IKDELDFKRD LKDEPFALEI QHIQNIFKFA SPKKIGFYLA LVSTGARPAE LLQVKKRDII TSTKRLKVLI QPEGVKTRHG RSAYLTKEAA RYCLMRLRQI SDDDLVWGKH EDYSKTEKAE SKTFSRYCDN AGYVERYHSN NYRKITLYSF RSFFFSAAAD VNREGYAHKM TGHGGYLSQY DRMSDEKKLE WFLKVEPFLT IDDDERLQLE NKQLKKENTE KKQFEEEIKN LKKRQVELEY NQKEYESIKP DVEKLVLNYF EELGEDFFRK VFSKNSIN // ID A9A2K6_NITMS Unreviewed; 574 AA. AC A9A2K6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Putative sensor with HAMP domain {ECO:0000313|EMBL:ABX13245.1}; GN OrderedLocusNames=Nmar_1349 {ECO:0000313|EMBL:ABX13245.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13245.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13245.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13245.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13245.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2K6; -. DR STRING; 436308.Nmar_1349; -. DR EnsemblBacteria; ABX13245; ABX13245; Nmar_1349. DR KEGG; nmr:Nmar_1349; -. DR eggNOG; arCOG02363; Archaea. DR eggNOG; arCOG07810; Archaea. DR eggNOG; COG2199; LUCA. DR HOGENOM; HOG000107533; -. DR OMA; RWARITI; -. DR BioCyc; NMAR436308:GI3J-1383-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0016849; F:phosphorus-oxygen lyase activity; IEA:InterPro. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR GO; GO:0009190; P:cyclic nucleotide biosynthetic process; IEA:InterPro. DR GO; GO:0035556; P:intracellular signal transduction; IEA:InterPro. DR Gene3D; 3.30.70.1230; -; 1. DR InterPro; IPR001054; A/G_cyclase. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR029787; Nucleotide_cyclase. DR Pfam; PF00211; Guanylate_cyc; 1. DR Pfam; PF00672; HAMP; 1. DR SMART; SM00304; HAMP; 1. DR SUPFAM; SSF55073; SSF55073; 1. DR PROSITE; PS50885; HAMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 298 316 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 318 370 HAMP. {ECO:0000259|PROSITE:PS50885}. SQ SEQUENCE 574 AA; 64381 MW; DD910886C8C50107 CRC64; MGSFVSISTK LIFLVLAISI TSIAVTTGLA YNFADSIIKE NFKESLKDES ETRGNTIASI IESRIDKLGN FAQNESLVSS FDVLIPVLDD VSFNRALEEQ TPLLHHEFHS FQLNEFEAGI RDLQIINMRG KPIFSLNEQV DPLKYVKGNY KVSEPTVEFV QSLDKSRIMK ISLPVYSDSG KQEAVMIATM GTSIFDDILM NRFGLHDTGE VYLVNHNRMM ISESIFLENT PFNQKVDTFA VSECFENGNN VEASEYTDYR NVDIFGYSYC KPDLGFVLLT EVDEAGILKP ITELQTNIVI VGISLIIVAS IVTFVLSKRI SKPIIKLRDA SKQLSAGNFE VRTNIQTNDE IEELSTSFDN MAKTLQETIS AIGKRENIIK QQQDILLKFS EQKREGYVCL VDLVGSLKLT QNLSDDKKKR YTEIFTESVL PIIKKHEGIP IKIIDDAILF YFPISADNLE SLSNTLNCCL EITKLEHELN EKTASENLPG LAYRISSAFG SVNESKTSDS KLDDIFGEPV NAVFKINQYA LPNTVVVDHS IYEKASESGF EFTKIARSII KGLEFTIFVV SSKF // ID A9A3Z5_NITMS Unreviewed; 128 AA. AC A9A3Z5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13695.1}; GN OrderedLocusNames=Nmar_1799 {ECO:0000313|EMBL:ABX13695.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13695.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13695.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13695.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13695.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13695; ABX13695; Nmar_1799. DR KEGG; nmr:Nmar_1799; -. DR eggNOG; arCOG04038; Archaea. DR eggNOG; ENOG4111UI0; LUCA. DR HOGENOM; HOG000110251; -. DR OMA; EDEYNAP; -. DR BioCyc; NMAR436308:GI3J-1847-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 128 AA; 15148 MW; F7DE803D0426EECF CRC64; MAKKRIRIDM EDSDGARYDI KLEGNVTRDK VLKIFEMMDL MNIEEEETTT NIDSVGSKIW HIIDKFFPMG KFTSTNILEK YEDEFNEPIK LSVISTYLSR FSSKGRVDRT RNGREWTYQT IKISQKQH // ID A9A1C5_NITMS Unreviewed; 170 AA. AC A9A1C5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12760.1}; GN OrderedLocusNames=Nmar_0864 {ECO:0000313|EMBL:ABX12760.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12760.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12760.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12760.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12760.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0864; -. DR EnsemblBacteria; ABX12760; ABX12760; Nmar_0864. DR KEGG; nmr:Nmar_0864; -. DR eggNOG; arCOG06534; Archaea. DR eggNOG; ENOG410YVDI; LUCA. DR BioCyc; NMAR436308:GI3J-892-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 112 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 170 AA; 19554 MW; 59EBFF972CC0EF4F CRC64; MILIPLQNDV FAELADFVDP NKDPQYYLDR YYNEVTYKSW FDRNYPDITI EEAVGLNEES SVIDSILKKE LIQEADATLV HQEPIQTNNS ETIHMILAIG GLGILFGAVY GIKRKVNDNT RQISINKETI KNKIIKPITR TNPLDVLQMR LVKGEISLEE FEILEKKLQS // ID A9A361_NITMS Unreviewed; 379 AA. AC A9A361; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 53. DE SubName: Full=2-alkenal reductase {ECO:0000313|EMBL:ABX12490.1}; DE EC=1.3.1.74 {ECO:0000313|EMBL:ABX12490.1}; GN OrderedLocusNames=Nmar_0594 {ECO:0000313|EMBL:ABX12490.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12490.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12490.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12490.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12490.1; -; Genomic_DNA. DR ProteinModelPortal; A9A361; -. DR STRING; 436308.Nmar_0594; -. DR EnsemblBacteria; ABX12490; ABX12490; Nmar_0594. DR KEGG; nmr:Nmar_0594; -. DR eggNOG; arCOG02833; Archaea. DR eggNOG; COG0265; LUCA. DR HOGENOM; HOG000223641; -. DR OMA; PQGAYIS; -. DR BioCyc; NMAR436308:GI3J-617-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0032440; F:2-alkenal reductase [NAD(P)] activity; IEA:UniProtKB-EC. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro. DR Gene3D; 2.30.42.10; -; 1. DR InterPro; IPR001478; PDZ. DR InterPro; IPR009003; Peptidase_S1_PA. DR InterPro; IPR001940; Peptidase_S1C. DR Pfam; PF13180; PDZ_2; 1. DR PRINTS; PR00834; PROTEASES2C. DR SMART; SM00228; PDZ; 1. DR SUPFAM; SSF50156; SSF50156; 1. DR SUPFAM; SSF50494; SSF50494; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12490.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 265 363 PDZ (DHR). {ECO:0000259|SMART:SM00228}. SQ SEQUENCE 379 AA; 39676 MW; 8FA125344E506C9D CRC64; MDKSGVFVGG AIGAVIVVAI FAVLFVSPPE SVKPDIVVSN GHGPSTVGEV TPVYSKDLSL IEIFEKSEPG VVRVNVQREE VSDVGGVGSG FVFDKQGHII TNEHVIDDAK KIIITFLDGR SYNAEIIGTD EFTDLAVVKV NADLALLHPL SIGDSSNLKV GEPIAAIGNP FGLSGSMTSG IVSQLGRLLP SGSGYSIPDV IQTDAAINPG NSGGPLLNMR GEIVGINTAI QSATGEFTGV GFAIPSQTVA KIVPTLIEDG DYKHPWIGIS GRDIDPDLAK VLELPDAVGF LVVTVIEDSP ASKAGLIGSE KTIDVDGVNY PMGGDIILAV DGIEVRKIDD ILIHLQRAKS VGDEMVLEVL RDGRTTDISI ILQERPNGN // ID A9A2E6_NITMS Unreviewed; 306 AA. AC A9A2E6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Elongation factor Tu domain 2 protein {ECO:0000313|EMBL:ABX12857.1}; GN OrderedLocusNames=Nmar_0961 {ECO:0000313|EMBL:ABX12857.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12857.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12857.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12857.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12857.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E6; -. DR STRING; 436308.Nmar_0961; -. DR EnsemblBacteria; ABX12857; ABX12857; Nmar_0961. DR KEGG; nmr:Nmar_0961; -. DR eggNOG; arCOG01564; Archaea. DR eggNOG; COG3276; LUCA. DR HOGENOM; HOG000229777; -. DR OMA; ISNTSMK; -. DR BioCyc; NMAR436308:GI3J-989-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW. DR InterPro; IPR009000; Transl_B-barrel. DR InterPro; IPR004161; Transl_elong_EFTu/EF1A_2. DR Pfam; PF03144; GTP_EFTU_D2; 1. DR SUPFAM; SSF50447; SSF50447; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Elongation factor {ECO:0000313|EMBL:ABX12857.1}; KW Protein biosynthesis {ECO:0000313|EMBL:ABX12857.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 154 220 GTP_EFTU_D2. {ECO:0000259|Pfam:PF03144}. SQ SEQUENCE 306 AA; 33665 MW; 7DB52CAC9DC908C8 CRC64; MVKSVNFVVL GKQDIASEFG KKGTETDLTL YDRKESDIIK TWVAPSGFPD KIQPLFQAIN LAEYVILYVD KLDKFTGEQI IALDSLKKEN GILSHTFDVD ESKLDAMIKG TVVEKYTKVD QDKIKEEMDK LEPISSDGSS EMVIDHCFDV KGVGTVILGK VTNGKVKQYD NLKLYPAGID VLIKSIQMHD DPVEESICPA RVGLAVKGAK PDEVGRGDVI SEEGVVDIKT EIEIDFQKSP FYKSEIAENQ GCLVNIGLQI KAAKFTSISP LKLAFEKPIV CKSGQIAIIL KPESPTIRIL GSGQIK // ID A9A4K8_NITMS Unreviewed; 185 AA. AC A9A4K8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12986.1}; GN OrderedLocusNames=Nmar_1090 {ECO:0000313|EMBL:ABX12986.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12986.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12986.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12986.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12986.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1090; -. DR EnsemblBacteria; ABX12986; ABX12986; Nmar_1090. DR KEGG; nmr:Nmar_1090; -. DR eggNOG; arCOG00452; Archaea. DR eggNOG; COG5491; LUCA. DR BioCyc; NMAR436308:GI3J-1121-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 185 AA; 20718 MW; 0274CF9EB116CAC2 CRC64; MSVKCVEIDN ENISHSVTLT PRLEYSASLL DEIVTVISQK RDDLKQSNKD LISDFDESDK THLQAIELER TMAFSLEILT LAKRKTKSIT NIHSIPQVLP SSIPLIRTIS AQLYELVPDC SQKLSELSVH LGSIVLDSAT LTHASFDFSQ SNTESSTLLD EVKLMVDSKI SKQYPNVDFF KLCNT // ID A9A300_NITMS Unreviewed; 138 AA. AC A9A300; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12128.1}; GN OrderedLocusNames=Nmar_0232 {ECO:0000313|EMBL:ABX12128.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12128.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12128.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12128.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12128.1; -; Genomic_DNA. DR ProteinModelPortal; A9A300; -. DR STRING; 436308.Nmar_0232; -. DR EnsemblBacteria; ABX12128; ABX12128; Nmar_0232. DR KEGG; nmr:Nmar_0232; -. DR eggNOG; arCOG04055; Archaea. DR eggNOG; COG1371; LUCA. DR HOGENOM; HOG000229617; -. DR BioCyc; NMAR436308:GI3J-238-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.55.10.10; -; 1. DR InterPro; IPR002804; Archease. DR InterPro; IPR023572; Archease_dom. DR PANTHER; PTHR12682; PTHR12682; 1. DR Pfam; PF01951; Archease; 1. DR ProDom; PD012969; PD012969; 1. DR SUPFAM; SSF69819; SSF69819; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 137 Archease. {ECO:0000259|Pfam:PF01951}. SQ SEQUENCE 138 AA; 16081 MW; 274FAE069BDD5ADB CRC64; MSYKFVDHAT DAIIEVTAKD LQEAFSVTAD AVINLTLDQD KVEEKEQRKF VAEGKDLRYL LFSWLEEIPF LLITEGFAIK RIEFDITQNQ DYKINATAYG EPLDFKKHNF KVEIKAPTFY DMEIKQNGGV FMRFLLDL // ID A9A3T4_NITMS Unreviewed; 108 AA. AC A9A3T4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; GN Name=rps11 {ECO:0000256|HAMAP-Rule:MF_01310}; GN OrderedLocusNames=Nmar_1450 {ECO:0000313|EMBL:ABX13346.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13346.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13346.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13346.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Located on the platform of the 30S subunit. CC {ECO:0000256|HAMAP-Rule:MF_01310}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01310}. CC -!- SIMILARITY: Belongs to the ribosomal protein S11P family. CC {ECO:0000256|HAMAP-Rule:MF_01310, ECO:0000256|RuleBase:RU003629}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13346.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3T4; -. DR STRING; 436308.Nmar_1450; -. DR EnsemblBacteria; ABX13346; ABX13346; Nmar_1450. DR KEGG; nmr:Nmar_1450; -. DR eggNOG; arCOG04240; Archaea. DR eggNOG; COG0100; LUCA. DR HOGENOM; HOG000111598; -. DR KO; K02948; -. DR OMA; FTGFHIR; -. DR BioCyc; NMAR436308:GI3J-1487-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.420.80; -; 1. DR HAMAP; MF_01310; Ribosomal_S11; 1. DR InterPro; IPR001971; Ribosomal_S11. DR InterPro; IPR018102; Ribosomal_S11_CS. DR PANTHER; PTHR11759; PTHR11759; 1. DR Pfam; PF00411; Ribosomal_S11; 1. DR PIRSF; PIRSF002131; Ribosomal_S11; 1. DR PROSITE; PS00054; RIBOSOMAL_S11; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01310, KW ECO:0000256|RuleBase:RU003629, ECO:0000313|EMBL:ABX13346.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01310, KW ECO:0000256|RuleBase:RU003629, ECO:0000313|EMBL:ABX13346.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01310}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01310}. SQ SEQUENCE 108 AA; 11243 MW; 218A83F25DB4899B CRC64; MTDLTGGETV SISSGGIHVN ADRYESSPFA AMKAANQVVE SAKTKGFTGF HIRVRAVGGV GSRVPGPGAQ AAIRALARGG FKIGRIDDVT PIPHDTTRKK GGKRGRRV // ID A9A5X8_NITMS Unreviewed; 418 AA. AC A9A5X8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE RecName: Full=3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}; DE Short=HMG-CoA reductase {ECO:0000256|RuleBase:RU361219}; GN OrderedLocusNames=Nmar_1560 {ECO:0000313|EMBL:ABX13456.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13456.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13456.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13456.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the HMG-CoA reductase family. CC {ECO:0000256|RuleBase:RU361219}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13456.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X8; -. DR STRING; 436308.Nmar_1560; -. DR EnsemblBacteria; ABX13456; ABX13456; Nmar_1560. DR KEGG; nmr:Nmar_1560; -. DR eggNOG; arCOG04260; Archaea. DR eggNOG; COG1257; LUCA. DR HOGENOM; HOG000266314; -. DR KO; K00054; -. DR OMA; ATGNDFR; -. DR BioCyc; NMAR436308:GI3J-1603-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0050662; F:coenzyme binding; IEA:InterPro. DR GO; GO:0004420; F:hydroxymethylglutaryl-CoA reductase (NADPH) activity; IEA:InterPro. DR GO; GO:0015936; P:coenzyme A metabolic process; IEA:InterPro. DR Gene3D; 3.30.70.420; -; 1. DR Gene3D; 3.90.770.10; -; 2. DR InterPro; IPR002202; HMG_CoA_Rdtase. DR InterPro; IPR004553; HMG_CoA_Rdtase_bac-typ. DR InterPro; IPR023074; HMG_CoA_Rdtase_cat. DR InterPro; IPR023076; HMG_CoA_Rdtase_CS. DR InterPro; IPR009023; HMG_CoA_Rdtase_NAD(P)-bd_dom. DR InterPro; IPR009029; HMG_CoA_Rdtase_sub-bd_dom. DR PANTHER; PTHR10572; PTHR10572; 1. DR Pfam; PF00368; HMG-CoA_red; 1. DR PRINTS; PR00071; HMGCOARDTASE. DR SUPFAM; SSF55035; SSF55035; 1. DR SUPFAM; SSF56542; SSF56542; 2. DR TIGRFAMs; TIGR00532; HMG_CoA_R_NAD; 1. DR PROSITE; PS01192; HMG_COA_REDUCTASE_3; 1. DR PROSITE; PS50065; HMG_COA_REDUCTASE_4; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000256|RuleBase:RU361219, KW ECO:0000313|EMBL:ABX13456.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 418 AA; 44959 MW; 89C2C92D910E0F04 CRC64; MPDSSISKFF EKTRTERLDV IKNFANLSED DVKSLELPDG GITFDKADKM VENAFGTFSL PLGVATNFKI NNKDYLVPMV IEEPSVIAAA SKAAKLARPK GGFAVVADES YSIGQIQVLG TDIDNAISKI KENIKEILEL ANSKSNTLSK MGKGAKEITC KKLDTDFEPM LIVELLIDVG DAMGANVTNT MCEGVAPLIE KLTSGKTLLR ILSNYSTRRM VKATAVFDKE SVGGEKVVDN MIHAYQFAKH DVYRAVTHNK GIMNGIIAVA NATGQDSRAI EAAANAYASR SGQYRSLSEW TKDSDGNLVG TLEIPLSVGI VGGIINVHPV AKICTKILGA ESAKEMACII TATGLAQNFS AMRALATDGI QKGHMRLHAR NLASAAGAST EQIDKIVSQM IEENNISVNR AKELLEQN // ID A9A4T6_NITMS Unreviewed; 158 AA. AC A9A4T6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Cytidyltransferase-related domain {ECO:0000313|EMBL:ABX13390.1}; GN OrderedLocusNames=Nmar_1494 {ECO:0000313|EMBL:ABX13390.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13390.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13390.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13390.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13390.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4T6; -. DR STRING; 436308.Nmar_1494; -. DR EnsemblBacteria; ABX13390; ABX13390; Nmar_1494. DR KEGG; nmr:Nmar_1494; -. DR eggNOG; arCOG01223; Archaea. DR eggNOG; COG1019; LUCA. DR HOGENOM; HOG000284155; -. DR KO; K02201; -. DR OMA; EIMVIND; -. DR BioCyc; NMAR436308:GI3J-1532-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF01467; CTP_transf_like; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13390.1}. FT DOMAIN 9 144 CTP_transf_like. FT {ECO:0000259|Pfam:PF01467}. SQ SEQUENCE 158 AA; 17371 MW; 0D1603EEF1196CC6 CRC64; MSQFSLVAMG GTFDIIHRGH ITLLSSAFEI SDKVIIGLTS DEFAKKRGKT LSNNYEKRLA NLTETIFKEF PKSSFQISKL DNDFGPAVLE PEVQALVVSD ETSSQGDVLN DLRAKKNLSP VEVITVPMHL AKDGSRISTT RIKNSEIDSE GNLLSVDK // ID A9A5B1_NITMS Unreviewed; 320 AA. AC A9A5B1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 48. DE SubName: Full=Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit {ECO:0000313|EMBL:ABX12310.1}; GN OrderedLocusNames=Nmar_0414 {ECO:0000313|EMBL:ABX12310.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12310.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12310.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12310.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12310.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5B1; -. DR STRING; 436308.Nmar_0414; -. DR EnsemblBacteria; ABX12310; ABX12310; Nmar_0414. DR KEGG; nmr:Nmar_0414; -. DR eggNOG; arCOG01599; Archaea. DR eggNOG; COG1013; LUCA. DR HOGENOM; HOG000007086; -. DR KO; K00175; -. DR OMA; CSGKTSH; -. DR BioCyc; NMAR436308:GI3J-432-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro. DR Gene3D; 3.40.50.970; -; 1. DR InterPro; IPR032686; PFO_beta_C. DR InterPro; IPR011896; PorB_KorB. DR InterPro; IPR029061; THDP-binding. DR InterPro; IPR011766; TPP_enzyme-bd_C. DR Pfam; PF12367; PFO_beta_C; 1. DR Pfam; PF02775; TPP_enzyme_C; 1. DR SUPFAM; SSF52518; SSF52518; 1. DR TIGRFAMs; TIGR02177; PorB_KorB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyruvate {ECO:0000313|EMBL:ABX12310.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 49 196 TPP_enzyme_C. {ECO:0000259|Pfam:PF02775}. FT DOMAIN 200 285 PFO_beta_C. {ECO:0000259|Pfam:PF12367}. SQ SEQUENCE 320 AA; 35224 MW; EA8DF0E4C1484657 CRC64; MALKMADFKT DVHNDWCPGC GDFGIVNAIQ MALAEMGVER DKTAIFSGIG CSGKTSHYIN TYGVHTLHGR VLTFAQGAKI ANPEMTIVAV GGDGDGLGIG AGHFVAAGRR NVNMTYIIFD NGVYGLTKGQ ASPTLKLGEQ TKSLPSPNTN YNVNPIGLAV ASGFTFVARG YSYDVRHLKD LIIQAVNHKG LSFLDVLQPC PTYNDLNTRD WYAGTDLMDE AQKRHSRIYK LEEHGYDPEV HYNEEAEVNE RLSQALIKSL EWGNKIPIGV FYKNEIITPY TTRLKDKIPN YLENPPAKQN ISKNGISNTN ISHILDSLEV // ID A9A3T3_NITMS Unreviewed; 106 AA. AC A9A3T3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13345.1}; GN OrderedLocusNames=Nmar_1449 {ECO:0000313|EMBL:ABX13345.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13345.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13345.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13345.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13345.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13345; ABX13345; Nmar_1449. DR KEGG; nmr:Nmar_1449; -. DR eggNOG; ENOG4102UA3; Archaea. DR eggNOG; ENOG4110ZJS; LUCA. DR BioCyc; NMAR436308:GI3J-1486-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 106 AA; 11869 MW; E3B5D1035D6AC87A CRC64; MGNIWFLAIG VAVAAALFGS MAMQSMAPIN EVILSPQEKK CQQIANEGYK MHALYPEAQP DDLPEDDKKR LLYLDDLWMT ECVAVLPAES VFEIVNNVER DVSHDE // ID A9A3H0_NITMS Unreviewed; 547 AA. AC A9A3H0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE RecName: Full=Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; GN Name=corA {ECO:0000256|RuleBase:RU362010}; GN OrderedLocusNames=Nmar_1006 {ECO:0000313|EMBL:ABX12902.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12902.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12902.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12902.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Mediates influx of magnesium ions. CC {ECO:0000256|RuleBase:RU362010}. CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU362010}; CC Multi-pass membrane protein {ECO:0000256|RuleBase:RU362010}. CC -!- SIMILARITY: Belongs to the CorA metal ion transporter (MIT) CC (TC 1.A.35) family. {ECO:0000256|RuleBase:RU362010}. CC -!- CAUTION: Lacks conserved residue(s) required for the propagation CC of feature annotation. {ECO:0000256|RuleBase:RU362010}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12902.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3H0; -. DR STRING; 436308.Nmar_1006; -. DR EnsemblBacteria; ABX12902; ABX12902; Nmar_1006. DR KEGG; nmr:Nmar_1006; -. DR eggNOG; arCOG02265; Archaea. DR eggNOG; COG0598; LUCA. DR KO; K03284; -. DR BioCyc; NMAR436308:GI3J-1034-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW. DR GO; GO:0015087; F:cobalt ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015095; F:magnesium ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015693; P:magnesium ion transport; IEA:InterPro. DR InterPro; IPR004488; Mg/Co-transport_prot_CorA. DR InterPro; IPR002523; MgTranspt_CorA/ZnTranspt_ZntB. DR Pfam; PF01544; CorA; 1. DR TIGRFAMs; TIGR00383; corA; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|RuleBase:RU362010}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ion transport {ECO:0000256|RuleBase:RU362010}; KW Magnesium {ECO:0000256|RuleBase:RU362010}; KW Membrane {ECO:0000256|RuleBase:RU362010}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU362010}; KW Transmembrane helix {ECO:0000256|RuleBase:RU362010}; KW Transport {ECO:0000256|RuleBase:RU362010}. FT TRANSMEM 12 37 Helical. {ECO:0000256|RuleBase:RU362010}. FT TRANSMEM 57 78 Helical. {ECO:0000256|RuleBase:RU362010}. FT TRANSMEM 99 126 Helical. {ECO:0000256|RuleBase:RU362010}. FT TRANSMEM 146 168 Helical. {ECO:0000256|RuleBase:RU362010}. FT TRANSMEM 490 509 Helical. {ECO:0000256|RuleBase:RU362010}. FT TRANSMEM 521 541 Helical. {ECO:0000256|RuleBase:RU362010}. SQ SEQUENCE 547 AA; 62030 MW; 1304BA7E3E511C58 CRC64; MTNVAGLVVN RLVYGFVFAF LYQIVVAVAT SLLSIPLTGN IQDLITGFEH IEKEQGYLLI FWWIISTIII TALSLIIVRY KKYISPYKNE PDIDIPPKIT AVTAIVIGAI ISFLFFLLDS ILGSIVKIDS ATDVQAIYAA ASNGDFIPLV VSIVFSIIAG FIIVGVASKT AKVKELTKKV DISEFSKFSK LMSKKDDDVT TLSDTVGLQP GALVHVGEQH VKKVLIQQIE YDVNNHTVKD FENIDDCLNT HDNSLVSWTN IVGLHNPDLI RKIGQYYNLH ILTQADIMNT QLRPKLDAQD ENLFLILKLP HITNEGKLFM EQISLILGKD FVISFQETED DVFNPIRERL EKSIGALRTK KSDYLAYALI DAVIDHFYVV MEHIGARTEV LEEELMSNPT AQTLEVIHTL KREMVVLRKS IWPLREVIDS LERTDSELIE DRTKRYLRDV YGHTVQVMDN IEGLRDMIGG MLDTYLSSVS NKMNEIMKTL TIIASIFIPI TFIAGIYGTN FQYIPELEWE GSYFVMIFVM VIIVMAMLAW FKKKQWL // ID A9A1U5_NITMS Unreviewed; 328 AA. AC A9A1U5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Oxidoreductase domain protein {ECO:0000313|EMBL:ABX12066.1}; GN OrderedLocusNames=Nmar_0170 {ECO:0000313|EMBL:ABX12066.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12066.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12066.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12066.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12066.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U5; -. DR STRING; 436308.Nmar_0170; -. DR EnsemblBacteria; ABX12066; ABX12066; Nmar_0170. DR KEGG; nmr:Nmar_0170; -. DR eggNOG; arCOG01622; Archaea. DR eggNOG; COG0673; LUCA. DR OMA; IESNDEC; -. DR BioCyc; NMAR436308:GI3J-171-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000683; Oxidoreductase_N. DR Pfam; PF01408; GFO_IDH_MocA; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 131 GFO_IDH_MocA. {ECO:0000259|Pfam:PF01408}. SQ SEQUENCE 328 AA; 38178 MW; F84B542F43B6E006 CRC64; MIMKNIMVVG CGGVGSRHLQ SLAKIDLPVN LYAVDPDENS LKNSKKLFDE IPQNHNIKQV NFLKEFPKDV LKFDLCIIAT SSNVRLKVLK NVITNFTIKN LILEKVLFQS IEELDEADKI IDQKKINCWV NCYRREEKCW INIKKFFENN SNSKLYYGNA DWSMCCNTIH IVDLAVWLFD SKVEQIENKD IENKIYTSKR DGFIEFNGIL NGFLKNGTKL KLESNNKIPF ENVEFEIVTD TRKLRVNEAK GEGFLSRKET NWIPEKFSFH IPYQSEKTHK IAKKILETEK CNLTTLKESV EIHKPILLSF LNHLNKISDK KYSYCPIT // ID A9A271_NITMS Unreviewed; 558 AA. AC A9A271; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE RecName: Full=Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012}; DE Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012}; DE EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012}; GN Name=ilvD {ECO:0000256|HAMAP-Rule:MF_00012}; GN OrderedLocusNames=Nmar_0886 {ECO:0000313|EMBL:ABX12782.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12782.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12782.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12782.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: 2,3-dihydroxy-3-methylbutanoate = 3-methyl-2- CC oxobutanoate + H(2)O. {ECO:0000256|HAMAP-Rule:MF_00012}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00012}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000256|HAMAP-Rule:MF_00012}; CC -!- PATHWAY: Amino-acid biosynthesis; L-isoleucine biosynthesis; L- CC isoleucine from 2-oxobutanoate: step 3/4. {ECO:0000256|HAMAP- CC Rule:MF_00012}. CC -!- PATHWAY: Amino-acid biosynthesis; L-valine biosynthesis; L-valine CC from pyruvate: step 3/4. {ECO:0000256|HAMAP-Rule:MF_00012}. CC -!- SIMILARITY: Belongs to the IlvD/Edd family. {ECO:0000256|HAMAP- CC Rule:MF_00012}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12782.1; -; Genomic_DNA. DR ProteinModelPortal; A9A271; -. DR STRING; 436308.Nmar_0886; -. DR EnsemblBacteria; ABX12782; ABX12782; Nmar_0886. DR KEGG; nmr:Nmar_0886; -. DR eggNOG; arCOG04045; Archaea. DR eggNOG; COG0129; LUCA. DR HOGENOM; HOG000173155; -. DR KO; K01687; -. DR OMA; PIHKTGG; -. DR BioCyc; NMAR436308:GI3J-914-MONOMER; -. DR UniPathway; UPA00047; UER00057. DR UniPathway; UPA00049; UER00061. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0004160; F:dihydroxy-acid dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009099; P:valine biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00012; IlvD; 1. DR InterPro; IPR015928; Aconitase/3IPM_dehydase_swvl. DR InterPro; IPR004404; DihydroxyA_deHydtase. DR InterPro; IPR000581; DiOHA_6PGluconate_deHydtase. DR InterPro; IPR020558; DiOHA_6PGluconate_deHydtase_CS. DR PANTHER; PTHR21000; PTHR21000; 1. DR Pfam; PF00920; ILVD_EDD; 1. DR SUPFAM; SSF52016; SSF52016; 1. DR TIGRFAMs; TIGR00110; ilvD; 1. DR PROSITE; PS00886; ILVD_EDD_1; 1. DR PROSITE; PS00887; ILVD_EDD_2; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00012}; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00012}; KW Branched-chain amino acid biosynthesis {ECO:0000256|HAMAP- KW Rule:MF_00012}; Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00012}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00012}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000313|EMBL:ABX12782.1}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00012}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT METAL 122 122 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00012}. FT METAL 194 194 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00012}. SQ SEQUENCE 558 AA; 59458 MW; E533D1EF078DFD10 CRC64; MEEISSRNVV EGTSRAPQRA MYKAMGLDDS DLSKQMIGVC HTGNEATPCN IHLPRLALKA KEGVSDTGAT PREFSTIAVS DGIAMGHEGM KSSLISREVI ADSIELMVRA HQYDALVGIA GCDKSLPGTM MAMARLNVPS VFVYGGTIMP GMLNGEELTV VDVYEAVGAY DAGQLSLEGL KNIENTACPN EGSCGGMFTA NTMASISEAI GLALPGSASP PAEDDRREKM VYDTGVACAK ALQMDIRPRE VLTFEAFENA ITMLNSVGGS TNGILHLLAL ANEVGIKLTY DDFERVRKKT PHIADMKPGG NYVMNSLDKI GGIPFVLKKL LDKGLLNENC ITITGKTIKE NLNAMVMPQT EQQIIRPMEN PLHNVGTAVI LKGSLAPDGA VIKTAGVEMT KFTGKARVFD REELAFEAVK RGDIDEGHVV VIRYEGPKGG PGMREMLATT AALVGQGLGK KVAMVTDGRF SGGTRGFMVG HVAPEAYVGG PIALVKDDDE ITIDTETNII DLHVSSEELE NRRKQWSPPK PNYTSGALAK FATLVGSAAE GAITKPNL // ID A9A5D9_NITMS Unreviewed; 103 AA. AC A9A5D9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12338.1}; GN OrderedLocusNames=Nmar_0442 {ECO:0000313|EMBL:ABX12338.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12338.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12338.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12338.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12338.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0442; -. DR EnsemblBacteria; ABX12338; ABX12338; Nmar_0442. DR KEGG; nmr:Nmar_0442; -. DR eggNOG; arCOG08760; Archaea. DR eggNOG; ENOG41110NQ; LUCA. DR HOGENOM; HOG000108803; -. DR OMA; DMDGIGH; -. DR BioCyc; NMAR436308:GI3J-460-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 103 AA; 11943 MW; E1E041878EAF3BDE CRC64; MLLDLPVLKK GSFYFIKDSD TDLVMEDKTK RGLTVKETSV DEKLNVKADK GMIHDMDGIG HWVPIRWYFP KDSYDLDAVS IHAETMEKKY TELRELTCPD DDD // ID A9A116_NITMS Unreviewed; 265 AA. AC A9A116; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=RNA binding S1 domain protein {ECO:0000313|EMBL:ABX11977.1}; GN OrderedLocusNames=Nmar_0077 {ECO:0000313|EMBL:ABX11977.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11977.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11977.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11977.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11977.1; -; Genomic_DNA. DR ProteinModelPortal; A9A116; -. DR STRING; 436308.Nmar_0077; -. DR EnsemblBacteria; ABX11977; ABX11977; Nmar_0077. DR KEGG; nmr:Nmar_0077; -. DR eggNOG; arCOG04107; Archaea. DR eggNOG; COG1093; LUCA. DR HOGENOM; HOG000224965; -. DR KO; K03237; -. DR OMA; KDVNEHQ; -. DR BioCyc; NMAR436308:GI3J-78-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003743; F:translation initiation factor activity; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR Gene3D; 3.30.70.1130; -; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR022967; S1_dom. DR InterPro; IPR003029; S1_domain. DR InterPro; IPR024055; TIF2_asu_C. DR InterPro; IPR024054; TIF2_asu_middle. DR InterPro; IPR011488; TIF_2_asu. DR Pfam; PF07541; EIF_2_alpha; 1. DR Pfam; PF00575; S1; 1. DR SMART; SM00316; S1; 1. DR SUPFAM; SSF110993; SSF110993; 1. DR SUPFAM; SSF116742; SSF116742; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR PROSITE; PS50126; S1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 83 S1 motif. {ECO:0000259|PROSITE:PS50126}. SQ SEQUENCE 265 AA; 30258 MW; 43406A69807AED16 CRC64; MSTEIQEMPE QGEIVLATVT KVMDHGAYVT LDEYDNLQGF LHISEIAPGW IRSVNRFVKD GEKKVLLVKK VNPQRGDIDL SLKQVSKDQK KQKLKEVKKF EKGKTLLQNV QEKAKLSDED IEKLEDSIYS KYDSVYDAFI EIGRNGIDSI KELKIPKKTT GVIEEICSKI KLPSVEIRGI MEITNSKSDG IEIIRKTLLD ELKKDSTIDI TYLGAPKYRL SITSEDFKSA EKSLKPIIAD IQSKIEKKRG TFKFTREESK KTREN // ID A9A3X7_NITMS Unreviewed; 180 AA. AC A9A3X7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE RecName: Full=RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; DE Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940}; DE EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940}; GN OrderedLocusNames=Nmar_1781 {ECO:0000313|EMBL:ABX13677.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13677.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13677.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13677.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- CC phosphomonoester. {ECO:0000256|HAMAP-Rule:MF_01940}. CC -!- SIMILARITY: Belongs to the 2H phosphoesterase superfamily. ThpR CC family. {ECO:0000256|HAMAP-Rule:MF_01940}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13677.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X7; -. DR STRING; 436308.Nmar_1781; -. DR EnsemblBacteria; ABX13677; ABX13677; Nmar_1781. DR KEGG; nmr:Nmar_1781; -. DR eggNOG; arCOG01736; Archaea. DR eggNOG; COG1514; LUCA. DR HOGENOM; HOG000226389; -. DR KO; K01975; -. DR OMA; EYIRVIW; -. DR BioCyc; NMAR436308:GI3J-1828-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004113; F:2',3'-cyclic-nucleotide 3'-phosphodiesterase activity; IEA:InterPro. DR GO; GO:0008664; F:2'-5'-RNA ligase activity; IEA:InterPro. DR Gene3D; 3.90.1140.10; -; 1. DR HAMAP; MF_01940; RNA_CPDase; 1. DR InterPro; IPR014051; Phosphoesterase_HXTX. DR InterPro; IPR004175; RNA_CPDase. DR InterPro; IPR009097; RNA_ligase/cNuc_Pdiesterase. DR Pfam; PF02834; LigT_PEase; 2. DR SUPFAM; SSF55144; SSF55144; 1. DR TIGRFAMs; TIGR02258; 2_5_ligase; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_01940}; KW Ligase {ECO:0000313|EMBL:ABX13677.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 87 LigT_PEase. {ECO:0000259|Pfam:PF02834}. FT DOMAIN 89 170 LigT_PEase. {ECO:0000259|Pfam:PF02834}. FT MOTIF 38 41 HXTX 1. {ECO:0000256|HAMAP- FT Rule:MF_01940}. FT MOTIF 123 126 HXTX 2. {ECO:0000256|HAMAP- FT Rule:MF_01940}. FT ACT_SITE 38 38 Proton donor. {ECO:0000256|HAMAP- FT Rule:MF_01940}. FT ACT_SITE 123 123 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_01940}. SQ SEQUENCE 180 AA; 20608 MW; 6422B6765450D0C4 CRC64; MRTFVAIEIS ENDIKKSIKD FQNKLQINAK PINSDQLHFT LQFLGEISEE QVQKVIESLQ TIKFSEFTIN LKGIGAFPKP KFPRVIWIGT DEEGGKNLIE LAKKVENVLK PLGLVSDKPF KPHITIFRIK KKIGDMTEEL NKQKFMDFGM QKISRIMLKK SELTSDGPIY SNLEEVIAVK // ID A9A2L2_NITMS Unreviewed; 228 AA. AC A9A2L2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13251.1}; GN OrderedLocusNames=Nmar_1355 {ECO:0000313|EMBL:ABX13251.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13251.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13251.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13251.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13251.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1355; -. DR EnsemblBacteria; ABX13251; ABX13251; Nmar_1355. DR KEGG; nmr:Nmar_1355; -. DR BioCyc; NMAR436308:GI3J-1389-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 228 AA; 26402 MW; CD1498483B89F31B CRC64; MNKTVPIGIG IVVVAIIVGI FYLAPNLFVV TTMDVPEDLL HVQIDGKIKP YETPLNAPQS DRKPEYVLIP NKIYSELHGA IQIALYNVGT LPENLQHVQV SGFYDPEAPD WYYPEQDRTK QVIFVNDIVE LEPVDLGNKY TTQELRDRYD QIHKEFELLK EEFSSGNMPQ ENYLSALQSL AEHEVELFLD VKEHTFERDE MTEYNFWHRG VMKFPTTLEQ EVTKLTVN // ID A9A434_NITMS Unreviewed; 353 AA. AC A9A434; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE RecName: Full=UPF0284 protein Nmar_0322 {ECO:0000256|HAMAP-Rule:MF_01086}; GN OrderedLocusNames=Nmar_0322 {ECO:0000313|EMBL:ABX12218.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12218.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12218.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12218.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the UPF0284 family. {ECO:0000256|HAMAP- CC Rule:MF_01086}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12218.1; -; Genomic_DNA. DR ProteinModelPortal; A9A434; -. DR STRING; 436308.Nmar_0322; -. DR EnsemblBacteria; ABX12218; ABX12218; Nmar_0322. DR KEGG; nmr:Nmar_0322; -. DR eggNOG; arCOG04272; Archaea. DR eggNOG; COG2038; LUCA. DR HOGENOM; HOG000224860; -. DR OMA; VGDKMMP; -. DR BioCyc; NMAR436308:GI3J-337-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008939; F:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR HAMAP; MF_01086; UPF0284; 1. DR InterPro; IPR003200; Nict_dMeBzImd_PRibTrfase-like. DR InterPro; IPR002805; Nict_dMeBzImd_PRibTrfase_put. DR Pfam; PF02277; DBI_PRT; 1. DR SUPFAM; SSF52733; SSF52733; 1. DR TIGRFAMs; TIGR00303; TIGR00303; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosyltransferase {ECO:0000313|EMBL:ABX12218.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12218.1}. FT DOMAIN 124 259 DBI_PRT. {ECO:0000259|Pfam:PF02277}. SQ SEQUENCE 353 AA; 37743 MW; CED595ADA166E3B6 CRC64; MLKDFELYGN VDLAQNFIDS VKSGRFLFSF VISYTETSEI PGITFAGADK DSIQYTPPAD AEYLHYGYCK TIDKIPMTPD GKPTPGLLTK TALESASISH LTINAGSKIV PQLPFIESGL PFGKNILVQD AMNDTIVSHA VEYGQILGRI LASLTDCLLI GECIPGGTTT ALALLKALDY DAKVSSSIPE NPIELKNQIV TSALERIDSE HPYSIVAKIG DPMIPFVAGM LSSASSVSKV MLAGGTQMAA VLAFASKIGF NEENTAIGTT SYITNDETAN FKELIHEISD IPILSVDPGM KNSKFSGLRA FSEGFAKEGV GAGGSIISSM LKTGNNSETL LNLAEKEYQR LFT // ID A9A604_NITMS Unreviewed; 358 AA. AC A9A604; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 60. DE RecName: Full=Aspartate-semialdehyde dehydrogenase {ECO:0000256|RuleBase:RU004501}; DE EC=1.2.1.11 {ECO:0000256|RuleBase:RU004501}; GN OrderedLocusNames=Nmar_1586 {ECO:0000313|EMBL:ABX13482.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13482.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13482.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13482.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: L-aspartate 4-semialdehyde + phosphate + CC NADP(+) = L-4-aspartyl phosphate + NADPH. CC {ECO:0000256|RuleBase:RU004501}. CC -!- SIMILARITY: Belongs to the aspartate-semialdehyde dehydrogenase CC family. {ECO:0000256|RuleBase:RU004041}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13482.1; -; Genomic_DNA. DR ProteinModelPortal; A9A604; -. DR STRING; 436308.Nmar_1586; -. DR EnsemblBacteria; ABX13482; ABX13482; Nmar_1586. DR KEGG; nmr:Nmar_1586; -. DR eggNOG; arCOG00494; Archaea. DR eggNOG; COG0136; LUCA. DR HOGENOM; HOG000013358; -. DR KO; K00133; -. DR OMA; ASCHRVP; -. DR BioCyc; NMAR436308:GI3J-1630-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004073; F:aspartate-semialdehyde dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0003942; F:N-acetyl-gamma-glutamyl-phosphate reductase activity; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0006531; P:aspartate metabolic process; IEA:InterPro. DR GO; GO:0009097; P:isoleucine biosynthetic process; IEA:InterPro. DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:InterPro. DR GO; GO:0009086; P:methionine biosynthetic process; IEA:InterPro. DR GO; GO:0009088; P:threonine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR000319; Asp-semialdehyde_DH_CS. DR InterPro; IPR005676; Asp_semi-ald_DH_pep-lack. DR InterPro; IPR012080; Asp_semialdehyde_DH. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000534; Semialdehyde_DH_NAD-bd. DR InterPro; IPR012280; Semialdhyde_DH_dimer_dom. DR Pfam; PF01118; Semialdhyde_dh; 1. DR Pfam; PF02774; Semialdhyde_dhC; 1. DR PIRSF; PIRSF000148; ASA_dh; 1. DR SMART; SM00859; Semialdhyde_dh; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR00978; asd_EA; 1. DR PROSITE; PS01103; ASD; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|RuleBase:RU004501}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW NADP {ECO:0000256|RuleBase:RU004501}; KW Oxidoreductase {ECO:0000256|RuleBase:RU004501, KW ECO:0000313|EMBL:ABX13482.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 137 Semialdhyde_dh. FT {ECO:0000259|SMART:SM00859}. FT ACT_SITE 156 156 Acyl-thioester intermediate. FT {ECO:0000256|PIRSR:PIRSR000148-1}. FT ACT_SITE 249 249 Proton acceptor. FT {ECO:0000256|PIRSR:PIRSR000148-1}. SQ SEQUENCE 358 AA; 39574 MW; 011692D21425D4F4 CRC64; MEKKRVAIIG VTGSVGQEFV QSLNNHPWFE VTQIAASERS AGKNYLDAIR NEGGIIMWDV GGEIPDYIKE MTVKSIDELD TSQLDLIFSA VESQAARDIE TKMAAELPVV STSSAYRYEE DVPILIPGVN DEQVELIETQ KKNRNWKGFV TPLPNCTTTG LAITLKPLLE KYGAKKVMMT SMQAISGGGK SGVSAMGITD NILPYIPKEE GKVRLETRKI LGKLVDGKIE DADIRVSCTC TRVPVIDGHT ESVFVETSED IDPAKAKELY NGYNKNISVQ GLPSAPKEYY AFHEDPTRPQ PRMEREVGNG MTTTIGRVEK EELFDKGLKY MLFSHNKKMG SAKGAVLLAE MLYKKGKI // ID A9A355_NITMS Unreviewed; 435 AA. AC A9A355; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE RecName: Full=Ammonium transporter {ECO:0000256|RuleBase:RU362002}; GN OrderedLocusNames=Nmar_0588 {ECO:0000313|EMBL:ABX12484.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12484.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12484.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12484.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU362002}; CC Multi-pass membrane protein {ECO:0000256|RuleBase:RU362002}. CC -!- SIMILARITY: Belongs to the ammonia transporter channel CC (TC 1.A.11.2) family. {ECO:0000256|RuleBase:RU362002}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12484.1; -; Genomic_DNA. DR ProteinModelPortal; A9A355; -. DR STRING; 436308.Nmar_0588; -. DR EnsemblBacteria; ABX12484; ABX12484; Nmar_0588. DR KEGG; nmr:Nmar_0588; -. DR eggNOG; arCOG04397; Archaea. DR eggNOG; COG0004; LUCA. DR HOGENOM; HOG000017736; -. DR KO; K03320; -. DR OMA; NNSWIGN; -. DR BioCyc; NMAR436308:GI3J-611-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008519; F:ammonium transmembrane transporter activity; IEA:InterPro. DR Gene3D; 1.10.3430.10; -; 1. DR InterPro; IPR029020; Ammonium/urea_transptr. DR InterPro; IPR001905; Ammonium_transpt. DR InterPro; IPR024041; NH4_transpt_AmtB-like_dom. DR PANTHER; PTHR11730; PTHR11730; 1. DR Pfam; PF00909; Ammonium_transp; 1. DR SUPFAM; SSF111352; SSF111352; 1. DR TIGRFAMs; TIGR00836; amt; 1. PE 3: Inferred from homology; KW Ammonia transport {ECO:0000256|RuleBase:RU362002}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|RuleBase:RU362002}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|RuleBase:RU362002}; KW Transmembrane helix {ECO:0000256|RuleBase:RU362002}; KW Transport {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 12 33 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 45 65 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 96 117 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 129 150 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 162 183 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 195 216 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 228 248 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 260 280 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 286 304 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 316 335 Helical. {ECO:0000256|RuleBase:RU362002}. FT TRANSMEM 355 377 Helical. {ECO:0000256|RuleBase:RU362002}. FT DOMAIN 9 407 Ammonium_transp. FT {ECO:0000259|Pfam:PF00909}. SQ SEQUENCE 435 AA; 46074 MW; 3DE2CA0D1CA57791 CRC64; MVLDSGDTAW MLVAGSLVLL MIPALGLFES GLLRKKNAAS IFMQIFFGLA LLSVMWFVFG FSLSFSPSEH GLIGDMEWVF LKGVPSDDSL PFAPTIPGVL FVKFQLMFAC ITPLLLTGTI AERMKFSSFI VFISAWSMLI YYPLVHWVWG GGWLAQLGVV DFAGGIVIHT SVGMAALAAA IVLGKRRNYG PAIMIPHSIP LAVLGSSLLW LGWFGFNAGS ALAASGGVAG NTVIVTHMAS SVSALIWAGL SWVRTGKPSV VATINGAIAG LAGITPASGF VSAEHAFVIG IAIGVISYSG VVLFKEKLHI DDALDVSSVH GVAGIVGSLA IGIFASTMIN PGGVDGLLFG NPDQLWIQAV GVAVAAAIGF GGTWILMQII KHLMGIRVSA RVEDVGLDIS EHAESAYSDE EEFMLDMDTY TDSLQEKDEI FRKKK // ID A9A4Q4_NITMS Unreviewed; 535 AA. AC A9A4Q4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 41. DE SubName: Full=Multicopper oxidase type 3 {ECO:0000313|EMBL:ABX13032.1}; GN OrderedLocusNames=Nmar_1136 {ECO:0000313|EMBL:ABX13032.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13032.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13032.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13032.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13032.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1136; -. DR EnsemblBacteria; ABX13032; ABX13032; Nmar_1136. DR KEGG; nmr:Nmar_1136; -. DR eggNOG; arCOG03914; Archaea. DR eggNOG; COG2132; LUCA. DR OMA; WIRTHPA; -. DR BioCyc; NMAR436308:GI3J-1168-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 3. DR InterPro; IPR001117; Cu-oxidase. DR InterPro; IPR011706; Cu-oxidase_2. DR InterPro; IPR011707; Cu-oxidase_3. DR InterPro; IPR033138; Cu_oxidase_CS. DR InterPro; IPR002355; Cu_oxidase_Cu_BS. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00394; Cu-oxidase; 1. DR Pfam; PF07731; Cu-oxidase_2; 1. DR Pfam; PF07732; Cu-oxidase_3; 1. DR SUPFAM; SSF49503; SSF49503; 4. DR PROSITE; PS00079; MULTICOPPER_OXIDASE1; 1. DR PROSITE; PS00080; MULTICOPPER_OXIDASE2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 89 200 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07732}. FT DOMAIN 243 328 Plastocyanin-like. FT {ECO:0000259|Pfam:PF00394}. FT DOMAIN 413 534 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07731}. SQ SEQUENCE 535 AA; 59772 MW; EA99C6EA16F857DB CRC64; MKFYTILILF IIFSGSIFLS GIDSADALKA KNAKSPKSFG KATSNIVCGD KLCGEIPQNV SDGGAKLLST VSSVSVSNND TFDLTASQIT KNIDGKTLQM FGYNEQTPGP LLIVSQGDEI TVNFTNNLDL PTTVHWHGLR LDSASDGVPG VSQDPVLPGE TFQYSLKFPD TGIFFYHPHV KTEMQMDMGL YGNILVESKN SDNLPVDYEI PLFLDDISIV DNELQSFDPD ITTHTLMGRF GNTMIANGDA NLSLEFKQGD IVRFYLTNAA NTRTFDFGIE QQKIKLIADD ASEYERQEFV DSVIMASSER RTIDVLFEES GQYDITHSTS DKTYVLGTIS VTPSLNKIDS SFYSIEQNSD IVQEIDQFRK FFSDPPDLEL EFDIKTMSMD DHSMSMGVHE KEIDEIEWED EMPKMNAMSD DENTKWIIRD MNSGKEGFDI GYQVNVGDVK KIRLYNNPES AHPMQHPIHI HGQRVLVLSE DGIPNENLAW KDSVLVPTGK TVDILVDFSN PGNWVMHCHI LEHAEAGMIT EITVN // ID A9A553_NITMS Unreviewed; 386 AA. AC A9A553; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 41. DE SubName: Full=Glycosyl transferase family 2 {ECO:0000313|EMBL:ABX11962.1}; GN OrderedLocusNames=Nmar_0062 {ECO:0000313|EMBL:ABX11962.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11962.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11962.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11962.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11962.1; -; Genomic_DNA. DR ProteinModelPortal; A9A553; -. DR STRING; 436308.Nmar_0062; -. DR CAZy; GT2; Glycosyltransferase Family 2. DR EnsemblBacteria; ABX11962; ABX11962; Nmar_0062. DR KEGG; nmr:Nmar_0062; -. DR eggNOG; arCOG00894; Archaea. DR eggNOG; COG0463; LUCA. DR HOGENOM; HOG000283250; -. DR KO; K00721; -. DR OMA; NCITNAT; -. DR BioCyc; NMAR436308:GI3J-62-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0000271; P:polysaccharide biosynthetic process; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR001173; Glyco_trans_2-like. DR InterPro; IPR007267; GtrA. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00535; Glycos_transf_2; 1. DR Pfam; PF04138; GtrA; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11962.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 260 282 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 288 307 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 327 348 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 354 374 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 11 180 Glyco_trans_2-like. FT {ECO:0000259|Pfam:PF00535}. FT DOMAIN 261 380 GtrA. {ECO:0000259|Pfam:PF04138}. SQ SEQUENCE 386 AA; 43380 MW; 3A231E6143FB71C8 CRC64; MLVEKPNNQI SIIIPTYNES QNILNILKSI KENLPKNISA QAIVVDDNSP DGTGKIVDDY LKNLKKITNY TIEVIHRKTK DGLGSAILKG IQQATGDTIV VMDSDFSHPP QIIPKLVESI KKYQYDIAVA SRYIKGGKIE NWSAKRKLIS KFATLIAKKG LGINTKDPMS GFFAFKKNIL NGLNIDAIGY KILLEILVKT KNVSITEIPY TFQDRELGSS KLSMKTVFDY YKSVWKLYRY GKPEEEKEKR KSVKFLYKAA RFYTVGASGF VVNYLISLLF AGGISDMWYL HANVIGIIAS ISTNFILNKA WTFGDRDFRI KKTMSQYGKF ALFSSLGALV QLGMVYFLVD SAEISYPLAL ILAVATAAFG NFVLNKKFTF KEKLLN // ID A9A2G2_NITMS Unreviewed; 199 AA. AC A9A2G2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13201.1}; GN OrderedLocusNames=Nmar_1305 {ECO:0000313|EMBL:ABX13201.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13201.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13201.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13201.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13201.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1305; -. DR EnsemblBacteria; ABX13201; ABX13201; Nmar_1305. DR KEGG; nmr:Nmar_1305; -. DR eggNOG; arCOG08805; Archaea. DR eggNOG; ENOG4110ZRV; LUCA. DR HOGENOM; HOG000110196; -. DR OMA; DYMRASG; -. DR BioCyc; NMAR436308:GI3J-1338-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR InterPro; IPR010985; Ribbon_hlx_hlx. DR SUPFAM; SSF47598; SSF47598; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 199 AA; 23256 MW; 40A38B355A9421D9 CRC64; MLKEKMGANR QVHNQKKEST RSITYRLPEK LVNELETEAT MKSISQNVLV KQILEKYVQW DRFSNKIGMI PVPKTIVETL GSELDGRDID EIITLIFPMI KDTVLFIKGG YDLKRCIETL EDYMRASGMN SDHRIEGDVH IFLIQHELGM KWSVFTEQML TQVFRSFMPE KELKFQTTES TVILHVQLGS DFNEHDYHD // ID A9A586_NITMS Unreviewed; 131 AA. AC A9A586; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABX12285.1}; GN OrderedLocusNames=Nmar_0389 {ECO:0000313|EMBL:ABX12285.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12285.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12285.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12285.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12285.1; -; Genomic_DNA. DR ProteinModelPortal; A9A586; -. DR STRING; 436308.Nmar_0389; -. DR EnsemblBacteria; ABX12285; ABX12285; Nmar_0389. DR KEGG; nmr:Nmar_0389; -. DR eggNOG; arCOG02709; Archaea. DR eggNOG; ENOG41125FJ; LUCA. DR HOGENOM; HOG000108335; -. DR KO; K01759; -. DR OMA; HIQMEVA; -. DR BioCyc; NMAR436308:GI3J-406-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051213; F:dioxygenase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.180.10; -; 1. DR InterPro; IPR029068; Glyas_Bleomycin-R_OHBP_Dase. DR InterPro; IPR004360; Glyas_Fos-R_dOase_dom. DR Pfam; PF00903; Glyoxalase; 1. DR SUPFAM; SSF54593; SSF54593; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Dioxygenase {ECO:0000313|EMBL:ABX12285.1}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12285.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 123 Glyoxalase. {ECO:0000259|Pfam:PF00903}. SQ SEQUENCE 131 AA; 14514 MW; 94670A42EFFA5450 CRC64; MTDILKATSM DHVNMNVKDL AKTVEFYKNL FGFEIRKDDN SPNKMGAPSK IIGNDSIKLC LYEDPQVTPT GGIAHFGFHV ENFDDIMQKC KELGVEVLYD GPVDFEKSSS VYIKDPTGYD IELSKVSGGG L // ID A9A1T0_NITMS Unreviewed; 335 AA. AC A9A1T0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Oxidoreductase domain protein {ECO:0000313|EMBL:ABX12051.1}; GN OrderedLocusNames=Nmar_0153 {ECO:0000313|EMBL:ABX12051.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12051.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12051.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12051.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12051.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T0; -. DR STRING; 436308.Nmar_0153; -. DR EnsemblBacteria; ABX12051; ABX12051; Nmar_0153. DR KEGG; nmr:Nmar_0153; -. DR eggNOG; arCOG01622; Archaea. DR eggNOG; COG0673; LUCA. DR HOGENOM; HOG000023849; -. DR OMA; DWHPWEN; -. DR BioCyc; NMAR436308:GI3J-155-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000683; Oxidoreductase_N. DR Pfam; PF01408; GFO_IDH_MocA; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 90 GFO_IDH_MocA. {ECO:0000259|Pfam:PF01408}. SQ SEQUENCE 335 AA; 38195 MW; 03F35FDB30FF982F CRC64; MQILVVGLGS MGKRRIRCLQ KLGLKNIIGF DPRQDRRDES EKLYKISTVP TINDGLKLNP KCMIISTPPD LHYKYALVAM KNKIHFFTEV NLSSNDVQKI IKKLNGLSIL GLPSNTLIYH PLIKKLKTLI SKNQIGKTLT VYHHFGHYLP NWHPWEDYRD FYVSKRQTGA AREIVPFELV WLSYIFSSIK SVYGSIHKVS SLKTDIDDLY QAIIEFSNGI QCILVIDVIS DPAFSETKII GEKGVILCNH NEGILKIGKS SKWKTTKIES GEVAKGYKGN TPSESLYVAE IKNFLDSIKQ KKKPNYTFVE ELRILKVLDA IELSNRKSKK IVIKK // ID A9A2W6_NITMS Unreviewed; 155 AA. AC A9A2W6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 41. DE SubName: Full=Tetrahydromethanopterin S-methyltransferase 23 kD subunit {ECO:0000313|EMBL:ABX13643.1}; GN OrderedLocusNames=Nmar_1747 {ECO:0000313|EMBL:ABX13643.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13643.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13643.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13643.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13643.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1747; -. DR EnsemblBacteria; ABX13643; ABX13643; Nmar_1747. DR KEGG; nmr:Nmar_1747; -. DR eggNOG; arCOG03220; Archaea. DR eggNOG; COG4063; LUCA. DR HOGENOM; HOG000109036; -. DR KO; K00577; -. DR OMA; CTLSSMD; -. DR BioCyc; NMAR436308:GI3J-1794-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR InterPro; IPR030688; MeTrfase_MtrA/MtxA. DR Pfam; PF04208; MtrA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13643.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13643.1}. SQ SEQUENCE 155 AA; 17350 MW; 433D1014689DF90C CRC64; MNSLGNIIGE ICKVVLPIKQ EFYLGNPNSQ IAICTLASIS LLDDLKDSEL LSKVAIIGRL FSENKGIDSM IQYVYENKNI TKIILCGKEV WGHKSGHSLL QLHKNGIDKN SRIINSVSPD PYLTVSKDMI EYFQKNISIV DLIDETNLEV ISKKL // ID A9A1R7_NITMS Unreviewed; 115 AA. AC A9A1R7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:ABX12038.1}; GN OrderedLocusNames=Nmar_0138 {ECO:0000313|EMBL:ABX12038.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12038.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12038.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12038.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12038.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R7; -. DR STRING; 436308.Nmar_0138; -. DR EnsemblBacteria; ABX12038; ABX12038; Nmar_0138. DR KEGG; nmr:Nmar_0138; -. DR eggNOG; arCOG08267; Archaea. DR eggNOG; COG0736; LUCA. DR HOGENOM; HOG000014315; -. DR KO; K00997; -. DR OMA; IRRFENF; -. DR BioCyc; NMAR436308:GI3J-141-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008897; F:holo-[acyl-carrier-protein] synthase activity; IEA:InterPro. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:InterPro. DR Gene3D; 3.90.470.20; -; 1. DR HAMAP; MF_00101; AcpS; 1. DR InterPro; IPR008278; 4-PPantetheinyl_Trfase_SF. DR InterPro; IPR002582; ACPS. DR InterPro; IPR004568; Ppantetheine-prot_Trfase_dom. DR Pfam; PF01648; ACPS; 1. DR ProDom; PD004282; PPantethiene-prot_Trfase; 1. DR SUPFAM; SSF56214; SSF56214; 1. DR TIGRFAMs; TIGR00516; acpS; 1. DR TIGRFAMs; TIGR00556; pantethn_trn; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12038.1}. FT DOMAIN 3 110 ACPS. {ECO:0000259|Pfam:PF01648}. SQ SEQUENCE 115 AA; 13144 MW; 54DA4CE70F0153FA CRC64; MISVGVDIEK INRFESLLPE SSFIKKIFSP EEIKYCFSKK HPAETLAAKF AGKEAIIKAL NGLNYKSNSY HEIEILNKND NSPYVNLKNF LNYHISISLS HSDQYAIAFV LIFNK // ID A9A2V2_NITMS Unreviewed; 338 AA. AC A9A2V2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 50. DE RecName: Full=RNA 3'-terminal phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; DE Short=RNA cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; DE Short=RNA-3'-phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; DE EC=6.5.1.4 {ECO:0000256|HAMAP-Rule:MF_00200}; GN Name=rtcA {ECO:0000256|HAMAP-Rule:MF_00200}; GN OrderedLocusNames=Nmar_1733 {ECO:0000313|EMBL:ABX13629.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13629.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13629.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13629.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the conversion of 3'-phosphate to a 2',3'- CC cyclic phosphodiester at the end of RNA. The mechanism of action CC of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by CC ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA- CC N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'- CC phosphorus in the diester linkage to produce the cyclic end CC product. The biological role of this enzyme is unknown but it is CC likely to function in some aspects of cellular RNA processing. CC {ECO:0000256|HAMAP-Rule:MF_00200}. CC -!- CATALYTIC ACTIVITY: ATP + RNA 3'-terminal-phosphate = AMP + CC diphosphate + RNA terminal-2',3'-cyclic-phosphate. CC {ECO:0000256|HAMAP-Rule:MF_00200}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00200}. CC -!- SIMILARITY: Belongs to the RNA 3'-terminal cyclase family. Type 1 CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00200}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13629.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2V2; -. DR STRING; 436308.Nmar_1733; -. DR EnsemblBacteria; ABX13629; ABX13629; Nmar_1733. DR KEGG; nmr:Nmar_1733; -. DR eggNOG; arCOG04125; Archaea. DR eggNOG; COG0430; LUCA. DR HOGENOM; HOG000015264; -. DR KO; K01974; -. DR OMA; EVNLEIN; -. DR BioCyc; NMAR436308:GI3J-1778-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003963; F:RNA-3'-phosphate cyclase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006396; P:RNA processing; IEA:InterPro. DR Gene3D; 3.65.10.20; -; 2. DR HAMAP; MF_00200; RTC; 1. DR InterPro; IPR023797; RNA3'_phos_cyclase_dom. DR InterPro; IPR000228; RNA3'_term_phos_cyc. DR InterPro; IPR017770; RNA3'_term_phos_cyc_type_1. DR InterPro; IPR013792; RNA3'P_cycl/enolpyr_Trfase_a/b. DR PANTHER; PTHR11096; PTHR11096; 1. DR PANTHER; PTHR11096:SF0; PTHR11096:SF0; 1. DR Pfam; PF01137; RTC; 1. DR PIRSF; PIRSF005378; RNA3'_term_phos_cycl_euk; 1. DR SUPFAM; SSF55205; SSF55205; 1. DR TIGRFAMs; TIGR03399; RNA_3prim_cycl; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00200}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00200}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00200, ECO:0000313|EMBL:ABX13629.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00200}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 317 RTC. {ECO:0000259|Pfam:PF01137}. FT ACT_SITE 300 300 Tele-AMP-histidine intermediate. FT {ECO:0000256|HAMAP-Rule:MF_00200}. FT BINDING 102 102 ATP. {ECO:0000256|HAMAP-Rule:MF_00200}. SQ SEQUENCE 338 AA; 37319 MW; 79B4107E7D3ACDBB CRC64; MDFLKINGAH GEGGGQIIRS AITLSCITKQ PIHIENIRKN RKVSGLKPQH LTAIKILKKI SDCKVIGDEI GSTELKFIPG EIKSSKLSED VGTAGSISLI LQVLIPIVAI SQKNLEISIK GGTDVQWSPT MFYTQHILRE VYSRMGINFS FELKKRGYYP KGNGEVNLEI NPSNVKAISL SKRKTNRVKI LCTFSKIPNE KIESEIKKIK EKLNESFVVD VEIKEEALDS GASLLVYSID ENSIIGIDSL FDKKIESFDV DLDGFLEDIA VDENLADMIV VPASVAKGKT IFQVKKITKH LETNLFVTSK ISGCKYGIGK LPNGFEVIIE GTSYSSIK // ID A9A216_NITMS Unreviewed; 236 AA. AC A9A216; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12429.1}; GN OrderedLocusNames=Nmar_0533 {ECO:0000313|EMBL:ABX12429.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12429.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12429.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12429.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12429.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0533; -. DR EnsemblBacteria; ABX12429; ABX12429; Nmar_0533. DR KEGG; nmr:Nmar_0533; -. DR eggNOG; arCOG08681; Archaea. DR eggNOG; ENOG411114D; LUCA. DR HOGENOM; HOG000106271; -. DR OMA; LKGTIHA; -. DR BioCyc; NMAR436308:GI3J-555-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 236 AA; 27102 MW; A14311566145B744 CRC64; MLDPLVRFKD AHSKGIIPDN VYDLTIKRFP ITVEGINRIE KASGIRYPVA YVEPSLVISA PNPNSYEYGI LFARTIPVVF EEKFQVVIQI SAPLVAYGLK GTIHAILAHE FLHFLELIRK ISKMELLSDE ISGNLFENVY SDETRLFEPR VVFKDRTLLN HITKKFPAGF RDYKLEDKVT KFWIDKNLPK TNISLDSNTV KLSADALSKI KLDPTFVSKI EQLEEKSSKI RKKKLY // ID A9A2L1_NITMS Unreviewed; 444 AA. AC A9A2L1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Multicopper oxidase type 3 {ECO:0000313|EMBL:ABX13250.1}; GN OrderedLocusNames=Nmar_1354 {ECO:0000313|EMBL:ABX13250.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13250.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13250.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13250.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13250.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2L1; -. DR STRING; 436308.Nmar_1354; -. DR EnsemblBacteria; ABX13250; ABX13250; Nmar_1354. DR KEGG; nmr:Nmar_1354; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; arCOG03914; Archaea. DR eggNOG; ENOG4102U9J; Archaea. DR eggNOG; COG2132; LUCA. DR eggNOG; COG3794; LUCA. DR OMA; TFAYHCH; -. DR BioCyc; NMAR436308:GI3J-1388-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0050421; F:nitrite reductase (NO-forming) activity; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 3. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR011706; Cu-oxidase_2. DR InterPro; IPR011707; Cu-oxidase_3. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR001287; NO2-reductase_Cu. DR Pfam; PF00127; Copper-bind; 1. DR Pfam; PF07731; Cu-oxidase_2; 1. DR Pfam; PF07732; Cu-oxidase_3; 1. DR PRINTS; PR00695; CUNO2RDTASE. DR SUPFAM; SSF49503; SSF49503; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 59 167 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07732}. FT DOMAIN 195 292 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07731}. FT DOMAIN 373 444 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 444 AA; 49623 MW; BF3D8A5F8463F08F CRC64; MVKPNTIYIV AGIIIGFSIA FAILLQSPEI QTTVADSSDT FPKFKNPNPQ TLSYTLIAQD AEIEVSPGVR AKVWTYNGTV PAPTLRFSEG DDVTVKFVND TPYAHTIHFH GTHDSANDGV FPMIMPGEEY TYHFVAEEAG LFMYHCHAFP TSEHVRMGMF GTMIIDPAIR PMDPAREYFF TLSEFDPNNA LEHFTEFYPI NGYAGQYMDN PIRVVSGELT RFYVVGIGGV LQSPFHVHST IMKVYPSGIL WNEPYYAQTH LIGNGDTAII EATWTQPGMY LFHVHGIQEE RGSMAMIEVL EDASSLSDVQ RPSNNKGSYS MVEWQEDLIR TLEQPQLISY ENLGESAAIS SEKVSADKVS IVKDSWNPEI TESYDPIAIQ VDSGTTVTWT NDDSVVHTVT DNENSFDSGF IQAGNTWSYS FDNPGEFDYI CTLHPWMKGT ISVN // ID A9A3W0_NITMS Unreviewed; 198 AA. AC A9A3W0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13660.1}; GN OrderedLocusNames=Nmar_1764 {ECO:0000313|EMBL:ABX13660.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13660.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13660.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13660.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13660.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1764; -. DR EnsemblBacteria; ABX13660; ABX13660; Nmar_1764. DR KEGG; nmr:Nmar_1764; -. DR eggNOG; arCOG08028; Archaea. DR eggNOG; ENOG4111013; LUCA. DR OMA; GHESIPA; -. DR BioCyc; NMAR436308:GI3J-1811-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 198 AA; 22723 MW; 40CAC5E3A26A4407 CRC64; MLDKSPEQIF DSELVHIQNE FKEKVPNIVL CSEPFHKVEF LNKLINSVEK PVIFVDMDLL YTGYVESGII QKKNNLTIFH PTKENWQEKF SEIITKVSKE KFLVIIDSFN GVHNMFEDLE SAIFINSCIM LLASLGKDVD SSIIITAMAR KKEDEGWILT PGGKQIIKSA KTGVYLLKKT ENNLIIREIK ENSKIFKI // ID A9A5R0_NITMS Unreviewed; 400 AA. AC A9A5R0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Integrase family protein {ECO:0000313|EMBL:ABX13065.1}; GN OrderedLocusNames=Nmar_1169 {ECO:0000313|EMBL:ABX13065.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13065.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13065.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13065.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13065.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5R0; -. DR STRING; 436308.Nmar_1169; -. DR EnsemblBacteria; ABX13065; ABX13065; Nmar_1169. DR KEGG; nmr:Nmar_1169; -. DR eggNOG; arCOG01245; Archaea. DR eggNOG; COG0582; LUCA. DR BioCyc; NMAR436308:GI3J-1201-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR SUPFAM; SSF56349; SSF56349; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 355 382 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 400 AA; 47125 MW; 8A1B8E98E5B68244 CRC64; MSWHHLMEIT LEKINTRSDP YQLFLDSIKH KETKRRYKNL LYTFLKLIPN EIYQDALGEK PPNNEATTLA KFFVDAARKS SDLASDIIAA YIKEDKKRVE AGEISPQTLP NHIKPIKVLL DSNRIAVHWK SLSKLYPRIT RGSNDRAYTT EEMQRMLEVS NDITDKVIVT MFASAGFRLE SWDYFTWKDV VFFRNPDDSF RGAALCVYRN DPEQYWTFIT PEACNYLDMY REKWKADIGV YPNPDDPLLK AVKYPTIHRL NHKGVRRRVE NVVRAIGLRP PLPPGRRRHE VKLDHGFRKS FNTNLRRAKV DFLDKEDMMG HKTGLEKHYE RYAEEDFERF SEYEKAIPFL TISDTERVKF ENQKLKEAKK NLEEQIPTLV DDAVERVKKE LTQKGWTVTE // ID A9A1P8_NITMS Unreviewed; 470 AA. AC A9A1P8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13563.1}; GN OrderedLocusNames=Nmar_1667 {ECO:0000313|EMBL:ABX13563.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13563.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13563.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13563.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13563.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1667; -. DR EnsemblBacteria; ABX13563; ABX13563; Nmar_1667. DR KEGG; nmr:Nmar_1667; -. DR eggNOG; arCOG03914; Archaea. DR eggNOG; COG2132; LUCA. DR HOGENOM; HOG000023842; -. DR KO; K00368; -. DR OMA; ADEMELQ; -. DR BioCyc; NMAR436308:GI3J-1712-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0050421; F:nitrite reductase (NO-forming) activity; IEA:InterPro. DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 3. DR InterPro; IPR011707; Cu-oxidase_3. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR001287; NO2-reductase_Cu. DR Pfam; PF07732; Cu-oxidase_3; 1. DR PRINTS; PR00695; CUNO2RDTASE. DR SUPFAM; SSF49503; SSF49503; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 92 199 Plastocyanin-like. FT {ECO:0000259|Pfam:PF07732}. SQ SEQUENCE 470 AA; 50860 MW; 8141E15C157EFDE5 CRC64; MNRRINALFT IAAVAVIGAT LFGSTYTQTQ IAGQSLDMQS MDVDVLEQIH QMGGLQLVMP QAFAETDCGV LENSGRNVVE FNLTGESVEL PIMGGKTYNA MTFNQQVPGP TLRVTQGDVV KMTLTIPDDE VTGHGNDMHA SQISAAAFES VNPGETAQYC YIAEVAGTFK YHCSGVKLIG MDQHVLSGMY GIAIVDPANG YKKLMVEKTS GSGELDRKFY DADALEFQLQ YNQLYLTPEG NYDAGAMFQH HNTATVVNGM QFGYVPNMAH NLLVKGDVNK NIFVAQPWNG LENKQYQSQL LFVENDQHVR LFVQNNGNEP VFFHIVGEIL DRVVQGNRVQ SAGTETWNIG GSQGAIIDLV FDEPGVYAAV NHDYAAIYTG AASVFVAGDP FGLNPVLVEK GVIPAPVASY AYALGNPSDA VPPMGEQSIA HPAINIHGLY TDEVASEMQE SGDYVALWEV IPVVAEILTS // ID A9A2S1_NITMS Unreviewed; 36 AA. AC A9A2S1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13598.1}; GN OrderedLocusNames=Nmar_1702 {ECO:0000313|EMBL:ABX13598.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13598.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13598.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13598.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13598.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1702; -. DR EnsemblBacteria; ABX13598; ABX13598; Nmar_1702. DR KEGG; nmr:Nmar_1702; -. DR BioCyc; NMAR436308:GI3J-1747-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 26 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 36 AA; 3484 MW; 3E3A947FC6BB6AF2 CRC64; MAEAGMAAFG AAAGVAIALA VVCFALRGKG HPEPLD // ID A9A562_NITMS Unreviewed; 101 AA. AC A9A562; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12261.1}; GN OrderedLocusNames=Nmar_0365 {ECO:0000313|EMBL:ABX12261.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12261.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12261.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12261.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12261.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0365; -. DR EnsemblBacteria; ABX12261; ABX12261; Nmar_0365. DR KEGG; nmr:Nmar_0365; -. DR eggNOG; arCOG08680; Archaea. DR eggNOG; ENOG411107D; LUCA. DR BioCyc; NMAR436308:GI3J-381-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 18 40 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 101 AA; 10876 MW; 1C59895E6A843B41 CRC64; MSAIPNKKIK KSSDYKSLVI IIGIVSSIGL AGFAYLMYYV EPVEVLETVK IVAVTDSGCI AETLDGHAVN IGECNAEPGQ YISALVDQKV KERAELMNPT N // ID A9A160_NITMS Unreviewed; 295 AA. AC A9A160; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABX12021.1}; GN OrderedLocusNames=Nmar_0121 {ECO:0000313|EMBL:ABX12021.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12021.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12021.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12021.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12021.1; -; Genomic_DNA. DR ProteinModelPortal; A9A160; -. DR STRING; 436308.Nmar_0121; -. DR EnsemblBacteria; ABX12021; ABX12021; Nmar_0121. DR KEGG; nmr:Nmar_0121; -. DR eggNOG; arCOG01369; Archaea. DR eggNOG; COG0451; LUCA. DR KO; K01784; -. DR OMA; NTHEVSI; -. DR BioCyc; NMAR436308:GI3J-124-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0050662; F:coenzyme binding; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR001509; Epimerase_deHydtase_N. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF01370; Epimerase; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 228 Epimerase. {ECO:0000259|Pfam:PF01370}. SQ SEQUENCE 295 AA; 33440 MW; 57C0CABC0717AD21 CRC64; MKKQIKILVT GASGMLGNKI ISELSNSDYQ SLGISKKNTH TINNTIIKKC DITNYKQLKK IFDAFKPNII IHTASITGNI ECEENPEKTF LVNCLGTFNI LNLMKKNGAK IIFCSSREVY GNSKKKVTEK DLEFPINLNG ITKITSENLI KKFHQTYNVQ YVILRFTNFY GDLNSKRGIS LMIKNAIKNK QVTIYGGKQI LNLLHIDDAV KAILLSIKYK NSNTFNIGSD EKTTLPKLIK IIENNINQKI KINKKNARVI EPQKFVINIK KAKNELGFTP NFTLDLGIKK LVKEI // ID A9A3R4_NITMS Unreviewed; 129 AA. AC A9A3R4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE RecName: Full=30S ribosomal protein S17e {ECO:0000256|HAMAP-Rule:MF_00511}; GN Name=rps17e {ECO:0000256|HAMAP-Rule:MF_00511}; GN OrderedLocusNames=Nmar_1430 {ECO:0000313|EMBL:ABX13326.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13326.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13326.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13326.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S17e family. CC {ECO:0000256|HAMAP-Rule:MF_00511}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13326.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3R4; -. DR STRING; 436308.Nmar_1430; -. DR EnsemblBacteria; ABX13326; ABX13326; Nmar_1430. DR KEGG; nmr:Nmar_1430; -. DR eggNOG; arCOG01885; Archaea. DR eggNOG; COG1383; LUCA. DR KO; K02962; -. DR OMA; THKSKFG; -. DR BioCyc; NMAR436308:GI3J-1465-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.60.20; -; 1. DR HAMAP; MF_00511; Ribosomal_S17e; 1. DR InterPro; IPR001210; Ribosomal_S17e. DR PANTHER; PTHR10732; PTHR10732; 1. DR Pfam; PF00833; Ribosomal_S17e; 1. DR SUPFAM; SSF116820; SSF116820; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00511}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00511}. SQ SEQUENCE 129 AA; 14350 MW; 56038C5FCB419150 CRC64; MDRIKRLSYE VLETHKSKFG EDFADNKKIL NEVSIVRSKG LKNEIAGYIT NYIKKEIREE KAKKAQAEAS KSLEQEAQVE PEPVEATENT EAPAAEETPE TEAPAVEATE NTEAPAAETT PETPEEKSE // ID A9A256_NITMS Unreviewed; 171 AA. AC A9A256; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Ferritin Dps family protein {ECO:0000313|EMBL:ABX12469.1}; GN OrderedLocusNames=Nmar_0573 {ECO:0000313|EMBL:ABX12469.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12469.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12469.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12469.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ferritin-like diiron domain. CC {ECO:0000256|RuleBase:RU003668}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12469.1; -; Genomic_DNA. DR ProteinModelPortal; A9A256; -. DR STRING; 436308.Nmar_0573; -. DR EnsemblBacteria; ABX12469; ABX12469; Nmar_0573. DR KEGG; nmr:Nmar_0573; -. DR eggNOG; arCOG01095; Archaea. DR eggNOG; COG1528; LUCA. DR HOGENOM; HOG000223382; -. DR KO; K02217; -. DR OMA; CEDKGFE; -. DR BioCyc; NMAR436308:GI3J-596-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0008199; F:ferric iron binding; IEA:InterPro. DR GO; GO:0006879; P:cellular iron ion homeostasis; IEA:InterPro. DR GO; GO:0006826; P:iron ion transport; IEA:InterPro. DR Gene3D; 1.20.1260.10; -; 1. DR InterPro; IPR001519; Ferritin. DR InterPro; IPR009040; Ferritin-like_diiron. DR InterPro; IPR009078; Ferritin-like_SF. DR InterPro; IPR012347; Ferritin-rel. DR InterPro; IPR008331; Ferritin_DPS_dom. DR PANTHER; PTHR11431; PTHR11431; 1. DR Pfam; PF00210; Ferritin; 1. DR SUPFAM; SSF47240; SSF47240; 1. DR PROSITE; PS50905; FERRITIN_LIKE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 146 Ferritin-like diiron. FT {ECO:0000259|PROSITE:PS50905}. SQ SEQUENCE 171 AA; 18949 MW; A604688ED40C1D06 CRC64; MRISPKMKKA LNDQIALEAA ASNSYLAMAS WCEVTGYQGG ADFFYAQSDE EKTHMLKIIH YLNDIGATAT IPAVKAPTSS YKSLEGVVKT ALKSEQTVTK AIHKMVELSH KEKDHCTYAF LEWFVNEQVQ EETKFETILQ KFDLLGRDKL GINEVDKFLA AQAGDSAPPA A // ID A9A4L2_NITMS Unreviewed; 130 AA. AC A9A4L2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Pyridoxamine 5'-phosphate oxidase family protein {ECO:0000313|EMBL:ABX12990.1}; GN OrderedLocusNames=Nmar_1094 {ECO:0000313|EMBL:ABX12990.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12990.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12990.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12990.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12990.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4L2; -. DR STRING; 436308.Nmar_1094; -. DR EnsemblBacteria; ABX12990; ABX12990; Nmar_1094. DR KEGG; nmr:Nmar_1094; -. DR eggNOG; arCOG00516; Archaea. DR eggNOG; ENOG410YW42; LUCA. DR HOGENOM; HOG000047646; -. DR KO; K07006; -. DR OMA; TPVWFVA; -. DR BioCyc; NMAR436308:GI3J-1125-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004733; F:pyridoxamine-phosphate oxidase activity; IEA:InterPro. DR Gene3D; 2.30.110.10; -; 1. DR InterPro; IPR019965; PPOX_F420-dep_Rv2061_put. DR InterPro; IPR011576; Pyridox_Oxase_FMN-bd. DR InterPro; IPR012349; Split_barrel_FMN-bd. DR Pfam; PF01243; Pyridox_oxidase; 1. DR SUPFAM; SSF50475; SSF50475; 1. DR TIGRFAMs; TIGR03666; Rv2061_F420; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 10 92 Pyridox_oxidase. FT {ECO:0000259|Pfam:PF01243}. SQ SEQUENCE 130 AA; 15000 MW; 9D64F2AD603F6A7F CRC64; MHPKIEAKLK YLEEIESEKY ISVETYRKNG DPVKTPVWFT IKNGLIFVVT RDQTGKVKRL KNNTQVKIAT CTIKGEIKGK WVSGVAEILD EEKTKDAVKR RDKKYGFFSK MARFLTKSKG ELLAFSIKLK // ID A9A3Q7_NITMS Unreviewed; 141 AA. AC A9A3Q7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13319.1}; GN OrderedLocusNames=Nmar_1423 {ECO:0000313|EMBL:ABX13319.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13319.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13319.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13319.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13319.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1423; -. DR EnsemblBacteria; ABX13319; ABX13319; Nmar_1423. DR KEGG; nmr:Nmar_1423; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR OMA; NSIRFAG; -. DR BioCyc; NMAR436308:GI3J-1458-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 141 AA; 16015 MW; F0D1B79834A75045 CRC64; MSIIVIFYEI HKSPMAQELN YDGVMHRLFD LDENIRFAAV ANMNGEILAT HSRPNTNLYL SHDDTLDTIQ HAISAWKSRE KHYSKVGEGL YTLAVYEKLR RATIPLPSGN LLLVTIDNSG GQQQIMEKIL NEVKVHDYTT G // ID A9A4I4_NITMS Unreviewed; 428 AA. AC A9A4I4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 66. DE SubName: Full=Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ABX12962.1}; GN OrderedLocusNames=Nmar_1066 {ECO:0000313|EMBL:ABX12962.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12962.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12962.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12962.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase CC family. {ECO:0000256|RuleBase:RU003746}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12962.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4I4; -. DR STRING; 436308.Nmar_1066; -. DR EnsemblBacteria; ABX12962; ABX12962; Nmar_1066. DR KEGG; nmr:Nmar_1066; -. DR eggNOG; arCOG00406; Archaea. DR eggNOG; COG0017; LUCA. DR HOGENOM; HOG000226032; -. DR KO; K01876; -. DR OMA; EAAFMDY; -. DR BioCyc; NMAR436308:GI3J-1097-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004815; F:aspartate-tRNA ligase activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0006422; P:aspartyl-tRNA aminoacylation; IEA:InterPro. DR Gene3D; 2.40.50.140; -; 1. DR InterPro; IPR004364; aa-tRNA-synt_II. DR InterPro; IPR018150; aa-tRNA-synt_II-like. DR InterPro; IPR006195; aa-tRNA-synth_II. DR InterPro; IPR004523; Asp-tRNA_synthase_arc. DR InterPro; IPR002312; Asp/Asn-tRNA-synth_IIb. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR004365; NA-bd_OB_tRNA. DR PANTHER; PTHR22594; PTHR22594; 1. DR PANTHER; PTHR22594:SF10; PTHR22594:SF10; 1. DR Pfam; PF00152; tRNA-synt_2; 1. DR Pfam; PF01336; tRNA_anti-codon; 1. DR PRINTS; PR01042; TRNASYNTHASP. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00458; aspS_nondisc; 1. DR PROSITE; PS50862; AA_TRNA_LIGASE_II; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|RuleBase:RU003747, KW ECO:0000313|EMBL:ABX12962.1}; KW ATP-binding {ECO:0000256|RuleBase:RU003747}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|RuleBase:RU003747, ECO:0000313|EMBL:ABX12962.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU003747}; KW Protein biosynthesis {ECO:0000256|RuleBase:RU003747}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 134 428 AA_TRNA_LIGASE_II. FT {ECO:0000259|PROSITE:PS50862}. SQ SEQUENCE 428 AA; 48931 MW; 3263124FA447C4D4 CRC64; MVFVKTHDIS ELTSELIGKQ VVLGGWIEDL RKLGKMSFIT LRDVSGISQV IVKGELNDNL GEINRQSVVS VKGIVQETKA RDFAFEIKAE EIEVLGKAIH PLPVDPIGRV ESNIDTRLNH RALDMRNQKT ASIFKLRHYV LQSLRKTLVG KKFIEITTPK IIGSASEGGA NLFSLEYFGK KAYLAQSPQL YKEQMTIGLE RVFEISNFYR AENSHTGRHL SEFTSIDIEA AFMDYNDVMD VLESLVMDVY KFTSENCKKE QEIIGHTIEV PKSPFERITY NQCIEELKSA GEKVEFGDDL LDSHLRIIGN NHPGFFFLTD WPMKLKPFYI REKDEDPELS RSFDLQYGYL ELSSGGTRLH NPERLKNRLR EQDLDPAQFT DHLKAFDWGM PPHSGWGMGL DRLMTTLIGI DNVREVVLYP RDPDRLSP // ID A9A3L1_NITMS Unreviewed; 903 AA. AC A9A3L1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Fibronectin type III domain protein {ECO:0000313|EMBL:ABX12943.1}; GN OrderedLocusNames=Nmar_1047 {ECO:0000313|EMBL:ABX12943.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12943.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12943.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12943.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12943.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3L1; -. DR STRING; 436308.Nmar_1047; -. DR EnsemblBacteria; ABX12943; ABX12943; Nmar_1047. DR KEGG; nmr:Nmar_1047; -. DR eggNOG; arCOG03561; Archaea. DR eggNOG; arCOG05978; Archaea. DR eggNOG; arCOG06534; Archaea. DR eggNOG; ENOG410XSQC; LUCA. DR BioCyc; NMAR436308:GI3J-1078-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR Gene3D; 2.120.10.30; -; 2. DR Gene3D; 2.60.40.10; -; 3. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. DR InterPro; IPR015919; Cadherin-like. DR InterPro; IPR003961; FN3_dom. DR InterPro; IPR013783; Ig-like_fold. DR InterPro; IPR001258; NHL_repeat. DR InterPro; IPR013017; NHL_repeat_subgr. DR Pfam; PF00041; fn3; 3. DR Pfam; PF01436; NHL; 2. DR SMART; SM00060; FN3; 3. DR SUPFAM; SSF49265; SSF49265; 2. DR SUPFAM; SSF49313; SSF49313; 1. DR PROSITE; PS50853; FN3; 3. DR PROSITE; PS51125; NHL; 6. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 355 450 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 452 545 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. FT DOMAIN 563 660 Fibronectin type-III. FT {ECO:0000259|PROSITE:PS50853}. SQ SEQUENCE 903 AA; 97972 MW; D725AACC28D96B8E CRC64; MIAIIPTAYA DVEFSFKFGT LGSDDDELDN PTDVIVKSNG REIYVVDNNN NRINVFDDDG DADFLYGTFC NVAQIQDCND NADGAEEDGD GQFNTPLYIA MDALGKFFVV DSENERVQVF DDDGEFQFKL GSSDSGDDEY LGGAQGVTIQ DSSRKIFVSN TENDSISVFG STGNFLFDFD SFNGNDDFTN PSEMIIDNSN DLLYVADSGN DRIVIFEIVD GTTCPDGTIE SVDGICYVKE FGSSGDDEGE FDDPSGLALN SENDLLYVSD SDNDRIQIFE IVDGTTCPDG TDEIIDGVCF VDEFGSTGTA DGQFDSPLGI ALDNSNDLLY VADSKNDRIQ VFDLNSEPAV QTPEKPVNVD ASPVSPTSII LTWDAPEQHE TIPEITGYKI EYRIGSENYI AITPDASSNV FSFVHDGLSE SETYSYRVYS INSVGTSSAS SIATVKPEST TTPVALTASA ISPSQIKLSW MAPSETFQQS ISGYNIKRVL TPGVYDDVGS TNGQTLTYVV SNLATDKTYT YAVTANIGFG QTGESNTASA TPRSDSTDTT EDPLVSTSVD MTVPSSPIKL TASTKTSTSI TLTWVSPTDD GNSEITGYKI ESKKDNGSFS TVVEDTQNSS TTYVHSELVE NSKYAYRVSA INSVGVSEPS NESSATAKIT GLALSPMGKL TVNEGQLLSF AVKLTDNTIK DPVFSLKNAP SGAKIISNTG AFAWTPSSSD GGQTYNIVVE VRKNELFDSQ TIEIKVNDSS VSEPISEPTS EPTSEPVKTE PGELGLASFV DESVDPQNYV DRYNNEPNYK KWFDDNYSEY DSIYQAVGLE KPPQIPADFV DESMDPYYYV ARYNIDQKFQ KWFDDNYSQY SSIGQAVDFH DSGEPQKVYG FCGTGTKLID GVCTVIRTTE STP // ID A9A5W6_NITMS Unreviewed; 289 AA. AC A9A5W6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 48. DE RecName: Full=Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; DE EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154}; DE AltName: Full=Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; DE AltName: Full=Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; GN Name=ctaB {ECO:0000256|HAMAP-Rule:MF_00154}; GN OrderedLocusNames=Nmar_1225 {ECO:0000313|EMBL:ABX13121.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13121.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13121.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13121.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Converts heme B (protoheme IX) to heme O by substitution CC of the vinyl group on carbon 2 of heme B porphyrin ring with a CC hydroxyethyl farnesyl side group. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- PATHWAY: Porphyrin-containing compound metabolism; heme O CC biosynthesis; heme O from protoheme: step 1/1. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_00154}; Multi-pass membrane protein {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- MISCELLANEOUS: Carbon 2 of the heme B porphyrin ring is defined CC according to the Fischer nomenclature. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC -!- SIMILARITY: Belongs to the UbiA prenyltransferase family. CC Protoheme IX farnesyltransferase subfamily. {ECO:0000256|HAMAP- CC Rule:MF_00154}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13121.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1225; -. DR EnsemblBacteria; ABX13121; ABX13121; Nmar_1225. DR KEGG; nmr:Nmar_1225; -. DR eggNOG; arCOG00479; Archaea. DR eggNOG; COG0109; LUCA. DR HOGENOM; HOG000237291; -. DR KO; K02301; -. DR OMA; TSVWSTF; -. DR BioCyc; NMAR436308:GI3J-1258-MONOMER; -. DR UniPathway; UPA00834; UER00712. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0008495; F:protoheme IX farnesyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0048034; P:heme O biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00154; CyoE_CtaB; 1. DR InterPro; IPR006369; Protohaem_IX_farnesylTrfase. DR InterPro; IPR000537; UbiA_prenyltransferase. DR InterPro; IPR030470; UbiA_prenylTrfase_CS. DR Pfam; PF01040; UbiA; 1. DR TIGRFAMs; TIGR01473; cyoE_ctaB; 1. DR PROSITE; PS00943; UBIA; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00154}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Heme biosynthesis {ECO:0000256|HAMAP-Rule:MF_00154}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_00154}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00154, KW ECO:0000313|EMBL:ABX13121.1}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_00154}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00154}. FT TRANSMEM 8 28 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 35 55 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 84 104 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 107 127 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 135 155 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 159 179 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 213 233 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. FT TRANSMEM 269 289 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00154}. SQ SEQUENCE 289 AA; 31443 MW; CC825EDD042E6472 CRC64; MEISKPRIVV LLVITAVTSM YAASKLVPGT PELDYWAYLH IIIAGALASA GSSALNHYYD KDIDPKMERT SKRPIPSGRM AASHVLIYGL AVSCISVIYG YFALNPVSAF FIAVGIFSYV IIYTAWLKRL NTSNIVIGGI AGSAAAWAGW SAATGSMDLL GFLVGFLVFV WTPSHFWCLA MKIKDEYAQA EVPMLPVVIG MQKTSKYILG NTIILLPYSL ILSFIPDGMG VVYTIIAAVS GGLMLAYHYK LTKTPTSEFA WKAYKVTAPY LTIIFVAVAL DAAFHIPLF // ID A9A609_NITMS Unreviewed; 581 AA. AC A9A609; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13487.1}; GN OrderedLocusNames=Nmar_1591 {ECO:0000313|EMBL:ABX13487.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13487.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13487.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13487.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13487.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1591; -. DR EnsemblBacteria; ABX13487; ABX13487; Nmar_1591. DR KEGG; nmr:Nmar_1591; -. DR eggNOG; arCOG07442; Archaea. DR eggNOG; ENOG410Y0R8; LUCA. DR OMA; NPEETIM; -. DR BioCyc; NMAR436308:GI3J-1635-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 265 292 {ECO:0000256|SAM:Coils}. FT COILED 294 321 {ECO:0000256|SAM:Coils}. FT COILED 379 427 {ECO:0000256|SAM:Coils}. FT COILED 477 527 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 581 AA; 65630 MW; E81C4314272D920F CRC64; MDKWADYLIS EVSYDANHLI SVAIRHQDTD KGITKGTPVD RLTISSDIKN GISYITIYSG KNSWKQGHRI RTFSIDGEPF LRIDGNKVEL DSLGDLPVVT SIDLDELDLA PEPVADEPIP EPAPPSPRGS LPKESAEELP QELDLAPEPV ADEPIPEPAP PSPRGSLPKE SAEELPQELD LAPEPVADEP IPEPEEEEAT PEQLARLEQL EKQIQELESK PEPAPPSPRG SLPKESAEEL PQELDLAPEP VADEPIPEPE EEEATPEQLA RLEQLEKQIQ ELESKPEPEE EEATPEQLAR LEQLEKQIQE LESKPEPEEE EATPEQLARL EQLEKQIQEL ESKPEPAPPS PRGSLPKESA EELPQELDLA PELEDEEATP EQFEQFEQLE KQIQELESKP ELEEEATPEQ FEQLDELQKQ IDELETKLSE KPVPEIKSEP EVEPIVEEYS EFNDLEDQID ELENELTSKL HPSDEATEEQ ISRVRELEKE IEKLESADIE HEIIQTLQKQ NKKLDEIEKK LEQSSKISSE TSSIEAYCVK CKTKRKIKNP EETIMKNGRP AVKGTCSTCN CKVFRIGKMK K // ID A9A4A7_NITMS Unreviewed; 292 AA. AC A9A4A7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12596.1}; GN OrderedLocusNames=Nmar_0700 {ECO:0000313|EMBL:ABX12596.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12596.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12596.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12596.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12596.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0700; -. DR EnsemblBacteria; ABX12596; ABX12596; Nmar_0700. DR KEGG; nmr:Nmar_0700; -. DR eggNOG; arCOG04054; Archaea. DR eggNOG; ENOG4111F6A; LUCA. DR HOGENOM; HOG000105693; -. DR OMA; VIFIPKW; -. DR BioCyc; NMAR436308:GI3J-725-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 292 AA; 32707 MW; A86383C5EDA49ED9 CRC64; MTQDDIEIIG KNVKDMYGTF MGKVAGTITD IDGSIQSVGV DCGSQGLQQI QYEQLVVQGD VVIFIPKWRL DSQRLIREKQ LTLRRLKALI DIVSENDDMK EDAEIIHEKY KSKLVSLDET ESEIKAKLEA RLTELDEQMK SAKMLSFDAK VQFKSNEISE ETFETVKSCT TEVIEHVTHE VSEIENVKSR IADLGLEVQE ITAPPTPDIQ ESAVSYLETN EPQQVVQTSL PEAPTEPVTT PSEPIEVSAA PMPEPPTESE VTFAFPEPPQ QVTPETPKDD NDNDWLARME AQ // ID A9A5H6_NITMS Unreviewed; 149 AA. AC A9A5H6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12687.1}; GN OrderedLocusNames=Nmar_0791 {ECO:0000313|EMBL:ABX12687.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12687.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12687.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12687.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12687.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12687; ABX12687; Nmar_0791. DR KEGG; nmr:Nmar_0791; -. DR eggNOG; arCOG01713; Archaea. DR eggNOG; COG5440; LUCA. DR BioCyc; NMAR436308:GI3J-817-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR018747; DUF2299. DR Pfam; PF10061; DUF2299; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 149 AA; 17155 MW; 27F2234A61E1CBA3 CRC64; MNASRMRDNV ERWLIHEGLK FEDIKNPENT FQILVKHAGP AGVPVEIFEP KAQQGVLVIG SKVNMKNNQI ARYLGFSEDE KAKFEKKVAD YCYTIQAINK NTTEDGKRKI GVYVVLDKEG NINQQELFDA MDRVSEMHEK TARFLMKTF // ID A9A467_NITMS Unreviewed; 199 AA. AC A9A467; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE RecName: Full=30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; GN Name=rps7 {ECO:0000256|HAMAP-Rule:MF_00480}; GN OrderedLocusNames=Nmar_0355 {ECO:0000313|EMBL:ABX12251.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12251.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12251.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12251.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly to 16S rRNA where it nucleates assembly of the head CC domain of the 30S subunit. Is located at the subunit interface CC close to the decoding center. {ECO:0000256|HAMAP-Rule:MF_00480}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_00480}. CC -!- SIMILARITY: Belongs to the ribosomal protein S7P family. CC {ECO:0000256|HAMAP-Rule:MF_00480}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12251.1; -; Genomic_DNA. DR ProteinModelPortal; A9A467; -. DR STRING; 436308.Nmar_0355; -. DR EnsemblBacteria; ABX12251; ABX12251; Nmar_0355. DR KEGG; nmr:Nmar_0355; -. DR eggNOG; arCOG04254; Archaea. DR eggNOG; COG0049; LUCA. DR HOGENOM; HOG000039066; -. DR KO; K02992; -. DR OMA; KMNIVER; -. DR BioCyc; NMAR436308:GI3J-370-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.455.10; -; 1. DR HAMAP; MF_00480_A; Ribosomal_S7_A; 1. DR InterPro; IPR000235; Ribosomal_S5/S7. DR InterPro; IPR005716; Ribosomal_S5/S7_euk/arc. DR InterPro; IPR026018; Ribosomal_S7_arc. DR InterPro; IPR023798; Ribosomal_S7_dom. DR PANTHER; PTHR11205; PTHR11205; 1. DR Pfam; PF00177; Ribosomal_S7; 1. DR PIRSF; PIRSF002122; RPS7p_RPS7a_RPS5e_RPS7o; 1. DR SUPFAM; SSF47973; SSF47973; 1. DR TIGRFAMs; TIGR01028; uS7_euk_arch; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00480, KW ECO:0000313|EMBL:ABX12251.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00480, KW ECO:0000313|EMBL:ABX12251.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00480}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00480}. FT DOMAIN 46 199 Ribosomal_S7. {ECO:0000259|Pfam:PF00177}. SQ SEQUENCE 199 AA; 22416 MW; 222F5EDC138CF0FD CRC64; MAQTKNLLLF RKWDLSDIEV KDPGLKTAIS LRKQILPYTF GRSALKRFNK ADVNIVERLI NKTMHFGKKY AKNTGRMTGK KTKVLNTVRT AFTIIELKTG KNPVEVLVRA VENSAPNEDT TRIVYGGTVY HVSVDVAPIR RVDLALRFIA DAIKESTFSN PKPIEEHMAE QLILAAENDP NAPSVKKKNE LERIAQASR // ID A9A1X6_NITMS Unreviewed; 293 AA. AC A9A1X6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX12097.1}; GN OrderedLocusNames=Nmar_0201 {ECO:0000313|EMBL:ABX12097.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12097.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12097.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12097.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12097.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1X6; -. DR STRING; 436308.Nmar_0201; -. DR EnsemblBacteria; ABX12097; ABX12097; Nmar_0201. DR KEGG; nmr:Nmar_0201; -. DR eggNOG; arCOG01363; Archaea. DR eggNOG; COG1032; LUCA. DR HOGENOM; HOG000008888; -. DR OMA; NHVSNFL; -. DR BioCyc; NMAR436308:GI3J-205-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR023970; MeThioTfrase/rSAM. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR PANTHER; PTHR11918; PTHR11918; 1. DR Pfam; PF04055; Radical_SAM; 1. DR SMART; SM00729; Elp3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 236 Elp3. {ECO:0000259|SMART:SM00729}. SQ SEQUENCE 293 AA; 33566 MW; 1CE33E10CA9D8C0E CRC64; MMLNYDAPLY RPPSEARSLI FQVTLGCSFN ECSFCDMYRS KEYSERPWDE VKSEIDMMAK YLPDTRRVFL ADGDALNLDS EYMIKIVKYI REKFSKIERI SCYAMPMNIL KKTSEELKKM NEAGLDMFYL GIESGSDIVL KKVTKGAIGK TIIKSVNKAK DAGYVMSCMV ILGLGGRKYS KEHIKGTAEV ISACSPNYVG ALTLYLENGI KQEFLDKYQG EFVRINDDES LEELQSLIEQ IDTTDEIVFR ANHGSNAYTI KGTFPQDKQE MLDKIEWMKQ HPEIMRPQGL RGF // ID A9A335_NITMS Unreviewed; 280 AA. AC A9A335; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ABX12163.1}; GN OrderedLocusNames=Nmar_0267 {ECO:0000313|EMBL:ABX12163.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12163.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12163.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12163.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12163.1; -; Genomic_DNA. DR ProteinModelPortal; A9A335; -. DR STRING; 436308.Nmar_0267; -. DR EnsemblBacteria; ABX12163; ABX12163; Nmar_0267. DR KEGG; nmr:Nmar_0267; -. DR eggNOG; arCOG02200; Archaea. DR eggNOG; COG1018; LUCA. DR HOGENOM; HOG000109663; -. DR KO; K00528; -. DR OMA; FEFVIRW; -. DR BioCyc; NMAR436308:GI3J-277-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR017927; Fd_Rdtase_FAD-bd. DR InterPro; IPR001709; Flavoprot_Pyr_Nucl_cyt_Rdtase. DR InterPro; IPR008333; OxRdtase_FAD-bd_dom. DR InterPro; IPR001433; OxRdtase_FAD/NAD-bd. DR InterPro; IPR017938; Riboflavin_synthase-like_b-brl. DR Pfam; PF00970; FAD_binding_6; 1. DR Pfam; PF00175; NAD_binding_1; 1. DR PRINTS; PR00371; FPNCR. DR SUPFAM; SSF63380; SSF63380; 1. DR PROSITE; PS51384; FAD_FR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 108 FAD-binding FR-type. FT {ECO:0000259|PROSITE:PS51384}. SQ SEQUENCE 280 AA; 31701 MW; 772BEE518C17A7A8 CRC64; MVSETKAKVI YRELLKEDLV IIRLLPEGGM PEYHTGQFLT IGVPIPAEKK IVRRAYSIAS HAENRDYFEF VIRWVRKPLP GRVTTELFYA SVGDEVWLGD PSGTALQISD TLPNGEEDKR RVICVGGGTG IAPFVAFAKH FHDVNDKREV VVLHGASYVD ELSYKRLFTD LEMESERRGR DQWNFRYRAA ISRPKEFFNR SWNGHVGRVE SFFAPDKKTG MSPVEEMVGE KITPENTIIY ICGYQGTIDG VIDSLGPQGF VTEHEKKPDG SFGIKFESYG // ID A9A4X7_NITMS Unreviewed; 182 AA. AC A9A4X7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 47. DE RecName: Full=Putative adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00039}; DE Short=AK {ECO:0000256|HAMAP-Rule:MF_00039}; DE EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00039}; DE AltName: Full=ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00039}; GN OrderedLocusNames=Nmar_1535 {ECO:0000313|EMBL:ABX13431.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13431.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13431.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13431.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Broad-specificity nucleoside monophosphate (NMP) kinase CC that catalyzes the reversible transfer of the terminal phosphate CC group between nucleoside triphosphates and monophosphates. CC {ECO:0000256|HAMAP-Rule:MF_00039}. CC -!- CATALYTIC ACTIVITY: ATP + AMP = 2 ADP. {ECO:0000256|HAMAP- CC Rule:MF_00039}. CC -!- SIMILARITY: Belongs to the adenylate kinase family. AK6 subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00039}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13431.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X7; -. DR STRING; 436308.Nmar_1535; -. DR EnsemblBacteria; ABX13431; ABX13431; Nmar_1535. DR KEGG; nmr:Nmar_1535; -. DR eggNOG; arCOG01038; Archaea. DR eggNOG; COG1936; LUCA. DR HOGENOM; HOG000224471; -. DR KO; K18532; -. DR OMA; RSLIDWC; -. DR BioCyc; NMAR436308:GI3J-1577-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004017; F:adenylate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00039; Adenylate_kinase_AK6; 1. DR InterPro; IPR020618; Adenyl_kinase_AK6. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00039}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00039}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00039}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00039}. FT REGION 30 50 NMPbind. {ECO:0000256|HAMAP- FT Rule:MF_00039}. FT REGION 102 112 LID. {ECO:0000256|HAMAP-Rule:MF_00039}. FT BINDING 103 103 ATP. {ECO:0000256|HAMAP-Rule:MF_00039}. SQ SEQUENCE 182 AA; 20594 MW; AC57A1554243B70E CRC64; MSIVITGTPG VGKHTIGKEL AQKLKLEIVD INEIAKNSGL FEENDESNDV DTEKLKVILR EKISDRHIII GHLAPYVLDN EKVNRVIVLR RNPYDLIQVY DERGYSDKKS RENASSEILG VITYDVINQF QDKVVQINVT GGKVQEVLEK VNSAISGNID TEEVDWLELV TKNNDLKKFF VD // ID A9A228_NITMS Unreviewed; 283 AA. AC A9A228; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Prephenate dehydrogenase {ECO:0000313|EMBL:ABX12441.1}; GN OrderedLocusNames=Nmar_0545 {ECO:0000313|EMBL:ABX12441.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12441.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12441.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12441.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12441.1; -; Genomic_DNA. DR ProteinModelPortal; A9A228; -. DR STRING; 436308.Nmar_0545; -. DR EnsemblBacteria; ABX12441; ABX12441; Nmar_0545. DR KEGG; nmr:Nmar_0545; -. DR eggNOG; arCOG00245; Archaea. DR eggNOG; COG0287; LUCA. DR HOGENOM; HOG000105549; -. DR KO; K04517; -. DR OMA; MSGTTFR; -. DR BioCyc; NMAR436308:GI3J-567-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004665; F:prephenate dehydrogenase (NADP+) activity; IEA:InterPro. DR GO; GO:0008977; F:prephenate dehydrogenase activity; IEA:InterPro. DR GO; GO:0006571; P:tyrosine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR003099; Prephen_DH. DR Pfam; PF02153; PDH; 1. DR SUPFAM; SSF48179; SSF48179; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS51176; PDH_ADH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 272 Prephenate/arogenate dehydrogenase. FT {ECO:0000259|PROSITE:PS51176}. SQ SEQUENCE 283 AA; 31541 MW; 647A65F22CF8AEE4 CRC64; MKKVTVIGAG GQMGQWFAKY FADKGFEVTG FDSENKIPGK GIIQAESLVG AILKADYVVL CTPTRRTPEI IRLIAKEMKR GTYLIEISSE KSKVVSALSK MPAKINPICI HPMFGPGVKT IKGQNIISVP IKDAKKELTV TKSLFEGANF VTIDAVEHDK KIAVILGLTH LMNLVFANIV SKDEKMLLTE KMSGTTFRVQ KTLAESIMTE SPELIETIIA NPEIRRVAEE LWKDIGRLLT DVQESKTEEV VNYIKDCQER LAKHTDINES YKKLTKMVKA VEK // ID A9A575_NITMS Unreviewed; 71 AA. AC A9A575; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12274.1}; GN OrderedLocusNames=Nmar_0378 {ECO:0000313|EMBL:ABX12274.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12274.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12274.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12274.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12274.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0378; -. DR EnsemblBacteria; ABX12274; ABX12274; Nmar_0378. DR KEGG; nmr:Nmar_0378; -. DR BioCyc; NMAR436308:GI3J-394-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 71 AA; 8160 MW; 24B5D4A30AAFEA93 CRC64; MKKKEENEIL EHISQKFEDD VPGIVKMLVR KKIGKFQSFD VESLPESLRT CTVEELIDIV KKGLESGKLN I // ID A9A2V9_NITMS Unreviewed; 158 AA. AC A9A2V9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Peptidylprolyl isomerase {ECO:0000313|EMBL:ABX13636.1}; DE EC=5.2.1.8 {ECO:0000313|EMBL:ABX13636.1}; GN OrderedLocusNames=Nmar_1740 {ECO:0000313|EMBL:ABX13636.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13636.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13636.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13636.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13636.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2V9; -. DR STRING; 436308.Nmar_1740; -. DR EnsemblBacteria; ABX13636; ABX13636; Nmar_1740. DR KEGG; nmr:Nmar_1740; -. DR eggNOG; arCOG04767; Archaea. DR eggNOG; COG0652; LUCA. DR HOGENOM; HOG000065978; -. DR KO; K03768; -. DR OMA; GRMDRPV; -. DR BioCyc; NMAR436308:GI3J-1787-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-EC. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 2.40.100.10; -; 1. DR InterPro; IPR029000; Cyclophilin-like_dom. DR InterPro; IPR024936; Cyclophilin-type_PPIase. DR InterPro; IPR020892; Cyclophilin-type_PPIase_CS. DR InterPro; IPR002130; Cyclophilin-type_PPIase_dom. DR PANTHER; PTHR11071; PTHR11071; 1. DR Pfam; PF00160; Pro_isomerase; 1. DR PIRSF; PIRSF001467; Peptidylpro_ismrse; 1. DR PRINTS; PR00153; CSAPPISMRASE. DR SUPFAM; SSF50891; SSF50891; 1. DR PROSITE; PS00170; CSA_PPIASE_1; 1. DR PROSITE; PS50072; CSA_PPIASE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX13636.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 157 PPIase cyclophilin-type. FT {ECO:0000259|PROSITE:PS50072}. SQ SEQUENCE 158 AA; 17421 MW; D318BE3BE9A1D031 CRC64; MTTANIETNF GKISFKLLPD LAPETVRNFE KLAKDGFYDG TLFHRVIPGF MIQGGDPNTK TDNKSSWGTG GPGYNVKAEF NSRSHLRGIV SMARAQDPDS AGSQFFIVTA DSTFLDRQYT VFGEVTEGMD VADKIVNLER DGNDCPLEKA QMTRVTVE // ID A9A3S4_NITMS Unreviewed; 427 AA. AC A9A3S4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX13336.1}; GN OrderedLocusNames=Nmar_1440 {ECO:0000313|EMBL:ABX13336.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13336.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13336.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13336.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13336.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3S4; -. DR STRING; 436308.Nmar_1440; -. DR EnsemblBacteria; ABX13336; ABX13336; Nmar_1440. DR KEGG; nmr:Nmar_1440; -. DR eggNOG; arCOG02358; Archaea. DR eggNOG; COG0642; LUCA. DR OMA; RHESITK; -. DR BioCyc; NMAR436308:GI3J-1475-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR029151; Sensor-like. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF103190; SSF103190; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13336.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13336.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 183 207 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 228 426 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 427 AA; 47502 MW; 5D5ABDC1B9B2D969 CRC64; MNITKKIVVG GAIIVILAII TSGIFSILVS EEISNMTIHE AERANAAYIK SIASQELTMN DFEAINFDER KTTFENYFQS VENDNTLRIK VWSKDGTIVY SDDSSIVGEN FADNIRFQNS INGQLVSEIK DPVDPENIAE TGYGQLMEIY VPIYLNQSEP VGVIELYFSM DSINQAINKA SSLVYTIILI LIGLLSLAIL VFSIIVAKSS KQNIEQEKFA VLGELTARLS HDLRNPLSII AAGVSLISKQ TQEEKTAQTC EKIDHSVKRM THQIDDVMTF VKKREKNIRK TTLNELLDSS LEELIIPENI SIERPSENPS ITCDKDQIVL VFNNILLNAI QKLGSGGKIT ILYSENNNDH DITIQDSGEP IPETNLKKIF DPLFTTKQQG TGLGLYSCKT IIESHNGSIT ANNNPTRITI SLPKEDK // ID A9A1U6_NITMS Unreviewed; 305 AA. AC A9A1U6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Oxidoreductase domain protein {ECO:0000313|EMBL:ABX12067.1}; GN OrderedLocusNames=Nmar_0171 {ECO:0000313|EMBL:ABX12067.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12067.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12067.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12067.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12067.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U6; -. DR STRING; 436308.Nmar_0171; -. DR EnsemblBacteria; ABX12067; ABX12067; Nmar_0171. DR KEGG; nmr:Nmar_0171; -. DR eggNOG; arCOG01622; Archaea. DR eggNOG; COG0673; LUCA. DR OMA; CHRIINE; -. DR BioCyc; NMAR436308:GI3J-172-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR000683; Oxidoreductase_N. DR Pfam; PF01408; GFO_IDH_MocA; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 107 GFO_IDH_MocA. {ECO:0000259|Pfam:PF01408}. SQ SEQUENCE 305 AA; 35232 MW; 8D3E72D860ACE43E CRC64; MEFHIQALRK SGLNPIAIAS SNPNSLTYEK FAKKNKISKT FQNWKDMVKN ENYDGILIAT KIECTFEILN FCLKKNVPIL VEKPVGFNSI KLKKIIQKSH GMVMVGYNRR FYKPINYLKN LLLKNCNPVI ANMVVPEIPG EKNFYSNSTH SIDILRYIFG EIKLEFVKKL IKNNKILGFV ATFSNQNQDL INFIGNWNSS DNFSLSLYQN TKKFELKPFE QLNIFDGIKI IEPTKTNPIR QYVPKLQKTI TLDKMDVLLK PGFYLQAKAF AKLIKTRQKN DYSATLSDAM KNLELCEKLI GKLRI // ID A9A375_NITMS Unreviewed; 1006 AA. AC A9A375; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:ABX12504.1}; GN OrderedLocusNames=Nmar_0608 {ECO:0000313|EMBL:ABX12504.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12504.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12504.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12504.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12504.1; -; Genomic_DNA. DR ProteinModelPortal; A9A375; -. DR STRING; 436308.Nmar_0608; -. DR REBASE; 16738; NmaSCMORF606P. DR EnsemblBacteria; ABX12504; ABX12504; Nmar_0608. DR KEGG; nmr:Nmar_0608; -. DR eggNOG; arCOG00878; Archaea. DR eggNOG; COG0610; LUCA. DR HOGENOM; HOG000240457; -. DR KO; K01153; -. DR OMA; ARIRWVC; -. DR BioCyc; NMAR436308:GI3J-632-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009035; F:Type I site-specific deoxyribonuclease activity; IEA:InterPro. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR007409; Restrct_endonuc_type1_HsdR_N. DR InterPro; IPR004473; Restrct_endonuc_typeI_HsdR. DR Pfam; PF04313; HSDR_N; 1. DR Pfam; PF04851; ResIII; 1. DR SMART; SM00487; DEXDc; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR TIGRFAMs; TIGR00348; hsdR; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 314 472 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 547 718 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. SQ SEQUENCE 1006 AA; 117126 MW; 00F5921AB8CB9BE7 CRC64; MNFRIEDNEE GRQVELPALE LITALGYTYI PNYELNIPKE RPDHRQVLLY PRLRAAIKRL NDFDDDGIEQ AIAQIHEDNF PIGMPMIDAN EKIRIKLTGR AGENAIAQPI TIKQYGKKGI EYPTVKFFDF DPKKIGTKED KNEYLVTNQF KHLGNRTEIE CDIVIFVNGI PLVLIECKKP TTIDLMKTVW KENLEKYQRD GSHSLGHEKL FFFNHVIMAT SAIQARYGTL KALPNKYAKW TSLTNITTKE LEKLVGRKPT PQDIMLAGMI KKETLLDMLK NFVLYEIEEH KKIKKVAKHQ QYRVVTKSVD RISHHKKVED KGGVIWHTQG SGKSLSMVWF ATQLYYKFSR PTIMVITDRR QLNKQIFDTF RNCGFPEPEK PRNRSQLAKT LQYSKGKTIM VNLQKFDKPE KFVETKEKIY VLVDEAHRSQ YKWTAGYMRK AMPNAVFFAF TGTPLDRENK NTYRRFGPLI DKYSFTESKE DGATVKVEHM GLLPEIEIEG GNSLNNIFDN LFGHLPKAQQ AEIRRKYATK KKIASSPARI RKICEKIVDH YTKKILPNGY KAMIVAPTRA AAVTYKRELE DLTKLPARII MDSKKDEVGP DEFSWADYYL PQNEALKKAE EFTNPDDPTK FLIVVDMLLV GYDAPIVQVM YLDRPLREHA LLQAIARVNR IYDEHKDRGF IIDFWGVTRD LQNALKMFEE QDVQGALDNV DDDLLELDVR HKDFMEKIQG IDSKDHNEIA KRFEDEDEQE EFEYAFKRFA KALEAVLPDK EAVPYEKDLK KGYEIRGKIR AWFYGDRADL SEYGKKVQKI IDKHIRAIGI SEISGSKEIT YDNFLGFIAK FKGDNRAKAA LIKKRATLVI REMSPDNPAF YQKLKERLEK LIQDEKERRV DDAQYFEGIR DIFEEALSGP EKLQKQTGIK DRFQLAIYML LEEKHSDLKQ NKKYSEEIFK KVKKAASVKD WRDKEPQENE IELAVIDTLD KKIFDEKTRD KLASEVYKMA VNNNEW // ID A9A1H3_NITMS Unreviewed; 171 AA. AC A9A1H3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13152.1}; GN OrderedLocusNames=Nmar_1256 {ECO:0000313|EMBL:ABX13152.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13152.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13152.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13152.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13152.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1256; -. DR EnsemblBacteria; ABX13152; ABX13152; Nmar_1256. DR KEGG; nmr:Nmar_1256; -. DR eggNOG; ENOG4102U9E; Archaea. DR eggNOG; ENOG4110ZKE; LUCA. DR BioCyc; NMAR436308:GI3J-1289-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 171 AA; 19374 MW; DBE4B7D1403E7A14 CRC64; MNKYSVITAI AIIVIVTPFV FSTMNIVGSQ QLEYRWHSPG TFSFFTMSNH GEMEFCNTLP FWMTFEKFEV SMFYTGTNVG SYEVKPLTLN PSASGVQEGV FSSENISNAQ HTFMNFDFEF DSGDIRLDPN QFIVVVQTHT PILGIIPYSS TTQISAFNFD QMMNVEDLTC D // ID A9A2I8_NITMS Unreviewed; 269 AA. AC A9A2I8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=ParB-like partition protein {ECO:0000313|EMBL:ABX13227.1}; GN OrderedLocusNames=Nmar_1331 {ECO:0000313|EMBL:ABX13227.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13227.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13227.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13227.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13227.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2I8; -. DR STRING; 436308.Nmar_1331; -. DR EnsemblBacteria; ABX13227; ABX13227; Nmar_1331. DR KEGG; nmr:Nmar_1331; -. DR eggNOG; arCOG01875; Archaea. DR eggNOG; COG1475; LUCA. DR HOGENOM; HOG000108113; -. DR KO; K03497; -. DR OMA; KEIADSC; -. DR BioCyc; NMAR436308:GI3J-1365-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR InterPro; IPR004437; ParB/RepB/Spo0J. DR InterPro; IPR003115; ParB/Sulfiredoxin_dom. DR Pfam; PF02195; ParBc; 1. DR SMART; SM00470; ParB; 1. DR SUPFAM; SSF110849; SSF110849; 1. DR TIGRFAMs; TIGR00180; parB_part; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 107 ParB. {ECO:0000259|SMART:SM00470}. SQ SEQUENCE 269 AA; 30715 MW; A677F581D4F3D55E CRC64; MRKYKPTISY RLKEIPIKQI KVWKEAQARK LDRENISELA KSIKNEGLLN PPLVQKEGKN TFLLMSGQRR LAAMKRLGAK KIPVHVLTKQ TSYNLENAKA ASVVENIHRN DMNHKEIADS CKFLTEQMGK SAAARSMGMS LPTLNKYLGF SGVPNRLKLL VPKVLSRDEM TKVYRIIPNI TKAEKIAQRI SKLDSGLKKK YIQALSQSPK SSHQKLLKRA KSMRIKRNLS FKISKTNAKR LATVSNKKDM SPDEFAGKII SDYLKRKRR // ID A9A2U5_NITMS Unreviewed; 92 AA. AC A9A2U5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13622.1}; GN OrderedLocusNames=Nmar_1726 {ECO:0000313|EMBL:ABX13622.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13622.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13622.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13622.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13622.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1726; -. DR EnsemblBacteria; ABX13622; ABX13622; Nmar_1726. DR KEGG; nmr:Nmar_1726; -. DR eggNOG; arCOG02263; Archaea. DR eggNOG; COG2450; LUCA. DR HOGENOM; HOG000109236; -. DR KO; K09152; -. DR OMA; KIWKPEY; -. DR BioCyc; NMAR436308:GI3J-1771-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000917; P:barrier septum assembly; IEA:InterPro. DR InterPro; IPR007561; Cell_div_SepF/SepF-rel. DR Pfam; PF04472; DUF552; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 92 AA; 10545 MW; DB466F9393B019A0 CRC64; MQKQENTTFL KAITIRDISD VHSIKEDIKK DMILILRVTP LAQKDVDQLR KVVEELYSIA KTAGADIARL GEERIIVAPA NIKIWKPEYD LK // ID A9A4N6_NITMS Unreviewed; 187 AA. AC A9A4N6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 42. DE SubName: Full=5-formyltetrahydrofolate cyclo-ligase {ECO:0000313|EMBL:ABX13014.1}; GN OrderedLocusNames=Nmar_1118 {ECO:0000313|EMBL:ABX13014.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13014.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13014.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13014.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13014.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4N6; -. DR STRING; 436308.Nmar_1118; -. DR EnsemblBacteria; ABX13014; ABX13014; Nmar_1118. DR KEGG; nmr:Nmar_1118; -. DR eggNOG; arCOG00474; Archaea. DR eggNOG; COG0212; LUCA. DR HOGENOM; HOG000007299; -. DR KO; K01934; -. DR OMA; YLDILVY; -. DR BioCyc; NMAR436308:GI3J-1149-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.10420; -; 1. DR InterPro; IPR002698; FTHF_cligase. DR InterPro; IPR024185; FTHF_cligase-like. DR PANTHER; PTHR23407:SF1; PTHR23407:SF1; 1. DR Pfam; PF01812; 5-FTHF_cyc-lig; 1. DR PIRSF; PIRSF006806; FTHF_cligase; 1. DR TIGRFAMs; TIGR02727; MTHFS_bact; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX13014.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 187 AA; 21302 MW; 99DD32830B4D9CAE CRC64; MENNSEKKSL RNLLLEKRDG TSFDLMKIAS EKISKKLKKI KTFRDAQKIG AYYPIGSEVP TQDIIQELLS DGKEVFLPRV SGENMDFKKI SDFSSLESGS FEIMEPKIDC ETENNLDVIL VPTVGITPKG IRLGYGHGFY DRFLSNHKIS TISLTLEKQV VKNIPKSDHD ILIDWVVTED RIIDTHR // ID A9A2T0_NITMS Unreviewed; 113 AA. AC A9A2T0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13607.1}; GN OrderedLocusNames=Nmar_1711 {ECO:0000313|EMBL:ABX13607.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13607.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13607.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13607.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13607.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1711; -. DR EnsemblBacteria; ABX13607; ABX13607; Nmar_1711. DR KEGG; nmr:Nmar_1711; -. DR eggNOG; ENOG4102U9V; Archaea. DR eggNOG; ENOG4110ZJX; LUCA. DR BioCyc; NMAR436308:GI3J-1756-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 35 112 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 113 AA; 12942 MW; F1532140928FC044 CRC64; MRLSIVVIIA ALVVGGIVTI SGFLTNQEIN DIPELSEISN QYVKLEKYKN ELEKINQYNQ QVLTDLENQI KNSDNEQLEQ INEEIEVVKR VINDNKAELE QVIQRLSAME SEP // ID A9A4R6_NITMS Unreviewed; 290 AA. AC A9A4R6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13370.1}; GN OrderedLocusNames=Nmar_1474 {ECO:0000313|EMBL:ABX13370.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13370.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13370.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13370.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13370.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1474; -. DR EnsemblBacteria; ABX13370; ABX13370; Nmar_1474. DR KEGG; nmr:Nmar_1474; -. DR eggNOG; COG1672; LUCA. DR OMA; VSCLFEL; -. DR BioCyc; NMAR436308:GI3J-1511-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 290 AA; 34211 MW; F2DEF7AEEAEBFF11 CRC64; MALFFNDPKF HTIYEKIMDL NELVWENKLD PFMIEQWLEN FDTKSDKLEM LELLSKFTYY NEKEISSLLT SSFELLKSYL SLIHLNQKIE ISDLNEFVKN NCYFVGTWEN PSKSGVHLLY DFRVLNKLPP RIFCNTVKDV PKNAPFVIFL DDIAGSGRQA SDFWNLRVIK ERKHLTNTKF LYLVLVGNEK GIEYIETKTK IKVLPVVKLD DRYKLFSKSS IYFPDKKKRQ KVQKICEKYG KRLYANNPLG FANSQMLIGF HHNIPDNTLP IIWENKNNWD PIFPRFGAVV // ID A9A594_NITMS Unreviewed; 304 AA. AC A9A594; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 66. DE RecName: Full=Ornithine carbamoyltransferase, catabolic {ECO:0000256|HAMAP-Rule:MF_01109}; DE Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109}; DE EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109}; GN Name=arcB {ECO:0000256|HAMAP-Rule:MF_01109}; GN OrderedLocusNames=Nmar_0397 {ECO:0000313|EMBL:ABX12293.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12293.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12293.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12293.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: Carbamoyl phosphate + L-ornithine = phosphate CC + L-citrulline. {ECO:0000256|HAMAP-Rule:MF_01109}. CC -!- PATHWAY: Amino-acid degradation; L-arginine degradation via ADI CC pathway; carbamoyl phosphate from L-arginine: step 2/2. CC {ECO:0000256|HAMAP-Rule:MF_01109}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01109}. CC -!- SIMILARITY: Belongs to the ATCase/OTCase family. CC {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|RuleBase:RU003634}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12293.1; -; Genomic_DNA. DR ProteinModelPortal; A9A594; -. DR SMR; A9A594; 1-303. DR STRING; 436308.Nmar_0397; -. DR EnsemblBacteria; ABX12293; ABX12293; Nmar_0397. DR KEGG; nmr:Nmar_0397; -. DR eggNOG; arCOG00912; Archaea. DR eggNOG; COG0078; LUCA. DR HOGENOM; HOG000022686; -. DR KO; K00611; -. DR OMA; GNNMAHS; -. DR BioCyc; NMAR436308:GI3J-414-MONOMER; -. DR UniPathway; UPA00254; UER00365. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004585; F:ornithine carbamoyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019547; P:arginine catabolic process to ornithine; IEA:UniProtKB-UniPathway. DR GO; GO:0019546; P:arginine deiminase pathway; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.1370; -; 2. DR HAMAP; MF_01109; OTCase; 1. DR InterPro; IPR006132; Asp/Orn_carbamoyltranf_P-bd. DR InterPro; IPR006130; Asp/Orn_carbamoylTrfase. DR InterPro; IPR006131; Asp_carbamoyltransf_Asp/Orn-bd. DR InterPro; IPR002292; Orn/put_carbamltrans. DR InterPro; IPR024904; OTCase_ArgI. DR Pfam; PF00185; OTCace; 1. DR Pfam; PF02729; OTCace_N; 1. DR PRINTS; PR00100; AOTCASE. DR PRINTS; PR00102; OTCASE. DR SUPFAM; SSF53671; SSF53671; 1. DR TIGRFAMs; TIGR00658; orni_carb_tr; 1. DR PROSITE; PS00097; CARBAMOYLTRANSFERASE; 1. PE 3: Inferred from homology; KW Arginine metabolism {ECO:0000256|HAMAP-Rule:MF_01109}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01109}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_01109, KW ECO:0000256|RuleBase:RU003634, ECO:0000313|EMBL:ABX12293.1}. FT DOMAIN 6 146 OTCace_N. {ECO:0000259|Pfam:PF02729}. FT DOMAIN 152 300 OTCace. {ECO:0000259|Pfam:PF00185}. FT REGION 55 59 Carbamoyl phosphate binding. FT {ECO:0000256|HAMAP-Rule:MF_01109}. FT REGION 261 264 Ornithine binding. {ECO:0000256|HAMAP- FT Rule:MF_01109}. FT BINDING 106 106 Carbamoyl phosphate. {ECO:0000256|HAMAP- FT Rule:MF_01109}. FT BINDING 133 133 Carbamoyl phosphate. {ECO:0000256|HAMAP- FT Rule:MF_01109}. FT SITE 30 30 Important for structural integrity. FT {ECO:0000256|HAMAP-Rule:MF_01109}. FT SITE 146 146 Important for structural integrity. FT {ECO:0000256|HAMAP-Rule:MF_01109}. SQ SEQUENCE 304 AA; 33768 MW; E52E13BF74D93AA6 CRC64; MKLKTKNLLT LAELSPKEFV GLIDDALKLK KELKKGGNKP ILKNKTLTMI FQKPSTRTRV SFEIGMSQLG GYAVNLSSND MQLSRGESVE DTAKTLSRYT DCIMARVYDH KLLEQLSENA TVPIINGLSD TFHPCQILAD FMTIKEKKKK IKGIKIAWIG DGNNVCNSMI YGTALAGATM SIATPKGFEP DKKTVKEAQK STIIELTTDP LKAVKNADVI VTDTYSSIHN NDPKRIKKFL PKYQVNPKLM KSAKKDAIFM HCLPAKRDQE VTSSVIDGPQ SVVWDEAENR LHSQKALLAS LIRA // ID A9A1Q8_NITMS Unreviewed; 50 AA. AC A9A1Q8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12029.1}; GN OrderedLocusNames=Nmar_0129 {ECO:0000313|EMBL:ABX12029.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12029.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12029.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12029.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12029.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0129; -. DR EnsemblBacteria; ABX12029; ABX12029; Nmar_0129. DR KEGG; nmr:Nmar_0129; -. DR BioCyc; NMAR436308:GI3J-132-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 48 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 50 AA; 5775 MW; ECFA7FB95C1843C6 CRC64; MSRLSVIKEI FQLYVKKRKF YMFPIIVLLI VLIGITSLAQ SGLVAFIYPI // ID A9A468_NITMS Unreviewed; 109 AA. AC A9A468; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12252.1}; GN OrderedLocusNames=Nmar_0356 {ECO:0000313|EMBL:ABX12252.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12252.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12252.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12252.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12252.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0356; -. DR EnsemblBacteria; ABX12252; ABX12252; Nmar_0356. DR KEGG; nmr:Nmar_0356; -. DR eggNOG; arCOG10523; Archaea. DR eggNOG; ENOG41111RG; LUCA. DR OMA; DAFCKES; -. DR BioCyc; NMAR436308:GI3J-372-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 109 AA; 12854 MW; 148159A6A5E54B52 CRC64; MLLMLSEKGK YASATENRRF VWSEIIWPLI LELNDVVFTL KQFQDRRDKI CQQHNLSINV PSRGLASLQQ KGIILKEGTI YSIHYKLIPY MRLRARCDYA TAIREVRLK // ID A9A5T5_NITMS Unreviewed; 175 AA. AC A9A5T5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13090.1}; GN OrderedLocusNames=Nmar_1194 {ECO:0000313|EMBL:ABX13090.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13090.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13090.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13090.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13090.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13090; ABX13090; Nmar_1194. DR KEGG; nmr:Nmar_1194; -. DR eggNOG; arCOG08693; Archaea. DR eggNOG; ENOG410Y48Y; LUCA. DR BioCyc; NMAR436308:GI3J-1227-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 175 AA; 20120 MW; 92E83138E336D574 CRC64; MEKKKSQFFK IPLLSIQILQ YEFLGPIPLD EWGPPMEKLV FLIMSRDKDR FNIVYAGDCE KTDDKSFFVQ HPGFKCWVEK SGSEKSLYLA ILPLFDASKE HRESVLNKIK VRYNPSCNVG EIVEPKPDYV VRKSPEPEKF SCPCCGSEMK AEQFLEKSTL YRCSSCGISD TKLNS // ID A9A5S9_NITMS Unreviewed; 265 AA. AC A9A5S9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13084.1}; GN OrderedLocusNames=Nmar_1188 {ECO:0000313|EMBL:ABX13084.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13084.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13084.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13084.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13084.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1188; -. DR EnsemblBacteria; ABX13084; ABX13084; Nmar_1188. DR KEGG; nmr:Nmar_1188; -. DR eggNOG; arCOG07264; Archaea. DR eggNOG; ENOG410YYHS; LUCA. DR OMA; TNSCVLE; -. DR BioCyc; NMAR436308:GI3J-1221-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR009030; Growth_fac_rcpt_. DR SUPFAM; SSF57184; SSF57184; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 126 146 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 49 76 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 265 AA; 28929 MW; 6B90D9AF0173A9BC CRC64; MEDRDVVDDV NALLNLGVGD AYRLEHIKQA YIQNKSIWNA DKNYLQKMVD KYLIKHSNLE SDSAEIEDES ENEEQIHCWK CGKKTTLGAN FCMVCGASLF DVASKPKVEQ EPTSPNKKNN NRTINLKIPI MIGIPVIILA IIGGAYSQGY FDNTFERTEL KDEQVNVKPT IVEATEKTSS ETDSPCGPGT VLDSKTNSCV LESEATEKTS SETDSPCGPG TVLDSKTNSC VLESEATEKT SSETDSPCGP GTVLDSKTNS CVLDK // ID A9A149_NITMS Unreviewed; 137 AA. AC A9A149; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12010.1}; GN OrderedLocusNames=Nmar_0110 {ECO:0000313|EMBL:ABX12010.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12010.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12010.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12010.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12010.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0110; -. DR EnsemblBacteria; ABX12010; ABX12010; Nmar_0110. DR KEGG; nmr:Nmar_0110; -. DR eggNOG; arCOG08723; Archaea. DR eggNOG; ENOG411114B; LUCA. DR HOGENOM; HOG000107758; -. DR OMA; MVAIDTP; -. DR BioCyc; NMAR436308:GI3J-113-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 137 AA; 15258 MW; 75FA734DB3BE7BEC CRC64; MVAIDTPASV ESFRRFIISS TCKSYAPRSY LDDSEVFAER EDSLGAIYVE AADKVTLKKI RDITFVNARD ILGIIYNSKS GNTSLKWRQL KKNHGKVTGE ASANSLTNLA ESGVLTLDWV ESYLKKKSEE TTNEVTN // ID A9A2B6_NITMS Unreviewed; 91 AA. AC A9A2B6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12827.1}; GN OrderedLocusNames=Nmar_0931 {ECO:0000313|EMBL:ABX12827.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12827.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12827.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12827.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12827.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2B6; -. DR STRING; 436308.Nmar_0931; -. DR EnsemblBacteria; ABX12827; ABX12827; Nmar_0931. DR KEGG; nmr:Nmar_0931; -. DR eggNOG; arCOG04488; Archaea. DR eggNOG; COG2164; LUCA. DR OMA; RIHRYAD; -. DR BioCyc; NMAR436308:GI3J-959-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR029000; Cyclophilin-like_dom. DR InterPro; IPR025658; Cyclophilin_TM1367. DR Pfam; PF04126; Cyclophil_like; 1. DR SUPFAM; SSF50891; SSF50891; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 84 Cyclophil_like. FT {ECO:0000259|Pfam:PF04126}. SQ SEQUENCE 91 AA; 9862 MW; 55518BFDFCC38B17 CRC64; MRSLPLEGHA HLLGKSIVYF ETSVDSGIER ARSEFKKGDV AFLPSSGSFC FFTNDVASAK TMTPIGKLSD NIDALKDVKS GDVLCIYEET A // ID A9A3N6_NITMS Unreviewed; 94 AA. AC A9A3N6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13298.1}; GN OrderedLocusNames=Nmar_1402 {ECO:0000313|EMBL:ABX13298.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13298.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13298.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13298.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13298.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1402; -. DR EnsemblBacteria; ABX13298; ABX13298; Nmar_1402. DR KEGG; nmr:Nmar_1402; -. DR eggNOG; arCOG08704; Archaea. DR eggNOG; ENOG41110SK; LUCA. DR HOGENOM; HOG000107086; -. DR OMA; IHGSQMA; -. DR BioCyc; NMAR436308:GI3J-1437-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 94 AA; 10544 MW; ADD06D198DEE9875 CRC64; MEIKVHINDI HGSQMAAKIN GKFNVDEHEF HFTAIAFGRI GGQNVGAKLS KVTEKELEKL GYDVDEVIME LQRNLLQGDM SLPEGLKKES FVDD // ID A9A3Z6_NITMS Unreviewed; 517 AA. AC A9A3Z6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:ABX12180.1}; DE EC=1.6.99.5 {ECO:0000313|EMBL:ABX12180.1}; GN OrderedLocusNames=Nmar_0284 {ECO:0000313|EMBL:ABX12180.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12180.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12180.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12180.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12180.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0284; -. DR EnsemblBacteria; ABX12180; ABX12180; Nmar_0284. DR KEGG; nmr:Nmar_0284; -. DR eggNOG; arCOG01537; Archaea. DR eggNOG; COG0651; LUCA. DR HOGENOM; HOG000109730; -. DR KO; K00342; -. DR OMA; MHYISHL; -. DR BioCyc; NMAR436308:GI3J-294-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR GO; GO:0042773; P:ATP synthesis coupled electron transport; IEA:InterPro. DR InterPro; IPR010227; NADH_Q_OxRdtase_chainM/4. DR InterPro; IPR003918; NADH_UbQ_OxRdtase. DR InterPro; IPR001750; ND/Mrp_mem. DR Pfam; PF00361; Proton_antipo_M; 1. DR PRINTS; PR01437; NUOXDRDTASE4. DR TIGRFAMs; TIGR01972; NDH_I_M; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12180.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 23 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 30 51 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 71 93 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 138 156 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 180 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 192 212 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 232 255 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 267 288 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 300 319 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 326 351 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 357 376 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 397 417 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 437 458 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 479 499 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 156 430 Proton_antipo_M. FT {ECO:0000259|Pfam:PF00361}. SQ SEQUENCE 517 AA; 56474 MW; 22D4CF6DCCB2CDB1 CRC64; MEYALLQAVF LPLLLSPIAY ILGRKVGPTP AMWFTFAILL YTTILVVNAA LSGTVEEHYP WTEQFGEFGF LLDGLASPFA IIIYVLSTIL VLYSKPYMIH KFHEQFEEEQ KINPSSSGQS SVVESSALSN YVNAKSGLYF ALYLVFAMGM LGTVMSTNLI EFYIFFEVML IPGFFLVALW GDGPRRKIGL MFLFWTHAGA VVLLLGFLMI GLTIGSFDFA DIKESEIPQD VVMISAIAIA IGLGVKLAVF MFHVWLPYVH GSAPTPISAL LSPAMIGIGA YGVFRLIVEF LPSTFAELSI WFHIWGLVTM LYGGAMALMQ DDLKRLLAYS SISQMGYLLF GIGSMSAMGL AGAEMMYITH GLGKGILFMM AGIIIVKVGT RSISKLGGLA GKMPITAVCA VIGALTIMGV PPTSGFMGEW ILFYGALETA IEEGSTLRAV TFGLGLVATA LTMAYMLWML KRVFFGKTPE HLEKVKEGSW YMTAPMMVLA GFTVVLGIYP DIFLKTILPY MNGVLGI // ID A9A2S3_NITMS Unreviewed; 116 AA. AC A9A2S3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13600.1}; GN OrderedLocusNames=Nmar_1704 {ECO:0000313|EMBL:ABX13600.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13600.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13600.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13600.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13600.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1704; -. DR EnsemblBacteria; ABX13600; ABX13600; Nmar_1704. DR KEGG; nmr:Nmar_1704; -. DR eggNOG; arCOG08775; Archaea. DR eggNOG; ENOG4111077; LUCA. DR HOGENOM; HOG000109324; -. DR OMA; MQYFQAV; -. DR BioCyc; NMAR436308:GI3J-1749-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 116 AA; 13028 MW; E81064766DEC114E CRC64; MQYFQAVQQG KQRAGKSQMK MFEAAGFGML TLTTKKVDGK FQPVGEEDFT AVVNSEEGYV TIIVDSDGYT KAQSKALEKE EALSIYKKLR DSGVEEYPGK EIMIWTETRP TVQNES // ID A9A185_NITMS Unreviewed; 333 AA. AC A9A185; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 63. DE SubName: Full=Daunorubicin resistance ABC transporter ATPase subunit {ECO:0000313|EMBL:ABX12371.1}; GN OrderedLocusNames=Nmar_0475 {ECO:0000313|EMBL:ABX12371.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12371.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12371.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12371.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12371.1; -; Genomic_DNA. DR ProteinModelPortal; A9A185; -. DR STRING; 436308.Nmar_0475; -. DR EnsemblBacteria; ABX12371; ABX12371; Nmar_0475. DR KEGG; nmr:Nmar_0475; -. DR eggNOG; arCOG00194; Archaea. DR eggNOG; COG1131; LUCA. DR KO; K01990; -. DR OMA; CHRVGIM; -. DR BioCyc; NMAR436308:GI3J-495-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR GO; GO:0043215; P:daunorubicin transport; IEA:InterPro. DR GO; GO:1900753; P:doxorubicin transport; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR005894; DrrA. DR InterPro; IPR025302; DUF4162. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR Pfam; PF13732; DUF4162; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR01188; drrA; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 236 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 333 AA; 37339 MW; 91A9F910AD301B64 CRC64; MLYSIETKSL TKSFGDVTAV DDVSFTVESG EIFGFLGPNG AGKSTTMMIL TTLLKPTSGQ ALISGYDVMA NPKNVRQNIG YVQQETTVDE YLTGRENLIL QAKLNHIPKN EIDSRIDEVL DLIELSDKQN ESVVTYSGGM RKRLDIAGGL LHRPKVLFLD EPTVGLDIQT RRKIWEYIKR IHDEFEMTIF LSTHYMEEAD QLCDRIGIID GGKIQVIDSP KNMKNAMGNE VISIVIEESD SGDSFLSELH KIESVNKINE DDSKLTLFVS NGTEVIPKVF QISSNIGIKI TSISLTQPTL DDVFISYTGH EIRDDDGTFN RKREHAKMKR LRA // ID A9A5X7_NITMS Unreviewed; 325 AA. AC A9A5X7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=ATP phosphoribosyltransferase {ECO:0000313|EMBL:ABX13455.1}; DE EC=2.4.2.17 {ECO:0000313|EMBL:ABX13455.1}; GN OrderedLocusNames=Nmar_1559 {ECO:0000313|EMBL:ABX13455.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13455.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13455.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13455.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13455.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5X7; -. DR STRING; 436308.Nmar_1559; -. DR EnsemblBacteria; ABX13455; ABX13455; Nmar_1559. DR KEGG; nmr:Nmar_1559; -. DR eggNOG; arCOG02208; Archaea. DR eggNOG; COG0040; LUCA. DR HOGENOM; HOG000223250; -. DR KO; K00765; -. DR OMA; KVPDLMD; -. DR BioCyc; NMAR436308:GI3J-1602-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0003879; F:ATP phosphoribosyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0000105; P:histidine biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.70.120; -; 1. DR InterPro; IPR013820; ATP_PRibTrfase_cat. DR InterPro; IPR001348; ATP_PRibTrfase_HisG. DR InterPro; IPR013115; HisG_C. DR InterPro; IPR011322; N-reg_PII-like_a/b. DR InterPro; IPR015867; N-reg_PII/ATP_PRibTrfase_C. DR PANTHER; PTHR21403; PTHR21403; 2. DR Pfam; PF01634; HisG; 1. DR Pfam; PF08029; HisG_C; 1. DR SUPFAM; SSF54913; SSF54913; 1. DR TIGRFAMs; TIGR00070; hisG; 1. DR TIGRFAMs; TIGR03455; HisG_C-term; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosyltransferase {ECO:0000313|EMBL:ABX13455.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13455.1}. FT DOMAIN 50 236 HisG. {ECO:0000259|Pfam:PF01634}. FT DOMAIN 242 307 HisG_C. {ECO:0000259|Pfam:PF08029}. SQ SEQUENCE 325 AA; 37315 MW; 9073586F29AECF2A CRC64; MSEIRFAIPK GSLEDATFKL LERSWTKVNR KSRTYRVYLD DPKIIVKMLR PQEIPTLVNE GLYDVGITGK DWVGETKSDV EPILDLEYGK IRLVIAFPDN YRYKNLDAMI ADYAKKKKTL RLSSEYLTTA SRFIKSCKSY KKYFGNKDPQ IVTPWLRIGT NKSVQIHLSF GATEAKPPED VDAIMDVTET GTTLKQNKLK IVDEVLTSTA HLIVNKKSLK DKAKREKIFD IVTLMRGAVH GKKYLHIYLN VEEKNLPKLL KQIPSLKKPT ISPLSEAGWH GVNTIIKKSD FHKIIPKLRK IAQGLVVHEP RQILELEEIK RDEEN // ID A9A291_NITMS Unreviewed; 223 AA. AC A9A291; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12802.1}; GN OrderedLocusNames=Nmar_0906 {ECO:0000313|EMBL:ABX12802.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12802.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12802.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12802.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12802.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0906; -. DR EnsemblBacteria; ABX12802; ABX12802; Nmar_0906. DR KEGG; nmr:Nmar_0906; -. DR eggNOG; arCOG00786; Archaea. DR eggNOG; COG1468; LUCA. DR KO; K19465; -. DR OMA; KENEPAH; -. DR BioCyc; NMAR436308:GI3J-934-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 223 AA; 26261 MW; D3F3E1310521241A CRC64; MPNFAQMLKI REPTLLDRDD GHWYQTKFDK IYPSINTILS ATAPEEKKNG LASWKENEPA HQYITAQSQH IGTQSHQIIE DYLSRNLNLD DFDLLPIAHF HNLKPYLENI SDVTCIEQRM YSDKLKVAGT SDLIAKYNGE LSIIDYKTKR KPQVDEYMYE YYLQTTCYAQ MFQEVTGQKI NQVVILVSSE KNTRQEFVKT CDDYVEPLYE RLEQYYLNNE VML // ID A9A3S1_NITMS Unreviewed; 311 AA. AC A9A3S1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13333.1}; GN OrderedLocusNames=Nmar_1437 {ECO:0000313|EMBL:ABX13333.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13333.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13333.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13333.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13333.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1437; -. DR EnsemblBacteria; ABX13333; ABX13333; Nmar_1437. DR KEGG; nmr:Nmar_1437; -. DR BioCyc; NMAR436308:GI3J-1472-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 285 306 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 311 AA; 35547 MW; 06E22F16512E658B CRC64; MKTSLLIIAG LLTLGGSLVL PTMSYAFAAC AAAPFGESMP CFDSFHVFHE PLTEELIMDS IYRNLETNYQ GWIQTDRNWA NNDVGYEHPT IICTAFDWKG QTHYRMLQWK DDYRLSSLED YRNDSMCDKW FPPMSLDASN PSFDCKEAVK NQIPTDWKYN CYDEPMGNPL RDISLSESDD PQRLEFILEH CEKHGPLDYV GKLRYLNDTH LIDLDTCQWD TRTNSGISLD RTVYTVPFSG EQSEQPKALC EDENTVLVDG VCVPKPKPSD FRDLQTGETI SNPEVIVIIQ SLGAVLIVLF IVIYAIKKRR K // ID A9A1P1_NITMS Unreviewed; 322 AA. AC A9A1P1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:ABX13556.1}; GN OrderedLocusNames=Nmar_1660 {ECO:0000313|EMBL:ABX13556.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13556.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13556.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13556.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13556.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1P1; -. DR EnsemblBacteria; ABX13556; ABX13556; Nmar_1660. DR KEGG; nmr:Nmar_1660; -. DR eggNOG; arCOG08113; Archaea. DR eggNOG; ENOG410ZVCB; LUCA. DR OMA; SWENINR; -. DR BioCyc; NMAR436308:GI3J-1705-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13556.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 322 AA; 34514 MW; A0B706FA3090FC10 CRC64; MRKKRSSKNK KFVLIVIPII IVGILLALPI QNNQNSPTSK LQGPWNDIHG VGMFLSGNDD TLYLATHQGL FEKKDSGWQH VGNDNADLMG FSMNHDTEKM YSSGHPKTGG NLGFRMSDDK GNSWTTISKV KNTPVDFHAM TASQAQNGLI YGSPGGGSEL FVTSDDGTSW NSLDIPNKII SLAADPLDPN RVYAGTMSGL YVSNNQGKQW TAVDSDIEKG VITGIGFSSD GKTMYVFSTL DGNGMIVKSI DGGKTMVKTQ SQIADAKGVW NFAPGRDGEI YAIAAQQVAS GLAMSVYKTD DGGATWVLEG TNNSELALTD ES // ID A9A652_NITMS Unreviewed; 58 AA. AC A9A652; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 39. DE SubName: Full=4-oxalocrotonate tautomerase {ECO:0000313|EMBL:ABX13530.1}; GN OrderedLocusNames=Nmar_1634 {ECO:0000313|EMBL:ABX13530.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13530.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13530.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13530.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13530.1; -; Genomic_DNA. DR ProteinModelPortal; A9A652; -. DR STRING; 436308.Nmar_1634; -. DR EnsemblBacteria; ABX13530; ABX13530; Nmar_1634. DR KEGG; nmr:Nmar_1634; -. DR eggNOG; arCOG02240; Archaea. DR eggNOG; COG1942; LUCA. DR HOGENOM; HOG000077848; -. DR KO; K01821; -. DR OMA; KENWFLA; -. DR BioCyc; NMAR436308:GI3J-1679-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016853; F:isomerase activity; IEA:InterPro. DR GO; GO:0006725; P:cellular aromatic compound metabolic process; IEA:InterPro. DR InterPro; IPR004370; 4-oxalocrotonate_tautomerase. DR InterPro; IPR014347; Tautomerase/MIF_sf. DR Pfam; PF01361; Tautomerase; 1. DR SUPFAM; SSF55331; SSF55331; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 56 4-oxalocrotonate_tautomerase. FT {ECO:0000259|Pfam:PF01361}. SQ SEQUENCE 58 AA; 6665 MW; 9D471112FE0782F3 CRC64; MPLITVSMYP GRTQEQKDEY AKAITKSAVE ILKTKENHVI VVFEDNPKEN WFLAGNQL // ID A9A122_NITMS Unreviewed; 361 AA. AC A9A122; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; DE EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787}; DE AltName: Full=Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; GN Name=cbiD {ECO:0000256|HAMAP-Rule:MF_00787}; GN OrderedLocusNames=Nmar_0083 {ECO:0000313|EMBL:ABX11983.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11983.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11983.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11983.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the methylation of C-1 in cobalt-precorrin-5B CC to form cobalt-precorrin-6A. {ECO:0000256|HAMAP-Rule:MF_00787}. CC -!- CATALYTIC ACTIVITY: Cobalt-precorrin-5B + S-adenosyl-L-methionine CC = cobalt-precorrin-6A + S-adenosyl-L-homocysteine. CC {ECO:0000256|HAMAP-Rule:MF_00787}. CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis; CC cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic CC route): step 6/10. {ECO:0000256|HAMAP-Rule:MF_00787}. CC -!- SIMILARITY: Belongs to the CbiD family. {ECO:0000256|HAMAP- CC Rule:MF_00787}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11983.1; -; Genomic_DNA. DR ProteinModelPortal; A9A122; -. DR STRING; 436308.Nmar_0083; -. DR EnsemblBacteria; ABX11983; ABX11983; Nmar_0083. DR KEGG; nmr:Nmar_0083; -. DR eggNOG; arCOG04383; Archaea. DR eggNOG; COG1903; LUCA. DR HOGENOM; HOG000009126; -. DR KO; K02188; -. DR OMA; MMVHSKS; -. DR BioCyc; NMAR436308:GI3J-84-MONOMER; -. DR UniPathway; UPA00148; UER00227. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0046140; P:corrin biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00787; CbiD; 1. DR InterPro; IPR002748; CbiD. DR Pfam; PF01888; CbiD; 1. DR PIRSF; PIRSF026782; CbiD; 1. DR SUPFAM; SSF111342; SSF111342; 1. DR TIGRFAMs; TIGR00312; cbiD; 1. PE 3: Inferred from homology; KW Cobalamin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00787}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00787}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00787}. SQ SEQUENCE 361 AA; 39296 MW; 1D3AEB4B4F4F4C3B CRC64; MAEEKKLRTG YTTGSSATAA SKAALLSIIK QQKIEEVEIT LPKKTTIKIP VNSCEFEKNK AKCSVIKDGG DDPDVTHGAE IIVELTFNEN KKQIEIDGGE GVGIVTKPGL GLEINKPAIN PVPKKMITEN LQEIGSDILH KKGIRVEISV PKGKELGPKT DNPRIGIKEG ISILGTSGIV IPFSTASYAA SIRQNLDVSI AMGNDTVVLT TGGRSEDFAK KIVDLPEHCF VQMGDFSGYT IQQCGRKNIK KAYVVGFIGK LAKMAAGVKQ THVKGSKVDM NFLAELARKV NADKKIIDDI KKANTARHVS EIIQENNVSG FFELICAEVY KHMRKHSEEK VPIDVILFDF EGNILAREPK G // ID A9A5T7_NITMS Unreviewed; 228 AA. AC A9A5T7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13092.1}; GN OrderedLocusNames=Nmar_1196 {ECO:0000313|EMBL:ABX13092.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13092.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13092.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13092.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13092.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13092; ABX13092; Nmar_1196. DR KEGG; nmr:Nmar_1196; -. DR eggNOG; arCOG08694; Archaea. DR eggNOG; ENOG411114C; LUCA. DR HOGENOM; HOG000106599; -. DR OMA; TFYQAGI; -. DR BioCyc; NMAR436308:GI3J-1229-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 36 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 66 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 86 107 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 127 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 181 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 193 211 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 228 AA; 25199 MW; 0C4BF223FE2D1A85 CRC64; MYNWTDTYES NNHKYLGLIL FGASASLAVI LFLIFHPQID EINKQSPILI NIMFIPAMAV GFLYGVRITE RAVKPSEIRS PLKRSIVKIF LFFFVIGGMF SSVNFAINGG SIMPDVSIFE DGLLPWLNSF ITANGGATFL IITSIALMAA ATKRIVGMNS GFLNRFVTSV GTFVFFTMLA LSFTKSDPTS SGVFLYTFYQ AGIVGGAFFA MNRLTKNQNM LEDYSNGF // ID A9A2M8_NITMS Unreviewed; 206 AA. AC A9A2M8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Cation efflux protein {ECO:0000313|EMBL:ABX13267.1}; GN OrderedLocusNames=Nmar_1371 {ECO:0000313|EMBL:ABX13267.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13267.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13267.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13267.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13267.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2M8; -. DR STRING; 436308.Nmar_1371; -. DR EnsemblBacteria; ABX13267; ABX13267; Nmar_1371. DR KEGG; nmr:Nmar_1371; -. DR eggNOG; arCOG01477; Archaea. DR eggNOG; COG1230; LUCA. DR HOGENOM; HOG000002625; -. DR OMA; GYFGIEI; -. DR BioCyc; NMAR436308:GI3J-1405-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR Gene3D; 1.20.1510.10; -; 1. DR InterPro; IPR002524; Cation_efflux. DR InterPro; IPR027469; Cation_efflux_TMD. DR PANTHER; PTHR11562; PTHR11562; 1. DR Pfam; PF01545; Cation_efflux; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 43 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 100 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 112 132 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 152 169 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 175 193 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 206 AA; 21989 MW; 1C4B54DD094BCD6C CRC64; MPDDDDLPKD LAHITPAYKR ALWVVVLINV GYGVAEMIGG FLADSQALKA DALDFLGDGS ITFLGLLAIG WGLRLRARSA LLQGIFLGAM GIAVLGYTIY RTQVLHVPEA GMMGVFGFGA LLINVIAVII LLPHRKGDAN VRAVWLFSRN DALGNILVIV GAGFVFLTGT SYPDLIVAGI IASLFLQSSF SIIKDARNDL KQSESS // ID A9A5T3_NITMS Unreviewed; 77 AA. AC A9A5T3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13088.1}; GN OrderedLocusNames=Nmar_1192 {ECO:0000313|EMBL:ABX13088.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13088.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13088.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13088.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13088.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1192; -. DR EnsemblBacteria; ABX13088; ABX13088; Nmar_1192. DR KEGG; nmr:Nmar_1192; -. DR eggNOG; arCOG08692; Archaea. DR eggNOG; ENOG411117S; LUCA. DR HOGENOM; HOG000106587; -. DR OMA; VAIYEVE; -. DR BioCyc; NMAR436308:GI3J-1225-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 77 AA; 9132 MW; 1EB905003B940596 CRC64; MPEITDEDRE RVELLRLVSS SKHEFKNLTL EQLKRLQELV EKKDYSHDKK AHKSKVKLLG KINVRIYEIT EGRGIWG // ID A9A2B4_NITMS Unreviewed; 70 AA. AC A9A2B4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12825.1}; GN OrderedLocusNames=Nmar_0929 {ECO:0000313|EMBL:ABX12825.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12825.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12825.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12825.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12825.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12825; ABX12825; Nmar_0929. DR KEGG; nmr:Nmar_0929; -. DR eggNOG; arCOG05330; Archaea. DR eggNOG; ENOG410Y66F; LUCA. DR HOGENOM; HOG000105649; -. DR OMA; TCDVVGC; -. DR BioCyc; NMAR436308:GI3J-957-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 70 AA; 7843 MW; 16DFB62B2436B2A5 CRC64; MGVVSKGAKC NVDGCDDDGA RSLNTSKVEN AGLRVNSSGK KTVLCKTHYK EYKKESKDDR ELERARFDRF // ID A9A3T0_NITMS Unreviewed; 93 AA. AC A9A3T0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13342.1}; GN OrderedLocusNames=Nmar_1446 {ECO:0000313|EMBL:ABX13342.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13342.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13342.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13342.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13342.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3T0; -. DR EnsemblBacteria; ABX13342; ABX13342; Nmar_1446. DR KEGG; nmr:Nmar_1446; -. DR eggNOG; arCOG01055; Archaea. DR eggNOG; COG3432; LUCA. DR HOGENOM; HOG000223779; -. DR OMA; HSRLSKF; -. DR BioCyc; NMAR436308:GI3J-1482-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 93 AA; 10253 MW; 1317C3ECD89390D9 CRC64; MVSYRTSMQI VADLLTVTEQ SGQEGIKTTS LLTKANLSHS RLSKFLDNLT GAGLINKIEY DGKNTFVITP KGRQYLESYA NFSSIAESFG LEL // ID A9A5N4_NITMS Unreviewed; 221 AA. AC A9A5N4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX13039.1}; GN OrderedLocusNames=Nmar_1143 {ECO:0000313|EMBL:ABX13039.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13039.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13039.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13039.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13039.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N4; -. DR STRING; 436308.Nmar_1143; -. DR EnsemblBacteria; ABX13039; ABX13039; Nmar_1143. DR KEGG; nmr:Nmar_1143; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000105582; -. DR OMA; ISACHDA; -. DR BioCyc; NMAR436308:GI3J-1175-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 221 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 221 AA; 24357 MW; D7AA604031970565 CRC64; MKIQYFSLIV IAAGVITVGA IFSTTSNDSE SINLDMNRKI GTVDTSLGSP ILGSPNAPIT IIEFGDYQCS NCKKWFLDTK PDIMTNYIDT GKVNLVFVDI AFLGKDSGPA SVATYCAEEQ GKYWEYHGFL YSNQMSIDNG WANSDSLKGY ANNLGLNMEM FVSCLDSEKY SKRVQFNTDE SKRNGVTGTP TFFVIGPNGE QEKIAGPQPY TVFEKTIESM T // ID A9A279_NITMS Unreviewed; 82 AA. AC A9A279; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12790.1}; GN OrderedLocusNames=Nmar_0894 {ECO:0000313|EMBL:ABX12790.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12790.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12790.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12790.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12790.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12790; ABX12790; Nmar_0894. DR KEGG; nmr:Nmar_0894; -. DR eggNOG; arCOG10562; Archaea. DR eggNOG; ENOG41110RD; LUCA. DR BioCyc; NMAR436308:GI3J-922-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 82 AA; 9650 MW; F0FC95E86DFEF790 CRC64; MDFQKFQNVK CICNESVNFE LIDEIECDWG NHVVIQCPKC QELFSIDNEC PAFHDVLDLE KNNFQLFSDK EKFDYASNSH PN // ID A9A213_NITMS Unreviewed; 229 AA. AC A9A213; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=Putative ATP binding protein {ECO:0000313|EMBL:ABX12426.1}; GN OrderedLocusNames=Nmar_0530 {ECO:0000313|EMBL:ABX12426.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12426.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12426.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12426.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12426.1; -; Genomic_DNA. DR ProteinModelPortal; A9A213; -. DR STRING; 436308.Nmar_0530; -. DR EnsemblBacteria; ABX12426; ABX12426; Nmar_0530. DR KEGG; nmr:Nmar_0530; -. DR eggNOG; arCOG00035; Archaea. DR eggNOG; COG2102; LUCA. DR HOGENOM; HOG000229449; -. DR OMA; YGLGKEW; -. DR BioCyc; NMAR436308:GI3J-552-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR002761; Diphthami_syn_dom. DR InterPro; IPR030662; DPH6/MJ0570. DR InterPro; IPR022427; MJ0570_ATP-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR PANTHER; PTHR12196; PTHR12196; 1. DR Pfam; PF01902; Diphthami_syn_2; 1. DR PIRSF; PIRSF039123; Diphthamide_synthase; 1. DR TIGRFAMs; TIGR03679; arCOG00187; 1. DR TIGRFAMs; TIGR00290; MJ0570_dom; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 221 Diphthami_syn_2. FT {ECO:0000259|Pfam:PF01902}. SQ SEQUENCE 229 AA; 25816 MW; 495883918929EEC8 CRC64; MKLASLFSGG KDSTYAIYLA KKHGHEIKCL LSIFTKSDES HLLHHPNIQW TKLQAESMKI PQITINSTSD DTDDELSLLE NLLKTAKDDY GIEGLVHGGI KSNFQKEKFE QVCSKYGLTV VAPLWNLEPE QYMGDLLQAN FIFIMITVSS DGLDDSWLGK TIGDSEIKTL KKLSDKFGFN LNFEGGESET FVIDCPLFSN SIKINQSEKK WDGYRGRFEI VDAELNYNA // ID A9A3K6_NITMS Unreviewed; 78 AA. AC A9A3K6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12938.1}; GN OrderedLocusNames=Nmar_1042 {ECO:0000313|EMBL:ABX12938.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12938.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12938.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12938.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12938.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1042; -. DR EnsemblBacteria; ABX12938; ABX12938; Nmar_1042. DR KEGG; nmr:Nmar_1042; -. DR eggNOG; arCOG08727; Archaea. DR eggNOG; ENOG411107A; LUCA. DR HOGENOM; HOG000107836; -. DR OMA; DYYSRYF; -. DR BioCyc; NMAR436308:GI3J-1073-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 78 AA; 9008 MW; 8566E907782B5D94 CRC64; MHDTEPDTFV YQTWPEKFSS MLKEIGIDSE SKEIGTDDVE QGDYYSRYFA HTARMITNRG CLDVKNSNID VIQIIQKG // ID A9A1U9_NITMS Unreviewed; 79 AA. AC A9A1U9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12070.1}; GN OrderedLocusNames=Nmar_0174 {ECO:0000313|EMBL:ABX12070.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12070.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12070.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12070.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12070.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0174; -. DR EnsemblBacteria; ABX12070; ABX12070; Nmar_0174. DR KEGG; nmr:Nmar_0174; -. DR eggNOG; arCOG10516; Archaea. DR eggNOG; ENOG4111068; LUCA. DR BioCyc; NMAR436308:GI3J-175-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 79 AA; 8823 MW; 8CD928A4D53FFF05 CRC64; MSPGIGLMKR RLEKEKDAIA LAVSGIAKKY NAVPDTIETL ETKYHEDAGD WYVALGWDEK KAIIKMDSVQ GTITEIKEI // ID A9A2P6_NITMS Unreviewed; 217 AA. AC A9A2P6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13573.1}; GN OrderedLocusNames=Nmar_1677 {ECO:0000313|EMBL:ABX13573.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13573.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13573.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13573.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13573.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1677; -. DR EnsemblBacteria; ABX13573; ABX13573; Nmar_1677. DR KEGG; nmr:Nmar_1677; -. DR eggNOG; ENOG4102U9Q; Archaea. DR eggNOG; ENOG4110ZK5; LUCA. DR BioCyc; NMAR436308:GI3J-1722-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 34 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 217 AA; 25047 MW; F59755CAFB9772EF CRC64; MNISKEVKLV RLSLIIAVIV STAGLMVLFT QFSYDDSGIT IMSSFGEITI FDPKQPSFLE NNMYHNSELS FQLSKPNDKW DIRVASETIR TEELAYLKSK GYVDGIYLDK DSDRRFLVSV FDVQSKNFQL ENYISKQIDM MNSEEIKIPI KRISKSNDWA IVSFDSEKNT DDSFSEQLLF LKDNKLYMIQ YSGKSPENLT ELEKSDFNSI LNSFEVI // ID A9A3L6_NITMS Unreviewed; 118 AA. AC A9A3L6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12948.1}; GN OrderedLocusNames=Nmar_1052 {ECO:0000313|EMBL:ABX12948.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12948.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12948.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12948.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12948.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12948; ABX12948; Nmar_1052. DR KEGG; nmr:Nmar_1052; -. DR eggNOG; arCOG08740; Archaea. DR eggNOG; ENOG41111FC; LUCA. DR HOGENOM; HOG000108191; -. DR OMA; MLWIPEP; -. DR BioCyc; NMAR436308:GI3J-1083-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 118 AA; 13041 MW; 8D04286B5D655B65 CRC64; MADPLKERLE KIRKISESAK RRANLYSDVA KMDDSRTARS LGALQKAPAP GKKLQKIGFL MLWIPEPTGV TCAVGGPMIV AGRYLEKKYN SATIHDIGHQ TKNTITSISD FKTSVMNH // ID A9A2Y2_NITMS Unreviewed; 464 AA. AC A9A2Y2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 49. DE SubName: Full=Dihydropyrimidinase {ECO:0000313|EMBL:ABX12110.1}; DE EC=3.5.2.2 {ECO:0000313|EMBL:ABX12110.1}; GN OrderedLocusNames=Nmar_0214 {ECO:0000313|EMBL:ABX12110.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12110.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12110.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12110.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12110.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Y2; -. DR STRING; 436308.Nmar_0214; -. DR EnsemblBacteria; ABX12110; ABX12110; Nmar_0214. DR KEGG; nmr:Nmar_0214; -. DR eggNOG; arCOG00689; Archaea. DR eggNOG; COG0044; LUCA. DR HOGENOM; HOG000219146; -. DR KO; K01464; -. DR OMA; GFHLMIS; -. DR BioCyc; NMAR436308:GI3J-219-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004157; F:dihydropyrimidinase activity; IEA:UniProtKB-EC. DR Gene3D; 2.30.40.10; -; 2. DR InterPro; IPR006680; Amidohydro-rel. DR InterPro; IPR011059; Metal-dep_hydrolase_composite. DR InterPro; IPR032466; Metal_Hydrolase. DR Pfam; PF01979; Amidohydro_1; 1. DR SUPFAM; SSF51338; SSF51338; 2. DR SUPFAM; SSF51556; SSF51556; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12110.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 52 441 Amidohydro-rel. FT {ECO:0000259|Pfam:PF01979}. SQ SEQUENCE 464 AA; 50855 MW; EAD7F4418B279FCA CRC64; MTYDAVIVDS HVILPQGMVD KNIVIDDGKV VSLTNDVPAC DNKINGNGLI SVPGPIDTHV HYGVYSPINE AAKTESHAAA IGGVTTMMRM LRLGDPFSNS LQDQLDAASQ NHYVDYAIHA SVFTPQQINE MDYCVKKGIT SFKIYMNLGG EIGHVYMDMP PNSSKLVAAN VDVTDEIVEQ TVKTAASLGC PVLVHAEDYE SCGCGIQTAR EKNQDGLSAW SESRSPEFEA KAIKTVSKFG RDYDCVIYFV HIGSEQALKQ IQEEKKLGTK IFVETCPHYL TLSYEKQNGY LAKVMPPIRT ETDRQAVWGA LSSNQIDTIG TDHVANQLKL KLGGDDVWSA LAGFPGIGTV LPIVLNDGVN QNKITLEQFV RFTSQNAAQI FGMYPQKGTL EKNSDADVTM IDLKKEKKVT SELFGGFSDY IVYEGRNLKG WPVKTIVRGE LIAEDFEVIG KLGHGKLVPR AIPK // ID A9A4V2_NITMS Unreviewed; 80 AA. AC A9A4V2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13406.1}; GN OrderedLocusNames=Nmar_1510 {ECO:0000313|EMBL:ABX13406.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13406.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13406.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13406.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13406.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1510; -. DR EnsemblBacteria; ABX13406; ABX13406; Nmar_1510. DR KEGG; nmr:Nmar_1510; -. DR eggNOG; arCOG01354; Archaea. DR eggNOG; ENOG410XXQ3; LUCA. DR BioCyc; NMAR436308:GI3J-1552-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR015419; CTAG/Pcc1. DR Pfam; PF09341; Pcc1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 80 AA; 9017 MW; 567D23CCE7817384 CRC64; MSLTCQVQIV LSNITKEKAE TVKKALEPDN VDFPEGLSLD VENVDNKLVF NFESKKNMKQ LIGTIDEVMD HIQVALKVIE // ID A9A5N3_NITMS Unreviewed; 402 AA. AC A9A5N3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Threonine dehydratase {ECO:0000313|EMBL:ABX12744.1}; GN OrderedLocusNames=Nmar_0848 {ECO:0000313|EMBL:ABX12744.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12744.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12744.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12744.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12744.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N3; -. DR STRING; 436308.Nmar_0848; -. DR EnsemblBacteria; ABX12744; ABX12744; Nmar_0848. DR KEGG; nmr:Nmar_0848; -. DR eggNOG; arCOG01431; Archaea. DR eggNOG; COG1171; LUCA. DR HOGENOM; HOG000046972; -. DR KO; K01754; -. DR OMA; WLRDIYT; -. DR BioCyc; NMAR436308:GI3J-875-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004794; F:L-threonine ammonia-lyase activity; IEA:InterPro. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0006567; P:threonine catabolic process; IEA:InterPro. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR000634; Ser/Thr_deHydtase_PyrdxlP-BS. DR InterPro; IPR005789; Thr_deHydtase_catblc. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR Pfam; PF00291; PALP; 1. DR SUPFAM; SSF53686; SSF53686; 1. DR TIGRFAMs; TIGR01127; ilvA_1Cterm; 1. DR PROSITE; PS51671; ACT; 1. DR PROSITE; PS00165; DEHYDRATASE_SER_THR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 327 402 ACT. {ECO:0000259|PROSITE:PS51671}. SQ SEQUENCE 402 AA; 42742 MW; 08EE8CA4FE56166F CRC64; MEPTFDEIQK ANSMRGNEIK KTPLIHSPTF SELTKSEVYL KAEFRQKTGS FKIRGAYYKI KSLSDEEKKQ GVVAASAGNH AQGVALASAL EEIPCTIVMP KNASPAKVAA TKGYGANVVL EGVNYDESSA KAKEIAKETG ATMIHAFDDP QIIAAQGVIG LEILEDLPDV DQVYLPIGGG GLAAGTLIAI KEKNPNVQVI GVQSRSFPSM YESVKQGSIT ASGGARTIAD GISVKVPGQL TFSVINELID EVVLVDDTEI TKAMFLLMER MKFVVEPAGA ASLAYLISKK PAPGKKVVAV LAGGNVDMYL LGQIVDKGLA AMGRLLKLSV LLPDRPGSFK EIVDVITLAN ANIVEVVHDR LSSNVNAGSA SVTMNLETQG KEQADALIEA LRKKDVQFTL LT // ID A9A2P8_NITMS Unreviewed; 208 AA. AC A9A2P8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13575.1}; GN OrderedLocusNames=Nmar_1679 {ECO:0000313|EMBL:ABX13575.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13575.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13575.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13575.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13575.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13575; ABX13575; Nmar_1679. DR KEGG; nmr:Nmar_1679; -. DR eggNOG; arCOG08818; Archaea. DR eggNOG; ENOG41111BQ; LUCA. DR HOGENOM; HOG000110621; -. DR OMA; NIHAISW; -. DR BioCyc; NMAR436308:GI3J-1724-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 182 203 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 208 AA; 22900 MW; 490226D57729AB1B CRC64; MSPVFAQEVK NPSLIIETIE IPAKEFDTIQ REASIVELDN IHAISWQVTI DNNLNYVNSE GNAVFRLYDT NSEDKFIEIG MGSKPEDKFW VAVQTPKEGY VVVHKDLERG WYPEAKSIAS FTDRAGLTVN NGARIVVTNL DIGEFAIGSY SVYGKEGSTE PTAVNTGSLI LEIMSGDPAK NIFALFPFYI AAGVGIIVGV LYITKKRS // ID A9A3D8_NITMS Unreviewed; 175 AA. AC A9A3D8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12870.1}; GN OrderedLocusNames=Nmar_0974 {ECO:0000313|EMBL:ABX12870.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12870.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12870.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12870.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12870.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0974; -. DR EnsemblBacteria; ABX12870; ABX12870; Nmar_0974. DR KEGG; nmr:Nmar_0974; -. DR eggNOG; arCOG04848; Archaea. DR eggNOG; COG3272; LUCA. DR OMA; HPANTRD; -. DR BioCyc; NMAR436308:GI3J-1002-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR013560; DUF1722. DR Pfam; PF08349; DUF1722; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 45 160 DUF1722. {ECO:0000259|Pfam:PF08349}. SQ SEQUENCE 175 AA; 20697 MW; C190AA20C702F380 CRC64; MNKKQEMTGT SRLSEHDIKE YVLERFKEVK KEKIKNLVSF QSMNKYMIMA HNQDELQILG NIVAGYKKIS LLDIMTEYEK HLKMALEKPP TIKSHSNVIM HIFGYFSKNF SQLEKEQFFK LLNEFKGEEI TIGKILSEIN PIIYRFNNTY LANQTYFLLY SDPQPGNLFH MLSQK // ID A9A3W4_NITMS Unreviewed; 140 AA. AC A9A3W4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=UspA domain protein {ECO:0000313|EMBL:ABX13664.1}; GN OrderedLocusNames=Nmar_1768 {ECO:0000313|EMBL:ABX13664.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13664.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13664.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13664.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13664.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3W4; -. DR STRING; 436308.Nmar_1768; -. DR EnsemblBacteria; ABX13664; ABX13664; Nmar_1768. DR KEGG; nmr:Nmar_1768; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR HOGENOM; HOG000238897; -. DR OMA; PVISQRM; -. DR BioCyc; NMAR436308:GI3J-1815-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006015; Universal_stress_UspA. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. DR PRINTS; PR01438; UNVRSLSTRESS. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 140 Usp. {ECO:0000259|Pfam:PF00582}. SQ SEQUENCE 140 AA; 14834 MW; D2384AE0EBC59AAA CRC64; MGKFSKILVP LDGSANATRG LDRAIEIAKG SGAEITGFYV FHLPIAAGIK YTQKMKDDAQ KKAVKAIGPA MQKAQKAGAK FKYQTGGGHT GSEIVKYAKK GKFDMIVIGA RGMGGAKEAF LGSTSNYVMH KTKIPVLVVK // ID A9A2V4_NITMS Unreviewed; 164 AA. AC A9A2V4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13631.1}; GN OrderedLocusNames=Nmar_1735 {ECO:0000313|EMBL:ABX13631.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13631.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13631.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13631.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13631.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2V4; -. DR EnsemblBacteria; ABX13631; ABX13631; Nmar_1735. DR KEGG; nmr:Nmar_1735; -. DR eggNOG; arCOG03788; Archaea. DR eggNOG; ENOG410XUXB; LUCA. DR HOGENOM; HOG000109357; -. DR OMA; TAWSIVE; -. DR BioCyc; NMAR436308:GI3J-1780-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 164 AA; 17949 MW; BED8F0DD55BBA8A8 CRC64; MALQSRMTVY VAIAGVLALM GGIVFYASLD NAQLEQAEIE LFSVELIDVD NVKNQAKFDV TFLVKNPSDK AFTVGVIDYQ LFTDGVELGS GQYSAMDVAL PGRAVFSSGD QIPLKSIFVL TKSETSPEIY EDMINERINS FSAEGMLTTQ TSWSTIDKEF STGF // ID A9A5R2_NITMS Unreviewed; 126 AA. AC A9A5R2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13067.1}; GN OrderedLocusNames=Nmar_1171 {ECO:0000313|EMBL:ABX13067.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13067.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13067.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13067.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13067.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13067; ABX13067; Nmar_1171. DR KEGG; nmr:Nmar_1171; -. DR eggNOG; arCOG08747; Archaea. DR eggNOG; ENOG41111BR; LUCA. DR HOGENOM; HOG000108412; -. DR OMA; WIRVAGH; -. DR BioCyc; NMAR436308:GI3J-1203-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 126 AA; 13947 MW; 3D461629C854FA1A CRC64; MEIQEISPVV IYDNACHLCA KFASTVNFFA RGKIALVGHY SETGEKLRKQ YLDSSATEMF WFIDGKNAYG GRAALLPLIG EILFSKKRAP IQTIVEETCD AGCKAPNAVF VRSASLFTHS KKIKIN // ID A9A2E3_NITMS Unreviewed; 140 AA. AC A9A2E3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Cobalamin B12-binding domain protein {ECO:0000313|EMBL:ABX12854.1}; GN OrderedLocusNames=Nmar_0958 {ECO:0000313|EMBL:ABX12854.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12854.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12854.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12854.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12854.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E3; -. DR STRING; 436308.Nmar_0958; -. DR EnsemblBacteria; ABX12854; ABX12854; Nmar_0958. DR KEGG; nmr:Nmar_0958; -. DR eggNOG; arCOG01710; Archaea. DR eggNOG; COG2185; LUCA. DR HOGENOM; HOG000011065; -. DR KO; K01849; -. DR OMA; IRCLVAK; -. DR BioCyc; NMAR436308:GI3J-986-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031419; F:cobalamin binding; IEA:InterPro. DR GO; GO:0016853; F:isomerase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.40.50.280; -; 1. DR InterPro; IPR006159; Acid_CoA_mut_C. DR InterPro; IPR006158; Cobalamin-bd. DR Pfam; PF02310; B12-binding; 1. DR SUPFAM; SSF52242; SSF52242; 1. DR TIGRFAMs; TIGR00640; acid_CoA_mut_C; 1. DR PROSITE; PS51332; B12_BINDING; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 137 B12-binding. FT {ECO:0000259|PROSITE:PS51332}. SQ SEQUENCE 140 AA; 15081 MW; E15F0A3E80C4300C CRC64; MKQKTQTRNI KILVAKLGLD GHDRGALVLC RAFRDAGMEV IYSGLFATPE RVAQIAEDED VDAIAMSLLN GAHGTLFPRV VKALKKKKIN DVLVVGGGVI PEIDHKDLIK AGVDHVFGPG TPLPTIIDHI NTGVGKLRKI // ID A9A639_NITMS Unreviewed; 284 AA. AC A9A639; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=Citryl-CoA lyase {ECO:0000313|EMBL:ABX13517.1}; DE EC=4.1.3.34 {ECO:0000313|EMBL:ABX13517.1}; GN OrderedLocusNames=Nmar_1621 {ECO:0000313|EMBL:ABX13517.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13517.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13517.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13517.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13517.1; -; Genomic_DNA. DR ProteinModelPortal; A9A639; -. DR STRING; 436308.Nmar_1621; -. DR EnsemblBacteria; ABX13517; ABX13517; Nmar_1621. DR KEGG; nmr:Nmar_1621; -. DR eggNOG; arCOG00760; Archaea. DR eggNOG; COG2301; LUCA. DR HOGENOM; HOG000242282; -. DR KO; K01644; -. DR OMA; VGSTKLM; -. DR BioCyc; NMAR436308:GI3J-1665-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008816; F:citryl-CoA lyase activity; IEA:UniProtKB-EC. DR Gene3D; 3.20.20.60; -; 1. DR InterPro; IPR005000; Aldolase/citrate-lyase_domain. DR InterPro; IPR011206; Citrate_lyase_beta/mcl1/mcl2. DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. DR PANTHER; PTHR32308; PTHR32308; 1. DR Pfam; PF03328; HpcH_HpaI; 1. DR PIRSF; PIRSF015582; Cit_lyase_B; 1. DR SUPFAM; SSF51621; SSF51621; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX13517.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 223 HpcH_HpaI. {ECO:0000259|Pfam:PF03328}. SQ SEQUENCE 284 AA; 31574 MW; 1070C8A5B7C6D876 CRC64; MTQLFRSLIF VPGNNPRFLE KAKKLQADIV CFDLEDSVPD NEKVNARKLI KTALKSKKSY ESSIFVRTNS TLSGKIPADL KEIVQKGIDG IVIPKVNNTK ELKKIEKIIS ELEKKRKLKP IQLIPSIESA EGVVNTYQIA SSSKRVVAVV FGVFDLLNDL GVEYTKDADG AKYSRRKIPV DARAAGVAAI DAIWQDLKDS KGLENDCKVG KSLGYSGKSI IHPDHISVTH KLFHPNKNEI EWAEKVCKIY LESTKKGKGA TTVEGKMIDE VHFKQAKALL DLVK // ID A9A267_NITMS Unreviewed; 551 AA. AC A9A267; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12480.1}; GN OrderedLocusNames=Nmar_0584 {ECO:0000313|EMBL:ABX12480.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12480.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12480.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12480.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12480.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12480; ABX12480; Nmar_0584. DR KEGG; nmr:Nmar_0584; -. DR eggNOG; arCOG08800; Archaea. DR eggNOG; ENOG4111147; LUCA. DR BioCyc; NMAR436308:GI3J-607-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 345 372 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 551 AA; 63310 MW; 3DFCEEF77DE11D91 CRC64; MLVMGVFFTI FLNSAHAQTV GDQTTLSGDL QNNPIAQDIL KKIEQSKKWI AKIEQRNFED SQRQAELEQK RAEILQSLED DLRKWEELWG YYTFDNILER ALENSPAKDT SSIYDHPLKF TASKINAGKE ALQKVILEGG NSEQARDAFV KAAKITRAEM VSVNAFYNIL NNNAYYNQQV LFESDGRFNY DLSGEELRKY YQDFRTNPAY FEANPLDEVS WSDLGKTNFD TECRTGHVLV YRTHADDYVC TTEYTAEMWV RHDMGKLANG INEERHNLLN EQKFNKDRIL QKADSLNSKI KTIQTHYEAE ISEILAKYDS LMTDIELDKR AEEKQILENS DSDSKKTISQ QIANIREKFD ELEKNTLDEK DDVLKILANQ HITSIEEFAS LYELDDEIKI EWNADSLTFY PSAYYFPQQS ESSLIVKTSS ENTISDFLVD DTSFKNAFGE KIHSLKPGQL VQIASDVTNN DNFSKKFVYL VEIKDEQNQI VQPLKWITGQ LDSDQVLNLG LSWIPQTPGN FYADVFVGTS LDFVSHTETI SISVTPQDHL S // ID A9A1E7_NITMS Unreviewed; 62 AA. AC A9A1E7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13126.1}; GN OrderedLocusNames=Nmar_1230 {ECO:0000313|EMBL:ABX13126.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13126.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13126.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13126.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13126.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1230; -. DR EnsemblBacteria; ABX13126; ABX13126; Nmar_1230. DR KEGG; nmr:Nmar_1230; -. DR eggNOG; arCOG08719; Archaea. DR eggNOG; ENOG41110FJ; LUCA. DR HOGENOM; HOG000107646; -. DR OMA; CEMHEDT; -. DR BioCyc; NMAR436308:GI3J-1263-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 62 AA; 7319 MW; 5665626A32DABA4E CRC64; MVEHKYSKWT VEGDKKTEWI CGCFQTADNF FKFCEMHEDT LKKAIQAQVD ELDMTQVVEE KA // ID A9A2M6_NITMS Unreviewed; 56 AA. AC A9A2M6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13265.1}; GN OrderedLocusNames=Nmar_1369 {ECO:0000313|EMBL:ABX13265.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13265.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13265.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13265.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13265.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13265; ABX13265; Nmar_1369. DR KEGG; nmr:Nmar_1369; -. DR eggNOG; arCOG08651; Archaea. DR eggNOG; ENOG411110E; LUCA. DR BioCyc; NMAR436308:GI3J-1403-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 5 32 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 56 AA; 6441 MW; 0CD873A9EE0A2127 CRC64; MSSEAETIYE RVAKLEDEIA LLRSEVDILK RALRNKIARH EISMIKKGND IDSIID // ID A9A585_NITMS Unreviewed; 99 AA. AC A9A585; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:ABX12284.1}; GN OrderedLocusNames=Nmar_0388 {ECO:0000313|EMBL:ABX12284.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12284.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12284.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12284.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12284.1; -; Genomic_DNA. DR ProteinModelPortal; A9A585; -. DR STRING; 436308.Nmar_0388; -. DR EnsemblBacteria; ABX12284; ABX12284; Nmar_0388. DR KEGG; nmr:Nmar_0388; -. DR eggNOG; arCOG02724; Archaea. DR eggNOG; COG0350; LUCA. DR HOGENOM; HOG000244138; -. DR KO; K00567; -. DR OMA; AINKPLA; -. DR BioCyc; NMAR436308:GI3J-405-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003908; F:methylated-DNA-[protein]-cysteine S-methyltransferase activity; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001497; MethylDNA_cys_MeTrfase_AS. DR InterPro; IPR014048; MethylDNA_cys_MeTrfase_DNA-bd. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01035; DNA_binding_1; 1. DR SUPFAM; SSF46767; SSF46767; 1. DR TIGRFAMs; TIGR00589; ogt; 1. DR PROSITE; PS00374; MGMT; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12284.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12284.1}. FT DOMAIN 4 82 DNA_binding_1. FT {ECO:0000259|Pfam:PF01035}. SQ SEQUENCE 99 AA; 11236 MW; 927E4B53799ACDD7 CRC64; MNLEKKIYKK LLEVPKGQIT TYGELAKAVG LKNGQRAVGR IMNKNPYPVI IPCHRVVMSN GKVGGYAYGE HIKTKMLNDE GIKIENGKIL DWEKTVYRF // ID A9A1I9_NITMS Unreviewed; 138 AA. AC A9A1I9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 38. DE SubName: Full=UspA domain protein {ECO:0000313|EMBL:ABX13168.1}; GN OrderedLocusNames=Nmar_1272 {ECO:0000313|EMBL:ABX13168.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13168.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13168.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13168.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13168.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I9; -. DR STRING; 436308.Nmar_1272; -. DR EnsemblBacteria; ABX13168; ABX13168; Nmar_1272. DR KEGG; nmr:Nmar_1272; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR HOGENOM; HOG000238897; -. DR OMA; VIDTHYL; -. DR BioCyc; NMAR436308:GI3J-1305-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006015; Universal_stress_UspA. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. DR PRINTS; PR01438; UNVRSLSTRESS. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 138 Usp. {ECO:0000259|Pfam:PF00582}. SQ SEQUENCE 138 AA; 15027 MW; 97C894D068E3C47D CRC64; MDLNRILVPL DGSKKSFQAL DRALTLAGFT HGQVTCIHVI PHVIDGGPRT KTFDKQLQED GKILLKKAEK RAGNKNVKFS TKLLRGSPGH VTLHTARTGK FDHIVMSTTG SGSASKDMIG SVSNHVLQKS KIPVYLIK // ID A9A1I6_NITMS Unreviewed; 382 AA. AC A9A1I6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABX13165.1}; GN OrderedLocusNames=Nmar_1269 {ECO:0000313|EMBL:ABX13165.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13165.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13165.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13165.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13165.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1I6; -. DR STRING; 436308.Nmar_1269; -. DR EnsemblBacteria; ABX13165; ABX13165; Nmar_1269. DR KEGG; nmr:Nmar_1269; -. DR eggNOG; arCOG00130; Archaea. DR eggNOG; COG0477; LUCA. DR HOGENOM; HOG000107544; -. DR OMA; HSAATMI; -. DR BioCyc; NMAR436308:GI3J-1302-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR011701; MFS. DR InterPro; IPR020846; MFS_dom. DR Pfam; PF07690; MFS_1; 1. DR SUPFAM; SSF103473; SSF103473; 1. DR PROSITE; PS50850; MFS; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 31 52 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 58 77 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 89 107 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 113 134 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 146 165 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 171 192 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 213 232 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 244 265 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 277 294 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 300 322 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 334 355 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 361 380 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 22 382 MFS. {ECO:0000259|PROSITE:PS50850}. SQ SEQUENCE 382 AA; 41873 MW; 8791376AD905E3D0 CRC64; MIRMLKLGQT EFSSTFMQKV QVNNLVRSAT FFQHAGISIV FVFMPIIAQG VTESVFEIGL LVASFSFAQI LSEIYFGRHS DKKGTRLKFI RIGFIGCAIA FGMHYFATDL SMFFLVRIAA GIASGIMIPA MIAYTYEANV DKKRAATVIS FHALGWMAGI AAAGLANDLQ LIFLISAASF VVGLLFTIRL PNPEQEKEVE PGTTKRVISK NKFLFLSLLL RHIGAAAVWT ILPIMIVDRW GGELYHISIV YTANTMTAFI LMNVMASKIH LSNVTKFKIG VGSTTFVFVG LSFVTEWWMA MPFMSLVGAT WAFLFIGGNF HLMDNNPRST STGIFSSTLS IATVVGPVIA GGIAFAFDYV AVMYFAIAII VSAFAVSLKI KK // ID A9A1L1_NITMS Unreviewed; 55 AA. AC A9A1L1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13190.1}; GN OrderedLocusNames=Nmar_1294 {ECO:0000313|EMBL:ABX13190.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13190.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13190.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13190.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13190.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1294; -. DR EnsemblBacteria; ABX13190; ABX13190; Nmar_1294. DR KEGG; nmr:Nmar_1294; -. DR eggNOG; arCOG01588; Archaea. DR eggNOG; ENOG410ZHZ7; LUCA. DR HOGENOM; HOG000105320; -. DR KO; K05826; -. DR OMA; QTVGEDW; -. DR BioCyc; NMAR436308:GI3J-1327-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 55 AA; 5781 MW; 80348DE4268D12AC CRC64; MSKCEECDAD ISIPSDALEG EIVTCPECGA SFELAKGSDG FDLKPAQTVG EDWGQ // ID A9A2L7_NITMS Unreviewed; 258 AA. AC A9A2L7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13256.1}; GN OrderedLocusNames=Nmar_1360 {ECO:0000313|EMBL:ABX13256.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13256.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13256.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13256.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13256.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1360; -. DR EnsemblBacteria; ABX13256; ABX13256; Nmar_1360. DR KEGG; nmr:Nmar_1360; -. DR eggNOG; arCOG04715; Archaea. DR eggNOG; COG2968; LUCA. DR HOGENOM; HOG000242652; -. DR KO; K09807; -. DR OMA; TNNVQRI; -. DR BioCyc; NMAR436308:GI3J-1394-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007497; DUF541. DR Pfam; PF04402; SIMPL; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 258 AA; 27614 MW; FC2364EC89787CC6 CRC64; MNKKQLTVVM LSVLVVAVSA TAVSSEADAQ KPTSMLSFEK TIDVVGIGMI STDPDLLTIR LGLETKGDTA NDALTANSAQ MSKILQALKS VGISESEIST SSLNIRPQYE YVYDETRDRD TRTLVGYEAS NIVTVETKSL DLAASIIDAS VNAGANKVDS VYYSLSTETQ MSLKDQLLEQ AVINAQEKAK NVLAPLDQKI IGVKSISVSE FGIPTPYPVF SGSNMVFDAA MKSSSTQLFS SEQDVTASVH VVFHIGSN // ID A9A427_NITMS Unreviewed; 313 AA. AC A9A427; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 64. DE RecName: Full=Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; DE Short=MK {ECO:0000256|HAMAP-Rule:MF_00217}; DE Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217}; DE EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217}; GN Name=mvk {ECO:0000256|HAMAP-Rule:MF_00217}; GN OrderedLocusNames=Nmar_0315 {ECO:0000313|EMBL:ABX12211.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12211.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12211.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12211.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the phosphorylation of (R)-mevalonate (MVA) to CC (R)-mevalonate 5-phosphate (MVAP). Functions in the mevalonate CC (MVA) pathway leading to isopentenyl diphosphate (IPP), a key CC precursor for the biosynthesis of isoprenoid compounds such as CC archaeal membrane lipids. {ECO:0000256|HAMAP-Rule:MF_00217}. CC -!- CATALYTIC ACTIVITY: ATP + (R)-mevalonate = ADP + (R)-5- CC phosphomevalonate. {ECO:0000256|HAMAP-Rule:MF_00217}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00217}; CC -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate CC biosynthesis via mevalonate pathway; isopentenyl diphosphate from CC (R)-mevalonate: step 1/3. {ECO:0000256|HAMAP-Rule:MF_00217}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00217}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00217}. CC -!- SIMILARITY: Belongs to the GHMP kinase family. Mevalonate kinase CC subfamily. {ECO:0000256|HAMAP-Rule:MF_00217}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12211.1; -; Genomic_DNA. DR ProteinModelPortal; A9A427; -. DR STRING; 436308.Nmar_0315; -. DR EnsemblBacteria; ABX12211; ABX12211; Nmar_0315. DR KEGG; nmr:Nmar_0315; -. DR eggNOG; arCOG01028; Archaea. DR eggNOG; COG1577; LUCA. DR HOGENOM; HOG000080810; -. DR KO; K00869; -. DR OMA; MEQEFHG; -. DR BioCyc; NMAR436308:GI3J-329-MONOMER; -. DR UniPathway; UPA00057; UER00098. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004496; F:mevalonate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0019287; P:isopentenyl diphosphate biosynthetic process, mevalonate pathway; IEA:UniProtKB-UniPathway. DR Gene3D; 3.30.230.10; -; 1. DR Gene3D; 3.30.70.890; -; 1. DR HAMAP; MF_00217; Mevalonate_kinase; 1. DR InterPro; IPR013750; GHMP_kinase_C_dom. DR InterPro; IPR006204; GHMP_kinase_N_dom. DR InterPro; IPR006203; GHMP_knse_ATP-bd_CS. DR InterPro; IPR006205; Mev_gal_kin. DR InterPro; IPR006206; Mevalonate/galactokinase. DR InterPro; IPR022937; Mevalonate_kinase_arc. DR InterPro; IPR020568; Ribosomal_S5_D2-typ_fold. DR InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr. DR PANTHER; PTHR10457; PTHR10457; 1. DR Pfam; PF08544; GHMP_kinases_C; 1. DR Pfam; PF00288; GHMP_kinases_N; 1. DR PRINTS; PR00959; MEVGALKINASE. DR SUPFAM; SSF54211; SSF54211; 1. DR SUPFAM; SSF55060; SSF55060; 1. DR TIGRFAMs; TIGR00549; mevalon_kin; 1. DR PROSITE; PS00627; GHMP_KINASES_ATP; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00217, KW ECO:0000256|RuleBase:RU003563}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00217}; KW Isoprene biosynthesis {ECO:0000256|HAMAP-Rule:MF_00217}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00217, KW ECO:0000256|RuleBase:RU003563, ECO:0000313|EMBL:ABX12211.1}; KW Lipid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00217}; KW Lipid metabolism {ECO:0000256|HAMAP-Rule:MF_00217}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00217}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00217, KW ECO:0000256|RuleBase:RU003563}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00217, KW ECO:0000256|RuleBase:RU003563, ECO:0000313|EMBL:ABX12211.1}. FT DOMAIN 89 155 GHMP_kinases_N. FT {ECO:0000259|Pfam:PF00288}. FT DOMAIN 220 296 GHMP_kinases_C. FT {ECO:0000259|Pfam:PF08544}. FT ACT_SITE 147 147 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00217}. SQ SEQUENCE 313 AA; 34431 MW; 470C5EC2BD54CA0E CRC64; MKSKASAPGK VILFGEHFVV YGVKAILCAI NKRIAVTAEK IDERKISIKS NIGHLELEPN KPISEINSPL KPFYYLANKI IQDKNFGIKI DVESEIPLGV GLGSSSACCV AGAAAISNLF ENNSKEEILK LAIEAEKTIF QNTSGADCTV CTFGGLMEYD KENGFSKIES EPNFHLVIAN SNVEHSTESV VAGVRKFKKN NEAEFSKLCK DESHLIENVL ELLKENNIRE LGERVIKNQE YLERIGISNA KLREMIQTGQ NSSFGAKITG AGGGGCIFAL TDESNLENTI KEFKEKNHEC FSVKIDFKGL DTF // ID A9A5E4_NITMS Unreviewed; 142 AA. AC A9A5E4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12343.1}; GN OrderedLocusNames=Nmar_0447 {ECO:0000313|EMBL:ABX12343.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12343.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12343.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12343.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12343.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0447; -. DR EnsemblBacteria; ABX12343; ABX12343; Nmar_0447. DR KEGG; nmr:Nmar_0447; -. DR eggNOG; arCOG08731; Archaea. DR eggNOG; ENOG41110NR; LUCA. DR HOGENOM; HOG000107991; -. DR OMA; VFMIQLP; -. DR BioCyc; NMAR436308:GI3J-465-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 142 AA; 15903 MW; 252B2E96C4D7494B CRC64; MSDELKRMLE QVHTGITTFD FEGKETPCIV IDAKKYENIR AKVEGQPFAV NTDLNILQDG LGNVFVEVVL TFSIGNISEK YLVNAKTDLQ FFETLAQTSM FVLNSPESQY GKDNVIAIQL PRPEKAHDAL EIIKSALVPK NQ // ID A9A269_NITMS Unreviewed; 199 AA. AC A9A269; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12780.1}; GN OrderedLocusNames=Nmar_0884 {ECO:0000313|EMBL:ABX12780.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12780.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12780.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12780.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12780.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12780; ABX12780; Nmar_0884. DR KEGG; nmr:Nmar_0884; -. DR eggNOG; arCOG10557; Archaea. DR eggNOG; ENOG4111039; LUCA. DR BioCyc; NMAR436308:GI3J-912-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 29 50 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 199 AA; 22458 MW; 31C91FE551CF841B CRC64; MGRKERRARE QKRENYATKH SAQQRKQTLI AVGVLAVIAV IVGYAGWMFV NMDQSTAPGG PENAGALGSD HTHAALAVRV FGDYFDFSAP AYQIKSPWIH FEGRDGSTIH KHATGVTLDY LFESLSLGLD DKCFVFQDGR EFCTNEDYSL KFFYNGKQVQ DIRDIEIMED DRILISYGGE TPEELESQLI ELENQIIVK // ID A9A4Z9_NITMS Unreviewed; 451 AA. AC A9A4Z9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 53. DE SubName: Full=FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ABX11908.1}; GN OrderedLocusNames=Nmar_0008 {ECO:0000313|EMBL:ABX11908.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11908.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11908.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11908.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11908.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Z9; -. DR STRING; 436308.Nmar_0008; -. DR EnsemblBacteria; ABX11908; ABX11908; Nmar_0008. DR KEGG; nmr:Nmar_0008; -. DR eggNOG; arCOG01067; Archaea. DR eggNOG; COG1252; LUCA. DR HOGENOM; HOG000241052; -. DR KO; K03885; -. DR OMA; GNDQWAE; -. DR BioCyc; NMAR436308:GI3J-8-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 2. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR Pfam; PF07992; Pyr_redox_2; 1. DR SUPFAM; SSF51905; SSF51905; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 377 396 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 6 343 FAD/NAD-binding_dom. FT {ECO:0000259|Pfam:PF07992}. SQ SEQUENCE 451 AA; 51141 MW; 5734D0463F07208B CRC64; MARNKKKIVV LGGGFAGLEC TRKLEEYFKN DSEIEIVLVS EDNFLLFTPM LPQVASGMIE TRHIVMPIRT ITKKATFYEG RVKNIDPYGK IVNLWGSGNK RGISLHYDFL VVALGSETNF FGMNDLEKNA YQMKTLNDAV MVRNRMIDML EQAENETNPI LKHSLLTFVV VGGGFAGIET AGEIMDLLLD VRKYYPNIKK EDIRVVVLEA LPNILPGFSE SLAKFAQEKL TEHGIEIKLQ TAVTSFDGDE VMIKRLDVDK DASDDSVISS IQTKTVIWTA GVTPVNTIKR SLFKTDKGKI IVDKNLEVND FPGVFAIGDC ALFMDPNSQR PFPPTAQIAE AQAKIAAKNL HALIRNEEKT EFTYESKGQM AIIGKRTGIA SFLGMNIHGI FAWFLWRNIY LSKIPTWDKR FRVFLDWTAD AIFDRDISRL KFMRREPEKE YKVLDEVDDV W // ID A9A5Z0_NITMS Unreviewed; 183 AA. AC A9A5Z0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13468.1}; GN OrderedLocusNames=Nmar_1572 {ECO:0000313|EMBL:ABX13468.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13468.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13468.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13468.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13468.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1572; -. DR EnsemblBacteria; ABX13468; ABX13468; Nmar_1572. DR KEGG; nmr:Nmar_1572; -. DR eggNOG; arCOG05463; Archaea. DR eggNOG; ENOG410Y6R8; LUCA. DR HOGENOM; HOG000110943; -. DR OMA; WTLEKVY; -. DR BioCyc; NMAR436308:GI3J-1616-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 183 AA; 20776 MW; 8CF3E0E0B012EEE8 CRC64; MKGIVTLKES LIEQVDKHQE AIEALEKNIT ILDMFLKESS FTKASQLPPA EKIEPQKIKE SVKEVQNSIP ITQGKDGKVI ANAFVTPEQV SIVLDDNVEI SADTPPFKSF FLDRIIGEMK KKDSTDAENG KIQRESMIDY IINKNGSDIR EIIIKNYRQK ERVNELINTA GWSLSRMLEN INK // ID A9A150_NITMS Unreviewed; 150 AA. AC A9A150; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12011.1}; GN OrderedLocusNames=Nmar_0111 {ECO:0000313|EMBL:ABX12011.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12011.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12011.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12011.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12011.1; -; Genomic_DNA. DR ProteinModelPortal; A9A150; -. DR SMR; A9A150; 12-150. DR STRING; 436308.Nmar_0111; -. DR EnsemblBacteria; ABX12011; ABX12011; Nmar_0111. DR KEGG; nmr:Nmar_0111; -. DR eggNOG; arCOG04214; Archaea. DR eggNOG; COG0432; LUCA. DR HOGENOM; HOG000123402; -. DR OMA; CLVNAMH; -. DR BioCyc; NMAR436308:GI3J-114-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.120.460; -; 1. DR InterPro; IPR001602; UPF0047. DR Pfam; PF01894; UPF0047; 1. DR PIRSF; PIRSF004681; UCP004681; 1. DR SUPFAM; SSF111038; SSF111038; 1. DR TIGRFAMs; TIGR00149; TIGR00149_YjbQ; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 150 AA; 17327 MW; 3B6AF723A9E373CD CRC64; MILIDDYFRK IMNSFTEYLT FNVEARRGFV NITPDIRKLV TKSKVKEGLC LVNAMHITAS VFINDNEGGL LHDYEKWLEE LAPHAPVDQY RHNDTGEDNA DAHLKRQVMG REVVIAITNS ELDFGPWEQI FYGEFDGKRP KRVLVKIIGE // ID A9A3K9_NITMS Unreviewed; 125 AA. AC A9A3K9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX12941.1}; GN OrderedLocusNames=Nmar_1045 {ECO:0000313|EMBL:ABX12941.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12941.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12941.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12941.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12941.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3K9; -. DR STRING; 436308.Nmar_1045; -. DR EnsemblBacteria; ABX12941; ABX12941; Nmar_1045. DR KEGG; nmr:Nmar_1045; -. DR eggNOG; arCOG02385; Archaea. DR eggNOG; COG0784; LUCA. DR BioCyc; NMAR436308:GI3J-1076-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 119 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 125 AA; 13811 MW; 373322976F2484AA CRC64; MKILHIDDNA TFTEVLSKLL ELHDHTCDVS NDGKEALQMA LTNKYDAIIL DLDMPEFTGN DFIDELVKVG VISSQNIIVL TGLLPSEQEV QDMISKGVKI CVEKPISIEK LNDILVSLTI KPSTS // ID A9A1E9_NITMS Unreviewed; 125 AA. AC A9A1E9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13128.1}; GN OrderedLocusNames=Nmar_1232 {ECO:0000313|EMBL:ABX13128.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13128.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13128.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13128.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13128.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1232; -. DR EnsemblBacteria; ABX13128; ABX13128; Nmar_1232. DR KEGG; nmr:Nmar_1232; -. DR eggNOG; arCOG08718; Archaea. DR eggNOG; ENOG41110NS; LUCA. DR HOGENOM; HOG000107635; -. DR OMA; HELIHMR; -. DR BioCyc; NMAR436308:GI3J-1265-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 125 AA; 14697 MW; AD3C648C229DCB2B CRC64; MKLDPELKLQ ILEKVGIYSN RFSIPEPTIL LTTKEVLDAP KEMTEGRRTS AYKYYGVSYL QHNLVFINVR KIPDEKTLEN TIVHELIHMR FPYLAHGKRF NKLVRQGLRG KSFLPYRKRT KAHAI // ID A9A2J3_NITMS Unreviewed; 247 AA. AC A9A2J3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13232.1}; GN OrderedLocusNames=Nmar_1336 {ECO:0000313|EMBL:ABX13232.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13232.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13232.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13232.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13232.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1336; -. DR EnsemblBacteria; ABX13232; ABX13232; Nmar_1336. DR KEGG; nmr:Nmar_1336; -. DR eggNOG; arCOG01766; Archaea. DR eggNOG; COG2430; LUCA. DR KO; K09149; -. DR OMA; SMEINDE; -. DR BioCyc; NMAR436308:GI3J-1370-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007366; DUF432. DR Pfam; PF04254; DUF432; 1. DR PIRSF; PIRSF019202; UCP019202; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 247 AA; 27733 MW; 3238F0EE9BA514C7 CRC64; MHSLMKYQSE FDYANFGTHD VDEPLSLTFA NNEIQISKTN TNQFQYMRIS SDSHIRHALD VGDDVKIHIC PMLPLNVPEP ITSLLYLDLQ NPILVGKSVS AEISLKCPIE IGVFAKTPKE DVLVDSFSCD PLLSKFALYG LPTDGDFCKY SKIDDKEKIK PYHHAVVNVK IKNNLDHAVK VGKIVFDASS QNVYYSNNKI IVDSISMEIN DEKHATLTVS PCSDNLEKSL RTVPEKSQPF VMDSGYD // ID A9A5D3_NITMS Unreviewed; 129 AA. AC A9A5D3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 51. DE RecName: Full=Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; DE AltName: Full=GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GN Name=pfdB {ECO:0000256|HAMAP-Rule:MF_00307}; GN OrderedLocusNames=Nmar_0436 {ECO:0000313|EMBL:ABX12332.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12332.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12332.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12332.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Molecular chaperone capable of stabilizing a range of CC proteins. Seems to fulfill an ATP-independent, HSP70-like function CC in archaeal de novo protein folding. {ECO:0000256|HAMAP- CC Rule:MF_00307}. CC -!- SUBUNIT: Heterohexamer of two alpha and four beta subunits. CC {ECO:0000256|HAMAP-Rule:MF_00307}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00307}. CC -!- SIMILARITY: Belongs to the prefoldin subunit beta family. CC {ECO:0000256|HAMAP-Rule:MF_00307}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12332.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5D3; -. DR STRING; 436308.Nmar_0436; -. DR EnsemblBacteria; ABX12332; ABX12332; Nmar_0436. DR KEGG; nmr:Nmar_0436; -. DR eggNOG; arCOG01342; Archaea. DR eggNOG; COG1382; LUCA. DR HOGENOM; HOG000223201; -. DR KO; K04798; -. DR OMA; PPQVQAM; -. DR BioCyc; NMAR436308:GI3J-454-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0016272; C:prefoldin complex; IEA:UniProtKB-HAMAP. DR GO; GO:0006457; P:protein folding; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.370; -; 1. DR HAMAP; MF_00307; PfdB; 1. DR InterPro; IPR002777; PFD_beta-like. DR InterPro; IPR012713; PfdB. DR InterPro; IPR009053; Prefoldin. DR Pfam; PF01920; Prefoldin_2; 1. DR SUPFAM; SSF46579; SSF46579; 1. DR TIGRFAMs; TIGR02338; gimC_beta; 1. PE 3: Inferred from homology; KW Chaperone {ECO:0000256|HAMAP-Rule:MF_00307}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00307}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 10 51 {ECO:0000256|SAM:Coils}. FT COILED 66 108 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 129 AA; 14816 MW; 141D1AC6ED864955 CRC64; MSAGQMPPWL QEQLMKLQQS QQNLQSIMTQ KQHLEMEKAE TEKALEELKK VGDADAVYKQ AGTVLLKSTK KELVDELEEK QEMAKTRATV LEKQETRVKE TLKEQESKIT EMMKSGSQEP PKAEDNPRK // ID A9A1X9_NITMS Unreviewed; 147 AA. AC A9A1X9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12100.1}; GN OrderedLocusNames=Nmar_0204 {ECO:0000313|EMBL:ABX12100.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12100.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12100.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12100.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12100.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0204; -. DR EnsemblBacteria; ABX12100; ABX12100; Nmar_0204. DR KEGG; nmr:Nmar_0204; -. DR eggNOG; arCOG10529; Archaea. DR eggNOG; ENOG41110VA; LUCA. DR HOGENOM; HOG000023851; -. DR OMA; YTIARWA; -. DR BioCyc; NMAR436308:GI3J-208-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 42 60 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 103 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 115 137 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 147 AA; 16799 MW; 086FA3B5686AD356 CRC64; MLQEYLKLNK NILIAFAASI TISAVIAQIL SDQADYLNTT YTTIADYAIY FSVFSGLFYL DNRKKYRLEN GETDTIKLKH DLKKLIASLG IAEIIYTIAR WALQYYLLTI NYDPYLASII SQGISTIIYM IVVNLSVKIT RLYKDGN // ID A9A5B5_NITMS Unreviewed; 189 AA. AC A9A5B5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12314.1}; GN OrderedLocusNames=Nmar_0418 {ECO:0000313|EMBL:ABX12314.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12314.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12314.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12314.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12314.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0418; -. DR EnsemblBacteria; ABX12314; ABX12314; Nmar_0418. DR KEGG; nmr:Nmar_0418; -. DR eggNOG; arCOG04033; Archaea. DR eggNOG; ENOG4112CH7; LUCA. DR HOGENOM; HOG000105815; -. DR OMA; KPWEMHV; -. DR BioCyc; NMAR436308:GI3J-436-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 163 182 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 189 AA; 22164 MW; 81B90C7E52FB5D45 CRC64; MSTKILEYLT TYPKTVSFLD GLKHKIDVDN KEGVEQLHVV VKKSFEEMLK IFTEEGFTKV KFEHKQPDQI GHGLNLKLKK PWEMHVRMVD LKKGLIGIHA EVEVSRDYLQ HLFSQRTPVV YEVEEILKKY QVEYSIWHDK IKKNVHAIVD NYKVKLATPA LPVFAWKPML FVIGTVAAFY GWKYFNTIL // ID A9A5Q8_NITMS Unreviewed; 161 AA. AC A9A5Q8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13063.1}; GN OrderedLocusNames=Nmar_1167 {ECO:0000313|EMBL:ABX13063.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13063.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13063.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13063.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13063.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1167; -. DR EnsemblBacteria; ABX13063; ABX13063; Nmar_1167. DR KEGG; nmr:Nmar_1167; -. DR eggNOG; ENOG4102U9U; Archaea. DR eggNOG; ENOG4110ZJY; LUCA. DR BioCyc; NMAR436308:GI3J-1199-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 161 AA; 18469 MW; 572EF163961A25E0 CRC64; MRGEFQMNSD VLANDSVDDQ FCQMCGKSST KNPLSKVTAD DSEEKELVMC NTCICLRNLS LLCVSESEKI RKDTGYETEI QINRRKEVRF RLYAYQQISE SENLRVEEHD LINSAAEKIN ISPITARRYL DKICSSAGVL KRVDDGDSVY VEYSLKKEDF Q // ID A9A1D8_NITMS Unreviewed; 110 AA. AC A9A1D8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 41. DE SubName: Full=Putative transcriptional regulator {ECO:0000313|EMBL:ABX12773.1}; GN OrderedLocusNames=Nmar_0877 {ECO:0000313|EMBL:ABX12773.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12773.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12773.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12773.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12773.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0877; -. DR EnsemblBacteria; ABX12773; ABX12773; Nmar_0877. DR KEGG; nmr:Nmar_0877; -. DR eggNOG; arCOG03067; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000108357; -. DR OMA; IEVEKWM; -. DR BioCyc; NMAR436308:GI3J-905-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF12840; HTH_20; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 73 WHTH_DNA-bd_dom. FT {ECO:0000259|Pfam:PF12840}. SQ SEQUENCE 110 AA; 12589 MW; E09D295AF8C2F719 CRC64; MSRKLTLPQL KKYDITQKVI EALADSESRA ILFSIIRKGN TAAELSDKLK IPLSSVYKKL ADLEELTLIE VEKWMLSDKG RKYKVYRSRI SKADISIKKP EPVLTLLPNK // ID A9A266_NITMS Unreviewed; 241 AA. AC A9A266; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12479.1}; GN OrderedLocusNames=Nmar_0583 {ECO:0000313|EMBL:ABX12479.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12479.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12479.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12479.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12479.1; -; Genomic_DNA. DR ProteinModelPortal; A9A266; -. DR STRING; 436308.Nmar_0583; -. DR EnsemblBacteria; ABX12479; ABX12479; Nmar_0583. DR KEGG; nmr:Nmar_0583; -. DR eggNOG; arCOG00347; Archaea. DR eggNOG; COG1938; LUCA. DR KO; K06869; -. DR OMA; ETECCTI; -. DR BioCyc; NMAR436308:GI3J-606-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR019151; Proteasome_assmbl_chaperone_2. DR Pfam; PF09754; PAC2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 21 42 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 241 AA; 26842 MW; B622BD5D39446B29 CRC64; MPKEFPEAEV FEIKKRELKS PVIFAGFVGA GLVGPVAINH IIEKLEMDEI AVMRSKHLPP STVFMRGRLR HPFRFYANKE GTICAIICEI TLRMEGLYSL VASILDWAAA KGSKEIVILD GVASTEHDDK AYCAAEEDLV RTMADKDISM IPQGFITGIP GGILNECLVR EIQGLTLLAK ASRDTTDSGA AATLIEALNR FYDTDIDTTD LQEEKDRIHS EFSELSQKYV EHREEIAGMY M // ID A9A477_NITMS Unreviewed; 330 AA. AC A9A477; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ABX12566.1}; GN OrderedLocusNames=Nmar_0670 {ECO:0000313|EMBL:ABX12566.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12566.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12566.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12566.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12566.1; -; Genomic_DNA. DR ProteinModelPortal; A9A477; -. DR STRING; 436308.Nmar_0670; -. DR EnsemblBacteria; ABX12566; ABX12566; Nmar_0670. DR KEGG; nmr:Nmar_0670; -. DR eggNOG; arCOG01430; Archaea. DR eggNOG; COG0031; LUCA. DR HOGENOM; HOG000217394; -. DR KO; K12339; -. DR OMA; CEATDGA; -. DR BioCyc; NMAR436308:GI3J-695-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR Pfam; PF00291; PALP; 1. DR SUPFAM; SSF53686; SSF53686; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 287 PALP. {ECO:0000259|Pfam:PF00291}. SQ SEQUENCE 330 AA; 36220 MW; B6887AB464056C6A CRC64; MTTVTDTDVL NRVGNTPLVK LDSLSHDNVD YFAKLEGHNP FGSVKDRAAY WMIKDGEEKG ILTKGKSIII EPTSGNTGIA LTGIANLLGY KVEIVIPEKA SNETKDIIRN LGAKVFETSD DLCPKVGAGT DQSIALATSI ASSRPDTYYS PNQYANEANF KGHYIGTGPE IWRQTEGKVT HFFTGVGTGG TITGIGAFLK EKNPDVKIIG CQPQQNHLIQ GWRNFEESAK PDLFLKRENV VDDWVSVDND EAFSVVKDVF EKDQLLISPS SAAVYACMKK YPIEGDACVV GIFADDGRKF KSVYAKQNVM PEESFENCLK DAKHMSELAY // ID A9A4H1_NITMS Unreviewed; 605 AA. AC A9A4H1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=CBS domain containing protein {ECO:0000313|EMBL:ABX12660.1}; GN OrderedLocusNames=Nmar_0764 {ECO:0000313|EMBL:ABX12660.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12660.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12660.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12660.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12660.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4H1; -. DR STRING; 436308.Nmar_0764; -. DR EnsemblBacteria; ABX12660; ABX12660; Nmar_0764. DR KEGG; nmr:Nmar_0764; -. DR eggNOG; arCOG00606; Archaea. DR eggNOG; arCOG04145; Archaea. DR eggNOG; ENOG410XT54; LUCA. DR HOGENOM; HOG000107489; -. DR KO; K03498; -. DR OMA; ATCTGFQ; -. DR BioCyc; NMAR436308:GI3J-790-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0008324; F:cation transmembrane transporter activity; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR003445; Cat_transpt. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 2. DR Pfam; PF02386; TrkH; 1. DR SMART; SM00116; CBS; 2. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 155 176 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 188 207 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 219 238 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 286 305 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 326 348 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 385 406 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 418 438 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 467 492 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 520 542 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 580 601 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 21 79 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 87 143 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 605 AA; 66182 MW; 42A0A990416D07A2 CRC64; MSTNPERAVS YVLNKSVTEY MDKDVLILSQ NTLTREATRM LQHYETDDII VTNEDRVPVG IVTDEDILSK VSDVTVYAEA TKLKDIMTTP LVTINEKATL QDALHKMRDN SIRKLPVLSK KNQVIGMIFQ TTIANVIRDA TASEPRLLSP PVKAVLGNLG FVLQFAGVLL LVPAIISTIL ENTLTATGIY LTTVLLLVTG FFLNSYGEKS SLNLQQASIL VFSSLFLLSL FGTVPYLYVF PSEETNVEVF GNAFFSSAAG FTTGGISLFD TPEEQLTQSF TFYRSYTQLV GGMSFIYLVI TAFYPESKLQ SMRGFISGRT LHMKELFSTI TVIFAVYIVI VAILLYFFGQ ENLLDDFSLA MSTLATGGFV PSSTIIENLG WQEEVILMGA MILGALPFTF HYAFVRKKFL APKLGKEVLT YFAILGGATI LFISISGLDP LDSAFYSVSA STTAGLQLQS LAGLGGFAHA ILITLMFIGG CGFSTAGGLK IFRLFHLRNC RSFFSSVRRK ELSTQTKKEI TSTLIIIALF PVISAITGLH LAETEDVSYQ DAFFEAAGVI TTGGLSAGVI DSDTDPATKI VLGFLMIFGR LEIIAIIYIF VPRLS // ID A9A4H8_NITMS Unreviewed; 97 AA. AC A9A4H8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12956.1}; GN OrderedLocusNames=Nmar_1060 {ECO:0000313|EMBL:ABX12956.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12956.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12956.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12956.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12956.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1060; -. DR EnsemblBacteria; ABX12956; ABX12956; Nmar_1060. DR KEGG; nmr:Nmar_1060; -. DR eggNOG; arCOG10572; Archaea. DR eggNOG; ENOG4110ZZ9; LUCA. DR BioCyc; NMAR436308:GI3J-1091-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 97 AA; 11804 MW; 278BB9E5867CCC0C CRC64; MEEPDEIQKL IDEISFRKAN SKDYKNMKVE EISKELKDVM EFERESFKKI EEFEKTQDNP DLIQYAKMIC KNTTQREITQ IQEVYLEKID EEYIKSK // ID A9A5U8_NITMS Unreviewed; 577 AA. AC A9A5U8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX13103.1}; GN OrderedLocusNames=Nmar_1207 {ECO:0000313|EMBL:ABX13103.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13103.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13103.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13103.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13103.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5U8; -. DR EnsemblBacteria; ABX13103; ABX13103; Nmar_1207. DR KEGG; nmr:Nmar_1207; -. DR eggNOG; arCOG02358; Archaea. DR eggNOG; arCOG02363; Archaea. DR eggNOG; ENOG410XQA6; LUCA. DR OMA; ITHQIDE; -. DR BioCyc; NMAR436308:GI3J-1240-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:InterPro. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF00672; HAMP; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00304; HAMP; 1. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50885; HAMP; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13103.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13103.1}. FT DOMAIN 294 346 HAMP. {ECO:0000259|PROSITE:PS50885}. FT DOMAIN 372 574 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 577 AA; 65660 MW; 731BCAC1FA860A99 CRC64; MILDIDQYIK NRIDDFKTIT TVEEVRSSIV KSNDMFRNIS DIEEFLDSKE QTTDSEFRFL TEVNLEDASE ELAELIIFYE ESFGHNIIDE LFITNEYGAS IALGTGTSDY RQDDEEWWQL TKRDGMYIGK LEYNDNYEEF SIPFGMRIVD DEGNFVGVMR VALSLDDILS DLVDDHEILQ QTGTRSVFLV DESGKILYPG TEQDSSIQKT IEYFPQISKN RDTFEIKNNL GEPILVSYST SIGFEDFRGF GWTIIIEQAE HQLLDDFSEI RETVIIASVI GLISALIISI LISRSITNPL SYLVDVARNI AQGNFDVKLQ KHQISEIKTI EKSFEKMSVD LKNLVETEKE LAETRAKVKN ERFAAMGELS ANVAHDLKNP LASIKSATNI IKQNSNNMDP KLKELVFPKM DRAISRITHQ IDEVLNYVRI TPINLIEVSI QKIITSSFES LSIPNNVEIV KPDIDFTVKC DVEKLEIVFI NLILNAIQAF EEKQGRIKIN LIDDKKQKTI EFENDGPAIP GDILQDIFKP LFTTKQKGTG LGLAISKNVI EQHGWQITVK NNPVTFSIIV PKHIQNS // ID A9A252_NITMS Unreviewed; 141 AA. AC A9A252; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12465.1}; GN OrderedLocusNames=Nmar_0569 {ECO:0000313|EMBL:ABX12465.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12465.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12465.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12465.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12465.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0569; -. DR EnsemblBacteria; ABX12465; ABX12465; Nmar_0569. DR KEGG; nmr:Nmar_0569; -. DR eggNOG; arCOG10529; Archaea. DR eggNOG; ENOG41110VA; LUCA. DR HOGENOM; HOG000023851; -. DR BioCyc; NMAR436308:GI3J-592-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 60 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 80 101 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 113 135 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 141 AA; 16386 MW; 14E35ED8BCDD2625 CRC64; MKLNQQLLRI NRSFLICFVI SASLSAVFAQ MLSGYDNYLN TTFTIIFGYV VYFGIFSGLF YWDNKDRYKS MKRELIKKEL LALISSFGVG EIVYLGIRWP TFYYFLEIGI EPFIASLISE MIATACYMAS VTLFLRKTKT Y // ID A9A558_NITMS Unreviewed; 953 AA. AC A9A558; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11967.1}; GN OrderedLocusNames=Nmar_0067 {ECO:0000313|EMBL:ABX11967.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11967.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11967.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11967.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11967.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0067; -. DR EnsemblBacteria; ABX11967; ABX11967; Nmar_0067. DR KEGG; nmr:Nmar_0067; -. DR eggNOG; arCOG06128; Archaea. DR eggNOG; COG1615; LUCA. DR HOGENOM; HOG000110676; -. DR KO; K09118; -. DR OMA; TFIQANE; -. DR BioCyc; NMAR436308:GI3J-67-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR005372; UPF0182. DR Pfam; PF03699; UPF0182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 38 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 59 79 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 122 150 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 185 210 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 231 251 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 263 283 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 299 319 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 953 AA; 107415 MW; DB5ECA805070ADC4 CRC64; MILYSASTDK QTPPPDAGKY IRLGIIAIIG IVIFAIVGNQ AVILSMNFTE FGDQFTKPLY YTLVSTIILA AIALVRVNIA GRSSIFWYAI NTAIGFLGRS GQQPITNAVP SFRDYKLSSG QFILWQITKI FLFGAFFANI MFGFAAMSFI DGNYLGIENL PKLFSLPFVT PETDPNYAAE NVVPMIPALV ILIPPILAAI GLRLVLYVGL HRIINVITSF LQDSNEGKPR YLNYVSTIEG IIGIGILWAG FNLFFTDQID YNTRYVIGGT LVIGSALIAF SVVDRIRARV LTHMFKRDVY IRILTIIAIA IIIAGVVSVN NSIADAKKIE FLGPYTAQQI GVNRYLGELN NIQENTHDVQ LTSVSPNNIK NYVSQNSDVL DVIRVWDWEA AFAKLKPEIG LIPYVDFEDN DILRFNNTLY WTASMKPILP TSVSLENRWY NEHFVYTHVP EGFLTLEATD GQIVDSEQFF KQREIYYGEG GLFEQTWSGY PNSRGSESAE LGGVSYSGLG GLDVSPPLSW IFEPNFLLSF PGESVHIMRY KDVHDRMQTL YPYFLYDLFG KELDSLPVTD GENSYWLIPL IIGFDTRDVP WSVGNPYLRL VGYALVDSYD GDIQLLKTGD DFFTEMFASQ YEEQFQPMPA WLEEQIRYPV ELFNWKTEMY NVYHVTNVET FIQANEFYEI PRGLDTYYVE AKPPGFDQTE FLGLLSLELR GSEGRNLAGY MVVENDLTNL GDLQFYEVPL DSETKLIGPT AVREALDRDP EFAQLKTLLR NPRIGDNILY RVGAHDVYFI PVYTAGAGGV VAQLGTIAAV GAAFNGEYFV GLGDTQEQAF EAYLKKVSGV AGSITVADEN YVELDRNDRI EIIKKVFEEN EITISEPTSI QIPLSFNEGE LFFFTENERE ETVEFLSQFI DDFVKPRSDR VFMWQEENNL NIGTIYVKDG ISEIHYVSIE VGS // ID A9A1G4_NITMS Unreviewed; 546 AA. AC A9A1G4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX13143.1}; GN OrderedLocusNames=Nmar_1247 {ECO:0000313|EMBL:ABX13143.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13143.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13143.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13143.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13143.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G4; -. DR STRING; 436308.Nmar_1247; -. DR EnsemblBacteria; ABX13143; ABX13143; Nmar_1247. DR KEGG; nmr:Nmar_1247; -. DR eggNOG; arCOG02358; Archaea. DR eggNOG; arCOG03644; Archaea. DR eggNOG; ENOG410XQA6; LUCA. DR KO; K07709; -. DR OMA; NSHYENI; -. DR BioCyc; NMAR436308:GI3J-1280-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR029151; Sensor-like. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF103190; SSF103190; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX13143.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13143.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 341 542 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 546 AA; 61841 MW; 8A6CE80484D304F5 CRC64; MALGKNKILW GLLGLIIISV IVTGFYINDF TKTNIRESLI EEKTEIQMIM TKSLAASVNS EFQRLLTDMK TISESAQVQE SLTSSQTQEY LSNRWNNINS ITKISDIFLT DDSLTIVSQV NDEKFRLVGL NLQNIQSSEE FKAKPGYSGE IFSTDGIYRV LVSSPIIDSE SGEFKGIVFG IVEPSEIISK YIGIYEIDIS SITIFDENQK ILFAENTDLL GKEFSSYFAQ RYFGENEIQN SHYENIFLGN TDSFVYEAHR FGDVISTGTP VSIEEKNRFF FFVTTPVNQI VEDIEDNLFV EDLKNNLILF IITILFIVIV IKRVRSIENE KLLVIGQLAS NIAHDIRNPL GTIRSSVTRI EKQNETINET INQETERIKR SVARMNHQVE SVLNYVRTTP LNLSENSLND LIQSSINSLV IPKNIELNIP KEDIKFECDS DKFKVVFENL LLNAVQSIDS KEGKISINSN QNEKEITISF ENSGPNITEE NISKIFRPLF TSKLKGTGLG LSSCQNIITQ HQGTILVTNN PVTFTIKIPK NLRKEK // ID A9A4F4_NITMS Unreviewed; 317 AA. AC A9A4F4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12643.1}; GN OrderedLocusNames=Nmar_0747 {ECO:0000313|EMBL:ABX12643.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12643.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12643.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12643.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12643.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4F4; -. DR STRING; 436308.Nmar_0747; -. DR EnsemblBacteria; ABX12643; ABX12643; Nmar_0747. DR KEGG; nmr:Nmar_0747; -. DR eggNOG; arCOG00059; Archaea. DR eggNOG; ENOG4111HW6; LUCA. DR HOGENOM; HOG000107511; -. DR OMA; VNTIDAF; -. DR BioCyc; NMAR436308:GI3J-773-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 317 AA; 35847 MW; 1C6A5BB00094EC1C CRC64; MIRIGFLIYA ENSFNFVNTI DAFEKDIHLQ VDFLKSFKKQ KPISKSLQKN TIFTGSGDSL ISSMLAESFS EGMVHAMDPL DLYKNKHLVK SKRVYFVSIS GNTITNIKVA KLTKKSIAIT SKSDSRLAKA SDDVILLDAP TNHVFTAGSI TFLESALTCI SLVKPLSISK SEEVFKKAKF DAKKSNLSKK VYVLGNLLTF PIAMFCAAKF YEVLGYDVHY SRIEQFSHME LFSAKRSDTV IIFEEKNTHN RQLAKNLARV GINVIHPNLP SGKIPQLLYC IFFSEFLALY EAKKKHKKDC HFVTAKKIRN VSNQMIY // ID A9A519_NITMS Unreviewed; 183 AA. AC A9A519; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11928.1}; GN OrderedLocusNames=Nmar_0028 {ECO:0000313|EMBL:ABX11928.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11928.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11928.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11928.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11928.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0028; -. DR EnsemblBacteria; ABX11928; ABX11928; Nmar_0028. DR KEGG; nmr:Nmar_0028; -. DR BioCyc; NMAR436308:GI3J-28-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 183 AA; 21836 MW; E39D72429A5256EA CRC64; MSEPFGFDLP DNSKELTDKE YVNLVNRIRG NFLSYVSVLD STLTVIISDL FLRDKNDFPL WAKTVFDEDR TASFGTKIVW ISRIMKNHQE FKKEIEEKTR IKIQQKLNEI REIRNDFAHN FAQNKKIESE NIKNRIIKLY DFEEGMTTPK LFKMEEIMDL INDPWILEQL EKIEALTKKI REN // ID A9A5Z2_NITMS Unreviewed; 118 AA. AC A9A5Z2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13470.1}; GN OrderedLocusNames=Nmar_1574 {ECO:0000313|EMBL:ABX13470.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13470.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13470.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13470.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13470.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1574; -. DR EnsemblBacteria; ABX13470; ABX13470; Nmar_1574. DR KEGG; nmr:Nmar_1574; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000106406; -. DR OMA; TEVDANV; -. DR BioCyc; NMAR436308:GI3J-1618-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 118 AA; 13578 MW; 7B866F2D9B4029B8 CRC64; MEYEKICDEI LGCDKKIRYV GVYDYGELHD KMRPGVESFL SREETELSLS QAVYRWSTRK KTSDKIGKPE FALAKYEKIY RVTVPVGGAG LILFSTEVDA NVNEIIDKVI EIKNKYSE // ID A9A2Y9_NITMS Unreviewed; 78 AA. AC A9A2Y9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 45. DE SubName: Full=Like-Sm ribonucleoprotein core {ECO:0000313|EMBL:ABX12117.1}; GN OrderedLocusNames=Nmar_0221 {ECO:0000313|EMBL:ABX12117.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12117.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12117.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12117.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12117.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Y9; -. DR SMR; A9A2Y9; 4-73. DR STRING; 436308.Nmar_0221; -. DR EnsemblBacteria; ABX12117; ABX12117; Nmar_0221. DR KEGG; nmr:Nmar_0221; -. DR eggNOG; arCOG00998; Archaea. DR eggNOG; COG1958; LUCA. DR HOGENOM; HOG000223550; -. DR KO; K04796; -. DR OMA; GNVYKRG; -. DR BioCyc; NMAR436308:GI3J-226-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030529; C:intracellular ribonucleoprotein complex; IEA:UniProtKB-KW. DR GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR001163; LSM_dom_euk/arc. DR Pfam; PF01423; LSM; 1. DR SMART; SM00651; Sm; 1. DR SUPFAM; SSF50182; SSF50182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12117.1}; KW Viral nucleoprotein {ECO:0000313|EMBL:ABX12117.1}; KW Virion {ECO:0000313|EMBL:ABX12117.1}. FT DOMAIN 8 73 Sm. {ECO:0000259|SMART:SM00651}. SQ SEQUENCE 78 AA; 8370 MW; ADA249B28D9DB6DE CRC64; MSVDMAVKVL DESINQIVLI KLKGNKTIRG NLLGFDQHMN LLLDSSEEIP AEGEAKGLGS IVVRGDNVVM ISPPPAQN // ID A9A426_NITMS Unreviewed; 247 AA. AC A9A426; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:ABX12210.1}; GN OrderedLocusNames=Nmar_0314 {ECO:0000313|EMBL:ABX12210.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12210.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12210.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12210.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12210.1; -; Genomic_DNA. DR ProteinModelPortal; A9A426; -. DR STRING; 436308.Nmar_0314; -. DR EnsemblBacteria; ABX12210; ABX12210; Nmar_0314. DR KEGG; nmr:Nmar_0314; -. DR eggNOG; arCOG00860; Archaea. DR eggNOG; COG1608; LUCA. DR HOGENOM; HOG000225249; -. DR KO; K06981; -. DR OMA; IGTRISP; -. DR BioCyc; NMAR436308:GI3J-328-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016301; F:kinase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.1160.10; -; 1. DR InterPro; IPR001048; Asp/Glu/Uridylate_kinase. DR InterPro; IPR024192; Fosfomycin_R_FomA-type. DR Pfam; PF00696; AA_kinase; 1. DR PIRSF; PIRSF016496; Kin_FomA; 1. DR SUPFAM; SSF53633; SSF53633; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|PIRSR:PIRSR016496-1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12210.1}; KW Nucleotide-binding {ECO:0000256|PIRSR:PIRSR016496-1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12210.1}. FT DOMAIN 2 223 AA_kinase. {ECO:0000259|Pfam:PF00696}. FT NP_BIND 5 9 ATP. {ECO:0000256|PIRSR:PIRSR016496-1}. FT BINDING 45 45 Substrate; via amide nitrogen. FT {ECO:0000256|PIRSR:PIRSR016496-1}. FT BINDING 46 46 ATP; via amide nitrogen. FT {ECO:0000256|PIRSR:PIRSR016496-1}. FT BINDING 50 50 Substrate. FT {ECO:0000256|PIRSR:PIRSR016496-1}. FT BINDING 146 146 Substrate; via amide nitrogen. FT {ECO:0000256|PIRSR:PIRSR016496-1}. FT BINDING 201 201 ATP; via carbonyl oxygen. FT {ECO:0000256|PIRSR:PIRSR016496-1}. FT BINDING 205 205 ATP. {ECO:0000256|PIRSR:PIRSR016496-1}. FT SITE 14 14 Transition state stabilizer. FT {ECO:0000256|PIRSR:PIRSR016496-2}. SQ SEQUENCE 247 AA; 27953 MW; 0A5BA9E3A9620E75 CRC64; MILIKLGGSI ITNKEKPLSA RRKTIDNLAK SLKKIQEPII IVHGGGSYGH YWSVKYDMHT KERKYDLRGV SIVKNSMIEL NKIILDSFLK NKLKPYCLPP TDFMTGNKPI PKKVKEIEKI SKSGLIPVTF GDALWYGQNK TFILSGDKIM THLAKILKPK LCIFALNEDG VYSDLKSKKL IHELKGERPS ISENKMDVTG GMTRKIEEAS KISKMGMNVF FVNGNKPERI VKAVKNRKFE GTLFRGK // ID A9A219_NITMS Unreviewed; 186 AA. AC A9A219; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12432.1}; GN OrderedLocusNames=Nmar_0536 {ECO:0000313|EMBL:ABX12432.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12432.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12432.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12432.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12432.1; -; Genomic_DNA. DR ProteinModelPortal; A9A219; -. DR STRING; 436308.Nmar_0536; -. DR EnsemblBacteria; ABX12432; ABX12432; Nmar_0536. DR KEGG; nmr:Nmar_0536; -. DR eggNOG; arCOG03705; Archaea. DR eggNOG; COG1547; LUCA. DR HOGENOM; HOG000106293; -. DR KO; K09763; -. DR OMA; RIERFTI; -. DR BioCyc; NMAR436308:GI3J-558-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.3450.10; -; 1. DR InterPro; IPR005500; DUF309. DR InterPro; IPR023203; TTHA0068_dom. DR Pfam; PF03745; DUF309; 1. DR SUPFAM; SSF140663; SSF140663; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 186 AA; 21570 MW; 341E880FA1F22000 CRC64; MERYMLHLKN TRYGPENSRE VVYKARDLAS DMNASIRVAR IAKKFVELDV SVEKDDLDKL IEKLSPIGPI DNIRHVFEEE IDKEKGITDG IFYFNNERFW ESHEAFEGVW KKCFGREKEV VQGIILMAVA FAHAQKDELS IGIGMLRRVL EKLGTSPSTY HSIDVDMIRT KAIEMQQENK LTTFEI // ID A9A5S7_NITMS Unreviewed; 252 AA. AC A9A5S7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13082.1}; GN OrderedLocusNames=Nmar_1186 {ECO:0000313|EMBL:ABX13082.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13082.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13082.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13082.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13082.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1186; -. DR EnsemblBacteria; ABX13082; ABX13082; Nmar_1186. DR KEGG; nmr:Nmar_1186; -. DR eggNOG; arCOG08642; Archaea. DR eggNOG; ENOG41111NR; LUCA. DR OMA; IFASIMP; -. DR BioCyc; NMAR436308:GI3J-1219-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR021834; DUF3426. DR Pfam; PF11906; DUF3426; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 216 234 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 252 AA; 27825 MW; 921F47A8F51837A6 CRC64; MEKILIVGII FASIMPFAFA DVYIQNDQQY IGDDGSIHIV GEIVNNLDIP LNQIHVQIDL FDENQQLIQT KETNSLVNTI MPGMKGPFDL ILTNGEAKNV NSYSMELNYQ ASPPKSQVID ITESSLSRDN HNNLMITGTV ANNGEITANM VSVIATLYDK QGNVAAVSRV NPEPDYLRAE DSAFFVLSVP DKIQTEEIND YTLIAESEEY AAVPEFPIST IILLILTLSA YIGVTRYSGK IITNLFSATN LK // ID A9A5M5_NITMS Unreviewed; 102 AA. AC A9A5M5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12736.1}; GN OrderedLocusNames=Nmar_0840 {ECO:0000313|EMBL:ABX12736.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12736.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12736.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12736.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12736.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0840; -. DR EnsemblBacteria; ABX12736; ABX12736; Nmar_0840. DR KEGG; nmr:Nmar_0840; -. DR eggNOG; arCOG01285; Archaea. DR eggNOG; COG1545; LUCA. DR KO; K07068; -. DR BioCyc; NMAR436308:GI3J-867-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR012340; NA-bd_OB-fold. DR SUPFAM; SSF50249; SSF50249; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 102 AA; 11815 MW; B54B40E226A15A12 CRC64; MIFEEEISKG NFSIPECTIC KKIVWPPIEF CDTCMGKTSL KKGDFQGKII EFSKQNEDYF CIVEIEDSFR IMAKMSKEPE IDQIVKISKC GMNEGNYFFE VS // ID A9A3S5_NITMS Unreviewed; 333 AA. AC A9A3S5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13337.1}; GN OrderedLocusNames=Nmar_1441 {ECO:0000313|EMBL:ABX13337.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13337.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13337.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13337.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13337.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1441; -. DR EnsemblBacteria; ABX13337; ABX13337; Nmar_1441. DR KEGG; nmr:Nmar_1441; -. DR BioCyc; NMAR436308:GI3J-1476-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 162 182 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 229 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 249 273 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 280 296 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 308 328 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 333 AA; 37105 MW; 63D4371CEA3CBA6A CRC64; MKTKLLVIFG LVLLLHPAIA SSQVFGQIQM IEIGFDETID FDGIQIHFSD VDTSRCPVDG ECSREQVTVI IEMDRGTLYT TSYMTLEKST SYVKQYEIRV MDIQPWPPHT EKSEYVAILE IAPTPTPEDE LACGKGNYLI DGVCHPGKQT GLTDEQQLVS SLLYILLISI GAGINIGLIM LVTSNKRKTK NDNQNPHSLS SGNFIKEKHL RISAISVVIA FPILIMLYGM VTCNDTRCDP ASLFDIVKIY FYGFSGYFLS VGLLGIPIGL VALASGNLTM GYIAINVLPW IILTLTNRYA DKMSILRILY WWIIMNSVAF LTFMQAPFPI SPL // ID A9A4B2_NITMS Unreviewed; 283 AA. AC A9A4B2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Transcriptional regulator, TrmB {ECO:0000313|EMBL:ABX12601.1}; GN OrderedLocusNames=Nmar_0705 {ECO:0000313|EMBL:ABX12601.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12601.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12601.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12601.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12601.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4B2; -. DR STRING; 436308.Nmar_0705; -. DR EnsemblBacteria; ABX12601; ABX12601; Nmar_0705. DR KEGG; nmr:Nmar_0705; -. DR eggNOG; arCOG02037; Archaea. DR eggNOG; COG1378; LUCA. DR OMA; INEMMNT; -. DR BioCyc; NMAR436308:GI3J-730-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR002831; Tscrpt_reg_TrmB_N. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01978; TrmB; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 38 103 TrmB. {ECO:0000259|Pfam:PF01978}. FT COILED 105 132 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 283 AA; 32857 MW; 0F84C716ED1629B2 CRC64; MPRNGNMVTG MKSVIVEENQ DLSLDNIEKS FEKIQIELEK FGLSANQSKV YMFLGKYGTK TASEINQALK IPRTETYHIL STLQNKGIVS AMFGHPVKFT AIEITNAMTQ IINSEKQKIK KLENQKTSLI KLWETIPIRT NEEKVEEKFQ MLQGENQINS KINEMMNTQE EVLMIGNEKD FANFYHTNIL DNVNELKKFK ILTTSTKTNY VYENLNNDNI KVLPEQIANN LCFIVKDNEV LFYLKNNSKK ESTAMWTNSS AMNYSKKLLF EELWKKSMEF KNE // ID A9A4R2_NITMS Unreviewed; 181 AA. AC A9A4R2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13366.1}; GN OrderedLocusNames=Nmar_1470 {ECO:0000313|EMBL:ABX13366.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13366.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13366.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13366.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13366.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1470; -. DR EnsemblBacteria; ABX13366; ABX13366; Nmar_1470. DR KEGG; nmr:Nmar_1470; -. DR OMA; SAARMEY; -. DR BioCyc; NMAR436308:GI3J-1507-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR InterPro; IPR013324; RNA_pol_sigma_r3_r4. DR SUPFAM; SSF88659; SSF88659; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 181 AA; 21657 MW; 86607434AAAACFA4 CRC64; MAQVLEKKGG PYPKNKKIKR QNEVFRLHFD LGYSAVKISE MMNVNRNTVN GDIHYWYGIL SKEWESYDIE AWHMKQVHRL ESQRTRLFQE LEKTTETTVK LSIERMILDI DIKMTNFVSK SVYTQDWLRD RSVAWINKWA KENNSKYRLL DANAAWYTSE EITEKVRKLI HDGKIEKRGK I // ID A9A1U1_NITMS Unreviewed; 295 AA. AC A9A1U1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Sulfotransferase {ECO:0000313|EMBL:ABX12062.1}; GN OrderedLocusNames=Nmar_0166 {ECO:0000313|EMBL:ABX12062.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12062.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12062.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12062.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12062.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U1; -. DR STRING; 436308.Nmar_0166; -. DR EnsemblBacteria; ABX12062; ABX12062; Nmar_0166. DR KEGG; nmr:Nmar_0166; -. DR eggNOG; arCOG09746; Archaea. DR eggNOG; ENOG410YPGR; LUCA. DR HOGENOM; HOG000268763; -. DR OMA; AQRCGTT; -. DR BioCyc; NMAR436308:GI3J-167-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008146; F:sulfotransferase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000863; Sulfotransferase_dom. DR Pfam; PF00685; Sulfotransfer_1; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12062.1}. FT DOMAIN 30 274 Sulfotransfer_1. FT {ECO:0000259|Pfam:PF00685}. SQ SEQUENCE 295 AA; 34801 MW; 4EA53AD86437C049 CRC64; MLAATFSRMI RNVFFYSYRL ATSFFRMTPN FIIIGAPKCG TTSLYNYLIQ HPQILSSSRK EPMFFSMFYN KNPLWYKINF PIKFGHSKKI TGEASTSYLI YPNVPKLVKE MLPDVKIIIM LRNPIDRSFS QYTHHYRSGV ETLSFEEAIN EEEKRLQGTL EEIENSKPLK GFSYLKSLFF FNPSNILTFS NLFGGIYVDQ IKNWTDVFPS DQIKIVFSEE FFKDSDKIYQ DVLKFLELPS YKLMNYKAFN ADYKKNPSVS NPKMNIDTRK KLVEYFKPHN KRLSDFLNKP INWDS // ID A9A5F8_NITMS Unreviewed; 68 AA. AC A9A5F8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Sec-independent translocation protein mttA/Hcf106 {ECO:0000313|EMBL:ABX12669.1}; GN OrderedLocusNames=Nmar_0773 {ECO:0000313|EMBL:ABX12669.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12669.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12669.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12669.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12669.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0773; -. DR EnsemblBacteria; ABX12669; ABX12669; Nmar_0773. DR KEGG; nmr:Nmar_0773; -. DR eggNOG; arCOG02694; Archaea. DR eggNOG; COG1826; LUCA. DR HOGENOM; HOG000245365; -. DR KO; K03116; -. DR OMA; IAGQEWI; -. DR BioCyc; NMAR436308:GI3J-799-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008565; F:protein transporter activity; IEA:InterPro. DR InterPro; IPR003369; TatA/B/E. DR Pfam; PF02416; MttA_Hcf106; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 68 AA; 7607 MW; 134317D0F14179BE CRC64; MFGMNLANFI AGQEWIFIIV IAVVLIFGAK KIPELAKTFG KAKGEFEKGK IEGEKELKDF KDKEAKSD // ID A9A5N5_NITMS Unreviewed; 332 AA. AC A9A5N5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:ABX13040.1}; GN OrderedLocusNames=Nmar_1144 {ECO:0000313|EMBL:ABX13040.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13040.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13040.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13040.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13040.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N5; -. DR STRING; 436308.Nmar_1144; -. DR EnsemblBacteria; ABX13040; ABX13040; Nmar_1144. DR KEGG; nmr:Nmar_1144; -. DR eggNOG; arCOG02398; Archaea. DR eggNOG; COG0785; LUCA. DR KO; K06196; -. DR OMA; CTLPLVF; -. DR BioCyc; NMAR436308:GI3J-1176-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0017004; P:cytochrome complex assembly; IEA:InterPro. DR GO; GO:0055114; P:oxidation-reduction process; IEA:InterPro. DR InterPro; IPR003834; Cyt_c_assmbl_TM_dom. DR Pfam; PF02683; DsbD; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 44 72 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 84 108 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 120 142 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 163 190 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 228 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 240 258 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 305 321 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 52 253 DsbD. {ECO:0000259|Pfam:PF02683}. SQ SEQUENCE 332 AA; 35988 MW; CEB52B1388874664 CRC64; MSTVVIAKKS MVIISFALFS LIFLGIIFSL GTNFTIEGKE HTTYLSWIVI AYVAGLSMIV LPCTLPLVFI IVPLSMGQGY KKGLAMALLF GLGLVITIAS YGIAIAGIGQ SASLDQASTI MFLIAGIAAF VFGLSQLKII SLKLPSYSGT PKFIQNRGEY TKSFFMGLLL GNAGVGCPNP LFYWLLIYIA GTGSIEVGAS LGVVHGVGRA IPLILMSVLA VIGINATKSL TLKRESIERA SGWMLIVIGA FLIINGLPEG HEWYEELFIH QGWNQLVEMT GIPAEFEMDE HTHDHGHVEG RDFKVFYTAL LAVLVLSPLF IRSVRKIREV NA // ID A9A5M3_NITMS Unreviewed; 64 AA. AC A9A5M3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12734.1}; GN OrderedLocusNames=Nmar_0838 {ECO:0000313|EMBL:ABX12734.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12734.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12734.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12734.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12734.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12734; ABX12734; Nmar_0838. DR KEGG; nmr:Nmar_0838; -. DR BioCyc; NMAR436308:GI3J-865-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 64 AA; 7689 MW; 929D318591605D8F CRC64; MSEIIIEKLL EQRDFYLSTL KQLEFQRVMD PTENELKEIE KLQTTTVDQL KKVEQEIAYL NSQK // ID A9A118_NITMS Unreviewed; 450 AA. AC A9A118; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Cobyrinate a,c-diamide synthase {ECO:0000256|HAMAP-Rule:MF_00027}; DE EC=6.3.5.11 {ECO:0000256|HAMAP-Rule:MF_00027}; DE AltName: Full=Cobyrinic acid a,c-diamide synthetase {ECO:0000256|HAMAP-Rule:MF_00027}; GN Name=cbiA {ECO:0000256|HAMAP-Rule:MF_00027}; GN OrderedLocusNames=Nmar_0079 {ECO:0000313|EMBL:ABX11979.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11979.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11979.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11979.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the ATP-dependent amidation of the two CC carboxylate groups at positions a and c of cobyrinate, using CC either L-glutamine or ammonia as the nitrogen source. CC {ECO:0000256|HAMAP-Rule:MF_00027}. CC -!- CATALYTIC ACTIVITY: 2 ATP + cobyrinate + 2 L-glutamine + 2 H(2)O = CC 2 ADP + 2 phosphate + cobyrinate a,c-diamide + 2 L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_00027}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00027}; CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis; CC cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic CC route): step 10/10. {ECO:0000256|HAMAP-Rule:MF_00027}. CC -!- DOMAIN: Comprises of two domains. The C-terminal domain contains CC the binding site for glutamine and catalyzes the hydrolysis of CC this substrate to glutamate and ammonia. The N-terminal domain is CC anticipated to bind ATP and cobyrinate and catalyzes the ultimate CC synthesis of the diamide product. The ammonia produced via the CC glutaminase domain is probably translocated to the adjacent domain CC via a molecular tunnel, where it reacts with an activated CC intermediate. {ECO:0000256|HAMAP-Rule:MF_00027}. CC -!- MISCELLANEOUS: The a and c carboxylates of cobyrinate are CC activated for nucleophilic attack via formation of a CC phosphorylated intermediate by ATP. CbiA catalyzes first the CC amidation of the c-carboxylate, and then that of the a- CC carboxylate. {ECO:0000256|HAMAP-Rule:MF_00027}. CC -!- SIMILARITY: Belongs to the CobB/CbiA family. {ECO:0000256|HAMAP- CC Rule:MF_00027}. CC -!- SIMILARITY: Contains 1 GATase cobBQ-type domain. CC {ECO:0000256|HAMAP-Rule:MF_00027}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11979.1; -; Genomic_DNA. DR ProteinModelPortal; A9A118; -. DR STRING; 436308.Nmar_0079; -. DR EnsemblBacteria; ABX11979; ABX11979; Nmar_0079. DR KEGG; nmr:Nmar_0079; -. DR eggNOG; arCOG00106; Archaea. DR eggNOG; COG1797; LUCA. DR HOGENOM; HOG000289958; -. DR KO; K02224; -. DR OMA; CWLPGGY; -. DR BioCyc; NMAR436308:GI3J-80-MONOMER; -. DR UniPathway; UPA00148; UER00231. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0042242; F:cobyrinic acid a,c-diamide synthase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 2. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_00027; CobB_CbiA; 1. DR InterPro; IPR004484; CbiA_synth. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017929; CobB/CobQ_GATase. DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom. DR InterPro; IPR011698; GATase_3. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01656; CbiA; 1. DR Pfam; PF07685; GATase_3; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00379; cobB; 1. DR PROSITE; PS51274; GATASE_COBBQ; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00027}; KW Cobalamin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00027}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00027}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00027}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00027}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00027}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 245 436 GATase cobBQ-type. {ECO:0000256|HAMAP- FT Rule:MF_00027, FT ECO:0000259|PROSITE:PS51274}. FT ACT_SITE 327 327 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00027}. FT ACT_SITE 428 428 {ECO:0000256|HAMAP-Rule:MF_00027}. FT SITE 428 428 Increases nucleophilicity of active site FT Cys. {ECO:0000256|HAMAP-Rule:MF_00027}. SQ SEQUENCE 450 AA; 50221 MW; 020562101A609A34 CRC64; MKIPRIVLAG ATSGVGKTSI TCSIIYALQK QGYTVQPFKV GPDYIDPSYL SNISKNNAFN LDVWLMGKNH LLSSFISNSK SDVSVIEGVM GYYDGFGGDS NYASTHHVAS ITKSPVILIL DASKTARSIA ATALGFQKFH KNSRITGIIL NKIGSKKHEN LCRQALQKTK LPIVGVIPKN PNLNLESRHL GLFSTLDNKT LYNKIQKISK TISKNLDIEQ IIKILKNTSH LQKISKPSHK KPKTTIAIAL DTSFNFYYQD NLESLRREGA LLKFFSPVND TKIPKCDGLY IGGGFPEVLG SKLAKNQTMK KLIKNLAEDN LPIYAECGGL MYLTKSISSE NKKYKMVGVF DAETYMTKRM KLNYTKGKIN PSIISERSHS IQGHEFHYSK LNSVSTDSKF AYELEIGDGI KNHKDGLIQY NSLASYGHLY FDSFNYAENF VKNCIKYSRS // ID A9A545_NITMS Unreviewed; 128 AA. AC A9A545; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11954.1}; GN OrderedLocusNames=Nmar_0054 {ECO:0000313|EMBL:ABX11954.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11954.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11954.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11954.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11954.1; -; Genomic_DNA. DR ProteinModelPortal; A9A545; -. DR STRING; 436308.Nmar_0054; -. DR EnsemblBacteria; ABX11954; ABX11954; Nmar_0054. DR KEGG; nmr:Nmar_0054; -. DR eggNOG; arCOG04279; Archaea. DR eggNOG; COG1786; LUCA. DR HOGENOM; HOG000149526; -. DR KO; K09128; -. DR OMA; FPYGKGS; -. DR BioCyc; NMAR436308:GI3J-54-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016772; F:transferase activity, transferring phosphorus-containing groups; IEA:InterPro. DR GO; GO:0016310; P:phosphorylation; IEA:InterPro. DR Gene3D; 3.50.30.10; -; 1. DR InterPro; IPR015928; Aconitase/3IPM_dehydase_swvl. DR InterPro; IPR002840; DUF126. DR InterPro; IPR008279; PEP-util_enz_mobile_dom. DR InterPro; IPR012016; UPF0107. DR Pfam; PF01989; DUF126; 1. DR PIRSF; PIRSF004966; UCP004966; 1. DR SUPFAM; SSF52016; SSF52016; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 20 99 DUF126. {ECO:0000259|Pfam:PF01989}. SQ SEQUENCE 128 AA; 13575 MW; 95DE01ECF2A2F7F8 CRC64; MKVLVSGKVE GIVLKSKDAI NFLGTVDKKT GIISDKNHDL YDKSIKDTIL VFPSGVGSSV GAYTIYSIKS NGTAPLAMIC QKADLTVATG CALANIPLVV LPDEEFSSIN NGMKLSLDTD ASHPLQYQ // ID A9A3C8_NITMS Unreviewed; 212 AA. AC A9A3C8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Peptidase C26 {ECO:0000313|EMBL:ABX12557.1}; GN OrderedLocusNames=Nmar_0661 {ECO:0000313|EMBL:ABX12557.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12557.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12557.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12557.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12557.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3C8; -. DR STRING; 436308.Nmar_0661; -. DR EnsemblBacteria; ABX12557; ABX12557; Nmar_0661. DR KEGG; nmr:Nmar_0661; -. DR eggNOG; arCOG00088; Archaea. DR eggNOG; COG2071; LUCA. DR HOGENOM; HOG000104462; -. DR KO; K07010; -. DR OMA; LGIMWHP; -. DR BioCyc; NMAR436308:GI3J-686-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR GO; GO:0006541; P:glutamine metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.880; -; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR InterPro; IPR011697; Peptidase_C26. DR Pfam; PF07722; Peptidase_C26; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 212 Glutamine amidotransferase type-1. FT {ECO:0000259|PROSITE:PS51273}. SQ SEQUENCE 212 AA; 24452 MW; 4E23ECA8650F0851 CRC64; MVKKIGITLR IETIQEYDEK RDALSHDWFD FFQKLNCLPV LIPNKLREVE SFLEEMDLNG LILSGGDNIG DDPERDKTEK KIMTFAMTNN IPLLGVCRGM QVINQFFNGK IIFDNSNIHV GKNHVVDIID TKFSNFLQTN TMNVNSFHHN LIDKSSLGKN LIPFAFSSID QTIEGFYHEN SPILGVMWHP ERVNLNSNQT ELVNMLYCDK IW // ID A9A2H8_NITMS Unreviewed; 276 AA. AC A9A2H8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 55. DE SubName: Full=Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX13217.1}; GN OrderedLocusNames=Nmar_1321 {ECO:0000313|EMBL:ABX13217.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13217.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13217.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13217.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases CC (SDR) family. {ECO:0000256|RuleBase:RU000363}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13217.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H8; -. DR STRING; 436308.Nmar_1321; -. DR EnsemblBacteria; ABX13217; ABX13217; Nmar_1321. DR KEGG; nmr:Nmar_1321; -. DR eggNOG; arCOG01259; Archaea. DR eggNOG; COG1028; LUCA. DR OMA; WTESISH; -. DR BioCyc; NMAR436308:GI3J-1354-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 2. DR Pfam; PF00106; adh_short; 1. DR PRINTS; PR00081; GDHRDH. DR PRINTS; PR00080; SDRFAMILY. DR SUPFAM; SSF51735; SSF51735; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 276 AA; 30229 MW; 48BE6EA19E96FBB2 CRC64; MQKVALVTGS SSGIGLEASL ALAKDGYHTF ASMRDTSKAG ELENAAKKDN LPIEVIELDV DKEESIVSAV KKVIDSAGRL DVLVNNAGYG QFGCTEDVSV DDFRKQFETN FFSIVRIIQE VTPIMRNQNS GSIINISSVA GRMGLPGSPA YISSKFALEG LGECLRYELG QFGIKTTLIE PGVIKTNFFE SMKIPDSKTD PKYKELTDHI LAGLKMMVQM GTAPSQVAEV IIKAIHDDEM LPRYVVGTDA AMFMEAKKMK TDLEFEKYMS KELFPG // ID A9A461_NITMS Unreviewed; 80 AA. AC A9A461; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 44. DE SubName: Full=Like-Sm ribonucleoprotein core {ECO:0000313|EMBL:ABX12245.1}; GN OrderedLocusNames=Nmar_0349 {ECO:0000313|EMBL:ABX12245.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12245.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12245.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12245.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12245.1; -; Genomic_DNA. DR ProteinModelPortal; A9A461; -. DR STRING; 436308.Nmar_0349; -. DR EnsemblBacteria; ABX12245; ABX12245; Nmar_0349. DR KEGG; nmr:Nmar_0349; -. DR eggNOG; arCOG00998; Archaea. DR eggNOG; COG1958; LUCA. DR HOGENOM; HOG000223550; -. DR KO; K04796; -. DR OMA; MKIMADE; -. DR BioCyc; NMAR436308:GI3J-364-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030529; C:intracellular ribonucleoprotein complex; IEA:UniProtKB-KW. DR GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR001163; LSM_dom_euk/arc. DR Pfam; PF01423; LSM; 1. DR SMART; SM00651; Sm; 1. DR SUPFAM; SSF50182; SSF50182; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12245.1}; KW Viral nucleoprotein {ECO:0000313|EMBL:ABX12245.1}; KW Virion {ECO:0000313|EMBL:ABX12245.1}. FT DOMAIN 10 74 Sm. {ECO:0000259|SMART:SM00651}. SQ SEQUENCE 80 AA; 8993 MW; BFC03E011CC4E79B CRC64; MKIMADEIST LMTNSKDKVV LLRLRNNKTV QGTLKDFDIH MNLTLENAED VSEEKPNPIG KVLLRGDNIL AISLPEEESN // ID A9A4A3_NITMS Unreviewed; 336 AA. AC A9A4A3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Homoserine dehydrogenase {ECO:0000313|EMBL:ABX12592.1}; DE EC=1.1.1.3 {ECO:0000313|EMBL:ABX12592.1}; GN OrderedLocusNames=Nmar_0696 {ECO:0000313|EMBL:ABX12592.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12592.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12592.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12592.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12592.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0696; -. DR EnsemblBacteria; ABX12592; ABX12592; Nmar_0696. DR KEGG; nmr:Nmar_0696; -. DR eggNOG; arCOG01351; Archaea. DR eggNOG; COG0460; LUCA. DR HOGENOM; HOG000076616; -. DR KO; K00003; -. DR OMA; PSHITAV; -. DR BioCyc; NMAR436308:GI3J-721-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004412; F:homoserine dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0006520; P:cellular amino acid metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR005106; Asp/hSer_DH_NAD-bd. DR InterPro; IPR001342; HDH_cat. DR InterPro; IPR022697; HDH_short. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00742; Homoserine_dh; 1. DR Pfam; PF03447; NAD_binding_3; 1. DR PIRSF; PIRSF036497; HDH_short; 1. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW NADP {ECO:0000256|PIRSR:PIRSR036497-2}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12592.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 143 NAD_binding_3. FT {ECO:0000259|Pfam:PF03447}. FT DOMAIN 156 327 Homoserine_dh. FT {ECO:0000259|Pfam:PF00742}. FT NP_BIND 7 12 NADP. {ECO:0000256|PIRSR:PIRSR036497-2}. FT ACT_SITE 223 223 Proton donor. FT {ECO:0000256|PIRSR:PIRSR036497-1}. FT BINDING 124 124 NADP. {ECO:0000256|PIRSR:PIRSR036497-2}. FT BINDING 208 208 Substrate. FT {ECO:0000256|PIRSR:PIRSR036497-2}. SQ SEQUENCE 336 AA; 36152 MW; 0756851488F5D3FE CRC64; MRIILCGFGV VGQSLVKLFE SRAEDLYAKY GLKPRVVGVF DSKGSAMDSS GLELNKLIEV KKKFGTVKNY ADTKNTMSGI DMLKNVEADV LIETTASNYK DAEPGMTHII TAMKKGMHVI SVNKGPLALA FPSLMELATY NRVMFKFSGT VGGGTPILDY AKNSLSGERI TSFAGILNGT TNYILTNMAT GVSYEDALKD AQDKGYVEAD EALDLDGLDA AAKLVILANW IMGMKVTMPD INCTGIRKVT TEDIKKAEKN NCAVKLIASC NKELIVAPKE IPNDDPLCVN GTLNAIAFTS EHSGTQTIIG RGAGGMETAS SILRDLLDIR QEIART // ID A9A376_NITMS Unreviewed; 179 AA. AC A9A376; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12505.1}; GN OrderedLocusNames=Nmar_0609 {ECO:0000313|EMBL:ABX12505.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12505.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12505.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12505.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12505.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0609; -. DR EnsemblBacteria; ABX12505; ABX12505; Nmar_0609. DR KEGG; nmr:Nmar_0609; -. DR eggNOG; arCOG02625; Archaea. DR eggNOG; COG1451; LUCA. DR KO; K07043; -. DR OMA; YESKINW; -. DR BioCyc; NMAR436308:GI3J-633-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR002725; DUF45. DR Pfam; PF01863; DUF45; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 179 AA; 21149 MW; E255B8DFAFA56543 CRC64; MNGKIRYGKK SIGYSIVKST RRKTSEIQVD EKKIVLRVPS TKTKDEIRNI MEEKKQWIFK RQLEFADHEK RRLSTKQKTP LYMQKRTWKL ASKIGVKPSK VVVKNLKSRW GSAGKNGTIT LNRALTKTPP RIIDYVIIHE LCHLKIQNHS KAFWNLLCRF DKNYESKINW LETHSNQIL // ID A9A4K2_NITMS Unreviewed; 249 AA. AC A9A4K2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Metallophosphoesterase {ECO:0000313|EMBL:ABX12980.1}; GN OrderedLocusNames=Nmar_1084 {ECO:0000313|EMBL:ABX12980.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12980.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12980.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12980.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12980.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4K2; -. DR STRING; 436308.Nmar_1084; -. DR EnsemblBacteria; ABX12980; ABX12980; Nmar_1084. DR KEGG; nmr:Nmar_1084; -. DR eggNOG; arCOG01150; Archaea. DR eggNOG; COG1407; LUCA. DR HOGENOM; HOG000107030; -. DR KO; K06953; -. DR OMA; MGHVHPV; -. DR BioCyc; NMAR436308:GI3J-1115-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR Gene3D; 3.60.21.10; -; 1. DR InterPro; IPR004843; Calcineurin-like_PHP_apaH. DR InterPro; IPR029052; Metallo-depent_PP-like. DR InterPro; IPR024173; Pesterase_MJ0037. DR Pfam; PF00149; Metallophos; 1. DR PIRSF; PIRSF000887; Pesterase_MJ0037; 1. DR SUPFAM; SSF56300; SSF56300; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 20 116 Metallophos. {ECO:0000259|Pfam:PF00149}. SQ SEQUENCE 249 AA; 28160 MW; B08658B3ABA08800 CRC64; MLQTRIMQSK PALVLEGDRK YLVVTDLHIG FESSMASNEI FIGKNSTINE TIQELSDMID TEKPDSVILL GDIKSSMKSI SKSEWDEVPL FFDKISQKCE IVLVPGNHDA NISRLVPQNI TMISSTGMVE ENTLLTHGHT MPSENFSHVD KIIMGHVHPV FFQEDSVING QRVWISMKIE KEKIFPNKSG ELEITIIPSF NKYFYATHRK KYKKSISPII DRIKSVAKAR IVTLDGTIIG NELIIDQVL // ID A9A3D9_NITMS Unreviewed; 385 AA. AC A9A3D9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12871.1}; GN OrderedLocusNames=Nmar_0975 {ECO:0000313|EMBL:ABX12871.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12871.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12871.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12871.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12871.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0975; -. DR EnsemblBacteria; ABX12871; ABX12871; Nmar_0975. DR KEGG; nmr:Nmar_0975; -. DR eggNOG; arCOG04269; Archaea. DR eggNOG; COG1602; LUCA. DR HOGENOM; HOG000223838; -. DR OMA; GGCYYAA; -. DR BioCyc; NMAR436308:GI3J-1003-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR InterPro; IPR033167; Nre. DR InterPro; IPR006979; Nre_C. DR InterPro; IPR006978; Nre_N. DR PANTHER; PTHR38136; PTHR38136; 1. DR Pfam; PF04894; DUF650; 1. DR Pfam; PF04895; DUF651; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 266 DUF650. {ECO:0000259|Pfam:PF04894}. FT DOMAIN 277 384 DUF651. {ECO:0000259|Pfam:PF04895}. SQ SEQUENCE 385 AA; 42806 MW; B9C482708487929B CRC64; MSSDSQDIRR SILTKWHETL SKYGNLFSSD SISGTSPPSV FVGSYNYPKV FVGPMVPPIH GDTSLLDSPE KWKGKSLEEI VNFRLNLVRG TQKLSIDKTD GRYIENLQEV TMSSKPTDSD LIFQKSVSSN ISLDGESAPF GPVGEIKSAK FSGTSSVKSI EKTYYDKDLK AQDAVMNLYN SGIDISKIQK CFSIGMLGQK RKLVPTKWSI TATDDIISQS LADEVLDYAL IDSCKVFSYS HLGNHFSVVL FPHRWIYEMV EAWYSNGILG FGSDFEDARG IDHPPAIAGA YFAAKLGVLE YLSAKKIQSG AVILREIRPE YAIPVGVWQV REGIREAMKQ TPVIANNFDH ALNLASEKLS ISKSEWLAHG NISKLMRQKT LSDFF // ID A9A248_NITMS Unreviewed; 248 AA. AC A9A248; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 40. DE SubName: Full=Methyltransferase type 12 {ECO:0000313|EMBL:ABX12461.1}; GN OrderedLocusNames=Nmar_0565 {ECO:0000313|EMBL:ABX12461.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12461.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12461.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12461.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12461.1; -; Genomic_DNA. DR ProteinModelPortal; A9A248; -. DR STRING; 436308.Nmar_0565; -. DR EnsemblBacteria; ABX12461; ABX12461; Nmar_0565. DR KEGG; nmr:Nmar_0565; -. DR eggNOG; arCOG01787; Archaea. DR eggNOG; COG0500; LUCA. DR BioCyc; NMAR436308:GI3J-588-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR025714; Methyltranfer_dom. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF13847; Methyltransf_31; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12461.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12461.1}. FT DOMAIN 47 180 Methyltranfer_dom. FT {ECO:0000259|Pfam:PF13847}. SQ SEQUENCE 248 AA; 28491 MW; 89400CF6D12E1685 CRC64; MYGDAWDDMS SEYDNCVENN PNSVISNFID KEIKIISNLC KNFIHPEKKY TIIDLGCGTG RVLFSLYNIL GDSISYWGLD ASEPMIKLSK TKQSQLNLKN ISFQNYDVTD TKIDELFDDD TIKIPMCVYN TVGVIPISKR EQFFDNMNRL AGKDGFVLLS AFNGDDFAFA SPQIYHPMKS MVKQIDTDSF DEEKLAFRNS LGYYSQWFKK TQLQQFLKSD VDPIPIEVPI DDVSRILGHV FVDRFIEN // ID A9A1B4_NITMS Unreviewed; 136 AA. AC A9A1B4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABX12749.1}; GN OrderedLocusNames=Nmar_0853 {ECO:0000313|EMBL:ABX12749.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12749.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12749.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12749.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12749.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1B4; -. DR STRING; 436308.Nmar_0853; -. DR EnsemblBacteria; ABX12749; ABX12749; Nmar_0853. DR KEGG; nmr:Nmar_0853; -. DR eggNOG; arCOG02708; Archaea. DR eggNOG; COG0346; LUCA. DR HOGENOM; HOG000107221; -. DR KO; K01759; -. DR OMA; YHGFTPA; -. DR BioCyc; NMAR436308:GI3J-880-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051213; F:dioxygenase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.180.10; -; 1. DR InterPro; IPR029068; Glyas_Bleomycin-R_OHBP_Dase. DR InterPro; IPR025870; Glyoxalase-like_dom. DR Pfam; PF12681; Glyoxalase_2; 1. DR SUPFAM; SSF54593; SSF54593; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Dioxygenase {ECO:0000313|EMBL:ABX12749.1}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12749.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 116 Glyoxalase-like_dom. FT {ECO:0000259|Pfam:PF12681}. SQ SEQUENCE 136 AA; 14682 MW; 79F71CB8AF553A91 CRC64; MNIKKVGNVI LAVKDLDKSI QFYNEIIGLP IKNQRRTWVD LGTSGALLSL HPASLTEQQG NALESGITVG FLVGDVKSAV DELKEKGVNI HRDIVEKDAG KNAVISDPDG YLISLFEPSF SDKAEQTGGY HGFTPA // ID A9A3Y1_NITMS Unreviewed; 382 AA. AC A9A3Y1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ABX13681.1}; GN OrderedLocusNames=Nmar_1785 {ECO:0000313|EMBL:ABX13681.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13681.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13681.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13681.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13681.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Y1; -. DR STRING; 436308.Nmar_1785; -. DR EnsemblBacteria; ABX13681; ABX13681; Nmar_1785. DR KEGG; nmr:Nmar_1785; -. DR eggNOG; arCOG01064; Archaea. DR eggNOG; COG0446; LUCA. DR KO; K17218; -. DR OMA; VSMEGEE; -. DR BioCyc; NMAR436308:GI3J-1833-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 3. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR Pfam; PF07992; Pyr_redox_2; 2. DR SUPFAM; SSF51905; SSF51905; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 138 FAD/NAD-binding_dom. FT {ECO:0000259|Pfam:PF07992}. FT DOMAIN 190 295 FAD/NAD-binding_dom. FT {ECO:0000259|Pfam:PF07992}. SQ SEQUENCE 382 AA; 42094 MW; E1261E1EDDAF548E CRC64; MTDIPHVVIL GGGFGGLATA NEIRNSLSSS QVKITIIDKK DWFMVGFAKL WIINGTRTFE NSIGHLNQLE KKEINFIQDE ILSIDLQNKN VKTKQEDISY DFLVISLGAV LAPQKIPGLT ENGFNLYDHN QLSEIHNKLQ NIDSGKIAIS IMGMPYKCPP APFEASLLID SMLRKRGVRD SVQIDFYSPA PITLPAAGPE VSKKILELVN SEKITFHNSS KIKSVESNKL IFENGEAEFD LLLAVPPHIA PKVIYDSGLA KESGFIQIDR DCKTPFEDVF AVGDVTSLVV TENKAVPKAG IFAEGEGITV AKNIVSKLQS KEESELFDGK GGCFIESGRE TASIIEVDMF SQPEPSTSIS EQTSENLSSK LEFEKDRLSK WL // ID A9A5A1_NITMS Unreviewed; 207 AA. AC A9A5A1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 35. DE SubName: Full=Membrane protein-like protein {ECO:0000313|EMBL:ABX12300.1}; GN OrderedLocusNames=Nmar_0404 {ECO:0000313|EMBL:ABX12300.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12300.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12300.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12300.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12300.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0404; -. DR EnsemblBacteria; ABX12300; ABX12300; Nmar_0404. DR KEGG; nmr:Nmar_0404; -. DR eggNOG; arCOG10126; Archaea. DR eggNOG; COG1422; LUCA. DR HOGENOM; HOG000105914; -. DR OMA; WQKERMA; -. DR BioCyc; NMAR436308:GI3J-421-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR002809; DUF106_TM. DR Pfam; PF01956; DUF106; 1. DR SMART; SM01415; DUF106; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 58 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 119 140 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 179 199 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 207 AA; 23542 MW; 5E2A4312C82EE70E CRC64; MDFSFILLFI ESIPLQFDFF GGERGALGSD DPIIKGLILS MFAVTGFGIL LNIFNAAVRK KMVDQVKLKR IMKETRGWQK ERMAAMRSKD TARAAELNKK SAYMNKMSME MMQMNMRPMM ITFVPLILIF YLVLPQLFAY TVAVSPIPLN VIPGDMFQLT CTAEQAADPE HVCQTENALY LWAWYFLSSI AFSGIIMRLT KTSMDLS // ID A9A3F7_NITMS Unreviewed; 141 AA. AC A9A3F7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ABX12889.1}; GN OrderedLocusNames=Nmar_0993 {ECO:0000313|EMBL:ABX12889.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12889.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12889.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12889.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12889.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0993; -. DR EnsemblBacteria; ABX12889; ABX12889; Nmar_0993. DR KEGG; nmr:Nmar_0993; -. DR eggNOG; arCOG03937; Archaea. DR eggNOG; ENOG410Y6B9; LUCA. DR HOGENOM; HOG000108579; -. DR OMA; GQTRESF; -. DR BioCyc; NMAR436308:GI3J-1021-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR InterPro; IPR007159; SpoVT-AbrB_dom. DR SMART; SM00966; SpoVT_AbrB; 1. DR TIGRFAMs; TIGR01439; lp_hng_hel_AbrB; 1. DR PROSITE; PS51740; SPOVT_ABRB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 94 141 SpoVT-AbrB. FT {ECO:0000259|PROSITE:PS51740}. SQ SEQUENCE 141 AA; 15743 MW; BB8F3516A3CB8727 CRC64; MSGNTNQYDP TAMFKDWIQK SGRAQAEFMK NFGALMTNQT SKTFNPLDTL KEVSDNTRQA QSNMMENMTS MQNKSMDTMF SIGQMLPSFM NWGAYKTTIS SNGRISIPEA ERNALGLGEG DLVQVIVLPI AKKSKAREVK N // ID A9A3V1_NITMS Unreviewed; 259 AA. AC A9A3V1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Excalibur domain protein {ECO:0000313|EMBL:ABX13363.1}; GN OrderedLocusNames=Nmar_1467 {ECO:0000313|EMBL:ABX13363.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13363.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13363.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13363.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13363.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V1; -. DR STRING; 436308.Nmar_1467; -. DR EnsemblBacteria; ABX13363; ABX13363; Nmar_1467. DR KEGG; nmr:Nmar_1467; -. DR eggNOG; arCOG03192; Archaea. DR eggNOG; COG1525; LUCA. DR KO; K01174; -. DR BioCyc; NMAR436308:GI3J-1504-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004518; F:nuclease activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 2.40.50.90; -; 1. DR InterPro; IPR016071; Staphylococal_nuclease_OB-fold. DR InterPro; IPR002071; Thermonucl_AS. DR Pfam; PF00565; SNase; 1. DR SMART; SM00318; SNc; 1. DR SUPFAM; SSF50199; SSF50199; 1. DR PROSITE; PS01284; TNASE_2; 1. DR PROSITE; PS50830; TNASE_3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 84 173 TNase-like. FT {ECO:0000259|PROSITE:PS50830}. SQ SEQUENCE 259 AA; 28425 MW; 7C5D72B74BB06454 CRC64; MNTKLLRNLG IAAVVVIVTI FAVGSIEQQE QKLDSVENKI EVESVPVENE IEVKNEPVEN KIVESVPVEK QIVVKSTECS GDALCFSGKI TQIIDGDTVK VDGKSIRFAL VDAPELKYDG GQAKQFLEQV CPVGSQVIVD QDDDQLSDKY GRMLGVIYCN GMNLNQEILD SGIGDLYEAF CDQSEFATHY WATKHGCGDS EDEITTQQIQ DCDSSYPDFC IPSSPPDLDC GDISQKDFTV LQPDPHRFDG DKDGIGCES // ID A9A514_NITMS Unreviewed; 179 AA. AC A9A514; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 64. DE RecName: Full=Adenylyl-sulfate kinase {ECO:0000256|RuleBase:RU004347}; DE EC=2.7.1.25 {ECO:0000256|RuleBase:RU004347}; GN OrderedLocusNames=Nmar_0023 {ECO:0000313|EMBL:ABX11923.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11923.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11923.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11923.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the synthesis of activated sulfate. CC {ECO:0000256|RuleBase:RU004347}. CC -!- CATALYTIC ACTIVITY: ATP + adenylyl sulfate = ADP + 3'- CC phosphoadenylyl sulfate. {ECO:0000256|RuleBase:RU004347}. CC -!- PATHWAY: Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite CC from sulfate: step 2/3. {ECO:0000256|RuleBase:RU004347}. CC -!- SIMILARITY: Belongs to the APS kinase family. CC {ECO:0000256|RuleBase:RU004347}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11923.1; -; Genomic_DNA. DR ProteinModelPortal; A9A514; -. DR STRING; 436308.Nmar_0023; -. DR EnsemblBacteria; ABX11923; ABX11923; Nmar_0023. DR KEGG; nmr:Nmar_0023; -. DR eggNOG; arCOG01040; Archaea. DR eggNOG; COG0529; LUCA. DR HOGENOM; HOG000228204; -. DR KO; K00860; -. DR OMA; CRILDGD; -. DR BioCyc; NMAR436308:GI3J-23-MONOMER; -. DR UniPathway; UPA00140; UER00205. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004020; F:adenylylsulfate kinase activity; IEA:UniProtKB-EC. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0070814; P:hydrogen sulfide biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0000103; P:sulfate assimilation; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR002891; APS_kinase. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00455; apsK; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU004347}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000256|RuleBase:RU004347, ECO:0000313|EMBL:ABX11923.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU004347}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU004347, KW ECO:0000313|EMBL:ABX11923.1}. SQ SEQUENCE 179 AA; 20043 MW; 6FBCD9D560AA5029 CRC64; MGKSEIFCMK PFVLWMTGLP CSGKTTIVKD LQKDIPNLAM LDGDELREWF SPKDFSKAGR DEHNKKVAHL AKLLLKHGVP SAVSLVSPYL ENRENARTIV DAGDQFAECY VKCSLEECEK RDVKGMYAKA RKGEIKGFTG IDDPYEAPEK ADLIVDTENE SLGDSANKVK EFLKSRNLL // ID A9A3D2_NITMS Unreviewed; 513 AA. AC A9A3D2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12561.1}; GN OrderedLocusNames=Nmar_0665 {ECO:0000313|EMBL:ABX12561.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12561.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12561.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12561.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12561.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3D2; -. DR STRING; 436308.Nmar_0665; -. DR EnsemblBacteria; ABX12561; ABX12561; Nmar_0665. DR KEGG; nmr:Nmar_0665; -. DR eggNOG; arCOG02785; Archaea. DR eggNOG; COG3119; LUCA. DR OMA; ITSIWIL; -. DR BioCyc; NMAR436308:GI3J-690-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008484; F:sulfuric ester hydrolase activity; IEA:InterPro. DR Gene3D; 3.40.720.10; -; 1. DR InterPro; IPR017849; Alkaline_Pase-like_a/b/a. DR InterPro; IPR017850; Alkaline_phosphatase_core. DR InterPro; IPR000917; Sulfatase_N. DR Pfam; PF00884; Sulfatase; 1. DR SUPFAM; SSF53649; SSF53649; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 41 62 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 87 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 102 121 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 133 154 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 219 428 Sulfatase. {ECO:0000259|Pfam:PF00884}. SQ SEQUENCE 513 AA; 59746 MW; FDFDE62C6906905B CRC64; MVSLFSEPIS KFPFHPFLIG FFFVISLFYN NIRVLNFDEI LIPLIIVLGI ITSIWILINL IVKNNLKSSL ILSLVLILFF SYGHIYLEID HFTINEFDIG KHRFLLIPFF SMFILGTILL IRTKKILDNT TLITNTIFLV LVVIVLVNIQ LYYFENPSYF YLNQNIESNT ISNNINTFPN IYFIVLDGYP GYRSLELSHQ NDGEFFNYFK NNGFFVSENS FSNYQVTHLS VPSTLNLDYL HPLAEIKDGV YDQRDFHLLG NDNKLMNFLK SNGYLIVNFD SSWSFSRDMK HADLQLCGDN QFLNSEFLIM LTKTSMLNPV YTKAFENDLV ELRLCAFDQI LDIDKRVSEP FFVFSHMYMP HPPYLFGPNG EILSPDELDL IAYSPEKQSA YFDQVKFLNK KIPQIVNNLL DSENPPIIVI QSDHGSAFLM GEDDTNWKHP DNNMLLERMN IINFIYLPDS PDILYDEITP VNTFRIILNH YFGTNFEILN DNSYIFNGTD FEDVTIKLKN IEN // ID A9A4P3_NITMS Unreviewed; 55 AA. AC A9A4P3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 43. DE SubName: Full=50S ribosomal protein L40e {ECO:0000313|EMBL:ABX13021.1}; GN OrderedLocusNames=Nmar_1125 {ECO:0000313|EMBL:ABX13021.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13021.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13021.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13021.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein L40e family. CC {ECO:0000256|SAAS:SAAS00580854}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13021.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4P3; -. DR STRING; 436308.Nmar_1125; -. DR EnsemblBacteria; ABX13021; ABX13021; Nmar_1125. DR KEGG; nmr:Nmar_1125; -. DR eggNOG; arCOG04049; Archaea. DR eggNOG; COG1552; LUCA. DR HOGENOM; HOG000105265; -. DR KO; K02927; -. DR OMA; NCGARND; -. DR BioCyc; NMAR436308:GI3J-1156-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:InterPro. DR InterPro; IPR001975; Ribosomal_L40e. DR InterPro; IPR011332; Ribosomal_zn-bd. DR SMART; SM01377; Ribosomal_L40e; 1. DR SUPFAM; SSF57829; SSF57829; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX13021.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX13021.1}. SQ SEQUENCE 55 AA; 6403 MW; 746E055928BC7A54 CRC64; MPITDPEKKR IAQQARLVMR ICFNCGARND VGATRCRKCR NPYLRLKNRN LGVKK // ID A9A3G5_NITMS Unreviewed; 83 AA. AC A9A3G5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 45. DE SubName: Full=Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABX12897.1}; GN OrderedLocusNames=Nmar_1001 {ECO:0000313|EMBL:ABX12897.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12897.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12897.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12897.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12897.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3G5; -. DR STRING; 436308.Nmar_1001; -. DR EnsemblBacteria; ABX12897; ABX12897; Nmar_1001. DR KEGG; nmr:Nmar_1001; -. DR eggNOG; arCOG01117; Archaea. DR eggNOG; COG1522; LUCA. DR HOGENOM; HOG000225449; -. DR BioCyc; NMAR436308:GI3J-1029-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.70.920; -; 1. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR019887; Tscrpt_reg_AsnC/Lrp_C. DR Pfam; PF01037; AsnC_trans_reg; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 73 AsnC_trans_reg. FT {ECO:0000259|Pfam:PF01037}. SQ SEQUENCE 83 AA; 9366 MW; 2BB28A7A51254E3A CRC64; MLAYILISCN TGSETTVISE LKDMPEIVEI NGIWGKYDIF LKISTTDTNK IDQIVQRLRN HPDVTDTYTM HVLYGQGGSI DDD // ID A9A1M2_NITMS Unreviewed; 316 AA. AC A9A1M2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=von Willebrand factor type A {ECO:0000313|EMBL:ABX13537.1}; GN OrderedLocusNames=Nmar_1641 {ECO:0000313|EMBL:ABX13537.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13537.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13537.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13537.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13537.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1M2; -. DR STRING; 436308.Nmar_1641; -. DR EnsemblBacteria; ABX13537; ABX13537; Nmar_1641. DR KEGG; nmr:Nmar_1641; -. DR eggNOG; arCOG02902; Archaea. DR eggNOG; COG2304; LUCA. DR HOGENOM; HOG000277368; -. DR KO; K07114; -. DR OMA; RATSGDE; -. DR BioCyc; NMAR436308:GI3J-1686-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.410; -; 1. DR InterPro; IPR024163; Aerotolerance_reg_N. DR InterPro; IPR002035; VWF_A. DR Pfam; PF07584; BatA; 1. DR Pfam; PF00092; VWA; 1. DR SMART; SM00327; VWA; 1. DR SUPFAM; SSF53300; SSF53300; 1. DR PROSITE; PS50234; VWFA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 58 75 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 292 309 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 89 276 VWFA. {ECO:0000259|PROSITE:PS50234}. SQ SEQUENCE 316 AA; 34635 MW; 4C26931F098DBEC2 CRC64; MEIHFEYLYA LFLLLIIPGL YVLYSKYNSE KKDSIMKFSS LKIVKKSVMG KNFLRKHLPF VLMMGILGLA IIGLANPQIP TLSVENGINL SIVLDGSESM AATDYEPTRL DAAKNAINNL ILKMGPQHNV GVVLFESGAT TVSYLTPDKE KSVNAISSIE QGLGATAIGD GLALGVDMAS SIPDKKGVVI LLSDGVHNSG LVTPEEATEY AKINNVQIHT IGLGSIEPVF LRDDIYGEPQ YAELDEETLV IIAQQTSGNY YKSLDEQTLN EIFVNLSSNL AYEIEYSTIR DWFIAAAIGL LLIDAYIIYG RYRIVA // ID A9A360_NITMS Unreviewed; 390 AA. AC A9A360; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX12489.1}; GN OrderedLocusNames=Nmar_0593 {ECO:0000313|EMBL:ABX12489.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12489.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12489.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12489.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12489.1; -; Genomic_DNA. DR ProteinModelPortal; A9A360; -. DR STRING; 436308.Nmar_0593; -. DR EnsemblBacteria; ABX12489; ABX12489; Nmar_0593. DR KEGG; nmr:Nmar_0593; -. DR eggNOG; arCOG00657; Archaea. DR eggNOG; COG1060; LUCA. DR HOGENOM; HOG000108301; -. DR KO; K11780; -. DR OMA; LTTACRY; -. DR BioCyc; NMAR436308:GI3J-616-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:InterPro. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:InterPro. DR GO; GO:0009108; P:coenzyme biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01611; FO_synth_sub1; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR019939; CofG_family. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR03550; F420_cofG; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 60 285 Elp3. {ECO:0000259|SMART:SM00729}. SQ SEQUENCE 390 AA; 44750 MW; 75D077FDB9BFD217 CRC64; MLSKLVLNSE SLNNVLDNKE ISRHSILEIY HNAIKNPNEL FSTAQVLRKK HKGNSVTFSK KAFFNIVNLC KDSCSYCTYK AEPGEEKLSL MSKQQITELL DLAKKYRCVE ALFVTGEQPE QRYQEAKDWL KENGFTSTSE YLIHASEIAL EKGLFPHTNA GNLNFEEMKE LKKTNVSMGL MLENISERLT EKGMPHYLAA SKRPKARLEI LENSGKLQIP MTTGILVGIG ETIEEIIDSL LTIKELHQKY GNIQEVILQN FQPKQDTRMK DEPSADEKYF KTIVALSRII MPEMNIQIPP NLSPKSYQSF LSVGINDWGG ISPLTPDFVN PEFSWPEINK VDENSKSAGF DLKCRFPIYP EFFSFISKEL QEKMKEIQNE EGLVKEEYWR // ID A9A5Y2_NITMS Unreviewed; 199 AA. AC A9A5Y2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=TPR repeat-containing protein {ECO:0000313|EMBL:ABX13460.1}; GN OrderedLocusNames=Nmar_1564 {ECO:0000313|EMBL:ABX13460.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13460.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13460.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13460.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13460.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y2; -. DR STRING; 436308.Nmar_1564; -. DR EnsemblBacteria; ABX13460; ABX13460; Nmar_1564. DR KEGG; nmr:Nmar_1564; -. DR eggNOG; arCOG05195; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000110976; -. DR OMA; LYHKERI; -. DR BioCyc; NMAR436308:GI3J-1608-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 1. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR019734; TPR_repeat. DR SMART; SM00028; TPR; 4. DR SUPFAM; SSF48452; SSF48452; 1. DR PROSITE; PS50005; TPR; 2. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 175 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 199 AA; 22713 MW; 1D1FFBE0B407B804 CRC64; MDDPKTNSIL DEGNRLFLKG KYTEAIAYYD KILDENPKHL SSLNNKGYAL SKLKDYQSAM KCYDLALENY PDDLSVLVNK ISSFRKQGNL SEGLSICDKI LESNPKYNIA LYHKERILFS MDRYDDSISC CDIILNDYPE NGDVLFDKSC SLAMLSKVDD SLLLLEKSIS QGKQYKIKAQ KSKSFEKLSD NPKFQKLVS // ID A9A194_NITMS Unreviewed; 219 AA. AC A9A194; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Phosphate uptake regulator, PhoU {ECO:0000313|EMBL:ABX12380.1}; GN OrderedLocusNames=Nmar_0484 {ECO:0000313|EMBL:ABX12380.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12380.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12380.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12380.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12380.1; -; Genomic_DNA. DR ProteinModelPortal; A9A194; -. DR STRING; 436308.Nmar_0484; -. DR EnsemblBacteria; ABX12380; ABX12380; Nmar_0484. DR KEGG; nmr:Nmar_0484; -. DR eggNOG; arCOG00232; Archaea. DR eggNOG; COG0704; LUCA. DR HOGENOM; HOG000108726; -. DR KO; K02039; -. DR OMA; DHAKEIG; -. DR BioCyc; NMAR436308:GI3J-504-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0030643; P:cellular phosphate ion homeostasis; IEA:InterPro. DR GO; GO:0045936; P:negative regulation of phosphate metabolic process; IEA:InterPro. DR InterPro; IPR028366; P_trasport_PhoU. DR InterPro; IPR026022; PhoU_dom. DR PANTHER; PTHR10010:SF14; PTHR10010:SF14; 1. DR Pfam; PF01895; PhoU; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 100 PhoU. {ECO:0000259|Pfam:PF01895}. FT DOMAIN 123 194 PhoU. {ECO:0000259|Pfam:PF01895}. SQ SEQUENCE 219 AA; 25059 MW; FFA5A6B895FE73F9 CRC64; MTRLIDPSLQ KLSFIMAEMG DMVIESISLA IDSYLDGTNT MDKVLALSDS IRSKYYEVED LTFDMLLKFQ PVADDFRLIR SSTEISYAFS RFGRYAYDIT QVRDLFGDVS ECTNASLIES TKKVKHMIKE AVMSFAELDV RKAVKIREDE KVIDQIYKDR LPKLIESNNT KCALAEALLL RYLERIGDHA VFMSDAINYI VTGKHRPSEE RIASHTKSD // ID A9A587_NITMS Unreviewed; 151 AA. AC A9A587; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 51. DE RecName: Full=50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; GN Name=rpl19e {ECO:0000256|HAMAP-Rule:MF_01475}; GN OrderedLocusNames=Nmar_0390 {ECO:0000313|EMBL:ABX12286.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12286.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12286.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12286.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000256|HAMAP- CC Rule:MF_01475}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_01475}. CC -!- SIMILARITY: Belongs to the ribosomal protein L19e family. CC {ECO:0000256|HAMAP-Rule:MF_01475}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12286.1; -; Genomic_DNA. DR ProteinModelPortal; A9A587; -. DR STRING; 436308.Nmar_0390; -. DR EnsemblBacteria; ABX12286; ABX12286; Nmar_0390. DR KEGG; nmr:Nmar_0390; -. DR eggNOG; arCOG04089; Archaea. DR eggNOG; COG2147; LUCA. DR HOGENOM; HOG000231276; -. DR KO; K02885; -. DR OMA; LKCGENR; -. DR BioCyc; NMAR436308:GI3J-407-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0070180; F:large ribosomal subunit rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.1200.60; -; 1. DR Gene3D; 1.10.1650.10; -; 1. DR HAMAP; MF_01475; Ribosomal_L19e; 1. DR InterPro; IPR027547; Ribosomal_L19/L19e. DR InterPro; IPR000196; Ribosomal_L19/L19e_dom. DR InterPro; IPR015972; Ribosomal_L19/L19e_dom1. DR InterPro; IPR015974; Ribosomal_L19/L19e_dom3. DR Pfam; PF01280; Ribosomal_L19e; 1. DR SMART; SM01416; Ribosomal_L19e; 1. DR SUPFAM; SSF48140; SSF48140; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01475, KW ECO:0000313|EMBL:ABX12286.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01475, KW ECO:0000313|EMBL:ABX12286.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01475}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01475}. SQ SEQUENCE 151 AA; 17103 MW; 75E77505576797FF CRC64; MVVNLKAKKR LASRVTGVGV HRIKFDADHL TDVADAITRE NIRSLITANT IKIDSFTGTS RGRAQTKKAQ RNKRGTKQGS KQGRKGARVG KKEIYVAKVR SLRRLLKIAK DRKELTNPEF WALYKKVGGN TVRNKAHLRQ LMEEIVAKRK N // ID A9A4I7_NITMS Unreviewed; 337 AA. AC A9A4I7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE SubName: Full=Isopropylmalate/isohomocitrate dehydrogenase {ECO:0000313|EMBL:ABX12965.1}; DE EC=1.1.1.85 {ECO:0000313|EMBL:ABX12965.1}; GN OrderedLocusNames=Nmar_1069 {ECO:0000313|EMBL:ABX12965.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12965.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12965.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12965.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the isocitrate and isopropylmalate CC dehydrogenases family. {ECO:0000256|RuleBase:RU004443}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12965.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4I7; -. DR STRING; 436308.Nmar_1069; -. DR EnsemblBacteria; ABX12965; ABX12965; Nmar_1069. DR KEGG; nmr:Nmar_1069; -. DR eggNOG; arCOG01163; Archaea. DR eggNOG; COG0473; LUCA. DR HOGENOM; HOG000021113; -. DR KO; K00052; -. DR OMA; LGARRWH; -. DR BioCyc; NMAR436308:GI3J-1100-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003862; F:3-isopropylmalate dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0009098; P:leucine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.718.10; -; 1. DR InterPro; IPR019818; IsoCit/isopropylmalate_DH_CS. DR InterPro; IPR001804; Isocitrate/isopropylmalate_DH. DR InterPro; IPR024084; IsoPropMal-DH-like_dom. DR InterPro; IPR011828; LEU3_arc. DR PANTHER; PTHR11835; PTHR11835; 1. DR Pfam; PF00180; Iso_dh; 1. DR SMART; SM01329; Iso_dh; 1. DR TIGRFAMs; TIGR02088; LEU3_arch; 1. DR PROSITE; PS00470; IDH_IMDH; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000256|RuleBase:RU004444, KW ECO:0000313|EMBL:ABX12965.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 337 AA; 36735 MW; E7161E7F99B1C14B CRC64; MYKISLITGD GIGPELSDSA VSVLETIHDK LDLKFGITKL SAGDKALEQT GKALPDDTVS AIKQSDACMK APVGESAADV IVVLRRMLDL YANIRPAKSY PHMPALRDDI DMVIVRENTE DLYTGKEFSL GDSSVALRII SEQASKRIAK YAFETAKMRN DKKKVTCVHK SNVMRVTDGM FAKACTEVSK DYPDISFEQM YVDACAMNLI RQPQEFDVVV TTNLFGDILS DESSQVVGGL GMAPAANIGD NFALFEPVHG AAFDIAGQNI ANPSSFLLSI KMMLDWLGTK NSDSKCFEVG QKLESTIFNL VKTGVKTKDI GGDKTTSEFT KQITDNL // ID A9A4V4_NITMS Unreviewed; 203 AA. AC A9A4V4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE RecName: Full=30S ribosomal protein S3Ae {ECO:0000256|HAMAP-Rule:MF_00359, ECO:0000256|SAAS:SAAS00534247}; DE AltName: Full=Ribosomal protein S1e {ECO:0000256|HAMAP-Rule:MF_00359}; GN Name=rps3ae {ECO:0000256|HAMAP-Rule:MF_00359}; GN OrderedLocusNames=Nmar_1512 {ECO:0000313|EMBL:ABX13408.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13408.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13408.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13408.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein S3Ae family. CC {ECO:0000256|HAMAP-Rule:MF_00359, ECO:0000256|SAAS:SAAS00534245}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13408.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1512; -. DR EnsemblBacteria; ABX13408; ABX13408; Nmar_1512. DR KEGG; nmr:Nmar_1512; -. DR eggNOG; arCOG04186; Archaea. DR eggNOG; COG1890; LUCA. DR HOGENOM; HOG000105219; -. DR KO; K02984; -. DR OMA; GHDTTRE; -. DR BioCyc; NMAR436308:GI3J-1554-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00359; Ribosomal_S3Ae; 1. DR InterPro; IPR030838; 30S_S3Ae. DR InterPro; IPR001593; Ribosomal_S3Ae. DR Pfam; PF01015; Ribosomal_S3Ae; 1. DR SMART; SM01397; Ribosomal_S3Ae; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00359, KW ECO:0000256|SAAS:SAAS00534248, ECO:0000313|EMBL:ABX13408.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00359, KW ECO:0000256|SAAS:SAAS00534248, ECO:0000313|EMBL:ABX13408.1}. SQ SEQUENCE 203 AA; 23584 MW; 44544D7EEF9169C0 CRC64; MARRKGRVKD KWREKRWVTV NAPDSFNNVP IGYVPITDDE NAAGRVLEVT LYDILKGDPS QHQYKIYFQI NKVDGDNAST IFKRFEYSKE FLRSLVRRGS SKINFIIDVK TKDGYIFRIK VIALTHRQLN TSRKHALRLI ARDVINKQVP DMTIEQFVQA TCYSKINSDI MAAFKKVIRV RHVGLEKVKL IRTAEKETVL LEA // ID A9A3V6_NITMS Unreviewed; 169 AA. AC A9A3V6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 48. DE SubName: Full=Dual specificity protein phosphatase {ECO:0000313|EMBL:ABX13656.1}; GN OrderedLocusNames=Nmar_1760 {ECO:0000313|EMBL:ABX13656.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13656.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13656.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13656.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13656.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3V6; -. DR STRING; 436308.Nmar_1760; -. DR EnsemblBacteria; ABX13656; ABX13656; Nmar_1760. DR KEGG; nmr:Nmar_1760; -. DR eggNOG; arCOG03413; Archaea. DR eggNOG; COG2453; LUCA. DR HOGENOM; HOG000108423; -. DR KO; K14165; -. DR OMA; CERKPPN; -. DR BioCyc; NMAR436308:GI3J-1807-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004725; F:protein tyrosine phosphatase activity; IEA:InterPro. DR GO; GO:0008138; F:protein tyrosine/serine/threonine phosphatase activity; IEA:InterPro. DR Gene3D; 3.90.190.10; -; 1. DR InterPro; IPR000340; Dual-sp_phosphatase_cat-dom. DR InterPro; IPR029021; Prot-tyrosine_phosphatase-like. DR InterPro; IPR000242; PTPase_domain. DR InterPro; IPR003595; Tyr_Pase_cat. DR InterPro; IPR000387; TYR_PHOSPHATASE_dom. DR InterPro; IPR020422; TYR_PHOSPHATASE_DUAL_dom. DR Pfam; PF00782; DSPc; 1. DR PRINTS; PR00700; PRTYPHPHTASE. DR SMART; SM00195; DSPc; 1. DR SMART; SM00404; PTPc_motif; 1. DR SUPFAM; SSF52799; SSF52799; 1. DR PROSITE; PS50056; TYR_PHOSPHATASE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 90 158 TYR_PHOSPHATASE_2. FT {ECO:0000259|PROSITE:PS50056}. SQ SEQUENCE 169 AA; 19085 MW; A5AF4983AC36E771 CRC64; MLTSHMSKPG NLWRKVHGKI TKKPTNFSWL IEEKLAGSGM PTSFDEFDWI VNQGVKSIVT MTENSLPDNW VQNIGYLHVP TPDFTAPDME NIDSAVDFIH EQITNDHAVM VHCAAGMGRA GTILACYFVK YKKFTAEDAI KKIREERPGS IQSEVQELAI GFYEKHVKN // ID A9A5L8_NITMS Unreviewed; 445 AA. AC A9A5L8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 50. DE SubName: Full=Threonine synthase {ECO:0000313|EMBL:ABX12729.1}; DE EC=4.2.3.1 {ECO:0000313|EMBL:ABX12729.1}; GN OrderedLocusNames=Nmar_0833 {ECO:0000313|EMBL:ABX12729.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12729.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12729.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12729.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12729.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5L8; -. DR STRING; 436308.Nmar_0833; -. DR EnsemblBacteria; ABX12729; ABX12729; Nmar_0833. DR KEGG; nmr:Nmar_0833; -. DR eggNOG; arCOG01434; Archaea. DR eggNOG; COG0498; LUCA. DR HOGENOM; HOG000076502; -. DR KO; K01733; -. DR OMA; CEMASGA; -. DR BioCyc; NMAR436308:GI3J-860-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004795; F:threonine synthase activity; IEA:UniProtKB-EC. DR InterPro; IPR001926; TrpB-like_PLP-dep. DR Pfam; PF00291; PALP; 1. DR SUPFAM; SSF53686; SSF53686; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12729.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 113 420 PALP. {ECO:0000259|Pfam:PF00291}. SQ SEQUENCE 445 AA; 48904 MW; 8FB799B6C1649FB7 CRC64; MQGDAYLKCI DPQCGMEYPI ESTNVQCEKG HLLDVKYKHT PSENLKEVFY NRRNSQGNIF NESGVWRFRE LLNFCQIDTE NIEECSKYLV SLDGAEGRLS KPYHMAKASE LVGISNDNLW LQPEGYNPSG SFKDNGMATA VTHAKMVGAK KIVCASTGNT SASAGMFAAN EGINCDVYIP AGQIAPGKLS QAYQFGAQIL EIDGNFDDAL KQSLDDAQNH DGYTVNSVNP FRIEGQKTIP FRALEYLNWE VPDWIVYPGG ALGNTSSCGK ALMELYEWGW IKKIPRIAVI NSEGASTLSD LYNGKFEGEE LRWNKGNPNT ELITRYYDDL DSKGIRPKTK ATAIQIGRPA NILKGLRALE FTNGVATTVS DSEMLDGMSV VGLNGFDCEM ASGASVVGVK KLTSEGIIQK DDTVVGILTG RQKDAMLPVD YHNNPQNKFA KPPKN // ID A9A636_NITMS Unreviewed; 241 AA. AC A9A636; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 46. DE SubName: Full=TPR repeat-containing protein {ECO:0000313|EMBL:ABX13514.1}; GN OrderedLocusNames=Nmar_1618 {ECO:0000313|EMBL:ABX13514.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13514.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13514.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13514.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13514.1; -; Genomic_DNA. DR ProteinModelPortal; A9A636; -. DR STRING; 436308.Nmar_1618; -. DR EnsemblBacteria; ABX13514; ABX13514; Nmar_1618. DR KEGG; nmr:Nmar_1618; -. DR eggNOG; arCOG05137; Archaea. DR eggNOG; COG0457; LUCA. DR HOGENOM; HOG000109907; -. DR OMA; CENEFEE; -. DR BioCyc; NMAR436308:GI3J-1662-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.25.40.10; -; 2. DR InterPro; IPR013026; TPR-contain_dom. DR InterPro; IPR011990; TPR-like_helical_dom. DR InterPro; IPR001440; TPR_1. DR InterPro; IPR019734; TPR_repeat. DR Pfam; PF00515; TPR_1; 1. DR Pfam; PF13181; TPR_8; 2. DR SMART; SM00028; TPR; 4. DR PROSITE; PS50005; TPR; 4. DR PROSITE; PS50293; TPR_REGION; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 18 207 TPR_REGION. FT {ECO:0000259|PROSITE:PS50293}. SQ SEQUENCE 241 AA; 27458 MW; B79F96CCE059C928 CRC64; MVNLLDPSNV ITRMFNAGKY EEMYNYCKSL LEKIPNDMVA LQNICLSLIY LEKYQEAISY CDKVLEIKKS DTYALKNKIY ALESLGEYQQ VLKLCEEILS SNPKDSWALN SMGLSLNESN QHKEALEYYE KALAIDPTDV TALMNKAISH SHLGDYEVAV EFYDKAQMVD SSLKEIPLAK SKLFEKLGDS DNAFLAAQGV LNKDMEKIKI AAKENKCSLF HQVCENEFEE LDSKKSKMKI N // ID A9A465_NITMS Unreviewed; 154 AA. AC A9A465; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 52. DE RecName: Full=Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; GN Name=nusA {ECO:0000256|HAMAP-Rule:MF_00945}; GN OrderedLocusNames=Nmar_0353 {ECO:0000313|EMBL:ABX12249.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12249.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12249.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12249.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Participates in transcription termination. CC {ECO:0000256|HAMAP-Rule:MF_00945}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00945}. CC -!- SIMILARITY: Belongs to the NusA family. {ECO:0000256|HAMAP- CC Rule:MF_00945}. CC -!- SIMILARITY: Contains 1 KH domain. {ECO:0000256|HAMAP- CC Rule:MF_00945}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12249.1; -; Genomic_DNA. DR ProteinModelPortal; A9A465; -. DR STRING; 436308.Nmar_0353; -. DR EnsemblBacteria; ABX12249; ABX12249; Nmar_0353. DR KEGG; nmr:Nmar_0353; -. DR eggNOG; arCOG01760; Archaea. DR eggNOG; COG0195; LUCA. DR HOGENOM; HOG000222997; -. DR KO; K02600; -. DR OMA; QIKYIAL; -. DR BioCyc; NMAR436308:GI3J-368-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006353; P:DNA-templated transcription, termination; IEA:UniProtKB-HAMAP. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 3.30.300.20; -; 2. DR HAMAP; MF_00945_A; NusA_A; 1. DR InterPro; IPR015946; KH_dom-like_a/b. DR InterPro; IPR004044; KH_dom_type_2. DR InterPro; IPR009019; KH_prok-type. DR InterPro; IPR010212; NusA_arc. DR Pfam; PF07650; KH_2; 2. DR SUPFAM; SSF54814; SSF54814; 2. DR TIGRFAMs; TIGR01952; nusA_arch; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00945}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00945}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00945}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00945}; KW Transcription termination {ECO:0000256|HAMAP-Rule:MF_00945}. FT DOMAIN 15 73 KH type-2. {ECO:0000259|Pfam:PF07650}. FT DOMAIN 35 110 KH. {ECO:0000256|HAMAP-Rule:MF_00945}. FT DOMAIN 82 137 KH type-2. {ECO:0000259|Pfam:PF07650}. SQ SEQUENCE 154 AA; 17287 MW; 79208A4E16ACCBDD CRC64; MTQSIKLTTD QMRMMSLFQN VTGATARDCV EDEKQDRVIF VVNTGKMGLA IGKGGMHIKS LQNIVKRNVE LVEFDEDPAK FLSNLLNSKL VSEVKINTRA DGTKQAIVMV DPRKKGIVVG REGRNAEKAR MLAKRYFDIT SVLINSPERQ TLEM // ID A9A159_NITMS Unreviewed; 393 AA. AC A9A159; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 42. DE SubName: Full=Glycosyl transferase group 1 {ECO:0000313|EMBL:ABX12020.1}; GN OrderedLocusNames=Nmar_0120 {ECO:0000313|EMBL:ABX12020.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12020.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12020.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12020.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12020.1; -; Genomic_DNA. DR ProteinModelPortal; A9A159; -. DR STRING; 436308.Nmar_0120; -. DR CAZy; GT4; Glycosyltransferase Family 4. DR EnsemblBacteria; ABX12020; ABX12020; Nmar_0120. DR KEGG; nmr:Nmar_0120; -. DR eggNOG; arCOG01403; Archaea. DR eggNOG; COG0438; LUCA. DR OMA; VISAYHA; -. DR BioCyc; NMAR436308:GI3J-123-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR InterPro; IPR001296; Glyco_trans_1. DR InterPro; IPR028098; Glyco_trans_4-like_N. DR Pfam; PF13439; Glyco_transf_4; 1. DR Pfam; PF00534; Glycos_transf_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12020.1}. FT DOMAIN 200 366 Glycos_transf_1. FT {ECO:0000259|Pfam:PF00534}. SQ SEQUENCE 393 AA; 45169 MW; E2A22F966BB66279 CRC64; MKIALTCPAF LPATQFGGIL FLCLDIARFV SKNHETTVYT TDLDFDNSVN KFNSELPKIE KYEKFVIKRN HVFFKIKLFF INPGLFFQLK KDKPDVIHAI GIRGFQAFVS AVYSKIYKIP LLLSDQGGLH THPEYQKGAG KILNKIQEPL VKFVINQASH IIAANEYEKS VFLKYSNEKK ITIVHNGIDY RNFAANNIDF KDKYNISESF ILFLGRFTKI KGIDLLLLSF KKIVDKKKFQ DLKLVILGAN FGYEREMNSM IEKLNLKENI LVIEKPTRGE VISAYHACKF LVLPSRWEMS PLTPLEGFAC KKPTISTNIF GIPYVVLNNK NGLLFEPESV DDLKEKIEIL LEDKELVKKL GSNGYEFVKK EYSSDNMGNQ ILKLYEKSQK KME // ID A9A2X5_NITMS Unreviewed; 105 AA. AC A9A2X5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 53. DE SubName: Full=Transcription termination factor Tfs {ECO:0000313|EMBL:ABX13652.1}; GN OrderedLocusNames=Nmar_1756 {ECO:0000313|EMBL:ABX13652.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13652.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13652.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13652.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the archaeal rpoM/eukaryotic CC RPA12/RPB9/RPC11 RNA polymerase family. CC {ECO:0000256|PIRNR:PIRNR005586}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13652.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2X5; -. DR SMR; A9A2X5; 60-104. DR STRING; 436308.Nmar_1756; -. DR EnsemblBacteria; ABX13652; ABX13652; Nmar_1756. DR KEGG; nmr:Nmar_1756; -. DR eggNOG; arCOG00579; Archaea. DR eggNOG; COG1594; LUCA. DR HOGENOM; HOG000228132; -. DR KO; K03057; -. DR OMA; MQFCDDC; -. DR BioCyc; NMAR436308:GI3J-1803-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR InterPro; IPR001529; DNA-dir_RNA_pol_M/15kDasu. DR InterPro; IPR012164; Rpa12/Rpb9/Rpc10/TFS. DR InterPro; IPR006288; TFS. DR InterPro; IPR001222; Znf_TFIIS. DR Pfam; PF01096; TFIIS_C; 1. DR PIRSF; PIRSF005586; RNApol_RpoM; 1. DR SMART; SM00661; RPOL9; 1. DR SMART; SM00440; ZnF_C2C2; 1. DR TIGRFAMs; TIGR01384; TFS_arch; 1. DR PROSITE; PS00466; ZF_TFIIS_1; 1. DR PROSITE; PS51133; ZF_TFIIS_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|RuleBase:RU004353}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|PIRNR:PIRNR005586}; KW Zinc {ECO:0000256|RuleBase:RU004353}; KW Zinc-finger {ECO:0000256|RuleBase:RU004353}. FT DOMAIN 62 102 TFIIS-type. FT {ECO:0000259|PROSITE:PS51133}. SQ SEQUENCE 105 AA; 12160 MW; E25BB62B049ECABB CRC64; MKFCPKCEVK LKKGTSGLEC SKCGYTEGAE EKQTKKTVET EEQEESILAF EGNEGEESHP TIKIECEKCG HDEAIWWMLQ TRSADEPTTQ FYRCTKCQYT WRNYA // ID A9A2G8_NITMS Unreviewed; 124 AA. AC A9A2G8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 44. DE SubName: Full=TOPRIM domain protein {ECO:0000313|EMBL:ABX13207.1}; GN OrderedLocusNames=Nmar_1311 {ECO:0000313|EMBL:ABX13207.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13207.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13207.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13207.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13207.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G8; -. DR STRING; 436308.Nmar_1311; -. DR EnsemblBacteria; ABX13207; ABX13207; Nmar_1311. DR KEGG; nmr:Nmar_1311; -. DR eggNOG; arCOG01486; Archaea. DR eggNOG; COG1658; LUCA. DR OMA; HNNANDD; -. DR BioCyc; NMAR436308:GI3J-1344-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR006171; Toprim_domain. DR PROSITE; PS50880; TOPRIM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 110 Toprim. {ECO:0000259|PROSITE:PS50880}. SQ SEQUENCE 124 AA; 14519 MW; F567BC107D6C7EEA CRC64; MLVTEQEISE LQKFVFQLNS GNGVVIVEGK RDFNALRKIG YQGEILEFHK FGGINNFADS VAKYKKIILL FDRDKKGRYL TGKTIQLLQR RTKLDLSYKK KLRQITRGKI MFIEQLVCYE SYFA // ID A9A5J4_NITMS Unreviewed; 331 AA. AC A9A5J4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-MAY-2016, entry version 56. DE RecName: Full=50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; GN Name=rpl3 {ECO:0000256|HAMAP-Rule:MF_01325}; GN OrderedLocusNames=Nmar_0809 {ECO:0000313|EMBL:ABX12705.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12705.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12705.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12705.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: One of the primary rRNA binding proteins, it binds CC directly near the 3'-end of the 23S rRNA, where it nucleates CC assembly of the 50S subunit. {ECO:0000256|HAMAP-Rule:MF_01325, CC ECO:0000256|SAAS:SAAS00023036}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with CC proteins L14 and L24e. {ECO:0000256|HAMAP-Rule:MF_01325, CC ECO:0000256|SAAS:SAAS00543876}. CC -!- SIMILARITY: Belongs to the ribosomal protein L3P family. CC {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00543877}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12705.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0809; -. DR EnsemblBacteria; ABX12705; ABX12705; Nmar_0809. DR KEGG; nmr:Nmar_0809; -. DR eggNOG; arCOG04070; Archaea. DR eggNOG; COG0087; LUCA. DR HOGENOM; HOG000107320; -. DR KO; K02906; -. DR OMA; SPTEGME; -. DR BioCyc; NMAR436308:GI3J-836-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01325_A; Ribosomal_L3_A; 1. DR InterPro; IPR000597; Ribosomal_L3. DR InterPro; IPR019928; Ribosomal_L3_arc. DR InterPro; IPR019926; Ribosomal_L3_CS. DR InterPro; IPR009000; Transl_B-barrel. DR Pfam; PF00297; Ribosomal_L3; 1. DR SUPFAM; SSF50447; SSF50447; 1. DR TIGRFAMs; TIGR03626; L3_arch; 1. DR PROSITE; PS00474; RIBOSOMAL_L3; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01325, KW ECO:0000256|SAAS:SAAS00427227, ECO:0000313|EMBL:ABX12705.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01325, KW ECO:0000256|SAAS:SAAS00427227, ECO:0000313|EMBL:ABX12705.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01325, KW ECO:0000256|SAAS:SAAS00427226}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01325, KW ECO:0000256|SAAS:SAAS00427226}. FT COILED 113 140 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 331 AA; 36702 MW; 5C50935A2F82CC58 CRC64; MGARKRHSPR RGSLAYSPRV RAKSMEARIR AWPKLDSEEP KILAHCGFKA GCVQIVSIDD REKVPNAGKQ LVSLGTVLVT PPVLILGIRG YSKDHDGLHA EFDVYAEDIP KSIAKEISLK NKQENALDNA EKSLKKIKEI FAIVAISPSA AGLEQKKPYI FEASVSGGDI PKQFAHVKEL LGKEIKIDQI FETGASVDVA AITKGKGWQG VLKRWNVKKK QHKSRKTVRE VGSLGPISPQ SVMYTVPRAG QFGFHQRVEY DKRIMIMGNT DDDKLKINPD GGFKHFGLVK GDFIVLKGSV PGAYRRLIKL RSQIRNVPDK VNKPNILEVV V // ID A9A258_NITMS Unreviewed; 100 AA. AC A9A258; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12471.1}; GN OrderedLocusNames=Nmar_0575 {ECO:0000313|EMBL:ABX12471.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12471.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12471.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12471.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12471.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12471; ABX12471; Nmar_0575. DR KEGG; nmr:Nmar_0575; -. DR eggNOG; arCOG08710; Archaea. DR eggNOG; ENOG41111NJ; LUCA. DR BioCyc; NMAR436308:GI3J-598-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 100 AA; 11640 MW; 4B18C7E37B7C4974 CRC64; MLQDSTIRKS LDQYIKNRIL EINSEIKQTF PNIKKIWKCE NEIDFLYGYY IGKIEEGALH YLLKATRASA GGYVDSFEIR GIIEEHKNEL LDTIKSAINQ // ID A9A3I4_NITMS Unreviewed; 234 AA. AC A9A3I4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12916.1}; GN OrderedLocusNames=Nmar_1020 {ECO:0000313|EMBL:ABX12916.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12916.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12916.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12916.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12916.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1020; -. DR EnsemblBacteria; ABX12916; ABX12916; Nmar_1020. DR KEGG; nmr:Nmar_1020; -. DR eggNOG; arCOG08737; Archaea. DR eggNOG; ENOG4110ZWI; LUCA. DR HOGENOM; HOG000108102; -. DR OMA; IRVSARY; -. DR BioCyc; NMAR436308:GI3J-1051-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 234 AA; 27276 MW; 9621A240F9955BED CRC64; MSKSYDVKTV VLRKNIELEE ATEIIEEKKT NPFKSLLSRP KKEQVHIHSV KLYYECILLV SGKYVADYYR KATHTISVPY NVKEVELGDG VFQTRSKSGF EKALTGKKGK NKIDINLEEH VFVKEEDELA FDHHGREIKF PFKVNSDTVE NYPKRLLQKN EPNVKRPEIT YDAALEKLQS QLKKPLETDV RELSEEFVLR EITELYVPIF EGRLIGPKKK VEIIRIDAVR KKIL // ID A9A4V6_NITMS Unreviewed; 485 AA. AC A9A4V6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 39. DE SubName: Full=Geranylgeranyl reductase {ECO:0000313|EMBL:ABX13410.1}; GN OrderedLocusNames=Nmar_1514 {ECO:0000313|EMBL:ABX13410.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13410.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13410.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13410.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13410.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4V6; -. DR STRING; 436308.Nmar_1514; -. DR EnsemblBacteria; ABX13410; ABX13410; Nmar_1514. DR KEGG; nmr:Nmar_1514; -. DR eggNOG; arCOG00570; Archaea. DR eggNOG; COG0644; LUCA. DR HOGENOM; HOG000105198; -. DR OMA; GWVCGDA; -. DR BioCyc; NMAR436308:GI3J-1556-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 1. DR InterPro; IPR003953; FAD-binding_2. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR Pfam; PF00890; FAD_binding_2; 1. DR SUPFAM; SSF51905; SSF51905; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 58 171 FAD_binding_2. FT {ECO:0000259|Pfam:PF00890}. SQ SEQUENCE 485 AA; 54036 MW; F33E490D2CBF4F98 CRC64; MADYDVIIAG GGLAGTITAQ AISHYTNQNA KILVVDRNSA MLPGRKSLSG WVCGDACSKE AVDFMTERIK VEWTRPEIEH DVKGVMAFSP DKETAIPFDG AGYMLNRQKL PEIQNERCQK MGIDFEFEKN LSGLIYEGQQ VVGVQGTDAK TSEPFKKTAK LVIDATGVAS MLRNGLKNST KVEKRIDRRD LESTGRYIMY FEPGQKELSE FDPDYCIIHL DQDIAPGGYG WVFPKADNKV NIGLGVEKSL LERRNKRLGK KDNVESLMKE YLERNTVIKN PTLSQDPEDI NNNTGIFQVS VRRQNDCMVS AGYMMVGDSA WMPKPIDAGG IGPALIAGTI LGNNVAQALE ANDVSEAGLW QYNLDFIKEY GYKTAGLELF RRLVQQMTNE QISYGMKHFL GNMDVESISK GEHPDFSGLG KLGMIIRGAM NKTVADGLRY TSKENQWLVE HYNNYPKDPS GFDEWNKTLH GRMDAAFAKV EAFGK // ID A9A3Y7_NITMS Unreviewed; 92 AA. AC A9A3Y7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13687.1}; GN OrderedLocusNames=Nmar_1791 {ECO:0000313|EMBL:ABX13687.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13687.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13687.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13687.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13687.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1791; -. DR EnsemblBacteria; ABX13687; ABX13687; Nmar_1791. DR KEGG; nmr:Nmar_1791; -. DR eggNOG; arCOG08808; Archaea. DR eggNOG; ENOG411117M; LUCA. DR HOGENOM; HOG000110318; -. DR OMA; MNETSSK; -. DR BioCyc; NMAR436308:GI3J-1839-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 33 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 39 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 86 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 92 AA; 10188 MW; 2B65EEF4B421AC65 CRC64; MNETSSKLLS GFKYVYLVAF FVLLSGFFHP LITNTSFDNV VVGVLILFVG LAGGVLLYKA ATSEKRREIF LGSGFTLMAV SLYYIFEMSG RI // ID A9A142_NITMS Unreviewed; 92 AA. AC A9A142; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE RecName: Full=Acylphosphatase {ECO:0000256|RuleBase:RU000553}; DE EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553}; GN OrderedLocusNames=Nmar_0103 {ECO:0000313|EMBL:ABX12003.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12003.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12003.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12003.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: An acylphosphate + H(2)O = a carboxylate + CC phosphate. {ECO:0000256|RuleBase:RU000553}. CC -!- SIMILARITY: Belongs to the acylphosphatase family. CC {ECO:0000256|RuleBase:RU004168}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12003.1; -; Genomic_DNA. DR ProteinModelPortal; A9A142; -. DR STRING; 436308.Nmar_0103; -. DR EnsemblBacteria; ABX12003; ABX12003; Nmar_0103. DR KEGG; nmr:Nmar_0103; -. DR eggNOG; arCOG01674; Archaea. DR eggNOG; COG1254; LUCA. DR HOGENOM; HOG000292686; -. DR KO; K01512; -. DR OMA; ACFEGEA; -. DR BioCyc; NMAR436308:GI3J-106-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003998; F:acylphosphatase activity; IEA:UniProtKB-EC. DR InterPro; IPR020456; Acylphosphatase. DR InterPro; IPR001792; Acylphosphatase-like_dom. DR InterPro; IPR017968; Acylphosphatase_CS. DR Pfam; PF00708; Acylphosphatase; 1. DR PRINTS; PR00112; ACYLPHPHTASE. DR SUPFAM; SSF54975; SSF54975; 1. DR PROSITE; PS00150; ACYLPHOSPHATASE_1; 1. DR PROSITE; PS00151; ACYLPHOSPHATASE_2; 1. DR PROSITE; PS51160; ACYLPHOSPHATASE_3; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000256|RuleBase:RU000553}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 92 Acylphosphatase-like. FT {ECO:0000259|PROSITE:PS51160}. SQ SEQUENCE 92 AA; 10545 MW; 5972C7E914C9F55B CRC64; MSNQRIRLFV TGRVQGVFFR QTLKTKAIQN DVFGWVKNLK DGRVEAILEG DEENVSRLVE WAHGGPANAI VEDVEIRNEK FSGEFSKFDV LY // ID A9A2D5_NITMS Unreviewed; 218 AA. AC A9A2D5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 53. DE RecName: Full=Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU363013}; DE Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147}; DE Short=TPI {ECO:0000256|HAMAP-Rule:MF_00147}; DE EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU363013}; DE AltName: Full=Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; GN Name=tpiA {ECO:0000256|HAMAP-Rule:MF_00147}; GN OrderedLocusNames=Nmar_0950 {ECO:0000313|EMBL:ABX12846.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12846.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12846.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12846.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the gluconeogenesis. Catalyzes CC stereospecifically the conversion of dihydroxyacetone phosphate CC (DHAP) to D-glyceraldehyde-3-phosphate (G3P). {ECO:0000256|HAMAP- CC Rule:MF_00147}. CC -!- CATALYTIC ACTIVITY: D-glyceraldehyde 3-phosphate = glycerone CC phosphate. {ECO:0000256|HAMAP-Rule:MF_00147, CC ECO:0000256|RuleBase:RU363013}. CC -!- PATHWAY: Carbohydrate biosynthesis; gluconeogenesis. CC {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU363013}. CC -!- PATHWAY: Carbohydrate degradation; glycolysis; D-glyceraldehyde 3- CC phosphate from glycerone phosphate: step 1/1. {ECO:0000256|HAMAP- CC Rule:MF_00147, ECO:0000256|RuleBase:RU363013}. CC -!- SUBUNIT: Homotetramer; dimer of dimers. {ECO:0000256|HAMAP- CC Rule:MF_00147}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00147, CC ECO:0000256|RuleBase:RU363013}. CC -!- SIMILARITY: Belongs to the triosephosphate isomerase family. CC {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU363013}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12846.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2D5; -. DR STRING; 436308.Nmar_0950; -. DR EnsemblBacteria; ABX12846; ABX12846; Nmar_0950. DR KEGG; nmr:Nmar_0950; -. DR eggNOG; arCOG01087; Archaea. DR eggNOG; COG0149; LUCA. DR HOGENOM; HOG000223030; -. DR KO; K01803; -. DR OMA; ETWAQHV; -. DR BioCyc; NMAR436308:GI3J-978-MONOMER; -. DR UniPathway; UPA00109; UER00189. DR UniPathway; UPA00138; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0004807; F:triose-phosphate isomerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006094; P:gluconeogenesis; IEA:UniProtKB-HAMAP. DR GO; GO:0006096; P:glycolytic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006098; P:pentose-phosphate shunt; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00147_A; TIM_A; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR000652; Triosephosphate_isomerase. DR InterPro; IPR022891; Triosephosphate_isomerase_arc. DR PANTHER; PTHR21139; PTHR21139; 1. DR Pfam; PF00121; TIM; 1. DR SUPFAM; SSF51351; SSF51351; 1. DR TIGRFAMs; TIGR00419; tim; 1. DR PROSITE; PS51440; TIM_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00147, KW ECO:0000256|RuleBase:RU363013}; KW Gluconeogenesis {ECO:0000256|HAMAP-Rule:MF_00147, KW ECO:0000256|RuleBase:RU363013}; KW Glycolysis {ECO:0000256|HAMAP-Rule:MF_00147, KW ECO:0000256|RuleBase:RU363013}; KW Isomerase {ECO:0000256|HAMAP-Rule:MF_00147, KW ECO:0000256|RuleBase:RU363013, ECO:0000313|EMBL:ABX12846.1}; KW Pentose shunt {ECO:0000256|HAMAP-Rule:MF_00147, KW ECO:0000256|RuleBase:RU363013}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT REGION 5 7 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00147}. FT REGION 197 198 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00147}. FT ACT_SITE 88 88 Electrophile. {ECO:0000256|HAMAP- FT Rule:MF_00147}. FT ACT_SITE 136 136 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00147}. FT BINDING 141 141 Substrate; via carbonyl oxygen. FT {ECO:0000256|HAMAP-Rule:MF_00147}. FT BINDING 176 176 Substrate; via amide nitrogen. FT {ECO:0000256|HAMAP-Rule:MF_00147}. SQ SEQUENCE 218 AA; 23512 MW; 1FB6AD603A7ACFEF CRC64; MFVINCKNYE EISGEKITKF VKTAEKVSKK FKVKIAICPP QHLIGVVANS SIPIFAQHID DSKVGSTTGF VIPELLKKSQ VNGSLINHSE HRISSKEITK LVSKLKELKM TSIVCVKDVA EARKYAKLNP NYIAIEPPEL IGSGKAVSTE RPELITKAAN AVKSANNNTK LLCGAGIVSG QDVSKAVELG SKGILVASGI IKAKNWDKII SEFAKALV // ID A9A1H0_NITMS Unreviewed; 257 AA. AC A9A1H0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13149.1}; GN OrderedLocusNames=Nmar_1253 {ECO:0000313|EMBL:ABX13149.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13149.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13149.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13149.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13149.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1253; -. DR EnsemblBacteria; ABX13149; ABX13149; Nmar_1253. DR KEGG; nmr:Nmar_1253; -. DR eggNOG; arCOG08716; Archaea. DR eggNOG; ENOG410Y4H9; LUCA. DR HOGENOM; HOG000110017; -. DR BioCyc; NMAR436308:GI3J-1286-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 225 251 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 257 AA; 28585 MW; 6935F97CD08DEC51 CRC64; MFGQLSDRTG LLTRLDVDTS GHTFEVVTVS NFDILDHEFN KNEKRLTIFI NSGLEDNLGE VTIPKNLLGG NFTFQINDVE SIQEYKSNER ISFVTLNFTG IGNNKIDIIG TDALVGVKEI VEVVPNEKIT HEEPGGGCLI ATATFGSELA PQVQQLRELR DDKLLQIESG KSFMNSFNAF YYSFSPQMAD YQRENPVFKE MVRIGITPMI TTLSLMDFAE TESEILSIGV SLIILNIGMY AGLPAIVILG IRKKSIF // ID A9A3C0_NITMS Unreviewed; 339 AA. AC A9A3C0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12549.1}; GN OrderedLocusNames=Nmar_0653 {ECO:0000313|EMBL:ABX12549.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12549.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12549.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12549.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12549.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0653; -. DR EnsemblBacteria; ABX12549; ABX12549; Nmar_0653. DR KEGG; nmr:Nmar_0653; -. DR eggNOG; arCOG06722; Archaea. DR eggNOG; COG4301; LUCA. DR HOGENOM; HOG000253490; -. DR OMA; RVEMHLV; -. DR BioCyc; NMAR436308:GI3J-678-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.150; -; 2. DR InterPro; IPR019257; MeTrfase_dom. DR InterPro; IPR017804; MeTrfase_EgtD-like. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF10017; Methyltransf_33; 1. DR PIRSF; PIRSF018005; UCP018005; 1. DR SUPFAM; SSF53335; SSF53335; 2. DR TIGRFAMs; TIGR03438; egtD_ergothio; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 209 333 Methyltransf_33. FT {ECO:0000259|Pfam:PF10017}. SQ SEQUENCE 339 AA; 39188 MW; D86EE69E6D0F4092 CRC64; MNNTLQKNKE YKKFVVDSRL QYFKPHATKI EKTFAEEISS GLGTNSKSIH PKFFYDKKGS ELFEKICSVP EYYPTRTEIS ILKKLQSELS SYLDEDFRLV ELGSGSSTKT RLILDFLTSQ KTLEYFPIDI SEILTESSEE LLNDYQNLTI TGIIDTYEGG LEFLKTYDDK SNLIIFLGSS FGNFSPIDGY KFLEKVYATM KPGDLFLIGL DLVKDKTILE SAYNDSEGVT AKFNLNVLSR INDELDADFN LQNFSHHAIY NEKDQRIEMY LKSLVDQSII ISKSDLELKL QKDELIHTEY SHKYRLSQIH DLLDDVGFEL KHTWLDDKKY FSLTLVSKT // ID A9A324_NITMS Unreviewed; 288 AA. AC A9A324; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=Putative methylisocitrate lyase {ECO:0000313|EMBL:ABX12152.1}; GN OrderedLocusNames=Nmar_0256 {ECO:0000313|EMBL:ABX12152.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12152.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12152.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12152.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12152.1; -; Genomic_DNA. DR ProteinModelPortal; A9A324; -. DR STRING; 436308.Nmar_0256; -. DR EnsemblBacteria; ABX12152; ABX12152; Nmar_0256. DR KEGG; nmr:Nmar_0256; -. DR eggNOG; arCOG00581; Archaea. DR eggNOG; COG2513; LUCA. DR HOGENOM; HOG000220040; -. DR OMA; IERSHAY; -. DR BioCyc; NMAR436308:GI3J-264-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR Gene3D; 3.20.20.60; -; 1. DR InterPro; IPR018523; Isocitrate_lyase_ph_CS. DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. DR SUPFAM; SSF51621; SSF51621; 1. DR PROSITE; PS00161; ISOCITRATE_LYASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12152.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 288 AA; 31755 MW; 87671FFA4A2400E7 CRC64; MKNLRSMLKS NKPLIIPGVY DAIGAKIAEK VGFDAMFQTG YGTSATLFGM PDYGFIGATE TVDNARRICR AVKVPVIVDS DTGYGNALSV WKLVKELESA GASGIFLEDQ RWPKRCGHMQ GKEVVSQEEY TEKLGAAIDA RESKDFIIVA RTDARATEGL DAAIERGLQN KKTGADAVFV EAPRSIEEMK QIGKSIKAPL VANMIEGGAT PISSAQDLHK MGFKIILYPL SVLFANTFAT MNILQELKKT GTTSKYKNKV VNFDQFNDLV ELSKFRKMEK KYGFSKRE // ID A9A362_NITMS Unreviewed; 402 AA. AC A9A362; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 44. DE SubName: Full=Glycosyl transferase family 2 {ECO:0000313|EMBL:ABX12491.1}; GN OrderedLocusNames=Nmar_0595 {ECO:0000313|EMBL:ABX12491.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12491.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12491.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12491.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12491.1; -; Genomic_DNA. DR ProteinModelPortal; A9A362; -. DR STRING; 436308.Nmar_0595; -. DR CAZy; GT2; Glycosyltransferase Family 2. DR EnsemblBacteria; ABX12491; ABX12491; Nmar_0595. DR KEGG; nmr:Nmar_0595; -. DR eggNOG; arCOG01390; Archaea. DR eggNOG; ENOG410XT5C; LUCA. DR HOGENOM; HOG000108280; -. DR OMA; FRISPLW; -. DR BioCyc; NMAR436308:GI3J-618-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR001173; Glyco_trans_2-like. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00535; Glycos_transf_2; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12491.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 291 315 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 321 343 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 355 375 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 54 225 Glyco_trans_2-like. FT {ECO:0000259|Pfam:PF00535}. SQ SEQUENCE 402 AA; 44992 MW; 411BB76546EA58D1 CRC64; MEIAFDVLNY SLSAILIGIC GAWLFLIKSM VDSFRLTPYL DRFENTSKGF PKVSIILPAR NEEEFLGKCL DSLIDQDYKD YEIIVIDDSS EDSTGKIISE YAKKNSKVIH VSAREKPEGW MGKNWACMEG YRKATGELLL FTDADTTHKK NVISLAVSHL LSFELDALST IPKMLTFDFW TNITLPMIST FLHTRFSALN VNNPSKKTGY FFGSFFILKK STYEQVGMHE GVKHEIIEDG ALGKKVKEAG YKMKMVRGEH LVEAVWARDK STLWNALKRL MIPLYLQSGK IAIGIFFAVL FLLFVPFPIF ATSILLPAET LSSKILCATA FAASLLIYIG AVIEAKIGLE LKFRYAIFAP LGSLVVVLGF LSGLLQAKKT SSVTWRGRSY SMKDHSQSSI SV // ID A9A4G4_NITMS Unreviewed; 107 AA. AC A9A4G4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12653.1}; GN OrderedLocusNames=Nmar_0757 {ECO:0000313|EMBL:ABX12653.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12653.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12653.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12653.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12653.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0757; -. DR EnsemblBacteria; ABX12653; ABX12653; Nmar_0757. DR KEGG; nmr:Nmar_0757; -. DR eggNOG; ENOG4102UA8; Archaea. DR eggNOG; ENOG4110ZJM; LUCA. DR BioCyc; NMAR436308:GI3J-783-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 107 AA; 12623 MW; D31CB5A56270CBBF CRC64; MFEYDKHYRN CQQFDKPFIK AKINPHHGNY FVQIDLMTCN YKFSKNDEEE LKKMANNEND FLELNSESKL EGFSITSELA WFDGVSLKNL DSFCNALYDL TQNSKSN // ID A9A4S8_NITMS Unreviewed; 139 AA. AC A9A4S8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13382.1}; GN OrderedLocusNames=Nmar_1486 {ECO:0000313|EMBL:ABX13382.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13382.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13382.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13382.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13382.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4S8; -. DR STRING; 436308.Nmar_1486; -. DR EnsemblBacteria; ABX13382; ABX13382; Nmar_1486. DR KEGG; nmr:Nmar_1486; -. DR eggNOG; arCOG08640; Archaea. DR eggNOG; COG2947; LUCA. DR HOGENOM; HOG000263533; -. DR OMA; WDQQVAK; -. DR BioCyc; NMAR436308:GI3J-1524-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.590.10; -; 1. DR InterPro; IPR002740; EVE_domain. DR InterPro; IPR015947; PUA-like_domain. DR Pfam; PF01878; EVE; 1. DR SUPFAM; SSF88697; SSF88697; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 135 EVE. {ECO:0000259|Pfam:PF01878}. SQ SEQUENCE 139 AA; 16315 MW; F4582A26921C1441 CRC64; MANYWLAKQE PSGPRGYNFE QLKKDKTTVW DGVHNNLALK HMREMKPGDL VLFYHTGDER QAVGIMQVTS KPYSNPKEDV ERFIVVDVKY KKALKRPVTL DEMKQNKKFK DWELIRISRL SVMPVPKPIW DEILKISQA // ID A9A547_NITMS Unreviewed; 158 AA. AC A9A547; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11956.1}; GN OrderedLocusNames=Nmar_0056 {ECO:0000313|EMBL:ABX11956.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11956.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11956.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11956.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11956.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0056; -. DR EnsemblBacteria; ABX11956; ABX11956; Nmar_0056. DR KEGG; nmr:Nmar_0056; -. DR eggNOG; arCOG10415; Archaea. DR eggNOG; ENOG41111I0; LUCA. DR HOGENOM; HOG000110632; -. DR OMA; FIFEDIE; -. DR BioCyc; NMAR436308:GI3J-56-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 63 82 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 112 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 124 147 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 158 AA; 17872 MW; EF163DF412669F07 CRC64; MAKFKKKKSK PTPEPEDSKK ETPQEEPVDI PEIEKSEPAP EPSKEPQMSE AEKSDKDRKL NKLFWMRVAL AVIAGTAATF IFEDIEGEDR RWASIGFMII VFFATIIVAK GMKMQLPSSD RKKIVTQAIG SYVFLYLFTW IVTYTLVHSG NISTGINI // ID A9A147_NITMS Unreviewed; 103 AA. AC A9A147; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 42. DE SubName: Full=CutA1 divalent ion tolerance protein {ECO:0000313|EMBL:ABX12008.1}; GN OrderedLocusNames=Nmar_0108 {ECO:0000313|EMBL:ABX12008.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12008.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12008.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12008.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12008.1; -; Genomic_DNA. DR ProteinModelPortal; A9A147; -. DR EnsemblBacteria; ABX12008; ABX12008; Nmar_0108. DR KEGG; nmr:Nmar_0108; -. DR eggNOG; arCOG04231; Archaea. DR eggNOG; COG1324; LUCA. DR HOGENOM; HOG000222826; -. DR KO; K03926; -. DR OMA; KTEVGAF; -. DR BioCyc; NMAR436308:GI3J-111-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010038; P:response to metal ion; IEA:InterPro. DR InterPro; IPR004323; Ion_tolerance_CutA. DR InterPro; IPR011322; N-reg_PII-like_a/b. DR PANTHER; PTHR23419; PTHR23419; 1. DR Pfam; PF03091; CutA1; 1. DR SUPFAM; SSF54913; SSF54913; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 103 AA; 11812 MW; A5AA7F376D74F5C5 CRC64; MKPAIIISTY PDKKSITKIA KIFVKNKTVA CVNISKIDSI YSWNKKIENT SEYIAIFKTT SKNTKLLKEK IKETHPYNVP EIAEIDVTSI NKSYLDWLID STN // ID A9A5J9_NITMS Unreviewed; 112 AA. AC A9A5J9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12710.1}; GN OrderedLocusNames=Nmar_0814 {ECO:0000313|EMBL:ABX12710.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12710.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12710.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12710.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12710.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0814; -. DR EnsemblBacteria; ABX12710; ABX12710; Nmar_0814. DR KEGG; nmr:Nmar_0814; -. DR BioCyc; NMAR436308:GI3J-841-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 26 48 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 78 98 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 112 AA; 13106 MW; B694535632EB4E18 CRC64; MTWQTIFCFI PIADIVASYR VKRFRWYMAI MLAWAGISTV IQMVVYPFEE DSIYSAKVFS EETGFNWGYA LLGENTELGI SLIIVHSAIT YAIAVYMIRR WSKRWNLQFN GQ // ID A9A1L8_NITMS Unreviewed; 623 AA. AC A9A1L8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13533.1}; GN OrderedLocusNames=Nmar_1637 {ECO:0000313|EMBL:ABX13533.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13533.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13533.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13533.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13533.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1L8; -. DR STRING; 436308.Nmar_1637; -. DR EnsemblBacteria; ABX13533; ABX13533; Nmar_1637. DR KEGG; nmr:Nmar_1637; -. DR eggNOG; ENOG4102U0C; Archaea. DR eggNOG; ENOG410XV93; LUCA. DR BioCyc; NMAR436308:GI3J-1682-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 455 530 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 623 AA; 69224 MW; F4D5D3A1CB9D9245 CRC64; MNHKLFLGAL YLLLIFGSTQ IAYGGGSGSE ESDIIFINQN YFKVQLETSP SILEGNEEHV TFDITTINDD TGQVVLGVEH KVEIFDGQGN LIVEFDAYSP DEKLRTLIIP SSNVNFSGET AENDAWLASN DSPLTIEAPL FLEGGLIDVQ MTLLSIENEP VSETETPFQI MFTMGEFIPF SIDIDDVTHD LMFATYFDKI DNFHYDQRDK KLTAQMLFDW NEDFIESIPF VHAEYYIPKT VDIFENHDIM LTVNDISYFG TIDRSGNEEI VVHFLLSSKK LLKMIDENPP ELNDKMIFGI QSGKLRDVQK SDASLENGDK VIQLSSEEDW KFHLSLTPKG KINPGNDVTM HIEFHDPISN VIIQQNVYDL DVFLNGRIIE SKQGLEAHDG TDSVKINFDQ VGAALVRISN VNNFDTSGEF SFKVSEPKEE LIGDHFVDIG IGTSLPGCET DNSCYLPASL TIEPNQIVLW DNKDSSAHTV TSGTPDEGSS GIFDSGVVAA GEKFSFKFEE NGTFDYYCTL HPWMIGSVTV GETKPAVPAW IKNNAGWWAE GAIDDDAFVQ GIQFLIKENV LLIPATSSGE NSGSNEIPAW IKNNAGWWAE GAIDDDAFVQ GIQFLITNGI LQV // ID A9A3H5_NITMS Unreviewed; 329 AA. AC A9A3H5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Nitroreductase {ECO:0000313|EMBL:ABX12907.1}; GN OrderedLocusNames=Nmar_1011 {ECO:0000313|EMBL:ABX12907.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12907.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12907.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12907.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12907.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3H5; -. DR STRING; 436308.Nmar_1011; -. DR EnsemblBacteria; ABX12907; ABX12907; Nmar_1011. DR KEGG; nmr:Nmar_1011; -. DR eggNOG; arCOG00288; Archaea. DR eggNOG; COG0778; LUCA. DR BioCyc; NMAR436308:GI3J-1039-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.109.10; -; 1. DR InterPro; IPR029479; Nitroreductase. DR InterPro; IPR000415; Nitroreductase-like. DR Pfam; PF00881; Nitroreductase; 2. DR SUPFAM; SSF55469; SSF55469; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 263 284 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 168 226 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. FT DOMAIN 230 308 Nitroreductase. FT {ECO:0000259|Pfam:PF00881}. SQ SEQUENCE 329 AA; 37390 MW; AE46ECF7FA070EE2 CRC64; MFDISSVVKY KAIEPSYTTK DGCRIVWEGV DEDDTDVVIL NKNELSNLVE LFKKNSVGEV ELEDQSSYIR VNSDVTQFNL SNHGLLEVDT NQIQEDVLEY AKVPHEPQYV YIGTKEFYPS IWIRDDDKVQ REISIKDPKK SLIQAILSSE PEKIRQDLSP TDLFRVFATR RSTRKFDKTK VEDWKIDKIL SAADVAPTAG NFQGFQVFLI KNKKTKEALV EAANKQPYVN APVVLVFCTD PSRVKLKFPP EILDKFSLQD ATIAATFSLL AASGVGLSTI WIGMFDEEKV KKILGTDLRP SSILCIGYPD KKKPPKSRRH LKELIRVIE // ID A9A4D4_NITMS Unreviewed; 204 AA. AC A9A4D4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12623.1}; GN OrderedLocusNames=Nmar_0727 {ECO:0000313|EMBL:ABX12623.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12623.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12623.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12623.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12623.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0727; -. DR EnsemblBacteria; ABX12623; ABX12623; Nmar_0727. DR KEGG; nmr:Nmar_0727; -. DR eggNOG; arCOG08797; Archaea. DR eggNOG; ENOG41111F9; LUCA. DR OMA; WARILRV; -. DR BioCyc; NMAR436308:GI3J-753-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 204 AA; 23396 MW; 4C1CCA89D0BB6F2C CRC64; MRKLGTIDLE VLHLAVKENG TFDETNLENS ELKRLGVGKI LDTLGSLKDR KFISLNSNGS FSITPVAREI LWGEKIPVWA KILRLLQIKS CNIDQIIDIL QVSETEILQE IEKLRQNQFV LMSPQRQDEK IIKVYEILPE GVEEIDKTET DGFDKIKFGE IKPEIEILSL IDDVVKEIQD SQIELEKKTN IIEKLSKLKT KLNV // ID A9A2H9_NITMS Unreviewed; 551 AA. AC A9A2H9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 55. DE SubName: Full=2-alkenal reductase {ECO:0000313|EMBL:ABX13218.1}; DE EC=1.3.1.74 {ECO:0000313|EMBL:ABX13218.1}; GN OrderedLocusNames=Nmar_1322 {ECO:0000313|EMBL:ABX13218.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13218.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13218.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13218.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13218.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H9; -. DR STRING; 436308.Nmar_1322; -. DR EnsemblBacteria; ABX13218; ABX13218; Nmar_1322. DR KEGG; nmr:Nmar_1322; -. DR eggNOG; arCOG08649; Archaea. DR eggNOG; COG3569; LUCA. DR HOGENOM; HOG000105469; -. DR KO; K03163; -. DR OMA; VMDNHKE; -. DR BioCyc; NMAR436308:GI3J-1355-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005694; C:chromosome; IEA:InterPro. DR GO; GO:0032440; F:2-alkenal reductase [NAD(P)] activity; IEA:UniProtKB-EC. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003917; F:DNA topoisomerase type I activity; IEA:InterPro. DR GO; GO:0003918; F:DNA topoisomerase type II (ATP-hydrolyzing) activity; IEA:InterPro. DR GO; GO:0006265; P:DNA topological change; IEA:InterPro. DR Gene3D; 1.10.10.41; -; 1. DR Gene3D; 1.10.132.10; -; 1. DR Gene3D; 2.170.11.10; -; 2. DR Gene3D; 3.90.15.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013034; DNA_topo_domain1. DR InterPro; IPR001631; TopoI. DR InterPro; IPR025834; TopoI_C_dom. DR InterPro; IPR014711; TopoI_cat_a-hlx-sub_euk. DR InterPro; IPR014727; TopoI_cat_a/b-sub_euk. DR InterPro; IPR013500; TopoI_cat_euk. DR InterPro; IPR008336; TopoI_DNA-bd_euk. DR InterPro; IPR013030; TopoI_DNA-bd_mixed-a/b_euk. DR InterPro; IPR013499; TopoI_euk. DR Pfam; PF14370; Topo_C_assoc; 1. DR Pfam; PF01028; Topoisom_I; 1. DR Pfam; PF02919; Topoisom_I_N; 1. DR PRINTS; PR00416; EUTPISMRASEI. DR SMART; SM00435; TOPEUc; 1. DR SUPFAM; SSF56349; SSF56349; 2. DR SUPFAM; SSF56741; SSF56741; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX13218.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 146 522 TOPEUc. {ECO:0000259|SMART:SM00435}. FT COILED 458 496 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 551 AA; 64617 MW; 8A6EA5D149A57E86 CRC64; MKWKTLQHKG ILFPPAYEAQ GIKIKIKGEK VDLNLDQEEM IYQWAKKKDT PYAQDKVFQK NFTADFAKTL DSKFKKISYE DIDFSDAYKL VDKEKDLKEM MTKEEKKAIA AKRKELREEL KSKYGVAVMD GKEVEVGNYM AEPPGIFIGR GEHPLRGRWK PRVTAKDVTL NLGKEAKVPE GKWGKIIHDK DSMWLASWMD FLTQKRKYVW LSDSSDLKQG RDKEKYEKAV KLEKEIEKIK KAMVKDMKDS KKNNVATACY LIYKTAMRVG DEKDEDEADT VGATTLRKEH IKITSDTIEF DFLGKDSVRW QETLKVVGDD KQFQENLKKL IEKKKPSEEI FHDITSRDVN KYLSGIVKGV TAKVFRTYQA TTVVKNYLVN HDNIKGKSDN EKLYHAKLAN LEAAIMCNHK RTIPKTFEQS LQKKKDTLKK REREKAWEKT QQTLKKVESS EPKTDTQKKN KEKRIKTLNE QIKKQKQKHK ERIEKLKLQV DLSEKTRDYN LGTSLRNYID PRVFKAWTDE VGAEWEKLYT SALQKKFLWV KNENTKWKEI K // ID A9A3X4_NITMS Unreviewed; 246 AA. AC A9A3X4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13674.1}; GN OrderedLocusNames=Nmar_1778 {ECO:0000313|EMBL:ABX13674.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13674.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13674.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13674.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13674.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1778; -. DR EnsemblBacteria; ABX13674; ABX13674; Nmar_1778. DR KEGG; nmr:Nmar_1778; -. DR eggNOG; arCOG08685; Archaea. DR eggNOG; ENOG41111FE; LUCA. DR BioCyc; NMAR436308:GI3J-1825-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009405; P:pathogenesis; IEA:InterPro. DR Gene3D; 1.20.190.10; -; 1. DR InterPro; IPR005639; Endotoxin_N. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 246 AA; 26643 MW; 4403C28370D802F6 CRC64; MFIKLGIIAG IIVLGGMIFS NEIDSFFPTT SATITDSLTN DISNIGTKAT NAVENRIDES IDKIVDKTSD AITNEIHETG DKISNEVSDV KETSQNIIHE KVSNFNPVES IQNLFTGSSS NKQKSSNEIS TLNPPSSSSQ VITNSSPLVY ETLSLSTKQM SDENIILQYS DSSGKTNSVN VILRSEQEEI FSGTFFSSNF ETTVNDAAGI PYFIDMIVEH EEYGTVTSSV FNPGDSSDSN ISGIFS // ID A9A1I7_NITMS Unreviewed; 107 AA. AC A9A1I7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13166.1}; GN OrderedLocusNames=Nmar_1270 {ECO:0000313|EMBL:ABX13166.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13166.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13166.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13166.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13166.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1270; -. DR EnsemblBacteria; ABX13166; ABX13166; Nmar_1270. DR KEGG; nmr:Nmar_1270; -. DR eggNOG; arCOG09609; Archaea. DR eggNOG; ENOG41128BK; LUCA. DR BioCyc; NMAR436308:GI3J-1303-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 107 AA; 12835 MW; 2EF907A93EB23A19 CRC64; MSKILYSDKH IQIFEDKIRF KSWCLPWGKK DVKLSHVKKI SEKKMGLFSG RLRISGSNNF RDWFHFDATR PTKKKAIVLE TDFHVYKRLW ITPEKHNTAF NIIKKLI // ID A9A1W7_NITMS Unreviewed; 304 AA. AC A9A1W7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ABX12088.1}; GN OrderedLocusNames=Nmar_0192 {ECO:0000313|EMBL:ABX12088.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12088.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12088.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12088.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-IV pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU004106}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12088.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1W7; -. DR STRING; 436308.Nmar_0192; -. DR EnsemblBacteria; ABX12088; ABX12088; Nmar_0192. DR KEGG; nmr:Nmar_0192; -. DR eggNOG; arCOG02297; Archaea. DR eggNOG; COG0115; LUCA. DR HOGENOM; HOG000276706; -. DR KO; K00826; -. DR OMA; NITMTQA; -. DR BioCyc; NMAR436308:GI3J-195-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004084; F:branched-chain-amino-acid transaminase activity; IEA:InterPro. DR GO; GO:0009081; P:branched-chain amino acid metabolic process; IEA:InterPro. DR InterPro; IPR001544; Aminotrans_IV. DR InterPro; IPR018300; Aminotrans_IV_CS. DR InterPro; IPR005785; B_amino_transI. DR PANTHER; PTHR11825; PTHR11825; 1. DR Pfam; PF01063; Aminotran_4; 1. DR SUPFAM; SSF56752; SSF56752; 1. DR TIGRFAMs; TIGR01122; ilvE_I; 1. DR PROSITE; PS00770; AA_TRANSFER_CLASS_4; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX12088.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12088.1}. SQ SEQUENCE 304 AA; 33818 MW; B31524EAF0677899 CRC64; MKEVGKIWMN GKLVPFKDAK VHVLTHALHY STSIFEGIRC YNTPNGSAIF RLPEHVDRFF KSAKLYSMKM QFSKKEISDG IIKTVKASGL KECYIRPLAY YGYGTMGLTP TQNKVDASIS CWEWKMGESK AGKFSGAKCK VSSWIKIDSR SQPTQAKAAS NYANAALARM EALENGYDEA IMLNWHGKVA EGSAENIFVV KDDIIQTPPL SAGGLEGITR DSVIQIIEEN GGFVIERDLE RDDLYAADEI FMTGTAAEVK SVTQIDKVKI GNGKMGHITK ALQKSFTDVV MGKDERFLPW LTYI // ID A9A4Z3_NITMS Unreviewed; 481 AA. AC A9A4Z3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE RecName: Full=DNA polymerase II small subunit {ECO:0000256|HAMAP-Rule:MF_00325}; DE Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00325}; DE EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00325}; GN Name=polB {ECO:0000256|HAMAP-Rule:MF_00325}; GN OrderedLocusNames=Nmar_0002 {ECO:0000313|EMBL:ABX11902.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11902.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11902.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11902.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Possesses two activities: a DNA synthesis (polymerase) CC and an exonucleolytic activity that degrades single-stranded DNA CC in the 3' to 5' direction. Has a template-primer preference which CC is characteristic of a replicative DNA polymerase. CC {ECO:0000256|HAMAP-Rule:MF_00325}. CC -!- CATALYTIC ACTIVITY: Degradation of single-stranded DNA. It acts CC progressively in a 3'- to 5'-direction, releasing nucleoside 5'- CC phosphates. {ECO:0000256|HAMAP-Rule:MF_00325}. CC -!- CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = CC diphosphate + DNA(n+1). {ECO:0000256|HAMAP-Rule:MF_00325}. CC -!- SUBUNIT: Heterodimer of a large subunit and a small subunit. CC {ECO:0000256|HAMAP-Rule:MF_00325}. CC -!- SIMILARITY: Belongs to the DNA polymerase delta/II small subunit CC family. {ECO:0000256|HAMAP-Rule:MF_00325}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11902.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0002; -. DR EnsemblBacteria; ABX11902; ABX11902; Nmar_0002. DR KEGG; nmr:Nmar_0002; -. DR eggNOG; arCOG04455; Archaea. DR eggNOG; COG1311; LUCA. DR HOGENOM; HOG000226289; -. DR KO; K02323; -. DR OMA; IYEQYDV; -. DR BioCyc; NMAR436308:GI3J-2-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000738; P:DNA catabolic process, exonucleolytic; IEA:UniProtKB-HAMAP. DR GO; GO:0006261; P:DNA-dependent DNA replication; IEA:UniProtKB-HAMAP. DR Gene3D; 3.60.21.10; -; 2. DR HAMAP; MF_00325; DNApol_II_A_arch; 1. DR InterPro; IPR007185; DNA_pol_alpha/epsilon_bsu. DR InterPro; IPR024826; DNA_pol_delta/II_ssu. DR InterPro; IPR029052; Metallo-depent_PP-like. DR InterPro; IPR011149; Pol2_small_arc. DR PANTHER; PTHR10416; PTHR10416; 1. DR Pfam; PF04042; DNA_pol_E_B; 1. DR PIRSF; PIRSF000803; Arc_Pol2_small; 1. DR SUPFAM; SSF56300; SSF56300; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA replication {ECO:0000256|HAMAP-Rule:MF_00325}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00325}; KW DNA-directed DNA polymerase {ECO:0000256|HAMAP-Rule:MF_00325, KW ECO:0000313|EMBL:ABX11902.1}; KW Exonuclease {ECO:0000256|HAMAP-Rule:MF_00325}; KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00325}; KW Multifunctional enzyme {ECO:0000256|HAMAP-Rule:MF_00325}; KW Nuclease {ECO:0000256|HAMAP-Rule:MF_00325}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00325, KW ECO:0000313|EMBL:ABX11902.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00325, KW ECO:0000313|EMBL:ABX11902.1}. FT DOMAIN 219 417 DNA_pol_E_B. {ECO:0000259|Pfam:PF04042}. SQ SEQUENCE 481 AA; 54285 MW; 597CCBAB98D9A9A5 CRC64; MKKELSFALN YALNKGFQIH PNAFKILENV DVKKLEKIIK EIVREKTKQK LFQINQDDLE TYLGIKDDPS LENEVKVLLD PTDKITTGEG VKGYNALFSS RFNKLKRIIS DRPEARMLKS LTFVKNERSE DDMYVCGLVT SRNSERNVTK LVLEDPSGSF EGIIFDTELQ KTADTLLVDQ FVMARVSVGK NSGFIIKDLI FPDIPDQATN KSESEAYAVF LSDLHIGSKY FMEEELTEFF SWISSPDPTA KKIRFILIGG DMVDGVGIYP NQNKELVCQT IEEQLKKVES LIDQIPKNIK IIIMPGNHDP GRRALPQPAI PKKYNSGLWD RENVIMVGNP AVVSLNGVKV MMFHGQSIDD IVKTTPGLSY DKPTNVMKHL LRARHLSPIY GSQTPIAPEM QDLMVIEDIP DIFHVGHVHK AQLDMYKGIL LVNSGSWQKQ TPFQASVGMT PNPGIALLVN LKTFQVFHQN YNSNLDNILQ S // ID A9A5Z3_NITMS Unreviewed; 86 AA. AC A9A5Z3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13471.1}; GN OrderedLocusNames=Nmar_1575 {ECO:0000313|EMBL:ABX13471.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13471.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13471.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13471.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13471.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z3; -. DR SMR; A9A5Z3; 1-84. DR STRING; 436308.Nmar_1575; -. DR EnsemblBacteria; ABX13471; ABX13471; Nmar_1575. DR KEGG; nmr:Nmar_1575; -. DR eggNOG; arCOG08720; Archaea. DR eggNOG; ENOG411244G; LUCA. DR HOGENOM; HOG000107657; -. DR OMA; CHSEMAN; -. DR BioCyc; NMAR436308:GI3J-1619-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.10.510.10; -; 1. DR InterPro; IPR018592; DUF2024. DR InterPro; IPR023122; NE1680-like_domain. DR Pfam; PF09630; DUF2024; 1. DR SUPFAM; SSF160766; SSF160766; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 86 AA; 9885 MW; 4DC5E79EE942E158 CRC64; MDFHVFDTYV KAKDGHTMHF DVVTDNSNVE KAISYAKEWL NTIGEENSKV TTEECKFCHT QSVPEDIEIE IMTNGYFISK MEGCPE // ID A9A471_NITMS Unreviewed; 332 AA. AC A9A471; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 45. DE SubName: Full=Dehydrogenase (Flavoprotein)-like protein {ECO:0000313|EMBL:ABX12255.1}; GN OrderedLocusNames=Nmar_0359 {ECO:0000313|EMBL:ABX12255.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12255.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12255.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12255.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12255.1; -; Genomic_DNA. DR ProteinModelPortal; A9A471; -. DR STRING; 436308.Nmar_0359; -. DR EnsemblBacteria; ABX12255; ABX12255; Nmar_0359. DR KEGG; nmr:Nmar_0359; -. DR eggNOG; arCOG00570; Archaea. DR eggNOG; COG0644; LUCA. DR HOGENOM; HOG000105727; -. DR OMA; YAWAFPL; -. DR BioCyc; NMAR436308:GI3J-375-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 2. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR006905; Trp_halogenase. DR Pfam; PF04820; Trp_halogenase; 1. DR SUPFAM; SSF51905; SSF51905; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 332 AA; 38364 MW; 120AA5BDEAA03708 CRC64; MGMGVAGSYL MARLKDSEHD VTGYELNPKE RHDSICAWGT IKPILTEYCK KTGRDFNDFL IHDGKNMHVK MNNDVKFDIG LHGLCTYDKI GLIKDFIKDS KIIYGKPPSL EELEKEYDMI VDCTGFHRVY LPKLKEDFFL PTYEYKVEYE NGVPYDDFYI EPFPGMSGYF WYFPLGEKWA HIGAGDYNKN HIKATDDFLK KHGGKVLKTK GRPIRLATPD RCKPYYSGKV VGVGESIGTV YALLGEGIIP SMQCVELFLK NMNDFKAYEK AVEEHYKVYA KVFNFVRAKI KKDFNFFKSL PDFLAIFRYM KKNEDRFGMD IKIADLMKVA KA // ID A9A3I8_NITMS Unreviewed; 223 AA. AC A9A3I8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:ABX12920.1}; GN OrderedLocusNames=Nmar_1024 {ECO:0000313|EMBL:ABX12920.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12920.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12920.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12920.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12920.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3I8; -. DR STRING; 436308.Nmar_1024; -. DR EnsemblBacteria; ABX12920; ABX12920; Nmar_1024. DR KEGG; nmr:Nmar_1024; -. DR eggNOG; arCOG00349; Archaea. DR eggNOG; arCOG02846; Archaea. DR eggNOG; ENOG4110ZK3; LUCA. DR HOGENOM; HOG000106248; -. DR OMA; DFWKEYE; -. DR BioCyc; NMAR436308:GI3J-1055-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR Gene3D; 1.10.287.110; -; 1. DR InterPro; IPR001080; 3Fe4S_ferredoxin. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR001623; DnaJ_domain. DR Pfam; PF00226; DnaJ; 1. DR PRINTS; PR00352; 3FE4SFRDOXIN. DR PRINTS; PR00625; JDOMAIN. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 1. DR PROSITE; PS50076; DNAJ_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Stress response {ECO:0000313|EMBL:ABX12920.1}. FT DOMAIN 5 71 J. {ECO:0000259|PROSITE:PS50076}. FT DOMAIN 149 177 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 223 AA; 26094 MW; 1545CF425363C8E3 CRC64; MNTYQALKVL DVDSNSSQEE IKAAFRKKAL EHHPDKNKNK NEDLEFKKIT EAYEYLKKNH HQRNDVYHNV QSQSKPKSNF KRKPWGAPDD ETIPEQDWGK YTKEFEEGDP DFWKEYEKNF WEEYNARVRP DGRNGEYEKA KEPKKQPNLY VDVDKSLCIG CCSCEIIAPD VFQINKEKMM NPKSSVIDPK GAGVNKIMDA AMTCPTKAII VEDIDTKERM YPY // ID A9A314_NITMS Unreviewed; 89 AA. AC A9A314; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE RecName: Full=UPF0434 protein Nmar_0246 {ECO:0000256|HAMAP-Rule:MF_01187}; GN OrderedLocusNames=Nmar_0246 {ECO:0000313|EMBL:ABX12142.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12142.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12142.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12142.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the UPF0434 family. {ECO:0000256|HAMAP- CC Rule:MF_01187}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12142.1; -; Genomic_DNA. DR ProteinModelPortal; A9A314; -. DR STRING; 436308.Nmar_0246; -. DR EnsemblBacteria; ABX12142; ABX12142; Nmar_0246. DR KEGG; nmr:Nmar_0246; -. DR eggNOG; arCOG04124; Archaea. DR eggNOG; COG2835; LUCA. DR HOGENOM; HOG000227338; -. DR OMA; KLCCPFD; -. DR BioCyc; NMAR436308:GI3J-253-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR HAMAP; MF_01187; UPF0434; 1. DR InterPro; IPR005651; UPF0434/Trm112. DR Pfam; PF03966; Trm112p; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 89 AA; 10532 MW; 4BBB0EE924EBEF88 CRC64; MNKTMTDILA CPIDKNHPLE LFEINEKSDI VSEGVLFCPK CTRFYPIIEE IPIMLPDELR DKKQEMEFLE NFKDKLPEKI ITKAKPWHL // ID A9A3A6_NITMS Unreviewed; 220 AA. AC A9A3A6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=DSBA oxidoreductase {ECO:0000313|EMBL:ABX12535.1}; GN OrderedLocusNames=Nmar_0639 {ECO:0000313|EMBL:ABX12535.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12535.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12535.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12535.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12535.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3A6; -. DR STRING; 436308.Nmar_0639; -. DR EnsemblBacteria; ABX12535; ABX12535; Nmar_0639. DR KEGG; nmr:Nmar_0639; -. DR eggNOG; arCOG02868; Archaea. DR eggNOG; COG1651; LUCA. DR HOGENOM; HOG000105582; -. DR OMA; KFATCLD; -. DR BioCyc; NMAR436308:GI3J-664-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13462; Thioredoxin_4; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 220 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 220 AA; 24152 MW; 29A6E8E480A1EFA8 CRC64; MNKKGVIIGV VAIAIIAGVA ASLSATPAET VNLDMTRTHG TISTAMGSPI LGDPNAPITI VEFGDYQCHQ CYNWFHNTKP TITRDYIDTG KANLVFVDMA FLGRDSSPAA QATYCAEDQG MYWEYHDMLY NAQESKIDGG WANNERLKAF AFSMGLDMEL FESCLDSGKY SKRVQYNTQQ ARDHNVRGTP GFFIVGPDGQ QQIGGAQPFS VFKQVLDPMV // ID A9A319_NITMS Unreviewed; 126 AA. AC A9A319; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX12147.1}; GN OrderedLocusNames=Nmar_0251 {ECO:0000313|EMBL:ABX12147.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12147.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12147.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12147.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12147.1; -; Genomic_DNA. DR ProteinModelPortal; A9A319; -. DR STRING; 436308.Nmar_0251; -. DR EnsemblBacteria; ABX12147; ABX12147; Nmar_0251. DR KEGG; nmr:Nmar_0251; -. DR eggNOG; arCOG02391; Archaea. DR eggNOG; COG0784; LUCA. DR HOGENOM; HOG000034820; -. DR KO; K03413; -. DR OMA; EVSTITH; -. DR BioCyc; NMAR436308:GI3J-258-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 119 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 126 AA; 14018 MW; 62890BD44C051277 CRC64; MAITAIVAED DEANLELFSE ILELNNVTIL SKVVNGKEAV DSFESQRPDI VFLDIMMPDF DGLYALENIR KIDPSAKVVM VTADTSSESE AILEKLQPNA VIHKPYEVST ITHIIEDKLD LKIQSN // ID A9A4J9_NITMS Unreviewed; 100 AA. AC A9A4J9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12977.1}; GN OrderedLocusNames=Nmar_1081 {ECO:0000313|EMBL:ABX12977.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12977.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12977.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12977.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12977.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1081; -. DR EnsemblBacteria; ABX12977; ABX12977; Nmar_1081. DR KEGG; nmr:Nmar_1081; -. DR eggNOG; arCOG08700; Archaea. DR eggNOG; ENOG41110WN; LUCA. DR HOGENOM; HOG000106997; -. DR OMA; VEPEGMI; -. DR BioCyc; NMAR436308:GI3J-1112-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 100 AA; 11132 MW; 8355AA11A9EDE4F7 CRC64; MTEIDTQKDF YLFLHGKMDL KQKATDVLIA KGCSEEKITM GAPTKVGNVG DYMVQLWPPG PAPNQIKIQQ ITKVEEVEPE GMIGLWKGVS KEDVESIPLE // ID A9A3D6_NITMS Unreviewed; 258 AA. AC A9A3D6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12868.1}; GN OrderedLocusNames=Nmar_0972 {ECO:0000313|EMBL:ABX12868.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12868.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12868.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12868.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12868.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0972; -. DR EnsemblBacteria; ABX12868; ABX12868; Nmar_0972. DR KEGG; nmr:Nmar_0972; -. DR eggNOG; arCOG01766; Archaea. DR eggNOG; COG2430; LUCA. DR KO; K09149; -. DR BioCyc; NMAR436308:GI3J-1000-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR007366; DUF432. DR Pfam; PF04254; DUF432; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 258 AA; 29170 MW; D0E1AF13E90F43CA CRC64; MCEIPCFDMS SDQEQNFLNY GIYTITDDVE FNFPGTEIKF KKLSENAFLY QKNDLTEKIV EKNIPSPSGT IQVEICPIRP LNYPARRTDY VYLDFTTPVF LPSGSSVVIN ALCQIEIGIF VIHDSTKDSL DWFDCNLDDS RFALYGAPDS GVLCKYSKSP IVSSDIDSDP YENASIQITI KNELSDGRSV RRVVFRATAF SLYYKDNKAK FDNATAVLKK KLALELIDVS AEKIQTDWQE STTYEISSTV KHSEMGVD // ID A9A4R3_NITMS Unreviewed; 120 AA. AC A9A4R3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=CMP/dCMP deaminase zinc-binding {ECO:0000313|EMBL:ABX13367.1}; GN OrderedLocusNames=Nmar_1471 {ECO:0000313|EMBL:ABX13367.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13367.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13367.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13367.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13367.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4R3; -. DR STRING; 436308.Nmar_1471; -. DR EnsemblBacteria; ABX13367; ABX13367; Nmar_1471. DR KEGG; nmr:Nmar_1471; -. DR eggNOG; arCOG04173; Archaea. DR eggNOG; COG0295; LUCA. DR HOGENOM; HOG000014707; -. DR KO; K01489; -. DR BioCyc; NMAR436308:GI3J-1508-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR InterPro; IPR016192; APOBEC/CMP_deaminase_Zn-bd. DR InterPro; IPR002125; CMP_dCMP_Zn-bd. DR InterPro; IPR016193; Cytidine_deaminase-like. DR Pfam; PF00383; dCMP_cyt_deam_1; 1. DR SUPFAM; SSF53927; SSF53927; 1. DR PROSITE; PS00903; CYT_DCMP_DEAMINASES_1; 1. DR PROSITE; PS51747; CYT_DCMP_DEAMINASES_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 120 CMP/dCMP-type deaminase. FT {ECO:0000259|PROSITE:PS51747}. SQ SEQUENCE 120 AA; 12958 MW; 7DB7E45C57D92704 CRC64; MSEIAWNSHS NARVLGKTQV GAAVVSGEGK IFSGCNIEHK FRSHDIHAEV SAISSLVSSG CTKLTAILVV AQRTQFTPCG SCMDWIFELG GSECVVGYQN EKGGDIKKFL ARDLMPHYPI // ID A9A1S7_NITMS Unreviewed; 442 AA. AC A9A1S7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 50. DE SubName: Full=Aminotransferase class-III {ECO:0000313|EMBL:ABX12048.1}; GN OrderedLocusNames=Nmar_0148 {ECO:0000313|EMBL:ABX12048.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12048.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12048.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12048.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU003560}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12048.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1S7; -. DR STRING; 436308.Nmar_0148; -. DR EnsemblBacteria; ABX12048; ABX12048; Nmar_0148. DR KEGG; nmr:Nmar_0148; -. DR eggNOG; arCOG00918; Archaea. DR eggNOG; COG0001; LUCA. DR HOGENOM; HOG000020210; -. DR KO; K01845; -. DR OMA; DWFIGST; -. DR BioCyc; NMAR436308:GI3J-151-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX12048.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU003560}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12048.1}. SQ SEQUENCE 442 AA; 49464 MW; 72E7295DEF941B53 CRC64; MTNVLHSLDN SNNLKERARK VIPHLTGTFS RAAPSYVEGV FPVYIQSGNG SHFTDVDQNE YIDYLMGLGP ITLGYNYEPV NRAIISQLND GILFSLPHPI EVELSEKVCE IIPHAEMTKF EKSGSNAVTG AVRAARAFTK NEKIAYCGSG GVWHDWQAAM VSRDDGVPKF NSELIKLFDY NDADGLEQIF DDNPNEIAAI VLEPTMYEKP ENDFLKKVRK IATQNNSLLI LDEIVTGFRF DLAGAQKYFD IKGDLVCFGK GMGNGLPISA ITGPSEYMKI FDKLWVSSTN NSETLSLAGT KAVISEMQEK NTISHCWKIG ESLLEGWNKI VEKFDLDAKM SGYPIRMHLK CFDSKHQESL TMKSLLLQEM VKNGVFMSVL GATFISYSHS LEDVQKTLSG LETVCEFISK NVKNDNYLEF LEGELPKTIW SMKLSPTKKK NQ // ID A9A445_NITMS Unreviewed; 1042 AA. AC A9A445; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12229.1}; GN OrderedLocusNames=Nmar_0333 {ECO:0000313|EMBL:ABX12229.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12229.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12229.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12229.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12229.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0333; -. DR EnsemblBacteria; ABX12229; ABX12229; Nmar_0333. DR KEGG; nmr:Nmar_0333; -. DR eggNOG; arCOG08778; Archaea. DR eggNOG; ENOG41111NG; LUCA. DR HOGENOM; HOG000109436; -. DR OMA; RDSARWW; -. DR BioCyc; NMAR436308:GI3J-348-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 1042 AA; 112614 MW; EAFA9138270A8991 CRC64; MNADASSNPN LSVSAENSEF GNLFAGSMVI EVVIRDSNIS DTDEGKGEPD VTINGKTLRM VQATDGNWYA YFANVDKAKI ADATVGLTGK GLDFGEFCSR DTTTSVFGIS LSETDGFAIP RPDSVTGSTN GNSSFSECTS SPTTTSNHNN VVRNAKSINT NSNISVGQIG LDADAWPLIQ LYSFDDVTIQ YNPGGPSQQV YLDYDEIENI SLGLDRELYP ENSEVFLTIN DIQLNQDPTD EDSWTFNVDS TVSTFYQAFD NSGNDDANGN AGLVNLVPHL SNLGFDDNGK LSLNLGNIME LKTNNDQPDS SIDADGVSNT FSKIVTLVEQ GPNSGIFSSS DSNDQSVIGI KDDAPRGQSG QITYNQKSIS VVSGSSTASV SFDDKPVLTI GNGDSLRPGT EYPVLLVDPD QNLNTGARDD LDVFRDSAII PTLTIGNPIT LENANSVEFH STSPTISGGD DSNSSVPDSN SAILLIDTSN VSNASYEMIS INLGISALSL ASSLIDSSES NTDGTNWINY DLRSLENELG LSDFSSTTFA LAFGTRDSTQ IVIVDDGDVS SSQGFIQIDN DDVENIKTKT GNVFLIIDFD SSDTVTISNE SNKLPMVFDF FSFGLKNDNS INNSIYRFEL EETRDNSSTF EGSLEYAVTN QLNIVDPNFI QTIQTIDDEI KIIITDRLID EEGIAISYAD LDSSGVTTTT TSKSDAATHS GNVSLDSTTF RFGQPVTITL SDSDLNLKSD TVEIYSVIND SNSANVDTVG KDGEILLEIK IKDIRYKRCT VNGVEHGGLA STGFTLVETG PSTGIFAGVF KMPSQICDKT GSKLIYTSGG SIDVRYHDSR DASGNANIFS LLDSKSSVSF YTPAKLSLEK MVLPMSDSKE IVLTGSIENH KRGIPLSIEL TNPDYTKQNF GASLSNSGGY RSVFTINPNT LLGTYFVSLS YDGKNLGTLS FDVVSENVPD WVKNNARWWS SNNISDDEFI GGIEHLIETG IISIDSSEQN STEQEIPDWI KNTARWWADD QIPEDEFLKS IQYLVKKGII QV // ID A9A2Y4_NITMS Unreviewed; 205 AA. AC A9A2Y4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE RecName: Full=Protein Nmar_0216 {ECO:0000256|HAMAP-Rule:MF_00645}; GN OrderedLocusNames=Nmar_0216 {ECO:0000313|EMBL:ABX12112.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12112.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12112.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12112.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 AMMECR1 domain. {ECO:0000256|HAMAP- CC Rule:MF_00645}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12112.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2Y4; -. DR STRING; 436308.Nmar_0216; -. DR EnsemblBacteria; ABX12112; ABX12112; Nmar_0216. DR KEGG; nmr:Nmar_0216; -. DR eggNOG; arCOG01336; Archaea. DR eggNOG; COG2078; LUCA. DR HOGENOM; HOG000223417; -. DR KO; K09141; -. DR OMA; TCWKAGL; -. DR BioCyc; NMAR436308:GI3J-221-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.700.20; -; 1. DR HAMAP; MF_00645; AMMECR1; 1. DR InterPro; IPR023473; AMMECR1. DR InterPro; IPR002733; AMMECR1_domain. DR InterPro; IPR027485; AMMECR1_N. DR InterPro; IPR027623; AmmeMemoSam_A. DR InterPro; IPR023472; Uncharacterised_MJ0810. DR PANTHER; PTHR13016; PTHR13016; 1. DR Pfam; PF01871; AMMECR1; 1. DR SUPFAM; SSF143447; SSF143447; 1. DR TIGRFAMs; TIGR04335; AmmeMemoSam_A; 1. DR TIGRFAMs; TIGR00296; TIGR00296; 1. DR PROSITE; PS51112; AMMECR1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 198 AMMECR1. {ECO:0000256|HAMAP- FT Rule:MF_00645, FT ECO:0000259|PROSITE:PS51112}. SQ SEQUENCE 205 AA; 23088 MW; 65C4E49686BFEF36 CRC64; MTNFQFLDSD GIELVKMARK VVIEFLKNNS KIIDSEFDSK FNFSSGVFVT INKENDLRGC IGYPTPVKKL CDGLVDAAIS AATKDPRFTP VTIDELDKIT FEVTVLTPPE EIKVEEYSEY LSEIKVGRDG LIVENSFSSG LLLPQVPTEY GWNEKEFLEY TCQKAGLNKD AWKEKSTTIL KFQGVIFKEE KPNGNILRES PNGLL // ID A9A466_NITMS Unreviewed; 145 AA. AC A9A466; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU004490}; GN Name=rps12 {ECO:0000256|HAMAP-Rule:MF_00403}; GN OrderedLocusNames=Nmar_0354 {ECO:0000313|EMBL:ABX12250.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12250.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12250.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12250.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: With S4 and S5 plays an important role in translational CC accuracy. Located at the interface of the 30S and 50S subunits. CC {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU004490}. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_00403, ECO:0000256|RuleBase:RU004490}. CC -!- SIMILARITY: Belongs to the ribosomal protein S12P family. CC {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003622}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12250.1; -; Genomic_DNA. DR ProteinModelPortal; A9A466; -. DR SMR; A9A466; 28-142. DR STRING; 436308.Nmar_0354; -. DR EnsemblBacteria; ABX12250; ABX12250; Nmar_0354. DR KEGG; nmr:Nmar_0354; -. DR eggNOG; arCOG04255; Archaea. DR eggNOG; COG0048; LUCA. DR HOGENOM; HOG000040064; -. DR KO; K02950; -. DR OMA; MPGKKSP; -. DR BioCyc; NMAR436308:GI3J-369-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.40.50.140; -; 1. DR HAMAP; MF_00403_A; Ribosomal_S12_A; 1. DR InterPro; IPR012340; NA-bd_OB-fold. DR InterPro; IPR022863; Ribosomal_S12. DR InterPro; IPR006032; Ribosomal_S12/S23. DR InterPro; IPR005680; Ribosomal_S23_euk/arc. DR PANTHER; PTHR11652; PTHR11652; 1. DR Pfam; PF00164; Ribosom_S12_S23; 1. DR PIRSF; PIRSF002133; Ribosomal_S12/S23; 1. DR SUPFAM; SSF50249; SSF50249; 1. DR TIGRFAMs; TIGR00982; uS12_E_A; 1. DR PROSITE; PS00055; RIBOSOMAL_S12; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00403, KW ECO:0000256|RuleBase:RU003622, ECO:0000313|EMBL:ABX12250.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00403, KW ECO:0000256|RuleBase:RU003622, ECO:0000313|EMBL:ABX12250.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_00403, KW ECO:0000256|RuleBase:RU004490}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00403, KW ECO:0000256|RuleBase:RU004490}. SQ SEQUENCE 145 AA; 15941 MW; 1A0966288260CF2D CRC64; MRKSPLGLFA GRVLTTKKKR QRWAISTYKR RELGIDKKAD PLGGAPQARG IVLEKVGVAA KQPNSAIRKC VRVQLIKNGK TVTAFLPRDG AMNFIDEHDE VHIQGMGATQ GGAMGDIPGV RFKVFKVNGT SLHELVIGKK EKPRR // ID A9A337_NITMS Unreviewed; 373 AA. AC A9A337; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12165.1}; GN OrderedLocusNames=Nmar_0269 {ECO:0000313|EMBL:ABX12165.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12165.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12165.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12165.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12165.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0269; -. DR EnsemblBacteria; ABX12165; ABX12165; Nmar_0269. DR KEGG; nmr:Nmar_0269; -. DR eggNOG; arCOG08783; Archaea. DR eggNOG; ENOG4110ZWB; LUCA. DR HOGENOM; HOG000109594; -. DR OMA; HIIAIDL; -. DR BioCyc; NMAR436308:GI3J-279-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR008949; Isoprenoid_synthase_dom. DR SUPFAM; SSF48576; SSF48576; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 373 AA; 43157 MW; FC4B7834F194A327 CRC64; MSGKDESIFS KSALMGTKPG KQIIKQGLFK SKGFKLFNQY KQEAEDGFTP FAQRFAKNLF EQINADQSPN TTQQQFAEEV GSTEIILNAS EIEPIKSKLQ DFDTLHDRVL RILNSNFVKM TFPVFNGLFD ASTDYFKDDK NTTMREDIVD GHIIAIDLSE PMDRIVDKDE DLEYLDDYKL MNPYILKLAR EKISKGGEDV LKEFEEGFKQ ARIGQYLDTK LKEKPTEITE EELIESYKKY RSVMGTAGRN MALNRAPLAD IFYTGMAKAA ESVGCGNEIE DSIRDKAAKI PSWPLFYSLK MNDAKRGFEE TMKHSESYLR EARDALEKLP DNFSHTKFLE FLFLTVEHYN QFWYKKLQEE NIWSDLNKNL PRK // ID A9A406_NITMS Unreviewed; 275 AA. AC A9A406; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 44. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12190.1}; GN OrderedLocusNames=Nmar_0294 {ECO:0000313|EMBL:ABX12190.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12190.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12190.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12190.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12190.1; -; Genomic_DNA. DR ProteinModelPortal; A9A406; -. DR STRING; 436308.Nmar_0294; -. DR EnsemblBacteria; ABX12190; ABX12190; Nmar_0294. DR KEGG; nmr:Nmar_0294; -. DR eggNOG; arCOG00033; Archaea. DR eggNOG; COG2520; LUCA. DR HOGENOM; HOG000222903; -. DR KO; K15429; -. DR OMA; IINMFAG; -. DR BioCyc; NMAR436308:GI3J-306-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR030382; MeTrfase_TRM5/TYW2. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF02475; Met_10; 1. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS51684; SAM_MT_TRM5_TYW2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 22 275 SAM_MT_TRM5_TYW2. FT {ECO:0000259|PROSITE:PS51684}. SQ SEQUENCE 275 AA; 30998 MW; EB2E46B135E61DEB CRC64; MLKKSLESIL SPKESEELIS AFDQIGEIII VRIPDSLLSK KKIIGETLLN DVKIVRSVFY QASAVEGDFR TRNLEIIAGE DNTETEYREF GCKFIVDVEN AFFSPRLSTE RDRIANLIQE EEIMTNMFAG VGMFSIIAAK KKKCTVYSLD INPIASELCE RNIKLNKLAG EVISINGDAT QTINEQLVDK SDRTLMLLPE RSDEFLESAI KTTKDGGIIH YYSHIHADKK SDAGKLSEEH YLKVSPIKSE ILGSKIVRPV GPRYYQTVVD VKIFK // ID A9A3Y3_NITMS Unreviewed; 73 AA. AC A9A3Y3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=AN1-type Zinc finger protein {ECO:0000313|EMBL:ABX13683.1}; GN OrderedLocusNames=Nmar_1787 {ECO:0000313|EMBL:ABX13683.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13683.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13683.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13683.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13683.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Y3; -. DR STRING; 436308.Nmar_1787; -. DR EnsemblBacteria; ABX13683; ABX13683; Nmar_1787. DR KEGG; nmr:Nmar_1787; -. DR eggNOG; arCOG01769; Archaea. DR eggNOG; COG3582; LUCA. DR HOGENOM; HOG000110351; -. DR OMA; GRDRPNI; -. DR BioCyc; NMAR436308:GI3J-1835-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR Gene3D; 4.10.1110.10; -; 1. DR InterPro; IPR000058; Znf_AN1. DR Pfam; PF01428; zf-AN1; 1. DR SMART; SM00154; ZnF_AN1; 1. DR PROSITE; PS51039; ZF_AN1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 48 AN1-type. {ECO:0000259|PROSITE:PS51039}. SQ SEQUENCE 73 AA; 8698 MW; 935E451D45C5600E CRC64; MKSEKCAYCG DLTDLPFQCN YCKDPFCSEH RLPEEHRCVK LSQIRAKRFG EKKVIRDGGR DRPNIFRRIF GRF // ID A9A4W9_NITMS Unreviewed; 722 AA. AC A9A4W9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Thrombospondin type 3 repeat {ECO:0000313|EMBL:ABX13423.1}; GN OrderedLocusNames=Nmar_1527 {ECO:0000313|EMBL:ABX13423.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13423.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13423.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13423.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13423.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4W9; -. DR STRING; 436308.Nmar_1527; -. DR TCDB; 9.B.153.3.2; the putative beta-barrel porin/alpha amylase or phenol_meta-deg (bbp/aa) family. DR EnsemblBacteria; ABX13423; ABX13423; Nmar_1527. DR KEGG; nmr:Nmar_1527; -. DR eggNOG; arCOG07561; Archaea. DR eggNOG; ENOG4111Z4M; LUCA. DR HOGENOM; HOG000109536; -. DR OMA; EDRWDAC; -. DR BioCyc; NMAR436308:GI3J-1569-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR Gene3D; 4.10.1080.10; -; 5. DR InterPro; IPR003367; Thrombospondin_3-like_rpt. DR InterPro; IPR028974; TSP_type-3_rpt. DR Pfam; PF02412; TSP_3; 9. DR SUPFAM; SSF103647; SSF103647; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 722 AA; 79543 MW; 6EE6A81BB3499A87 CRC64; MKQYLLGFLI LLTITIGMTP NSVFANTTID TDGDGVPNAV DQCPHLLEDY DPEYGNNIDG CPADFVPWYD ADYDGIQDHV DNCPTVKETY NRFQDTDGCP DLSPDGPKNV ADTDGDGFPD YLDLCPNRPE TFNGIDDTDG CPDDDRSIMD RDQDGISDGK DTCPLEPETY NKYQDTDGCP DSVDGALSGY TFPDTDGDGI EDRWDACIHE PENYNNNLDW DGCPDIPGVT NPTAPDADFD GIPDDVDACP LDRENYNKFE DTDGCPDVVK HVIFGDSDGD GILDQNDSCP FSPETYNKYL DTDGCPDWVA DNKLSADTDG DGIIDNLDLC PTRPETYNKF QDTDGCPDDS LYRFDADMDG ILDINDACPL EPETYNKYQD TDGCPDSVDG ALSGYTFPDT DGDGIEDRWD ACIHEPENYN GFLDDDGCPE IVGTSGTDMI DSDYDGIADH LDECPTIAER YNKFQDEDGC PDSVVHQTVG DYDGDGIFDD VDQCPTAKET YNKFQDTDGC PDWVADNKLS ADTDGDGIFD YLDLCPTRPE TYNGFQDTDG CPDDSISKLD SDMDGILDIN DACPLEPETY NKYQDTDGCP DSVDGALSGY TFPDTDGDGI EDRWDACIYE PENYNDYLDW DGCPDVLGAE STAPVYADSD GDGYPDSIDS CPSKPETWNK YLDKDGCPDI APEQQRFVHD DDLDDIINDE DLCPLDPEDY DGDRDTDGCP DP // ID A9A5Z9_NITMS Unreviewed; 194 AA. AC A9A5Z9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 42. DE SubName: Full=5-deoxyadenosylcobinamide phosphate nucleotidyltransferase {ECO:0000313|EMBL:ABX13477.1}; GN OrderedLocusNames=Nmar_1581 {ECO:0000313|EMBL:ABX13477.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13477.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13477.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13477.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13477.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z9; -. DR STRING; 436308.Nmar_1581; -. DR EnsemblBacteria; ABX13477; ABX13477; Nmar_1581. DR KEGG; nmr:Nmar_1581; -. DR eggNOG; arCOG01871; Archaea. DR eggNOG; COG2266; LUCA. DR HOGENOM; HOG000228098; -. DR KO; K19712; -. DR OMA; PAGINIM; -. DR BioCyc; NMAR436308:GI3J-1625-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR025877; MobA-like_NTP_Trfase. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF12804; NTP_transf_3; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13477.1}. FT DOMAIN 3 117 NTP_transf_3. {ECO:0000259|Pfam:PF12804}. SQ SEQUENCE 194 AA; 21665 MW; B40D8965FAD5DB48 CRC64; MIGIVMAGGK GTRMNLDDEK LLLQYKKPII LHVIDSLKNS SCFSKIIAVT SPNSPKTKKL LEENNIETFD TSGLGYVEDL NSVLRKFKDL VLVTSGDLPL LDTEIIQTIV KQSDSKKIWT SILVTDKLLS SIGTKSEYSI IHNNQKCNFT GISLIDSQKI NSLENIEENY VILDDKRIAL NLNTKQDYDL LSTA // ID A9A1C6_NITMS Unreviewed; 452 AA. AC A9A1C6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 52. DE SubName: Full=Aminotransferase class I and II {ECO:0000313|EMBL:ABX12761.1}; GN OrderedLocusNames=Nmar_0865 {ECO:0000313|EMBL:ABX12761.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12761.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12761.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12761.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|RuleBase:RU000479}; CC -!- SIMILARITY: Belongs to the class-I pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU000479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12761.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1C6; -. DR STRING; 436308.Nmar_0865; -. DR EnsemblBacteria; ABX12761; ABX12761; Nmar_0865. DR KEGG; nmr:Nmar_0865; -. DR eggNOG; arCOG01130; Archaea. DR eggNOG; COG0436; LUCA. DR HOGENOM; HOG000023840; -. DR KO; K00812; -. DR OMA; KDYLPVK; -. DR BioCyc; NMAR436308:GI3J-893-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR004838; NHTrfase_class1_PyrdxlP-BS. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00105; AA_TRANSFER_CLASS_1; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000256|RuleBase:RU000481, KW ECO:0000313|EMBL:ABX12761.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU000479}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU000481, KW ECO:0000313|EMBL:ABX12761.1}. FT DOMAIN 51 367 Aminotran_1_2. FT {ECO:0000259|Pfam:PF00155}. SQ SEQUENCE 452 AA; 51461 MW; 360A94B0B68BBEFD CRC64; MKFVVDQQVE DIEMPENLKL NTFLQEFHSD CTHPECGFGF YGFAFGQSPF PVPRLIQEAL IKNVNKGEYA AVPGIPELRN AISKYNKHYF GMDVSPDRIY VGPGTKELIF NLLEILHGTV ILPTPAWLGY LPQIRFLKKN YHMLPTRANK KIAPNDLRRL ALRLQDRQKI LILNNPHNPT GLLYNRLELE EIADVCRELN ITVISDEIYA QTTYDFSKFV SMGKIYPEGT FVTNGLSKSH AAGGYRLGYV ILPQHATDLR TQFKKILATE YTAVSTPIQH AAVPGFEISH EMDEYFEITR NIHKIMGEYT YHRLTSIDGI KATKPEATFY LLADFNAYAP ELQKAKIRTS QKLSESLIVH PYHTAIVGGD SLVLERTDFS ARIAYVDYDG AAVYQNYQEN RPKTHSERTE FVTKNAPKIV SGLDMIEKFF GSLKKDAVDE LMLIKNNLKI PN // ID A9A4L7_NITMS Unreviewed; 387 AA. AC A9A4L7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 65. DE RecName: Full=Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; DE EC=2.3.3.16 {ECO:0000256|PIRNR:PIRNR001369}; GN OrderedLocusNames=Nmar_1099 {ECO:0000313|EMBL:ABX12995.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12995.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12995.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12995.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: Acetyl-CoA + H(2)O + oxaloacetate = citrate + CC CoA. {ECO:0000256|PIRNR:PIRNR001369}. CC -!- SIMILARITY: Belongs to the citrate synthase family. CC {ECO:0000256|PIRNR:PIRNR001369}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12995.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4L7; -. DR STRING; 436308.Nmar_1099; -. DR EnsemblBacteria; ABX12995; ABX12995; Nmar_1099. DR KEGG; nmr:Nmar_1099; -. DR eggNOG; arCOG04237; Archaea. DR eggNOG; COG0372; LUCA. DR HOGENOM; HOG000021225; -. DR KO; K01647; -. DR OMA; DNRLLRP; -. DR BioCyc; NMAR436308:GI3J-1130-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0046912; F:transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; IEA:InterPro. DR Gene3D; 1.10.230.10; -; 1. DR Gene3D; 1.10.580.10; -; 1. DR InterPro; IPR011278; 2-MeCitrate/Citrate_synth_II. DR InterPro; IPR016142; Citrate_synth-like_lrg_a-sub. DR InterPro; IPR016143; Citrate_synth-like_sm_a-sub. DR InterPro; IPR002020; Citrate_synthase. DR InterPro; IPR024176; Citrate_synthase_bac-typ. DR PANTHER; PTHR11739; PTHR11739; 1. DR Pfam; PF00285; Citrate_synt; 1. DR PIRSF; PIRSF001369; Citrate_synth; 1. DR PRINTS; PR00143; CITRTSNTHASE. DR SUPFAM; SSF48256; SSF48256; 1. DR TIGRFAMs; TIGR01800; cit_synth_II; 1. PE 3: Inferred from homology; KW Acyltransferase {ECO:0000313|EMBL:ABX12995.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12995.1}. FT ACT_SITE 258 258 {ECO:0000256|PIRSR:PIRSR001369-1}. FT ACT_SITE 314 314 {ECO:0000256|PIRSR:PIRSR001369-1}. SQ SEQUENCE 387 AA; 43702 MW; 05E81DC9AFDF117D CRC64; METKNIGLRG IEVADTRISN IDGEKGKLIY RGFDILDLTK NSTFEETAYL LLYDNLPTKA QLDEFNQKLV EARYIPKQMQ KNMGNWRKDA DPMDMLQAFV SALAGYYDEE FSNKEASYEK AINLIAKVPT IIASWQRIRN GLPIVDPDSS LSHAANFLYM MSGEKPDPEV EKVFDVCLIL HADHTFNAST FTARQVASTR AHMYSASSAA IGALSGELHG GANTEVMKML LEIKEIDKVE PWIKEKMSAG ERIMGMGHAV YRTYDPRAQV LKELSRKLAE KTKEPWFDMT EKVETTTISE MKAQKGKDIY PNVDLYSASI YYMLKIPVDL NTPIFAISRV VGWAAHIIEE KFAEAAPKPA LYRPKATYVG KYCGPEGCEY KTLDLRK // ID A9A2E0_NITMS Unreviewed; 305 AA. AC A9A2E0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 40. DE SubName: Full=LAO/AO transport system ATPase {ECO:0000313|EMBL:ABX12851.1}; GN OrderedLocusNames=Nmar_0955 {ECO:0000313|EMBL:ABX12851.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12851.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12851.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12851.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12851.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2E0; -. DR STRING; 436308.Nmar_0955; -. DR EnsemblBacteria; ABX12851; ABX12851; Nmar_0955. DR KEGG; nmr:Nmar_0955; -. DR eggNOG; arCOG01226; Archaea. DR eggNOG; COG1703; LUCA. DR HOGENOM; HOG000003903; -. DR KO; K07588; -. DR OMA; FDVIKLM; -. DR BioCyc; NMAR436308:GI3J-983-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR GO; GO:0003924; F:GTPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR005129; GTPase_ArgK. DR InterPro; IPR027417; P-loop_NTPase. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00750; lao; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 305 AA; 33003 MW; 9F9376BBC6DD7675 CRC64; MDLLVDLKKG KRGAIAKAIT VVENDQKESK KLLKKIFKNT GTSIIIGITG PAGAGKSSLI NKTAVAMKKL GTKPAVLAVD PTSHVTGGAI LGDRVRMTES TDSGTYIRSI ASRGATGAVS RSLRNSIRVL EYAGFNPIII ESVGAGQTEV EISNIADITV VVFNPNTGDS IQTIKAGLTE IGDVYLVNKS DLSGTNQLFD AVRDFIGDSD RNPAILKTSV KKNTGITEFA KTLKNLMALK KKSKKQKDQE RLETELKDIV LNNVREKIDE MLDSDKTFSK YLKKLQSKDI DPFDAGDKIT KSMLK // ID A9A2R8_NITMS Unreviewed; 221 AA. AC A9A2R8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13595.1}; GN OrderedLocusNames=Nmar_1699 {ECO:0000313|EMBL:ABX13595.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13595.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13595.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13595.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13595.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1699; -. DR EnsemblBacteria; ABX13595; ABX13595; Nmar_1699. DR KEGG; nmr:Nmar_1699; -. DR eggNOG; arCOG08770; Archaea. DR eggNOG; ENOG41111NH; LUCA. DR HOGENOM; HOG000109103; -. DR OMA; AWKNIYS; -. DR BioCyc; NMAR436308:GI3J-1744-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 221 AA; 25193 MW; F9B66B001FB86500 CRC64; MGKSETKLAI FDTFKTKDEE LTGEALRQRA IIGILAGDAN PAERTRTGIS QNMAKKQGIA WKNIYSGIFR DLDEILLPMG IAEEDGRLPL QRGPKALQEK GIPYYHLTKK GILIALSISD IKNREKLLKE FFSKSESEEK EFEKILSSLL KNSPKFAYSI FQKYVKAFCD NKIKELLPFD LTKLKEISDE SLEIQKEILV AFVELSKQEK EDAIKFLDKI T // ID A9A317_NITMS Unreviewed; 459 AA. AC A9A317; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX12145.1}; GN OrderedLocusNames=Nmar_0249 {ECO:0000313|EMBL:ABX12145.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12145.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12145.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12145.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12145.1; -; Genomic_DNA. DR ProteinModelPortal; A9A317; -. DR STRING; 436308.Nmar_0249; -. DR EnsemblBacteria; ABX12145; ABX12145; Nmar_0249. DR KEGG; nmr:Nmar_0249; -. DR eggNOG; ENOG4102TTI; Archaea. DR eggNOG; ENOG410XQA6; LUCA. DR OMA; LAPYERN; -. DR BioCyc; NMAR436308:GI3J-256-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF00672; HAMP; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50885; HAMP; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12145.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12145.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 163 181 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 183 235 HAMP. {ECO:0000259|PROSITE:PS50885}. FT DOMAIN 252 456 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. FT COILED 216 243 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 459 AA; 51516 MW; 9A27D237B90C7C80 CRC64; MKLTQRIILI TILPLIISTS VSAAIISEIA SDQYFELTIS KVQSLSKLTE SEMRNPMHQL DFDALNEIVD NLEGDENIQQ VLVLFPDGRL LTDGTDNDYN YGTTFEDKFI QNAITSNEEA VTIDNNIIRV SNSIVLNEKI GILVIDYSTN SIEKSIQETI TEIIVVAGII IGISIFVAVY LSRSISNPIL IIKEKIDSIS KGDLQKQEIK SKIPEINELY DEIINMGEKI EKYQNELVKT ERLTTIGEMS ARITHDLRNP LTTIKNAVAV MKMKNPEKIK ENQQYFDMIQ DGVTRMNHQI DEVLAFVKAK EPERNFVEFS EISNNVLNTI SIPENIKISI SESNEKIWCD KIQLQNVLIN MISNSVQAIG KNQGEIIIDY KIEGEFDKIT VKDNGTGIPE NLLDAVFEPL YTTKQDGTGL GLVSCKNAVE AHNGKIYAQN LDEGGAIFTI LLPKIKETK // ID A9A2F4_NITMS Unreviewed; 109 AA. AC A9A2F4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12865.1}; GN OrderedLocusNames=Nmar_0969 {ECO:0000313|EMBL:ABX12865.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12865.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12865.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12865.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12865.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2F4; -. DR STRING; 436308.Nmar_0969; -. DR EnsemblBacteria; ABX12865; ABX12865; Nmar_0969. DR KEGG; nmr:Nmar_0969; -. DR eggNOG; ENOG4102TH6; Archaea. DR eggNOG; ENOG4111SG8; LUCA. DR HOGENOM; HOG000023855; -. DR OMA; HLLGEHR; -. DR BioCyc; NMAR436308:GI3J-997-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.440.10; -; 1. DR InterPro; IPR004260; Pyr-dimer_DNA_glycosylase. DR InterPro; IPR024796; T4_endonuc_V. DR Pfam; PF03013; Pyr_excise; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 109 AA; 12738 MW; FD60B1D06129AF2F CRC64; MRIWDIPPKK LCRNHLLGEH RELHAMWAVI TEGKKGYSLH PETVRWKGKL KALYSRHEEL VSEMTRRGYS HQSPLDKRKA TGNSKQDTFV DSPSRQIQIL KKKGCDCKI // ID A9A4H6_NITMS Unreviewed; 210 AA. AC A9A4H6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 37. DE SubName: Full=SNARE associated Golgi protein {ECO:0000313|EMBL:ABX12954.1}; GN OrderedLocusNames=Nmar_1058 {ECO:0000313|EMBL:ABX12954.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12954.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12954.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12954.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12954.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1058; -. DR EnsemblBacteria; ABX12954; ABX12954; Nmar_1058. DR KEGG; nmr:Nmar_1058; -. DR eggNOG; arCOG03119; Archaea. DR eggNOG; ENOG4111WI7; LUCA. DR HOGENOM; HOG000106808; -. DR OMA; RMRPFER; -. DR BioCyc; NMAR436308:GI3J-1089-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032816; SNARE_assoc. DR Pfam; PF09335; SNARE_assoc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 40 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 52 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 129 149 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 169 188 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 210 AA; 23439 MW; 8FF66249C085F595 CRC64; MDFVDLFPFA PEVGYLSLAL VNFFGSLVPF VPLPGFLLLA TMSVGDQFDL HVLAILSAVT ATVAKQIIFY VSYGGRRIIK EETRKRMRPF ERLVKRYGAG AAFFAAATPI PDDLVYVPLG LAKYNPKRFF IATLTGKFVL SYTIVFVSHY LGLSLVEPFL ENIDDATPVY IGIIAFGAMM TAVVVLLLRL DWQRILGKFA PWTLDENNKD // ID A9A3W8_NITMS Unreviewed; 448 AA. AC A9A3W8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Lysine 2,3-aminomutase related protein {ECO:0000313|EMBL:ABX13668.1}; GN OrderedLocusNames=Nmar_1772 {ECO:0000313|EMBL:ABX13668.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13668.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13668.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13668.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13668.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3W8; -. DR STRING; 436308.Nmar_1772; -. DR EnsemblBacteria; ABX13668; ABX13668; Nmar_1772. DR KEGG; nmr:Nmar_1772; -. DR eggNOG; arCOG03246; Archaea. DR eggNOG; COG1509; LUCA. DR HOGENOM; HOG000223519; -. DR OMA; NPHPAGQ; -. DR BioCyc; NMAR436308:GI3J-1819-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 448 AA; 51322 MW; D44E324158F8862A CRC64; MTYQESVWDD SPSLKSYTLS NFRDLPQIQN ISEEKQFEME VVGNVLPFKA NNYVVEQLIN WNDIPNDPMY VLTFPQRGML KPEHYAKMEN TLKNTSDKKE IANVANEIRL QLNPHPAGQM ELNVPTLKDG TKLYGMQHKY KETCLFFPSQ SQTCHAYCSF CFRWPQFVGM DEMKFAMQEG EQLVQYVSEH PEISDVLFTG GDPMIMKAKM FSKYVDALIE AKLPNLKTIR IGTKALSYWP YKFLTDSDSQ EMLQVFQKIT DSGLHLAFMA HFNHLNELST NAVKSAIKEV RKTGAQIRTQ SPLLAHINDD AEMWANMWTK QVQLGCIPYY MFVVRDTGAQ HYFGVPLVKA YEIFSQAYST VSGLGRTVRG PSMSATPGKV QVVGTTQING EKLLILRFLQ GRNPNWIKEP FFAKYDENAI WLDDLKPAFG DKFFFEDELD AIKASKTS // ID A9A4W8_NITMS Unreviewed; 722 AA. AC A9A4W8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Thrombospondin type 3 repeat {ECO:0000313|EMBL:ABX13422.1}; GN OrderedLocusNames=Nmar_1526 {ECO:0000313|EMBL:ABX13422.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13422.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13422.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13422.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13422.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4W8; -. DR STRING; 436308.Nmar_1526; -. DR EnsemblBacteria; ABX13422; ABX13422; Nmar_1526. DR KEGG; nmr:Nmar_1526; -. DR eggNOG; arCOG07561; Archaea. DR eggNOG; ENOG4111Z4M; LUCA. DR HOGENOM; HOG000109536; -. DR OMA; EPETYNF; -. DR BioCyc; NMAR436308:GI3J-1568-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR Gene3D; 4.10.1080.10; -; 5. DR InterPro; IPR018247; EF_Hand_1_Ca_BS. DR InterPro; IPR003367; Thrombospondin_3-like_rpt. DR InterPro; IPR028974; TSP_type-3_rpt. DR Pfam; PF02412; TSP_3; 10. DR SUPFAM; SSF103647; SSF103647; 6. DR PROSITE; PS00018; EF_HAND_1; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 722 AA; 79310 MW; D472D333D3E7FE0B CRC64; MKQYILGFLI LLTITIGMTP NIVFANTTID TDGDGVPNAV DFCPHLLEDY DPEYGNNIDG CPADFVPWYD ADYDGIQDHI DRCPTVKETY NKFQDTDGCP DLSPDGDTGI ADSDGDGFPD YLDLCPNRPE TFNGIDDTDG CPDDDHSLLD RDQDGISDGK DACPLEPETY NFYQDSDGCP DSVDTTTSLY QFPDTDGDGI DDRWDQCLNE PENYNNFQDQ DGCIDIPGVD SEGFIDSDFD SIGDDVDACP LERENYNKFQ DSDGCPDVLQ LPISGDADGD GLLNANDACP YSPETYNKLQ DSDGCPDSLT DGFTAYDSDG DGIIDNLDWC PNQPETFNGF QDSDGCPDYS ISTLDSDRDG VPNVSDSCPL EPETYNFYQD SDGCPDSVDG VLFSYTFPDA DGDGIDDRWD ACLDEQENFN GFLDSDGCPD TPGISKSSLL DTDYDHIPDV RDSCPTIAEN YNKFQDEDGC PDTIEHDSFG DSDGDGIIDK MDQCPTAKET YNKFQDTDGC PDSLTDGFTA YDSDGDGIID NLDLCPTQPE TYNKFQDTDG CPDDSRSTLD SDMDGIPNVL DSCPLEPETY NFYQDTDGCP DSTGTVTSSY SFPDADGDGI DDRWDACLDE QENFNGYLDW DGCPDILAAA PTAPTKFDSD GDGFYDSIDS CPSKPETWNK YNDDDGCPDI APEQQRFVHD DDLDDIINDE DLCPLDPEDY DGDRDTDGCP DN // ID A9A276_NITMS Unreviewed; 88 AA. AC A9A276; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12787.1}; GN OrderedLocusNames=Nmar_0891 {ECO:0000313|EMBL:ABX12787.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12787.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12787.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12787.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12787.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12787; ABX12787; Nmar_0891. DR KEGG; nmr:Nmar_0891; -. DR eggNOG; arCOG10560; Archaea. DR eggNOG; ENOG41111RD; LUCA. DR BioCyc; NMAR436308:GI3J-919-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 88 AA; 10732 MW; 0DEBCB0F994752A4 CRC64; MDWVEALLRK SCDRTLTKEE VLHSLFHMIE INENTMHQIQ SDKRDFGPEL EELKQTEIRD LDFHLKYYRS LVNYINSVHE NKIFENQH // ID A9A347_NITMS Unreviewed; 378 AA. AC A9A347; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ABX12175.1}; DE EC=1.6.99.5 {ECO:0000313|EMBL:ABX12175.1}; GN OrderedLocusNames=Nmar_0279 {ECO:0000313|EMBL:ABX12175.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12175.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12175.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12175.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the complex I 49 kDa subunit family. CC {ECO:0000256|RuleBase:RU003685}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12175.1; -; Genomic_DNA. DR ProteinModelPortal; A9A347; -. DR STRING; 436308.Nmar_0279; -. DR EnsemblBacteria; ABX12175; ABX12175; Nmar_0279. DR KEGG; nmr:Nmar_0279; -. DR eggNOG; arCOG01548; Archaea. DR eggNOG; COG0649; LUCA. DR HOGENOM; HOG000228263; -. DR KO; K00333; -. DR OMA; YWPVEAD; -. DR BioCyc; NMAR436308:GI3J-289-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0050136; F:NADH dehydrogenase (quinone) activity; IEA:UniProtKB-EC. DR GO; GO:0048038; F:quinone binding; IEA:InterPro. DR Gene3D; 1.10.645.10; -; 2. DR InterPro; IPR001135; NADH_Q_OxRdtase_suD. DR InterPro; IPR014029; NADH_UbQ_OxRdtase_49kDa_CS. DR InterPro; IPR029014; NiFe_Hase-like. DR Pfam; PF00346; Complex1_49kDa; 1. DR SUPFAM; SSF56762; SSF56762; 1. DR PROSITE; PS00535; COMPLEX1_49K; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW NAD {ECO:0000256|RuleBase:RU003685}; KW Oxidoreductase {ECO:0000256|RuleBase:RU003685, KW ECO:0000313|EMBL:ABX12175.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 132 378 Complex1_49kDa. FT {ECO:0000259|Pfam:PF00346}. SQ SEQUENCE 378 AA; 42863 MW; 1E687ADC90828393 CRC64; MTDIMPPGLA LKKVDERIMT LNVGPQHPGS GHMRIVVQID GDYIVACDPD PGYVHRGEEK MAEYRNYITN VPHLERPVIH DSCNVLYPYV LGAEEILGIE VPERAKYVRV ICSELNRCIY TMYWLAIYGI FLGHSTMFMW PAGDRELLID LMEKVSGARV THAHFIPGGV RNDLPANFED VCLRQVNYFE KRIKEYAAVF YDNPILISRT QDTGVLSREN AIRYGTTGSV LRASGVDYDL RVKAPYDVYD ELDVHTNVLK EGDSYARSKV PWLDMMESCN IIRQALQKMP KSGSVRTKLK PNPKTKGPAT VYKRVESGRG SLGCYIVSDG KTEPYRVKMS VPSFRNLLAM PNLLIGEKLG NMPSVYWSLN YWPVEADR // ID A9A4R5_NITMS Unreviewed; 360 AA. AC A9A4R5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 48. DE SubName: Full=DNA-cytosine methyltransferase {ECO:0000313|EMBL:ABX13369.1}; GN OrderedLocusNames=Nmar_1473 {ECO:0000313|EMBL:ABX13369.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13369.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13369.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13369.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class I-like SAM-binding CC methyltransferase superfamily. C5-methyltransferase family. CC {ECO:0000256|RuleBase:RU000416}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13369.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4R5; -. DR STRING; 436308.Nmar_1473; -. DR REBASE; 16734; M.NmaSCMORF1473P. DR EnsemblBacteria; ABX13369; ABX13369; Nmar_1473. DR KEGG; nmr:Nmar_1473; -. DR eggNOG; arCOG04157; Archaea. DR eggNOG; COG0270; LUCA. DR HOGENOM; HOG000225505; -. DR KO; K00558; -. DR OMA; GGRDEQY; -. DR BioCyc; NMAR436308:GI3J-1510-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR001525; C5_MeTfrase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF00145; DNA_methylase; 1. DR PRINTS; PR00105; C5METTRFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR TIGRFAMs; TIGR00675; dcm; 1. DR PROSITE; PS51679; SAM_MT_C5; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13369.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13369.1}. FT DOMAIN 8 356 SAM-dependent_MTases. FT {ECO:0000259|Pfam:PF00145}. SQ SEQUENCE 360 AA; 40756 MW; CDA6A573C9D095EB CRC64; MRKEEIGVID LFAGSGGLSL GFKNAGFKVI AAVEFDKSAA ETYSKNFKET KLIVDDIKNI KSNELKKITS KERFCVIGGP PCQPYSNANK QNNGKNHPFA NAINHYFRII SELKPQAFLF ENVTNFRNLP GWKKFLNDFK KLGYILSVSV IDCEKAGLPQ KRKRLFVTGF LNGHECNLNL IKIPVSCDNL FDVISGLPSI KQGTSGNEIM KHPKKFNSPY GKKLGGNINN LYNHWCTKHG EDVINTISEI NEGRSLLDSW KTLSKKTKSR FKNKNSLHGN IYRRLSYQHT TPTIVHARRA MLLHPKENRI ISVREAARIQ SFPDSFRFFG TNNSQYQQIA DAVPPLVAES LAHEIRKNLK // ID A9A218_NITMS Unreviewed; 147 AA. AC A9A218; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12431.1}; GN OrderedLocusNames=Nmar_0535 {ECO:0000313|EMBL:ABX12431.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12431.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12431.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12431.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12431.1; -; Genomic_DNA. DR ProteinModelPortal; A9A218; -. DR STRING; 436308.Nmar_0535; -. DR EnsemblBacteria; ABX12431; ABX12431; Nmar_0535. DR KEGG; nmr:Nmar_0535; -. DR eggNOG; arCOG04182; Archaea. DR eggNOG; COG2004; LUCA. DR HOGENOM; HOG000106282; -. DR OMA; RRELTCN; -. DR BioCyc; NMAR436308:GI3J-557-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:InterPro. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 3.30.70.330; -; 1. DR InterPro; IPR012677; Nucleotide-bd_a/b_plait. DR InterPro; IPR012678; Ribosomal_L23/L15e_core_dom. DR SUPFAM; SSF54189; SSF54189; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 147 AA; 16241 MW; E8C52CC3086BFBA2 CRC64; MKYLKDFGYM SIIETVTDVD NTFLSRRELT CNFAGLAGKL KKLEAVDMIT KEFKLDGKVV IPMRLQTHVG KPIVTGTFFV YEDEGLAKKH VNPTIFSRLE KSKAKLAEAE AAAQEAPAEE AASEDAPAED KAVEAPAEES KEEEKSE // ID A9A3X1_NITMS Unreviewed; 315 AA. AC A9A3X1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Putative RNA methylase {ECO:0000313|EMBL:ABX13671.1}; GN OrderedLocusNames=Nmar_1775 {ECO:0000313|EMBL:ABX13671.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13671.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13671.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13671.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13671.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X1; -. DR STRING; 436308.Nmar_1775; -. DR EnsemblBacteria; ABX13671; ABX13671; Nmar_1775. DR KEGG; nmr:Nmar_1775; -. DR eggNOG; arCOG00047; Archaea. DR eggNOG; COG1041; LUCA. DR KO; K07446; -. DR OMA; RTHEVSE; -. DR BioCyc; NMAR436308:GI3J-1822-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR000241; RNA_methylase_dom. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01170; UPF0020; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS01261; UPF0020; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13671.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13671.1}. FT DOMAIN 184 195 UPF0020. {ECO:0000259|PROSITE:PS01261}. SQ SEQUENCE 315 AA; 36272 MW; 4D1C1B4CBC41D130 CRC64; MPESFFVLSK EYLEIAIDEV ITIAKTFDRF SKIKIISNLV IIQSKTNWYE ISKKATFVKT SGQILRKMSG LFLDEGNFEI LKNAKTFVCR IINLSSNQFD IPELENSMGD MISKFSNAKV KLENPDITVY LIFTNKENFF GFSKITKEKK RPKKAISQPH ELDWKLTRAM INLVGLKKGE TVCDPFCGTG TTLLEAESMG IHGIGLDFDE KMVEITKKNL KENGYKSRVI HSDFQEIKNM ADEFDGIVTD FPYGKNTKTS EKPEEIIKKF VTIVPKRKKM AIMYKKELGD KLKLKGLKKY QIYRHKSLTR TILIK // ID A9A1W1_NITMS Unreviewed; 137 AA. AC A9A1W1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12082.1}; GN OrderedLocusNames=Nmar_0186 {ECO:0000313|EMBL:ABX12082.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12082.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12082.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12082.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12082.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0186; -. DR EnsemblBacteria; ABX12082; ABX12082; Nmar_0186. DR KEGG; nmr:Nmar_0186; -. DR eggNOG; arCOG03103; Archaea. DR eggNOG; COG1612; LUCA. DR HOGENOM; HOG000110886; -. DR KO; K02259; -. DR OMA; GANTIFN; -. DR BioCyc; NMAR436308:GI3J-188-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016627; F:oxidoreductase activity, acting on the CH-CH group of donors; IEA:InterPro. DR GO; GO:0006784; P:heme a biosynthetic process; IEA:InterPro. DR InterPro; IPR003780; COX15/CtaA_fam. DR Pfam; PF02628; COX15-CtaA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 44 65 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 77 95 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 101 126 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 137 AA; 14848 MW; 46B615FB39F7AF1B CRC64; MIVLYSLMFL GGYISAAGLG LTCPEWPLCP NGVMPSEEYL IEWIHRLAAA TTGVLVIATM VASFLNKRAD TKIKVTSTLA TVFVITQITL GALVIDTKLH AVLVAIHLGI GILLFSMVLL TALFAFRISR ESQEIKV // ID A9A441_NITMS Unreviewed; 256 AA. AC A9A441; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 55. DE SubName: Full=ABC transporter related {ECO:0000313|EMBL:ABX12225.1}; GN OrderedLocusNames=Nmar_0329 {ECO:0000313|EMBL:ABX12225.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12225.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12225.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12225.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 ABC transporter domain. CC {ECO:0000256|RuleBase:RU363033}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12225.1; -; Genomic_DNA. DR ProteinModelPortal; A9A441; -. DR STRING; 436308.Nmar_0329; -. DR EnsemblBacteria; ABX12225; ABX12225; Nmar_0329. DR KEGG; nmr:Nmar_0329; -. DR eggNOG; arCOG00201; Archaea. DR eggNOG; COG1121; LUCA. DR KO; K11710; -. DR OMA; ADYFDHV; -. DR BioCyc; NMAR436308:GI3J-344-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATPase activity; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR003439; ABC_transporter-like. DR InterPro; IPR017871; ABC_transporter_CS. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00005; ABC_tran; 1. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1. DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU363033}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU363033}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 19 251 ABC transporter. FT {ECO:0000259|PROSITE:PS50893}. SQ SEQUENCE 256 AA; 29022 MW; 9E0F089701B01802 CRC64; MMEQKSVRRN MNDEQTFPIE IKHLSVTYRT EPALWNLDLN LPEGQLIAIV GPNGAGKSTL IKAVMGLVPI TAGKVSIYGK QYSKQRSKVA YVPQRGTVDW DFPTDALDVV EMGLYGKLGW LRRPNSQTKE KARECLEKVG LKDYADRQIG QLSGGQQQRV FLARALAQDP QIYLMDEPLN GVDAITEETI LSILEDLKKE GKTIVMVHHD LQTVDKYFDW VVMLNRNLIS AGPIKEVFTK ENLDIAYQEK QRMSIQ // ID A9A4K7_NITMS Unreviewed; 166 AA. AC A9A4K7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12985.1}; GN OrderedLocusNames=Nmar_1089 {ECO:0000313|EMBL:ABX12985.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12985.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12985.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12985.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12985.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1089; -. DR EnsemblBacteria; ABX12985; ABX12985; Nmar_1089. DR KEGG; nmr:Nmar_1089; -. DR eggNOG; arCOG08707; Archaea. DR eggNOG; ENOG411110C; LUCA. DR BioCyc; NMAR436308:GI3J-1120-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 166 AA; 18864 MW; F2AEE1F5CCE4ACD5 CRC64; MQYLNVLNSK RDFSKDIERI KSLSSKIDKK ISEVKSSDDK NIEKLTLEEL QDLNKIVGIA DFMLVKYADK KEMRSILKYF VSVISEAAGS IEDLDDEISE LIMSAEDSIS KVKGIHVDIS EKSDFKKKYH DGPDYDEHET SAINLTNFAT EINTVEYQQN SQGNTA // ID A9A190_NITMS Unreviewed; 86 AA. AC A9A190; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12376.1}; GN OrderedLocusNames=Nmar_0480 {ECO:0000313|EMBL:ABX12376.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12376.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12376.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12376.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12376.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0480; -. DR EnsemblBacteria; ABX12376; ABX12376; Nmar_0480. DR KEGG; nmr:Nmar_0480; -. DR BioCyc; NMAR436308:GI3J-500-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 28 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 86 AA; 9584 MW; 0C35911150F8378E CRC64; MKATAKQIAG ISMVILFSIF FVLSFVIFPE TGEKILYGKH PPNKKSEPLE YSQIITSGNY QCMESASLKT NGDLPNFVTE FNKCNS // ID A9A2F5_NITMS Unreviewed; 93 AA. AC A9A2F5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12866.1}; GN OrderedLocusNames=Nmar_0970 {ECO:0000313|EMBL:ABX12866.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12866.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12866.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12866.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12866.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12866; ABX12866; Nmar_0970. DR KEGG; nmr:Nmar_0970; -. DR eggNOG; arCOG08644; Archaea. DR eggNOG; ENOG41111FH; LUCA. DR HOGENOM; HOG000105232; -. DR OMA; NVGMIMY; -. DR BioCyc; NMAR436308:GI3J-998-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 15 35 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 79 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 93 AA; 10772 MW; A796185E95547B76 CRC64; MNAWNKFWKW YENKILGSII VIAVIQFIQV PHMVWNADLM LEAGLVSRVH PVIDWFLYGV DLIEIVSIVN VGMIMYSLLK KRQSQKRLAA KAA // ID A9A490_NITMS Unreviewed; 126 AA. AC A9A490; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Histone protein {ECO:0000313|EMBL:ABX12579.1}; GN OrderedLocusNames=Nmar_0683 {ECO:0000313|EMBL:ABX12579.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12579.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12579.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12579.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12579.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12579; ABX12579; Nmar_0683. DR KEGG; nmr:Nmar_0683; -. DR OMA; APADDHT; -. DR BioCyc; NMAR436308:GI3J-708-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000786; C:nucleosome; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006334; P:nucleosome assembly; IEA:InterPro. DR InterPro; IPR005819; Histone_H5. DR PRINTS; PR00624; HISTONEH5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 126 AA; 13643 MW; 73550E31A7CD0D54 CRC64; MAAKRKAAPK RKAAPKRKAA AKRKAAPKRK AAPKRKAAKR KTAAKKSAPK RKAAAKRKAA PKRKAAKRKT AAKKAAPKRK AAAKRKAAPK RKAAKRKTAA KKAAPKRKAA AKRKAAPKRK AAKRRR // ID A9A249_NITMS Unreviewed; 110 AA. AC A9A249; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12462.1}; GN OrderedLocusNames=Nmar_0566 {ECO:0000313|EMBL:ABX12462.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12462.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12462.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12462.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12462.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0566; -. DR EnsemblBacteria; ABX12462; ABX12462; Nmar_0566. DR KEGG; nmr:Nmar_0566; -. DR BioCyc; NMAR436308:GI3J-589-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 110 AA; 12324 MW; 0A45717934ECA1AA CRC64; MSQIEAQYNE FTNSITQTLS NVDVDLLLKI MYLERKLPDA PPMVELTIDY NSGTNIQNKQ EAVRAKYGFP MNAGEHGLTL VGRMTVPLIE ELSKNRDVKF ISGKATPASY // ID A9A1K5_NITMS Unreviewed; 285 AA. AC A9A1K5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Lysine biosynthesis enzyme LysX {ECO:0000313|EMBL:ABX13184.1}; GN OrderedLocusNames=Nmar_1288 {ECO:0000313|EMBL:ABX13184.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13184.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13184.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13184.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13184.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K5; -. DR STRING; 436308.Nmar_1288; -. DR EnsemblBacteria; ABX13184; ABX13184; Nmar_1288. DR KEGG; nmr:Nmar_1288; -. DR eggNOG; arCOG01589; Archaea. DR eggNOG; COG0189; LUCA. DR HOGENOM; HOG000228553; -. DR KO; K05827; -. DR OMA; VYSTRRI; -. DR BioCyc; NMAR436308:GI3J-1321-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0006464; P:cellular protein modification process; IEA:InterPro. DR GO; GO:0009085; P:lysine biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.20; -; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013651; ATP-grasp_RimK-type. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR011870; LysX_arch. DR InterPro; IPR016185; PreATP-grasp_dom. DR InterPro; IPR004666; RpS6_RimK/Lys_biosynth_LsyX. DR Pfam; PF08443; RimK; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR TIGRFAMs; TIGR02144; LysX_arch; 1. DR TIGRFAMs; TIGR00768; rimK_fam; 1. DR PROSITE; PS50975; ATP_GRASP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 95 280 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 285 AA; 31887 MW; 019C121AA4E15E79 CRC64; MSKVCIVFDR LRAEEKMLQK EASELGHDTV MLDAKITQVN TDSKKEDFDL GDVVLERCVS YFRGLHFTAS LEFMDIPVLN KFDVASICGN KMFMTLLLKK AGVPTPKTYF SFTSESAAEN LEKAGYPLVI KPVIGSWGRG VMPIKDRDTF DAISEIRDIT DSPHDRIYYL QELVERPPRD IRVITVGDEP VAAMYRKSSG GFKTNIALGA DPELCEITKE MEDMAAKASK AMGGGILGID MMEDEKNGLV VHEVNNTVEF KGLARVAQRN IPKEMVEFAL NYVRK // ID A9A3B3_NITMS Unreviewed; 206 AA. AC A9A3B3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ABX12542.1}; GN OrderedLocusNames=Nmar_0646 {ECO:0000313|EMBL:ABX12542.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12542.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12542.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12542.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12542.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0646; -. DR EnsemblBacteria; ABX12542; ABX12542; Nmar_0646. DR KEGG; nmr:Nmar_0646; -. DR eggNOG; arCOG01947; Archaea. DR eggNOG; COG1280; LUCA. DR HOGENOM; HOG000230924; -. DR OMA; WWATVGA; -. DR BioCyc; NMAR436308:GI3J-671-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0006865; P:amino acid transport; IEA:InterPro. DR InterPro; IPR001123; LysE-type. DR Pfam; PF01810; LysE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 28 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 49 66 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 72 90 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 110 130 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 142 170 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 182 201 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 206 AA; 22667 MW; D6C2F8071016A79C CRC64; MEQFFEFAVL VIVISASGVM APGPLFAANI SYGLREGAKS GVKMATGHAI VELPLVILLG IGVFSLESFP EFRTIISILG AITLFVFAAL QIRTVLKEKE LSITNPKQGA LITGVLLSGL NPFFIIWWLT IGFKLISDAM MIWAFSGMLI MFGLHIWMDF AWLGGISFLA SKSVKILSNK NYKILMIGLS GMLIYFGITF LQEIKY // ID A9A5D4_NITMS Unreviewed; 228 AA. AC A9A5D4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=ERCC4 domain protein {ECO:0000313|EMBL:ABX12333.1}; GN OrderedLocusNames=Nmar_0437 {ECO:0000313|EMBL:ABX12333.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12333.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12333.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12333.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12333.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5D4; -. DR STRING; 436308.Nmar_0437; -. DR EnsemblBacteria; ABX12333; ABX12333; Nmar_0437. DR KEGG; nmr:Nmar_0437; -. DR eggNOG; arCOG04206; Archaea. DR eggNOG; COG1948; LUCA. DR HOGENOM; HOG000104951; -. DR KO; K10848; -. DR OMA; YTEDKAQ; -. DR BioCyc; NMAR436308:GI3J-455-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0004518; F:nuclease activity; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IEA:InterPro. DR Gene3D; 3.40.50.10130; -; 1. DR InterPro; IPR020819; DNA_repair_nuc_XPF/helicase. DR InterPro; IPR006166; ERCC4_domain. DR InterPro; IPR003583; Hlx-hairpin-Hlx_DNA-bd_motif. DR InterPro; IPR011335; Restrct_endonuc-II-like. DR InterPro; IPR010994; RuvA_2-like. DR Pfam; PF02732; ERCC4; 1. DR SMART; SM00891; ERCC4; 1. DR SMART; SM00278; HhH1; 2. DR SUPFAM; SSF47781; SSF47781; 1. DR SUPFAM; SSF52980; SSF52980; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 87 ERCC4. {ECO:0000259|SMART:SM00891}. FT DOMAIN 158 177 HhH1. {ECO:0000259|SMART:SM00278}. FT DOMAIN 190 209 HhH1. {ECO:0000259|SMART:SM00278}. SQ SEQUENCE 228 AA; 25534 MW; C68B39B691E4D189 CRC64; MNLENLRIIV DERERKSGIP ELLKSVGLNL EMKTLPIGDY IVAPETVVER KSIRDLMASV FDGRLFDQCT RLKEHFENPV VLMEGNVDEI EEITENPLIF YGAISTVVLD FKIPVIPTPS ATHTAKLLVS MCSRKDAPKG PYLKKIKKSS DLERQQLSSL CSLPGIGEKF AIRMLEKFGT PLKVFTATTA ELSKVEGLGD ARAKKIKKVL DTKSKHLKKS NQKTLHDD // ID A9A2K4_NITMS Unreviewed; 125 AA. AC A9A2K4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13243.1}; GN OrderedLocusNames=Nmar_1347 {ECO:0000313|EMBL:ABX13243.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13243.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13243.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13243.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13243.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1347; -. DR EnsemblBacteria; ABX13243; ABX13243; Nmar_1347. DR KEGG; nmr:Nmar_1347; -. DR BioCyc; NMAR436308:GI3J-1381-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 125 AA; 13842 MW; 5AEBA4510D8299C8 CRC64; MSVSEYLVKN LINIFEKDEL QVIQANCTGF ENPTDVEGVA PDVIWWNPHK ELYHIGIVAD SQTVSSDLTK QKILTLSKLM MGRGASEGKR LPFVIGVPPE ASNAVDKTFQ ENEINSQGNA QKIIL // ID A9A5E1_NITMS Unreviewed; 688 AA. AC A9A5E1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Glycosyl transferase family 2 {ECO:0000313|EMBL:ABX12340.1}; GN OrderedLocusNames=Nmar_0444 {ECO:0000313|EMBL:ABX12340.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12340.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12340.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12340.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12340.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5E1; -. DR STRING; 436308.Nmar_0444; -. DR CAZy; GT2; Glycosyltransferase Family 2. DR EnsemblBacteria; ABX12340; ABX12340; Nmar_0444. DR KEGG; nmr:Nmar_0444; -. DR eggNOG; arCOG01389; Archaea. DR eggNOG; COG1215; LUCA. DR HOGENOM; HOG000036426; -. DR OMA; WGHVNEN; -. DR BioCyc; NMAR436308:GI3J-462-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12340.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 32 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 314 332 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 338 361 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 426 452 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 458 478 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 503 527 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 648 673 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 688 AA; 77280 MW; 8AD04B91107D50C3 CRC64; MAINPFTAFV FDLFIISAVI ITAYTCNFYY LAFLSRKRKD NLQTADLGTP SITIQLPIYN EKYVAKRLVD SVCNLDYPQD KMRIMVLDDS DDDTVDLLAQ TVDDYKKKGF QIEHVRRGTR KGYKAGALKY AMQSTDTELV AIFDADFIPP TWFLKRAIPH FAKSNIGLVQ CRWGHVNENY SAITQAQALS LDFHFLIEQK AKSNSHLFMN FNGTAGIWKR DCIEDAGGWH TATLVEDLDL SYRAQMKGWK CVFLPDVVVD AELPVQMNAA KRQQFRWAKG SIQCALKLLT DITIKRKIAI EAKIQAFIQL TRHIVYPLML IQFLSLPILL AANVNLYVIS FLPALTIATY LAMGPGAYIM IIQSMYHKSW KSKAKILPAL LVYNAGMSVN NTVAVFDAVL GKKNEFLRTP KYGVLKKKDD WKDNAYNLPF SQVTLLELFF GVYGILGIFI SIFSNNPIFA PIIALQAIGF FYIAYLSLSH TRFKRNKSST PKIRSKKEKM ANLVYKLSMV GIVAIIIFGG SMAIYGYSTD IYPLDRMRGN LDGIIGSSDP AAIKAHLLAI QTDLTVVMEN LPETTNANGE VISKNPVWMF PTESTNFLRI ENAVETMTAS IEKISTVPKD SSAYHTGMLD INSRAVSLQT DIMDATPYMY VSIQNIAFST IWIAAILGIF AALKRKKDQL KEVDDVGV // ID A9A2R2_NITMS Unreviewed; 699 AA. AC A9A2R2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=V-type ATPase 116 kDa subunit {ECO:0000313|EMBL:ABX13589.1}; GN OrderedLocusNames=Nmar_1693 {ECO:0000313|EMBL:ABX13589.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13589.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13589.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13589.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13589.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1693; -. DR EnsemblBacteria; ABX13589; ABX13589; Nmar_1693. DR KEGG; nmr:Nmar_1693; -. DR eggNOG; arCOG04138; Archaea. DR eggNOG; COG1269; LUCA. DR HOGENOM; HOG000109092; -. DR KO; K02123; -. DR OMA; TPSYWEI; -. DR BioCyc; NMAR436308:GI3J-1738-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0033179; C:proton-transporting V-type ATPase, V0 domain; IEA:InterPro. DR GO; GO:0015078; F:hydrogen ion transmembrane transporter activity; IEA:InterPro. DR GO; GO:0015991; P:ATP hydrolysis coupled proton transport; IEA:InterPro. DR InterPro; IPR002490; V-ATPase_116kDa_su. DR Pfam; PF01496; V_ATPase_I; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 366 388 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 400 426 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 461 482 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 494 520 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 547 569 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 610 628 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 640 660 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 230 257 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 699 AA; 78044 MW; 25064CB8C1D1201D CRC64; MVVADLKLGS VILPRSESPR AISRLTEFEW FHKIDTENDL VTPEIDDLLL EAQKTYQSID DVVKGLGVPP TVGILEILFK GTMIKKKDYE IGEIEDLVED LKKKTPSVID EPAKLLEEQA DTKRGIEEYR SLKETLEIAK KLNIDLSGFG LMKYFYTNLF VIDSGDYEEI SRALEGITFY KYDLESKDKA AVLVICGIDD SEKALKVLRG FNANPFSIPD GMSQIPSEAY ATAEAKLKEL TAKQAQIAKQ LAKITKNIRR DILVLHEEAL VAKDVLETLR KPGGTKHFAL IQGFIPSKME EKFKNITSQW TSVTEEITDP KHQEQVPTLF DNKKFVRTFE VITESQGIPR KGEADPTPMI ALMWPIFYGL MFADTGHGLL LMGMGLLFKF KGQGNLSRWG MLIAISGAAS AIAGVGAGEA FGYHIYYFEP FKGLLAEGGP LYPVSFIVGI LSVAELSFEQ VINILKVSLF IGIIHLVWAM ILRIRRLARE GHKIVMYLEA IPNITLYGGI VVIMMCAIGS QYDVMNMYSK VHTEAVPWVT IFLGDWAQVW IVTRIAVVIV IASMAMMMVG GIMHAKKHPE DGGSAANVVM EVFLGKTVES LAHTISYARL GIMLLVHAAL LLTVNNAFNS LGGSESFGAW AMIIGGNLGI MMIEGLIVYI QSLRLHLYEY FTKWYDGGAQ PFRQVRPELI YNQFIWKRK // ID A9A439_NITMS Unreviewed; 167 AA. AC A9A439; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12223.1}; GN OrderedLocusNames=Nmar_0327 {ECO:0000313|EMBL:ABX12223.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12223.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12223.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12223.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12223.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0327; -. DR EnsemblBacteria; ABX12223; ABX12223; Nmar_0327. DR KEGG; nmr:Nmar_0327; -. DR eggNOG; arCOG08779; Archaea. DR eggNOG; ENOG4111075; LUCA. DR OMA; DEMEVSA; -. DR BioCyc; NMAR436308:GI3J-342-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 137 158 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 167 AA; 17734 MW; 78EA67DC258EB834 CRC64; MEKAGIILVV SGTLIVVGLI LLAAGNQVIL EGVFQGNGKI NSSQDLTISG EFNSEESATG VFAVQVMEFK ENTVSAKILD PFGNEIVSKN VDEETIEEEF DITDTGSYKL IIQTDSNEDI QVFGAIGPLP DAGKKSLSFV SAYILIIGMV GLVGSGIYKI KSKKKSV // ID A9A385_NITMS Unreviewed; 820 AA. AC A9A385; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Solute binding protein-like protein {ECO:0000313|EMBL:ABX12514.1}; GN OrderedLocusNames=Nmar_0618 {ECO:0000313|EMBL:ABX12514.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12514.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12514.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12514.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12514.1; -; Genomic_DNA. DR ProteinModelPortal; A9A385; -. DR STRING; 436308.Nmar_0618; -. DR EnsemblBacteria; ABX12514; ABX12514; Nmar_0618. DR KEGG; nmr:Nmar_0618; -. DR eggNOG; arCOG01672; Archaea. DR eggNOG; COG3889; LUCA. DR HOGENOM; HOG000108513; -. DR KO; K02035; -. DR OMA; YNDTRYE; -. DR BioCyc; NMAR436308:GI3J-642-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR000914; SBP_5_dom. DR Pfam; PF00496; SBP_bac_5; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 796 813 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 25 250 SBP_bac_5. {ECO:0000259|Pfam:PF00496}. SQ SEQUENCE 820 AA; 93518 MW; D1BCB84379505B40 CRC64; MKNMLVVILA LSIVIVGTNQ VFAEKNVFVD SVKFIQYLDE NTALEEVRNG NLDMYYYRIS SDRLENNQDR EGLHVFDSTG GSYSILVNPA EAEKFNPFSI KEIRFALNYL VDRKLIVNEL MGGYGSPIIS YYGPSDPEYL TILEELERFN FKYNPTLAQE IITSALKEKG AVKIDERWYM DESPIEIRMF IRSDDPVRKS IGEILAIELE KVGFSVKKDF GDLNKAFVVV YGSNPSDLKW SLYTEGWARS AFVRYDSVGL SQMYSPWFSN MPGFNDPSYW NYENVKMDEI TQKIYTGDFQ TSEDRSVLIQ DAVVEGINES VRIFLASKID QYVVNEKVSG VVNDFGAGVP SRFTPINAQS QNDELVIGVK QIYQGAWNPI MGLTDSYSRH IWGVVSDPGT FKHPFTGETF PIRTNWQIET AGPNGNLTVP TDAIIWNPVV QQWENIKPNT VAKSKIVFDF NFGNWHNGQK IDMNDIMHSL YFTIEWGTQT DENDKTFDAE FTPRAAQNIQ TIIGVNQIDE DTIEVYVDYW HFDEGEIADW AVIWNTMPWE ISAAMEKAVQ DGKVSFSRSG ATSKNVNWLS LIIPNDANLI KEYLQEFRDS NHIPVSLEKN NSESKYFQER FDSSIKWIEE NNHAVISNGP FYLESYAPES RTITISAFEN DMYPFKIGSW SEFENPKFPI ITGMEMNSII KKGEEFSIKI EAKNTDSILY FLTNNQGEMV SSQSLNMLGE KISINIDSTN SEKLQTGTGN VKIFAVSNSV LKPDFYETSF IVTEMKSELP SSSSEDIEFF ENKTGYEIWI IPIVIIVGVI IVLKKRQSKP // ID A9A241_NITMS Unreviewed; 243 AA. AC A9A241; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12454.1}; GN OrderedLocusNames=Nmar_0558 {ECO:0000313|EMBL:ABX12454.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12454.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12454.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12454.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12454.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0558; -. DR EnsemblBacteria; ABX12454; ABX12454; Nmar_0558. DR KEGG; nmr:Nmar_0558; -. DR eggNOG; arCOG08027; Archaea. DR eggNOG; ENOG410Y08E; LUCA. DR HOGENOM; HOG000105482; -. DR BioCyc; NMAR436308:GI3J-580-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 18 45 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 243 AA; 26309 MW; D6E35C8ED8706BA5 CRC64; MVITQMLINP RLSIQFMAAA KKQTKKDLED KIAELEAKLN SLSSQLSKPA EVKPAETKPA EVKPAETKPA ETKPAETKPA ETKPAETAKP KPTLPKGMGE KPAEAPKPEE APKPAETTAQ PPATVQDALE AAYYDAPMTD FHQYRAKVTG YSPAPNRYFV RMTAPVGKVP TSDWNQQKAS VTGYTACSNQ YYATRARLAY HPADKRFGTF SGVNMTVEGV AAQAQQAPTP EPPKPKGTLP KGF // ID A9A3W2_NITMS Unreviewed; 591 AA. AC A9A3W2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=Adenylate/guanylate cyclase with integral membrane sensor {ECO:0000313|EMBL:ABX13662.1}; GN OrderedLocusNames=Nmar_1766 {ECO:0000313|EMBL:ABX13662.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13662.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13662.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13662.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13662.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3W2; -. DR STRING; 436308.Nmar_1766; -. DR EnsemblBacteria; ABX13662; ABX13662; Nmar_1766. DR KEGG; nmr:Nmar_1766; -. DR eggNOG; arCOG02362; Archaea. DR eggNOG; arCOG07810; Archaea. DR eggNOG; ENOG410ZVTM; LUCA. DR HOGENOM; HOG000107533; -. DR OMA; GPTVNRC; -. DR BioCyc; NMAR436308:GI3J-1813-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0016849; F:phosphorus-oxygen lyase activity; IEA:InterPro. DR GO; GO:0004871; F:signal transducer activity; IEA:InterPro. DR GO; GO:0009190; P:cyclic nucleotide biosynthetic process; IEA:InterPro. DR GO; GO:0035556; P:intracellular signal transduction; IEA:InterPro. DR Gene3D; 3.30.70.1230; -; 1. DR InterPro; IPR001054; A/G_cyclase. DR InterPro; IPR003660; HAMP_dom. DR InterPro; IPR029787; Nucleotide_cyclase. DR Pfam; PF00211; Guanylate_cyc; 1. DR Pfam; PF00672; HAMP; 1. DR SMART; SM00044; CYCc; 1. DR SMART; SM00304; HAMP; 1. DR SUPFAM; SSF55073; SSF55073; 1. DR PROSITE; PS50125; GUANYLATE_CYCLASE_2; 1. DR PROSITE; PS50885; HAMP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 302 321 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 322 374 HAMP. {ECO:0000259|PROSITE:PS50885}. FT DOMAIN 402 533 Guanylate cyclase. FT {ECO:0000259|PROSITE:PS50125}. SQ SEQUENCE 591 AA; 66422 MW; EFB46F9DEEAFDEFE CRC64; MAISINLGKK LVLLVMLVTM TALGITSYMS IDYSAETLKQ RGGELLHGES DIRGESLRLL FETRIEQNKI LANDPMIRLL VSEMDGLSGQ ELKSMKEEKR RDFLIQVQAF QELAGFSIGF EDTKIIGNNG NVFFSLVGIS DEDFSQNEFF QRGLEGSFVD FEQSGMGKKM IVVSPVYAAD SKIGDEPIGV IISRMRTAAL DNILLNRSGL GETGEVYIVN KDFVMLSESR FFENAVFEQR VDTVGVQECF SNNMEHVGVY PDYRGISIYG SSYCMPEYGI VLLAEMDEEE LIEPIEILQT RIILTSLLII LAMGLVAFFA AESLSHPLRA LKKAANKIAD GNFEVRTNIK TRDEIADLSN AFDLMAQKLQ ESLIEIKQKD EVIKQLEGDM LLKFSQHEEN DCVGVIDMAD STRISSKLSD QDISKLYEIF LNFMAKIVLR HKGEVIKNIG DALMFRFANV DTSNDEELKN ILECCLDMTE SHGKLDEELK KANLPSLDYK ISLTYGPVKV AESTTSKISD VFGPTVNRCF KINSLCPKNS IVVGENVHNI FRDFSEYEFT ELCIIELKQK YGYNIFEVRR KGLDGFGSKS D // ID A9A280_NITMS Unreviewed; 196 AA. AC A9A280; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 22. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12791.1}; GN OrderedLocusNames=Nmar_0895 {ECO:0000313|EMBL:ABX12791.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12791.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12791.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12791.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12791.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12791; ABX12791; Nmar_0895. DR KEGG; nmr:Nmar_0895; -. DR eggNOG; arCOG10563; Archaea. DR eggNOG; ENOG41111EB; LUCA. DR BioCyc; NMAR436308:GI3J-923-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 196 AA; 23096 MW; B9D88445270CC4D0 CRC64; MNQTTRELIG MFSPMWTNKQ VWEFDQLNED LRFDAIYVKP QEYEDSLWKS KSAYPDSEIR DMVVKTFDHM LDGEELWISN VNEKKIDEKH IPYLMAVMAD VMIEEEICLN FRIDNECFVA TIDSDADVID CKEFFEEFYH LATGFNYDTD TGIPEDETEA EMYLTRLQEE FDEKMKAILG DKYLPGNNDP DTINAK // ID A9A3R8_NITMS Unreviewed; 174 AA. AC A9A3R8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 23. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13330.1}; GN OrderedLocusNames=Nmar_1434 {ECO:0000313|EMBL:ABX13330.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13330.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13330.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13330.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13330.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1434; -. DR EnsemblBacteria; ABX13330; ABX13330; Nmar_1434. DR KEGG; nmr:Nmar_1434; -. DR BioCyc; NMAR436308:GI3J-1469-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 174 AA; 19257 MW; 0D4CF4D38A96C80B CRC64; MKTEMKIKIT IISGIILAAI LFAGFSSSFM FPSPTCPAGT ILKNDVCVID DPATGLLVEK NEQCDIPYDE NFLKRRAINA SIAAEFSIYS TVTIDTYSVE NDTHSLILKP VPTSYGYITM CNPLPVLEQR FDTKLDSLAI LVDGVEIPYE MRNNVLRIDV NNNAIIEIVG FSKI // ID A9A5E6_NITMS Unreviewed; 169 AA. AC A9A5E6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Ribosomal protein L16 {ECO:0000313|EMBL:ABX12345.1}; GN OrderedLocusNames=Nmar_0449 {ECO:0000313|EMBL:ABX12345.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12345.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12345.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12345.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12345.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5E6; -. DR STRING; 436308.Nmar_0449; -. DR EnsemblBacteria; ABX12345; ABX12345; Nmar_0449. DR KEGG; nmr:Nmar_0449; -. DR eggNOG; arCOG04113; Archaea. DR eggNOG; COG0197; LUCA. DR HOGENOM; HOG000223755; -. DR KO; K02866; -. DR OMA; IITSGKW; -. DR BioCyc; NMAR436308:GI3J-468-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 3.90.1170.10; -; 1. DR InterPro; IPR001197; Ribosomal_L10e. DR InterPro; IPR016180; Ribosomal_L10e/L16. DR InterPro; IPR018255; Ribosomal_L10e_CS. DR Pfam; PF00252; Ribosomal_L16; 1. DR PIRSF; PIRSF005590; Ribosomal_L10; 1. DR SUPFAM; SSF54686; SSF54686; 1. DR PROSITE; PS01257; RIBOSOMAL_L10E; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12345.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX12345.1}. FT DOMAIN 13 156 Ribosomal_L16. FT {ECO:0000259|Pfam:PF00252}. SQ SEQUENCE 169 AA; 18974 MW; 577F0471FBADC80D CRC64; MHGANYREGN GQVFTRRKYI KGKPQIKIAK FQGGKRGTYQ YCVQLCINEK MQLRHMAIES TRLAANKTLE KTTGESGYYS RLRIYPHNML RENKQIATAG ADRISEGMRR AWGKATSLGA RVREGQCIME LYVNGDAHLA AAKKSLKSAC VKLPGTPTIK VLDWNKPSP // ID A9A5G3_NITMS Unreviewed; 140 AA. AC A9A5G3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ABX12674.1}; GN OrderedLocusNames=Nmar_0778 {ECO:0000313|EMBL:ABX12674.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12674.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12674.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12674.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12674.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5G3; -. DR STRING; 436308.Nmar_0778; -. DR EnsemblBacteria; ABX12674; ABX12674; Nmar_0778. DR KEGG; nmr:Nmar_0778; -. DR eggNOG; arCOG00606; Archaea. DR eggNOG; COG0517; LUCA. DR OMA; HTCDQCL; -. DR BioCyc; NMAR436308:GI3J-804-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 2. DR SMART; SM00116; CBS; 2. DR PROSITE; PS51371; CBS; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 65 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 73 128 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 140 AA; 15948 MW; 05ECAF791A3CBFB4 CRC64; MAHVRDIMQK NVITIEYDKT AHDAASILKE KEISFLVIIK DEKPIGVISE RDIVQKVTAE DQKASSVLIE DIMSKKFRWV SPDTPIEDAV QKMLNNNIRR LIILEDEKLV GVITQTNLAE FLRSKLLING MLDNIDSEKS // ID A9A281_NITMS Unreviewed; 109 AA. AC A9A281; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12792.1}; GN OrderedLocusNames=Nmar_0896 {ECO:0000313|EMBL:ABX12792.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12792.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12792.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12792.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12792.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12792; ABX12792; Nmar_0896. DR KEGG; nmr:Nmar_0896; -. DR eggNOG; arCOG10564; Archaea. DR eggNOG; ENOG41111EA; LUCA. DR BioCyc; NMAR436308:GI3J-924-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 109 AA; 12732 MW; 04F028E3569411BD CRC64; MSQKRPYRKF QKKGPSLSME QKVEKFILRN SENGFFTKVT TIPYKFEMSE SKAWDVVGEL LSEGKIESIH DEISGEMKLC KAGQAYSIMN SEQKRKRQKT NNFKKKKTT // ID A9A4G8_NITMS Unreviewed; 77 AA. AC A9A4G8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12657.1}; GN OrderedLocusNames=Nmar_0761 {ECO:0000313|EMBL:ABX12657.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12657.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12657.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12657.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12657.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0761; -. DR EnsemblBacteria; ABX12657; ABX12657; Nmar_0761. DR KEGG; nmr:Nmar_0761; -. DR eggNOG; arCOG10545; Archaea. DR eggNOG; ENOG41110EC; LUCA. DR BioCyc; NMAR436308:GI3J-787-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 77 AA; 8811 MW; 4F1237A7B514C7AA CRC64; MGIGTAEEYI DFFINLNMGE NVPLISFVNN EKMVLKQKLE NKNIPKEPIK KGIDILEQLA KEISEMGQDK VIAKYQK // ID A9A2A8_NITMS Unreviewed; 95 AA. AC A9A2A8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 38. DE SubName: Full=Ribosomal protein S26E {ECO:0000313|EMBL:ABX12819.1}; GN OrderedLocusNames=Nmar_0923 {ECO:0000313|EMBL:ABX12819.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12819.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12819.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12819.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12819.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0923; -. DR EnsemblBacteria; ABX12819; ABX12819; Nmar_0923. DR KEGG; nmr:Nmar_0923; -. DR eggNOG; arCOG04305; Archaea. DR eggNOG; COG4830; LUCA. DR HOGENOM; HOG000108824; -. DR KO; K02976; -. DR OMA; CYCISCA; -. DR BioCyc; NMAR436308:GI3J-951-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR InterPro; IPR000892; Ribosomal_S26e. DR PANTHER; PTHR12538; PTHR12538; 1. DR Pfam; PF01283; Ribosomal_S26e; 1. DR PROSITE; PS00733; RIBOSOMAL_S26E; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12819.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX12819.1}. SQ SEQUENCE 95 AA; 10537 MW; 0DBD01FD5CF9A873 CRC64; MPLKRASRGR TKGGKGSSGV VQCTNCGQTV PKDKAKKVTS RLNLVEHTLA KELRAQGAYI ASPTVLKWYC ISCAIHFKIL KIRSADNRRK RGKLR // ID A9A3Q6_NITMS Unreviewed; 94 AA. AC A9A3Q6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13318.1}; GN OrderedLocusNames=Nmar_1422 {ECO:0000313|EMBL:ABX13318.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13318.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13318.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13318.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13318.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Q6; -. DR STRING; 436308.Nmar_1422; -. DR EnsemblBacteria; ABX13318; ABX13318; Nmar_1422. DR KEGG; nmr:Nmar_1422; -. DR eggNOG; arCOG10584; Archaea. DR eggNOG; ENOG41110MM; LUCA. DR OMA; YERAFFG; -. DR BioCyc; NMAR436308:GI3J-1457-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR InterPro; IPR007457; Fe_traffick_prot_YggX. DR Pfam; PF04362; Iron_traffic; 1. DR ProDom; PD029191; Fe_traffick_prot_YggX; 1. DR SUPFAM; SSF111148; SSF111148; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 94 AA; 10958 MW; 1D752D91BC6989CE CRC64; MTRTCTKCKN EIPDTEQLGP VNEKYPTCNK CWAEWKEYQI MVMNELKLDM SMADHRKLLK KHEKIFVGVL SPEGEVIDYT NEDNRKPDEP QPGA // ID A9A5Q5_NITMS Unreviewed; 158 AA. AC A9A5Q5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13060.1}; GN OrderedLocusNames=Nmar_1164 {ECO:0000313|EMBL:ABX13060.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13060.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13060.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13060.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13060.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13060; ABX13060; Nmar_1164. DR KEGG; nmr:Nmar_1164; -. DR BioCyc; NMAR436308:GI3J-1196-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 158 AA; 17018 MW; A01434A4C4E42605 CRC64; MYLDSAAKYR IKIDVGQIIQ STVASQCERH LANNLNFLDH LTCSIANNAI EIIFNPPDNV TDKYLFELIT TTLQQAGVSY LRAILSIYVG SSGKTAGGTI LGALMGLKFG PIGGVLGAAA GAGAAKFLFD WKNLCECTDD ELGHLVIRDY GENHDGRH // ID A9A2B5_NITMS Unreviewed; 103 AA. AC A9A2B5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 36. DE SubName: Full=Small subunit ribosomal protein S25e {ECO:0000313|EMBL:ABX12826.1}; GN OrderedLocusNames=Nmar_0930 {ECO:0000313|EMBL:ABX12826.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12826.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12826.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12826.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12826.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0930; -. DR EnsemblBacteria; ABX12826; ABX12826; Nmar_0930. DR KEGG; nmr:Nmar_0930; -. DR eggNOG; arCOG04327; Archaea. DR eggNOG; COG4901; LUCA. DR KO; K02975; -. DR OMA; ISVANTF; -. DR BioCyc; NMAR436308:GI3J-958-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR InterPro; IPR004977; Ribosomal_S25. DR Pfam; PF03297; Ribosomal_S25; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000313|EMBL:ABX12826.1}; KW Ribosomal protein {ECO:0000313|EMBL:ABX12826.1}. SQ SEQUENCE 103 AA; 10917 MW; 3CFBA1010DDA5697 CRC64; MGGAKKPTAA KKDTSSSPKD SKKGKKDKGE GGPKKAEITV MVNEQQAMKI IQSAKVITVQ DMARQTGVKI SAANKFLKES AEKGIVKRVG GYSGHHLYQA VSS // ID A9A420_NITMS Unreviewed; 102 AA. AC A9A420; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABX12204.1}; GN OrderedLocusNames=Nmar_0308 {ECO:0000313|EMBL:ABX12204.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12204.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12204.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12204.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12204.1; -; Genomic_DNA. DR ProteinModelPortal; A9A420; -. DR STRING; 436308.Nmar_0308; -. DR EnsemblBacteria; ABX12204; ABX12204; Nmar_0308. DR KEGG; nmr:Nmar_0308; -. DR eggNOG; arCOG02852; Archaea. DR eggNOG; COG2146; LUCA. DR HOGENOM; HOG000128541; -. DR OMA; MIYVEID; -. DR BioCyc; NMAR436308:GI3J-322-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051537; F:2 iron, 2 sulfur cluster binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 2.102.10.10; -; 1. DR InterPro; IPR017941; Rieske_2Fe-2S. DR Pfam; PF00355; Rieske; 1. DR SUPFAM; SSF50022; SSF50022; 1. DR PROSITE; PS51296; RIESKE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 100 Rieske. {ECO:0000259|PROSITE:PS51296}. SQ SEQUENCE 102 AA; 10872 MW; A95605185F2FEC7D CRC64; MGKIIAGKIS DIPPGKMIKV SIDGRDILVA NIDGEYCATD DSCTHSGASL SEGKLDGCVV TCGWHAAEFD CKTGKLVKFP AKIRDLTSYN VTVESDSVFV EM // ID A9A4M8_NITMS Unreviewed; 314 AA. AC A9A4M8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABX13006.1}; GN OrderedLocusNames=Nmar_1110 {ECO:0000313|EMBL:ABX13006.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13006.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13006.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13006.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13006.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M8; -. DR STRING; 436308.Nmar_1110; -. DR EnsemblBacteria; ABX13006; ABX13006; Nmar_1110. DR KEGG; nmr:Nmar_1110; -. DR eggNOG; arCOG00984; Archaea. DR eggNOG; COG1454; LUCA. DR HOGENOM; HOG000106698; -. DR KO; K18602; -. DR OMA; CTTVAHK; -. DR BioCyc; NMAR436308:GI3J-1141-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR InterPro; IPR001670; ADH_Fe. DR Pfam; PF00465; Fe-ADH; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 271 Fe-ADH. {ECO:0000259|Pfam:PF00465}. SQ SEQUENCE 314 AA; 34583 MW; 78BF974E848B0B36 CRC64; MHTVRIPKVI NFGEDALGQT EYPKNALVVT TVPPELSDKW LAKMGIQDYM LYDKVKPEPS IDDVNTLISE FKEKKPSVLI GLGGGSSMDV VKYAAQDFGV EKILIPTTFG TGAEMTTYCV LKFDGKKKLL REDRFLADMA VVDSYFMDGT PEQVIKNSVC DACAQATEGY DSKLGNDLTR TLCKQAFEIL YDAIMNDKPE NYPYGSMLSG MGFGNCSTTL GHALSYVFSN EGVPHGYSLS SCTTVAHKHN KSIFYDRFKE AMDKLGFDKL ELKADVSEAA DVVMTDKGHL DPNPIPISKD DVVKCLEDIK AGNL // ID A9A5D2_NITMS Unreviewed; 81 AA. AC A9A5D2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12331.1}; GN OrderedLocusNames=Nmar_0435 {ECO:0000313|EMBL:ABX12331.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12331.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12331.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12331.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12331.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0435; -. DR EnsemblBacteria; ABX12331; ABX12331; Nmar_0435. DR KEGG; nmr:Nmar_0435; -. DR eggNOG; arCOG04414; Archaea. DR eggNOG; COG2892; LUCA. DR KO; K09741; -. DR BioCyc; NMAR436308:GI3J-453-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR015419; CTAG/Pcc1. DR Pfam; PF09341; Pcc1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 81 AA; 9191 MW; 32996587A19EE592 CRC64; MTLKFSAKIT VDAKDKTKAI FDSVNTDNEF YPENPVKTEI KLDKKMTISV ESEHLPHLRA NLNSTLRLIQ ASNETIESVK I // ID A9A274_NITMS Unreviewed; 105 AA. AC A9A274; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12785.1}; GN OrderedLocusNames=Nmar_0889 {ECO:0000313|EMBL:ABX12785.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12785.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12785.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12785.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12785.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12785; ABX12785; Nmar_0889. DR KEGG; nmr:Nmar_0889; -. DR eggNOG; arCOG10559; Archaea. DR eggNOG; ENOG41110IA; LUCA. DR BioCyc; NMAR436308:GI3J-917-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.1440.10; -; 1. DR InterPro; IPR027299; GIY-YIG_dom. DR InterPro; IPR000305; GIY-YIG_SF. DR SUPFAM; SSF82771; SSF82771; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 105 AA; 12621 MW; F36641244615D6D5 CRC64; MELLDDKMRV WLESAKFVKP NPGVYVLYNR SKHPIYIGET SNLEETFTKY VDTDFEDNEC MKKTQYYQRV FEDNPKELQL QLIEQFRNET NELPSCNSEI KVETR // ID A9A4C2_NITMS Unreviewed; 133 AA. AC A9A4C2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:ABX12611.1}; GN OrderedLocusNames=Nmar_0715 {ECO:0000313|EMBL:ABX12611.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12611.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12611.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12611.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12611.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4C2; -. DR STRING; 436308.Nmar_0715; -. DR MEROPS; M67.010; -. DR EnsemblBacteria; ABX12611; ABX12611; Nmar_0715. DR KEGG; nmr:Nmar_0715; -. DR eggNOG; arCOG01139; Archaea. DR eggNOG; COG1310; LUCA. DR HOGENOM; HOG000108445; -. DR OMA; HPNEGIL; -. DR BioCyc; NMAR436308:GI3J-741-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR028090; JAB_dom_prok. DR Pfam; PF14464; Prok-JAB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 16 111 Prok-JAB. {ECO:0000259|Pfam:PF14464}. SQ SEQUENCE 133 AA; 14743 MW; C6BBBF882464FD00 CRC64; MLFKKKKFER KVILNKEVLD SILSYCQMKH PNEGILILKG KSKNGEINID GLVIPPFNYT GPTFAGFPHS FLPFDMSYVG IVHSHPSGSA EPSVTDLHNF FGLVSLIVKS PYSDESVFAW DSSGNAIPLS IKQ // ID A9A5V8_NITMS Unreviewed; 92 AA. AC A9A5V8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13113.1}; GN OrderedLocusNames=Nmar_1217 {ECO:0000313|EMBL:ABX13113.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13113.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13113.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13113.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13113.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1217; -. DR EnsemblBacteria; ABX13113; ABX13113; Nmar_1217. DR KEGG; nmr:Nmar_1217; -. DR BioCyc; NMAR436308:GI3J-1250-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 92 AA; 10624 MW; AC079CD825ED4236 CRC64; MVQKLQCCSK TPDYLVTYSV SGSEKDYHVC SVCIKKECFS KYIIRRQIIE NNKKNFQNEQ SGISDESSGF SENFNEHTIQ NEQDNERGGF VL // ID A9A2G4_NITMS Unreviewed; 174 AA. AC A9A2G4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13203.1}; GN OrderedLocusNames=Nmar_1307 {ECO:0000313|EMBL:ABX13203.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13203.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13203.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13203.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13203.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2G4; -. DR STRING; 436308.Nmar_1307; -. DR EnsemblBacteria; ABX13203; ABX13203; Nmar_1307. DR KEGG; nmr:Nmar_1307; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR HOGENOM; HOG000023846; -. DR BioCyc; NMAR436308:GI3J-1340-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 98 173 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 174 AA; 19354 MW; 4DC0D3965B584591 CRC64; MKRSSKTMAV LVMIFAVSIV SLSINVASAQ AVPEWVKNTA LWYGEGIVSE GEFLNMIKFL IENEVIVIDN IKEPMPQVSD AQIIIPNGNY DVTGAGFYSP LNLEIPVGTT VTWTNDDSVP HNIQSIDVNG KVIQLFNSPP LNTGDRFEHV FEEEGVYKYY CSFHPWRVGL VTVS // ID A9A3A5_NITMS Unreviewed; 100 AA. AC A9A3A5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12534.1}; GN OrderedLocusNames=Nmar_0638 {ECO:0000313|EMBL:ABX12534.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12534.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12534.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12534.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12534.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12534; ABX12534; Nmar_0638. DR KEGG; nmr:Nmar_0638; -. DR eggNOG; arCOG08725; Archaea. DR eggNOG; ENOG411100S; LUCA. DR BioCyc; NMAR436308:GI3J-663-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 100 AA; 11886 MW; 8EE6B865EE22F509 CRC64; MRKILDKFVT GFFVVTLGIA WYCSTKFYIK PDKHSIVVYD VFGKEVKLEG VRVDFKTQNV AQSYISEYKK RFPHYNFAMA IEIPEIKKNT IPRIFKKIQR // ID A9A515_NITMS Unreviewed; 271 AA. AC A9A515; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 45. DE SubName: Full=Inositol monophosphatase {ECO:0000313|EMBL:ABX11924.1}; GN OrderedLocusNames=Nmar_0024 {ECO:0000313|EMBL:ABX11924.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11924.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11924.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11924.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11924.1; -; Genomic_DNA. DR ProteinModelPortal; A9A515; -. DR STRING; 436308.Nmar_0024; -. DR EnsemblBacteria; ABX11924; ABX11924; Nmar_0024. DR KEGG; nmr:Nmar_0024; -. DR eggNOG; ENOG4102TSS; Archaea. DR eggNOG; COG1218; LUCA. DR HOGENOM; HOG000282237; -. DR KO; K01082; -. DR OMA; CYVRLGP; -. DR BioCyc; NMAR436308:GI3J-24-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0046854; P:phosphatidylinositol phosphorylation; IEA:InterPro. DR InterPro; IPR000760; Inositol_monophosphatase. DR InterPro; IPR020550; Inositol_monophosphatase_CS. DR PANTHER; PTHR20854; PTHR20854; 1. DR Pfam; PF00459; Inositol_P; 1. DR PRINTS; PR00377; IMPHPHTASES. DR PROSITE; PS00630; IMP_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 271 AA; 30199 MW; 997D87021C3CB90E CRC64; MKNLPILDKI PELDIAIKAA QEAGSAILEI YKGKFEEFTK KDDSPITEAD LKSNEIIKGI LSQTKFCILS EEDKDDQSRL SEEVIWIVDP LDGTSDFIDK TGEFTVMIAL VKNKKPILGV IGWPTEKTLF VAQEGKGAFR YSNEEWKKIS VTTTKELSEC RTVGSRHHLS EKEKAFIKKL GIEDFTSIGS SLKVGKIASG EAEAYITTTD KMKEWDSAAS HCIISEAGGK MTDMLGNNIS YNNREVHHQN GILVTNGIIH QTIVDEFKKL E // ID A9A5H7_NITMS Unreviewed; 82 AA. AC A9A5H7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12688.1}; GN OrderedLocusNames=Nmar_0792 {ECO:0000313|EMBL:ABX12688.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12688.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12688.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12688.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12688.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12688; ABX12688; Nmar_0792. DR KEGG; nmr:Nmar_0792; -. DR eggNOG; arCOG08711; Archaea. DR eggNOG; ENOG41110B9; LUCA. DR HOGENOM; HOG000107355; -. DR OMA; RANRYCV; -. DR BioCyc; NMAR436308:GI3J-818-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 82 AA; 9561 MW; 07D51C98A713B172 CRC64; MVRTRRANRY CVDCSARLVY YPRLSNPKAP NEHRVLVYAC PDCTDDFEKP KMFSIKRNQV EDPLETVEIE ITQLQKKAAT AK // ID A9A1Q0_NITMS Unreviewed; 346 AA. AC A9A1Q0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13565.1}; GN OrderedLocusNames=Nmar_1669 {ECO:0000313|EMBL:ABX13565.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13565.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13565.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13565.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13565.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1669; -. DR EnsemblBacteria; ABX13565; ABX13565; Nmar_1669. DR KEGG; nmr:Nmar_1669; -. DR OMA; SENWNTI; -. DR BioCyc; NMAR436308:GI3J-1714-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 168 189 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 209 227 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 239 259 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 279 298 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 318 337 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 346 AA; 39537 MW; 6695E4CD802FAB7C CRC64; MYKFSLKKQS SIVVIFFVLT FLYLFSSSNS YAHLEQSSSG GVMEGKYYSY IGFEPRNPTP GENSKIIFSI QDEHGNDLYE LETMLEIYST NMEKRLFYEP WTKRAIGDFE IPYVFEDKGT YQIVLSISEK NNTKEHVMPP RQIPSSSFNC DCTRVLFNVS VSENWNTIWN SLMVIVVILP FGVFGYALLN NYKNKTSKRK LGRYETLRYI MMFLALSGGV IHLSVYVDHV PLRIEYGMFL LLAAISQIGF GVLLLSVLLT DSTGMQKNTC ILRRRNTTVY LFGLLGSLVL LGLYIYAVNF TPPLSPENHP EHIEISGIVA KSLEISLIGV ILYVLYLENK IKQIML // ID A9A576_NITMS Unreviewed; 145 AA. AC A9A576; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12275.1}; GN OrderedLocusNames=Nmar_0379 {ECO:0000313|EMBL:ABX12275.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12275.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12275.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12275.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12275.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0379; -. DR EnsemblBacteria; ABX12275; ABX12275; Nmar_0379. DR KEGG; nmr:Nmar_0379; -. DR BioCyc; NMAR436308:GI3J-395-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 145 AA; 17141 MW; C118E86B0F00DC21 CRC64; MKAMFFAIVV AIIAFFLLQT VLPFPYGLVV GLGLVIGIIW YAKKQKTFQK DSVLNYRRVD PINEEERAQN DEALRILEKK YIEEKISKYE YLRLKKEFED LEYNPRKCES CGSEDFEFIS EERIEEPGEH TSDIGYYKCM RCGKR // ID A9A1G8_NITMS Unreviewed; 162 AA. AC A9A1G8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 38. DE SubName: Full=PBS lyase HEAT domain protein repeat-containing protein {ECO:0000313|EMBL:ABX13147.1}; GN OrderedLocusNames=Nmar_1251 {ECO:0000313|EMBL:ABX13147.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13147.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13147.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13147.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13147.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G8; -. DR STRING; 436308.Nmar_1251; -. DR EnsemblBacteria; ABX13147; ABX13147; Nmar_1251. DR KEGG; nmr:Nmar_1251; -. DR eggNOG; arCOG04006; Archaea. DR eggNOG; COG1413; LUCA. DR HOGENOM; HOG000107602; -. DR OMA; FVRHEAA; -. DR BioCyc; NMAR436308:GI3J-1284-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW. DR Gene3D; 1.25.10.10; -; 1. DR InterPro; IPR011989; ARM-like. DR InterPro; IPR016024; ARM-type_fold. DR InterPro; IPR004155; PBS_lyase_HEAT. DR SMART; SM00567; EZ_HEAT; 3. DR SUPFAM; SSF48371; SSF48371; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX13147.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 162 AA; 18034 MW; E021CDD3282171E5 CRC64; MQVVTDDRLT LFAEMEKKYE QKDTEYFVKL LDHPDYVVRT RATCILVDFG GEDKVPYIAK VLKDDDNELV RHEAAFSLGQ MCYSSSVPPL TDATLNDPSM FVRHEAAIAL GVVGNKDAKD ALEKALDDPD KPVVESAVVA LSNIEFMEKL SMNEKFAKLT GG // ID A9A2H7_NITMS Unreviewed; 815 AA. AC A9A2H7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 59. DE SubName: Full=DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABX13216.1}; GN OrderedLocusNames=Nmar_1320 {ECO:0000313|EMBL:ABX13216.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13216.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13216.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13216.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13216.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H7; -. DR STRING; 436308.Nmar_1320; -. DR EnsemblBacteria; ABX13216; ABX13216; Nmar_1320. DR KEGG; nmr:Nmar_1320; -. DR eggNOG; arCOG00555; Archaea. DR eggNOG; COG1205; LUCA. DR HOGENOM; HOG000250411; -. DR KO; K06877; -. DR OMA; AEHATIG; -. DR BioCyc; NMAR436308:GI3J-1353-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR018973; DEAD/DEAH-box_helicase. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF09369; DUF1998; 1. DR Pfam; PF00271; Helicase_C; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX13216.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Helicase {ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX13216.1}; KW Hydrolase {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX13216.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX13216.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 127 305 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 325 479 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. SQ SEQUENCE 815 AA; 92702 MW; 10B93417FCD7CF36 CRC64; MHVSCSGCGI EDLLEFSKNV DEVFLEFLSR YDKGLVTEKG LSEGLKDEGI VRAEVEIKNM IGKNKPDKIT EEILYSKKDY VSQYKVLSNP EPKMGCKVED LGLDESITEH LKELEIKQFY KFQEEAISEI AYGENVVIEA PTASGKTEAF LIPVIQRIKK DSSEGNVFAI FVYPTKALAR DQFPKIKKFV EKIGVRVEVF DGDTKQNDRR EIIDNPPQIL VTNFDVLHYH MWHQTKFSSL LTTTRIIVTD EAHVYSGIFG SNVHYIIKRL KRVCTNKLQF VAASATLEDA KEFCEKLFGE KMQKIQGSGK KGQTDFAMLF PSLRTQRALM VELTKKLTEK NHKTMVFNNS HLNSELLAIQ AKKQKVNIKV HRAGLMANYR TFVEKQFKDD LLDAISCTPT LELGIDVGNV DCVISSTIPV NRLIQRIGRA ARKGQRGYAF LALGNDPISQ YYKNHPDDYF EDTEKTYIDP KNPFVEEFQV LAMACDRPIS KHELKEHQEV IEHHIIKENL KEFNNRIIPN FDKINSLLNE YSIRGIGQSI DIFLNGKKVG DRILPIALEE LHKDAIYFLA GIRYKVKEFD YPEKNYAKIE KIPRDYPYYT KALTEEWPTI ETVFDKRIAN GVEVAFCKLH IEKKVYGYVN IELGQEVTQG EKVLLDTPLE YDFVTKGIVF HAPRPLKVMG ESEDEEYTEA SGYHATEHVV IEGSNMITGG VSQDLGGISL GTSGLIFIYD GAIGGSGASK ALYDRFEQAL ERSMFIVKEC PCKNEAGCPR CTFSYRCGNN NEYLHKYSAL EILERINKGE KTELVDPTEG DRPLV // ID A9A3C3_NITMS Unreviewed; 417 AA. AC A9A3C3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX12552.1}; GN OrderedLocusNames=Nmar_0656 {ECO:0000313|EMBL:ABX12552.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12552.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12552.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12552.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12552.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3C3; -. DR STRING; 436308.Nmar_0656; -. DR EnsemblBacteria; ABX12552; ABX12552; Nmar_0656. DR KEGG; nmr:Nmar_0656; -. DR eggNOG; ENOG4102TTJ; Archaea. DR eggNOG; ENOG410XR0Q; LUCA. DR OMA; QHEGTIN; -. DR BioCyc; NMAR436308:GI3J-681-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12552.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12552.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 29 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 169 194 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 216 417 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 417 AA; 46974 MW; D6D41F66985267E8 CRC64; MNTRHLIPIL VSIQIILIIA SFLSLSHFVN EHTIFENSVL LVSELKQHSD VLIFEVHKYV NGVPYADPEN SIIHMEEEFN ILKNGGVSHN LTLNPLPTKF LNAHNIAQTK LIVYTNYVGE ILKEENPKFG FNDLIFTNLD TAKFDTNGAL DYLLSLMLEE NKIYSKNLLI LQIGLAILNV GVHVMVLLII LDLLRKQSEK ERRLEKLASI GELASRVSHD IRNPLTTIKG VVDLLTSQKS TVTDEKDIQR LELIKKSVTQ INHQVEDVLD YVRTNKISLE KTSLLEIINL AAKRVSIPDS VEVSYPEKDY TIRCDKLKME IVFVNLLLNA VDAVRREGKI AIRMKSVDNF IEIQVEDSGP GIDSESISEI FEPLFTLKQK GTGLGLASCK NIIEQHEGTI NVSNNPTTFT IMIPSNL // ID A9A528_NITMS Unreviewed; 237 AA. AC A9A528; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 53. DE RecName: Full=7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; DE Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917}; DE EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917}; DE AltName: Full=Archaeosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; GN Name=queE {ECO:0000256|HAMAP-Rule:MF_00917}; GN OrderedLocusNames=Nmar_0037 {ECO:0000313|EMBL:ABX11937.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11937.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11937.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11937.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the complex heterocyclic radical-mediated CC conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- CC carboxy-7-deazaguanine (CDG), a step common to the biosynthetic CC pathways of all 7-deazapurine-containing compounds. CC {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- CATALYTIC ACTIVITY: 6-carboxy-5,6,7,8-tetrahydropterin = 7- CC carboxy-7-carbaguanine + NH(3). {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00917}; CC -!- COFACTOR: CC Name=S-adenosyl-L-methionine; Xref=ChEBI:CHEBI:59789; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00917}; CC Note=Binds 1 S-adenosyl-L-methionine per subunit. CC {ECO:0000256|HAMAP-Rule:MF_00917}; CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00917}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|HAMAP-Rule:MF_00917}; CC -!- PATHWAY: Purine metabolism; 7-cyano-7-deazaguanine biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00917}. CC -!- SIMILARITY: Belongs to the radical SAM superfamily. 7-carboxy-7- CC deazaguanine synthase family. {ECO:0000256|HAMAP-Rule:MF_00917}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11937.1; -; Genomic_DNA. DR ProteinModelPortal; A9A528; -. DR STRING; 436308.Nmar_0037; -. DR EnsemblBacteria; ABX11937; ABX11937; Nmar_0037. DR KEGG; nmr:Nmar_0037; -. DR eggNOG; arCOG02173; Archaea. DR eggNOG; COG0602; LUCA. DR HOGENOM; HOG000110542; -. DR OMA; RCHFCDS; -. DR BioCyc; NMAR436308:GI3J-37-MONOMER; -. DR UniPathway; UPA00391; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0016840; F:carbon-nitrogen lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:1904047; F:S-adenosyl-L-methionine binding; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00917; QueE; 1. DR InterPro; IPR024924; 7-CO-7-deazaguanine_synth-like. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00917}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00917}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00917}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00917}; KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00917}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00917}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|HAMAP-Rule:MF_00917}. FT DOMAIN 26 111 Radical_SAM. {ECO:0000259|Pfam:PF04055}. FT REGION 12 14 Substrate binding. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT REGION 155 157 S-adenosyl-L-methionine binding. FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 31 31 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 35 35 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 38 38 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|HAMAP-Rule:MF_00917}. FT METAL 40 40 Magnesium. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT BINDING 27 27 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT BINDING 75 75 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT BINDING 77 77 S-adenosyl-L-methionine; via carbonyl FT oxygen. {ECO:0000256|HAMAP- FT Rule:MF_00917}. FT BINDING 237 237 Substrate; via carboxylate. FT {ECO:0000256|HAMAP-Rule:MF_00917}. SQ SEQUENCE 237 AA; 26859 MW; E68EF6AB3E545E95 CRC64; MKVRLFEIFT SVEGEGILYG TKTLFVRLAG CPFTCFYCDT KESLPLDSGT EYSIEDANQL IDSNLKNQTY KVNFTGGDPL IQHQAVALLA KHIQEKKIPT YLESSCFDID RFNHVLPFID IVKIEFKTKD SDFVDSQHYE KLIGHTMKCL ESSVSAKKIT YIKVVVSSKT KPDDFTQLVN QIFDIVSKDD IDGFIIQPTY GVAEPSLDLL LSLYDIVFPH YNEVKVVPQL HKFIGAP // ID A9A2D8_NITMS Unreviewed; 131 AA. AC A9A2D8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABX12849.1}; GN OrderedLocusNames=Nmar_0953 {ECO:0000313|EMBL:ABX12849.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12849.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12849.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12849.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12849.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2D8; -. DR STRING; 436308.Nmar_0953; -. DR EnsemblBacteria; ABX12849; ABX12849; Nmar_0953. DR KEGG; nmr:Nmar_0953; -. DR eggNOG; arCOG02706; Archaea. DR eggNOG; COG0346; LUCA. DR HOGENOM; HOG000232024; -. DR KO; K05606; -. DR OMA; IHHICYE; -. DR BioCyc; NMAR436308:GI3J-981-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051213; F:dioxygenase activity; IEA:UniProtKB-KW. DR Gene3D; 3.10.180.10; -; 1. DR InterPro; IPR029068; Glyas_Bleomycin-R_OHBP_Dase. DR InterPro; IPR017515; MeMalonyl-CoA_epimerase. DR SUPFAM; SSF54593; SSF54593; 1. DR TIGRFAMs; TIGR03081; metmalonyl_epim; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Dioxygenase {ECO:0000313|EMBL:ABX12849.1}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12849.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 131 AA; 14339 MW; 0BB1C843FEAA1097 CRC64; MKIDHIAIAV NDVEESAKVY QQALGVDSVE FETVESEGVK VAIIHLENGR VELMQPTNDN SPIKKFLEKK GQGLHHMALE TDNIEGEVER MEGCGVQFLG QIRPGSAGTK VTFIHPKSLH GVLAELCAHP K // ID A9A3H2_NITMS Unreviewed; 743 AA. AC A9A3H2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 54. DE SubName: Full=D-alanine--D-alanine ligase {ECO:0000313|EMBL:ABX12904.1}; DE EC=6.3.2.4 {ECO:0000313|EMBL:ABX12904.1}; GN OrderedLocusNames=Nmar_1008 {ECO:0000313|EMBL:ABX12904.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12904.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12904.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12904.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12904.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3H2; -. DR STRING; 436308.Nmar_1008; -. DR EnsemblBacteria; ABX12904; ABX12904; Nmar_1008. DR KEGG; nmr:Nmar_1008; -. DR eggNOG; arCOG01107; Archaea. DR eggNOG; ENOG4102TEY; Archaea. DR eggNOG; COG0624; LUCA. DR eggNOG; COG1181; LUCA. DR KO; K01921; -. DR OMA; SGPETHA; -. DR BioCyc; NMAR436308:GI3J-1036-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0008716; F:D-alanine-D-alanine ligase activity; IEA:UniProtKB-EC. DR GO; GO:0016787; F:hydrolase activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 2. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR011095; Dala_Dala_lig_C. DR InterPro; IPR002933; Peptidase_M20. DR InterPro; IPR016185; PreATP-grasp_dom. DR Pfam; PF07478; Dala_Dala_lig_C; 1. DR Pfam; PF01546; Peptidase_M20; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR PROSITE; PS50975; ATP_GRASP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX12904.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 143 342 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 743 AA; 83812 MW; 1A8083B0A41AB02E CRC64; MDSQIPTKLK LNTIKKYCEY LMKVSLIYNE KKIDPNDVIN VFGMTTKEHY SSKAVERVAR ALEKGGHSVK VIEGDIHLAD ELREFMPKVV SGEKPGMVFN MAYGIQGQNR YTHVPAMMEM LGIPYIGSGP AGHAIVQDKV MTKIVLQKNN IPTPGFWVFK TPDDKFDDLV FPVIVKPKLE STSMGMEVVD NWDDLRNAVK VQIEKYQQDI LVEQFISGRE FAVGLIGNSP NIEVLPIVEI NLGDPDKIQT ISDKKKTGGV DKTCPAKLSK EKTEYMKKIC IDAFTALGLN DYTRVDFRMD KDENIYILEL NSMASLGMGG SLFYAAKTAG YTYESLINKI LDVATMRYFG SSQLPETEHE PDLTQPLRIV ARTYLRSHLQ NQKDTLKDFV NLNTHVHNID NVNKLGTMLS RRMKHLGFSE HLHRQFEIGD FHYFKNHEDE KNDVLIISHM DTHYGPNDLI SYFEDDDRIY GSGIAESKGG LTVMLGALHA LRFAKRLKKI KCGVLLTTDD SLGGRFSKKL VQQYSKKSKY VIGLKSASKD GGIITTCYGR NDYQIRFTTP NSTSSDIHGI IPILGKKITA IEKLSKDEKN YRLRTTSVIA QGTHGHAPNY ATLSIVCSFK TPALGKTMDS KIRTIMQKKE SGQKNLEVAI NQIQTRPPVI EEESDKKFYE QVEDLAKKHE LKIRRHEQIM SSDISNVPSR LPALDGFGPV GHKYRSTQEY ILHDSITERS ALLASVLYRC SGN // ID A9A4L5_NITMS Unreviewed; 148 AA. AC A9A4L5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 40. DE SubName: Full=DoxX family protein {ECO:0000313|EMBL:ABX12993.1}; GN OrderedLocusNames=Nmar_1097 {ECO:0000313|EMBL:ABX12993.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12993.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12993.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12993.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12993.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1097; -. DR EnsemblBacteria; ABX12993; ABX12993; Nmar_1097. DR KEGG; nmr:Nmar_1097; -. DR eggNOG; arCOG08092; Archaea. DR eggNOG; COG2259; LUCA. DR HOGENOM; HOG000198397; -. DR KO; K15977; -. DR BioCyc; NMAR436308:GI3J-1128-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR032808; DoxX. DR Pfam; PF07681; DoxX; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 70 97 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 117 136 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 148 AA; 16217 MW; 1CEB318B11EDA23A CRC64; MIFQRPESMN TEATLKGNVL HDITHWGISA SIGVTFIVHS IKKFDPGWQE WLISIGIPPE LQLPIALAEF IGGVLLVVGV LSRISAVILS VILLGAIFHI RWENGFFVSK GGWEWDLVML AATLAIIAAG PGRISISHVA KKIPRFLQ // ID A9A229_NITMS Unreviewed; 456 AA. AC A9A229; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 49. DE SubName: Full=Aminotransferase class I and II {ECO:0000313|EMBL:ABX12442.1}; GN OrderedLocusNames=Nmar_0546 {ECO:0000313|EMBL:ABX12442.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12442.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12442.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12442.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326; CC Evidence={ECO:0000256|RuleBase:RU000479}; CC -!- SIMILARITY: Belongs to the class-I pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU000479}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12442.1; -; Genomic_DNA. DR ProteinModelPortal; A9A229; -. DR STRING; 436308.Nmar_0546; -. DR EnsemblBacteria; ABX12442; ABX12442; Nmar_0546. DR KEGG; nmr:Nmar_0546; -. DR eggNOG; arCOG01130; Archaea. DR eggNOG; COG0436; LUCA. DR HOGENOM; HOG000105538; -. DR KO; K00812; -. DR OMA; MESIVSC; -. DR BioCyc; NMAR436308:GI3J-568-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR GO; GO:0046417; P:chorismate metabolic process; IEA:InterPro. DR Gene3D; 1.20.59.10; -; 1. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR002701; Chorismate_mutase. DR InterPro; IPR020822; Chorismate_mutase_type_II. DR InterPro; IPR004838; NHTrfase_class1_PyrdxlP-BS. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR Pfam; PF01817; CM_2; 1. DR SMART; SM00830; CM_2; 1. DR SUPFAM; SSF48600; SSF48600; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR PROSITE; PS00105; AA_TRANSFER_CLASS_1; 1. DR PROSITE; PS51168; CHORISMATE_MUT_2; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000256|RuleBase:RU000481, KW ECO:0000313|EMBL:ABX12442.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU000479}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU000481, KW ECO:0000313|EMBL:ABX12442.1}. FT DOMAIN 1 89 Chorismate mutase. FT {ECO:0000259|PROSITE:PS51168}. SQ SEQUENCE 456 AA; 51320 MW; 4B62250B9F8E31A5 CRC64; MSDINDLRNK MDEVTLQMIK LLKDRTDIAK QIGEVKKNIG KGVTDESRED NLREKVISLG QEIGLDEKIA TKFLNFLLNE SIKVQSSNKQ THLSIFLKAK ELEQQGKNII HMEVGEPDFL PPTIVKDALE EVYDKGFLKY GQAKGMPIFR EALAKHVNKK FNANVSQENI IVSPGARFSI FTAITTLLNP GDEIVVIEPA WPAYKDCALN SGIKVRTINT SFENKWEPSI EQIQNTINSN TKMIVLNYPN NPTGKILPEK LQDQIIEIAK KNNLYVLSDE IYSEYVKSSW KSILSYNYEK SIVTQSFSKS HAMTGFRIGY AIADANVIEK MSKLEALCLT NVSEPIQYIA MKALEADTSN NNKTVQSRLD VLIQKANEMN LDIIVPDGAM YIFARVNKEG FDGVQFANNI LERGLAVAPG EGFGDYKNFI RISACQDEKT LIEGMNILKE IMSEDQ // ID A9A3J5_NITMS Unreviewed; 136 AA. AC A9A3J5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12927.1}; GN OrderedLocusNames=Nmar_1031 {ECO:0000313|EMBL:ABX12927.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12927.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12927.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12927.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12927.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12927; ABX12927; Nmar_1031. DR KEGG; nmr:Nmar_1031; -. DR eggNOG; arCOG08678; Archaea. DR eggNOG; ENOG41111NP; LUCA. DR HOGENOM; HOG000106215; -. DR OMA; DMEGLLC; -. DR BioCyc; NMAR436308:GI3J-1062-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR011031; Multihaem_cyt. DR SUPFAM; SSF48695; SSF48695; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 136 AA; 16047 MW; 93CD0765A3927557 CRC64; MGLFSRKPSF CTICDKELTH KHKPKREWNI KGPLCGECHF EKQKEYYEGK VRQPCVECGK TQKITDLWEP RWQWDMEGLL CKPCFDKKEE SHGKKKNFCS LCGGKMGLIR YNPKGKWKID GQLCRKCWDE KKAELG // ID A9A5I8_NITMS Unreviewed; 68 AA. AC A9A5I8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE RecName: Full=50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; GN Name=rpl29p {ECO:0000256|HAMAP-Rule:MF_00374}; GN OrderedLocusNames=Nmar_0803 {ECO:0000313|EMBL:ABX12699.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12699.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12699.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12699.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the ribosomal protein L29P family. CC {ECO:0000256|HAMAP-Rule:MF_00374}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12699.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5I8; -. DR STRING; 436308.Nmar_0803; -. DR EnsemblBacteria; ABX12699; ABX12699; Nmar_0803. DR KEGG; nmr:Nmar_0803; -. DR eggNOG; arCOG00785; Archaea. DR eggNOG; COG0255; LUCA. DR HOGENOM; HOG000107333; -. DR KO; K02904; -. DR OMA; LREMNDQ; -. DR BioCyc; NMAR436308:GI3J-830-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.287.310; -; 1. DR HAMAP; MF_00374; Ribosomal_L29; 1. DR InterPro; IPR001854; Ribosomal_L29. DR Pfam; PF00831; Ribosomal_L29; 1. DR SUPFAM; SSF46561; SSF46561; 1. DR TIGRFAMs; TIGR00012; L29; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00374, KW ECO:0000313|EMBL:ABX12699.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00374, KW ECO:0000313|EMBL:ABX12699.1}. SQ SEQUENCE 68 AA; 7935 MW; D4C0B3FF956A8783 CRC64; MTRISMKTIK QLNEKDLKSK IQESRSELGK LRVDAAKGTL RKESGKLKPI RHDIARMLTR LNEMKKEK // ID A9A2C2_NITMS Unreviewed; 366 AA. AC A9A2C2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 47. DE SubName: Full=Aldo/keto reductase {ECO:0000313|EMBL:ABX12833.1}; GN OrderedLocusNames=Nmar_0937 {ECO:0000313|EMBL:ABX12833.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12833.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12833.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12833.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12833.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2C2; -. DR STRING; 436308.Nmar_0937; -. DR EnsemblBacteria; ABX12833; ABX12833; Nmar_0937. DR KEGG; nmr:Nmar_0937; -. DR eggNOG; arCOG01623; Archaea. DR eggNOG; COG0667; LUCA. DR HOGENOM; HOG000108146; -. DR OMA; AIQLPFN; -. DR BioCyc; NMAR436308:GI3J-965-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.20.20.100; -; 1. DR InterPro; IPR001395; Aldo/ket_red/Kv-b. DR InterPro; IPR023210; NADP_OxRdtase_dom. DR PANTHER; PTHR11732; PTHR11732; 2. DR Pfam; PF00248; Aldo_ket_red; 1. DR SUPFAM; SSF51430; SSF51430; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 35 299 Aldo_ket_red. {ECO:0000259|Pfam:PF00248}. SQ SEQUENCE 366 AA; 40982 MW; 4EB1C35805635097 CRC64; MISGFATPEG TKQFAQNSGV NQDNFKEFEN LTLSNIGIGT YLGDPDTRTD ELVSGAVKQS ILSGVNVIDT AINYRSQKAE RSVGKAISEL IQENKISRDQ IFVSTKNGYV TNDADVQLGF WEYVKEEYTQ KGVVKEGDIT SGYHCMTPAY LSDQLDRSLK NLDLECVDLM YLHNAVEGQI KDVSREQFLQ NLQTVFELYE QKRDEGKIKF YGMATWECFR VSTDNPQYLS LEDTVNMAKK VGGENHGFKF IQLPFNLYYD QALLGKTQTI QNNPVSVLES ATRLGIGVFT SVPLMQGRLL QPGVMPEFSD LKPSMRALQF IRSSPGVIAP LVGQKSAEHV SENLEVMKIP PYSDEEFLSL VKKLTS // ID A9A5F7_NITMS Unreviewed; 142 AA. AC A9A5F7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12668.1}; GN OrderedLocusNames=Nmar_0772 {ECO:0000313|EMBL:ABX12668.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12668.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12668.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12668.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12668.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5F7; -. DR EnsemblBacteria; ABX12668; ABX12668; Nmar_0772. DR KEGG; nmr:Nmar_0772; -. DR eggNOG; arCOG08713; Archaea. DR eggNOG; ENOG411104B; LUCA. DR HOGENOM; HOG000107455; -. DR OMA; ITERYEP; -. DR BioCyc; NMAR436308:GI3J-798-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR005031; COQ10_START. DR Pfam; PF03364; Polyketide_cyc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 136 Polyketide_cyc. FT {ECO:0000259|Pfam:PF03364}. SQ SEQUENCE 142 AA; 16398 MW; A07933D430BD8AE9 CRC64; MPQFSFEKTS TASRDAVYRV FSDYENYQRT SPEFFPSIRI RSVRNNVAVV EEHMNLGDEE FVIMAKHVTD EPVLHDVYVI GGDAKGSHIQ EQFIETPEGT KILVDVDLKL KGKMKLGGMF SKNRYQENYE EILDNFIKIA EN // ID A9A3J0_NITMS Unreviewed; 101 AA. AC A9A3J0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12922.1}; GN OrderedLocusNames=Nmar_1026 {ECO:0000313|EMBL:ABX12922.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12922.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12922.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12922.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12922.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1026; -. DR EnsemblBacteria; ABX12922; ABX12922; Nmar_1026. DR KEGG; nmr:Nmar_1026; -. DR eggNOG; arCOG08680; Archaea. DR eggNOG; ENOG411107D; LUCA. DR HOGENOM; HOG000106237; -. DR OMA; WNLIRED; -. DR BioCyc; NMAR436308:GI3J-1057-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 41 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 101 AA; 10885 MW; B5423167DBB2C94B CRC64; MPAMAVLGKM ELTSGQKGGL IFGGALIVAG LVLSTIVFPF WNLIREDVNE EVEILTNDNG QCYVETSDNI PKIIEDCTLQ PGDVVTITYG EGLAWAKITE P // ID A9A3W9_NITMS Unreviewed; 547 AA. AC A9A3W9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABX13669.1}; GN OrderedLocusNames=Nmar_1773 {ECO:0000313|EMBL:ABX13669.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13669.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13669.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13669.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13669.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3W9; -. DR STRING; 436308.Nmar_1773; -. DR EnsemblBacteria; ABX13669; ABX13669; Nmar_1773. DR KEGG; nmr:Nmar_1773; -. DR eggNOG; arCOG01568; Archaea. DR eggNOG; COG0668; LUCA. DR HOGENOM; HOG000110420; -. DR OMA; IDIWREE; -. DR BioCyc; NMAR436308:GI3J-1820-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro. DR InterPro; IPR010920; LSM_dom. DR InterPro; IPR011066; MscC_channel_C. DR InterPro; IPR006685; MscS_channel. DR Pfam; PF00924; MS_channel; 1. DR SUPFAM; SSF50182; SSF50182; 1. DR SUPFAM; SSF82689; SSF82689; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 38 62 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 82 103 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 266 284 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 290 308 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 506 533 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 547 AA; 62779 MW; 56EEB5D398AD9EF7 CRC64; MILGIIGIVI GYRKFSSWIG SKKIYYQRPH FSRFLRRAVL PVFAIALITA INIHVQTGVL LGEDFSLGVD EGVSPQEIFA KILNTFNILV IGYTISHLVP IALTKYDKSG LEKEDFDAWF EMRGFIDDKD GLFHKLYKWL PPKMTPEDLT DEEFNEMLKS KEGMKKLEEF RTAKGNPIGG YEKLVDNPFE EWKKSERGKY QKYYQNCVTG NNQSGRKLRP GAKPDEIFPI DIWREEKRTH GYEPIIPSNR PPGYAKKKRE GIPRSAKQIL PIGIFIATIL GVVAWWGVDL IVLATATGGL AIGLGLALQE TMQNYFAYIL IRKDKIFVEG ERVQLDTGYN GYVHKITPRV TYVRDALNES IAIIPTRQLV NAQIVNYTQG VKMVPAIVDV GVSYLNDPKQ VSAILVKVGK RAMKEVVDAK GRHLIRQRRC PYLDINKPSC GCDKDIHIDI NQPVIRFNQF NDSSLDFSLW VYVRDYGAQF KTKTDMRIIM YEEFKRYDIR IPWPIRTVYQ GDEKREQEEI DRLKEQRKKV IDEYGTGDIG RGSGEDE // ID A9A5Z4_NITMS Unreviewed; 289 AA. AC A9A5Z4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE SubName: Full=ROK family protein {ECO:0000313|EMBL:ABX13472.1}; GN OrderedLocusNames=Nmar_1576 {ECO:0000313|EMBL:ABX13472.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13472.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13472.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13472.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13472.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z4; -. DR STRING; 436308.Nmar_1576; -. DR EnsemblBacteria; ABX13472; ABX13472; Nmar_1576. DR KEGG; nmr:Nmar_1576; -. DR eggNOG; arCOG04280; Archaea. DR eggNOG; COG1940; LUCA. DR HOGENOM; HOG000150087; -. DR KO; K00847; -. DR OMA; CMEQYAS; -. DR BioCyc; NMAR436308:GI3J-1620-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000600; ROK. DR Pfam; PF00480; ROK; 1. DR PROSITE; PS01125; ROK; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 289 AA; 31174 MW; 3FBBFAE45F29CF25 CRC64; MLYKLGVDLG GTKTEAILLD DSLNVLERKR VPTPKNNYSE ILDTISNLVL ELSSNTLDYS LGICTPGAIS KKTGLIKNSN TQCLIGKSLK EDLEKKLKKT IVMENDANCF VMAESKMGAA KNFDLVFGVI MGTGVGGGIT VNGKLHSGRT NIAGEWGHHT LHRNGNPCYC GKTGCVETYI SGPALEQKWE LLSGESKSVP EILSNLDNDI GKTWKSEFLE NFGYSLANVI DILDPDAIVL GGGLSNIDFL YTEGKKSVYE KVFSDLVDTP ILKNELGDSA GVYGAALLN // ID A9A1A8_NITMS Unreviewed; 147 AA. AC A9A1A8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=SUF system FeS assembly protein, NifU family {ECO:0000313|EMBL:ABX12394.1}; GN OrderedLocusNames=Nmar_0498 {ECO:0000313|EMBL:ABX12394.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12394.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12394.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12394.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12394.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1A8; -. DR STRING; 436308.Nmar_0498; -. DR EnsemblBacteria; ABX12394; ABX12394; Nmar_0498. DR KEGG; nmr:Nmar_0498; -. DR eggNOG; arCOG02077; Archaea. DR eggNOG; COG0822; LUCA. DR HOGENOM; HOG000069226; -. DR KO; K04488; -. DR OMA; HVGENPM; -. DR BioCyc; NMAR436308:GI3J-518-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005506; F:iron ion binding; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR GO; GO:0016226; P:iron-sulfur cluster assembly; IEA:InterPro. DR InterPro; IPR002871; NIF_FeS_clus_asmbl_NifU_N. DR Pfam; PF01592; NifU_N; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 129 NifU_N. {ECO:0000259|Pfam:PF01592}. SQ SEQUENCE 147 AA; 16424 MW; 40896F453E659CBF CRC64; MSSNADIYHE MIVDYSRNPV NYGEIEDHDV TFHDANPLCG DSIDIDMKID DDKVTDIKFH GKGCAICMAC SSVLTEITKG KSLEDVKNIE KNDVLSELGL EHLQAVRIKC ALLSLKVLKS ALYTYLAKHL ESSEDVDKLK EEAANLY // ID A9A1N3_NITMS Unreviewed; 927 AA. AC A9A1N3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Copper resistance D domain protein {ECO:0000313|EMBL:ABX13548.1}; GN OrderedLocusNames=Nmar_1652 {ECO:0000313|EMBL:ABX13548.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13548.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13548.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13548.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13548.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1N3; -. DR STRING; 436308.Nmar_1652; -. DR EnsemblBacteria; ABX13548; ABX13548; Nmar_1652. DR KEGG; nmr:Nmar_1652; -. DR eggNOG; arCOG03564; Archaea. DR eggNOG; arCOG06267; Archaea. DR eggNOG; COG4257; LUCA. DR HOGENOM; HOG000110064; -. DR KO; K14166; -. DR OMA; NVWFVEQ; -. DR BioCyc; NMAR436308:GI3J-1697-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0042597; C:periplasmic space; IEA:InterPro. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0046688; P:response to copper ion; IEA:InterPro. DR Gene3D; 2.120.10.30; -; 2. DR Gene3D; 2.60.40.1220; -; 1. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. DR InterPro; IPR007348; CopC_dom. DR InterPro; IPR008457; Cu-R_CopD. DR InterPro; IPR014755; Cu-Rt/internalin_Ig-like. DR InterPro; IPR014756; Ig_E-set. DR Pfam; PF04234; CopC; 1. DR Pfam; PF05425; CopD; 1. DR SUPFAM; SSF81296; SSF81296; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 148 167 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 188 208 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 228 247 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 259 279 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 291 313 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 334 355 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 367 389 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 420 438 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 895 912 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 22 117 CopC. {ECO:0000259|Pfam:PF04234}. FT DOMAIN 331 432 CopD. {ECO:0000259|Pfam:PF05425}. SQ SEQUENCE 927 AA; 103333 MW; C22D5EC0FEC6571A CRC64; MQKFLIVLLM MSFISIPLAS AHPFTEETIP SLTSSAPAGT TEVIVYFSEP IDINFSELRV FDTNGNQIDN KDTAYYEGEL SLIITTSPLE DGVYTVSTKV LSKVDGHLVP DAFLFAVGDV VIDPSLLDVE RPSEIIFLPE AGARFPGLIG QTIVLGAVIA SLIIWGTQNK QLIREELDKI GNFHQGKFMS ITGIGLVLIF ISNILMIAVQ SIRLGVSPLD AIQTDFGITW ILRMSITIII LGIWFRLDRS KSLSKKNQIL LLGAMLALIS TSSLIGHGAA SENIPALILD YIHNLVSGVW IGGIIYFVFI LLPTFSQLKE TQREKMSLLM IPRFSITFII AVGVIIITGP TLMWFLESDI RLITESIYGQ LIILKISIAA VIIAFGGFFQ FKLQKKAEKN LESGKISVHK KLKKSLKVDV VLGIVLLGVV ALITNATLPA GEIQKIDAQE IIYGFETLEF TENAKFDIDI SPFSSGSNTI LVKVSDFEGN PLYDSNQLKV KVSNPSKNIS PIEVPMEIIK QDKNRPIEFK GEMTFGFSGE WLMEVEAQRT ENANESKLLN LLVKPRLTDI QTQVIEYELP KDSKPLFPLY DGRDTLWVSD ASAPRLWEFS LETQEFTSYS FDGLTTTFLT QDKDGKIWFT DTPRNQIGFI DPQTKEIITK TIPKLDPVIS DNTPLFIKAD FDGNIWITIV NKDRIVKYIP ENDEFEEIVL PGKENLPFAL DIDVDGKMWY TTTGAGNIGY IDPKDNQITQ FSNDPPLQGP EALLFDEDGN IWIAEHTGLA ITKFNPVLET FERITVPNDE ALPFGMTFDR YGNVWFAQHT IDSIGAYDPD NNNLIEVPVP SETSFVQFMT SDGDSNVWFV EQQTSKIGTI KMTEIPVTAS QIQSSGEFEL KYTELASPLI ALGIIATSLF YVKSIQDKRR LNELINS // ID A9A4C7_NITMS Unreviewed; 102 AA. AC A9A4C7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12616.1}; GN OrderedLocusNames=Nmar_0720 {ECO:0000313|EMBL:ABX12616.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12616.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12616.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12616.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12616.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0720; -. DR EnsemblBacteria; ABX12616; ABX12616; Nmar_0720. DR KEGG; nmr:Nmar_0720; -. DR eggNOG; arCOG08789; Archaea. DR eggNOG; ENOG411100N; LUCA. DR OMA; DEEWANM; -. DR BioCyc; NMAR436308:GI3J-746-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 102 AA; 11818 MW; 2407BDE59CE8F0F4 CRC64; MVKNGKTNAK NLFDPDELVL TKTEILGFCD RVIKKWNQNP SKNAKNILAM NAVKTSVLWT DDESLKAIWS EIIAWTFELL YENAMAQDEE WANMLKKLKN KK // ID A9A1J1_NITMS Unreviewed; 145 AA. AC A9A1J1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=UspA domain protein {ECO:0000313|EMBL:ABX13170.1}; GN OrderedLocusNames=Nmar_1274 {ECO:0000313|EMBL:ABX13170.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13170.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13170.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13170.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13170.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1J1; -. DR STRING; 436308.Nmar_1274; -. DR EnsemblBacteria; ABX13170; ABX13170; Nmar_1274. DR KEGG; nmr:Nmar_1274; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR HOGENOM; HOG000238897; -. DR OMA; FSLEVIH; -. DR BioCyc; NMAR436308:GI3J-1307-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006015; Universal_stress_UspA. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. DR PIRSF; PIRSF006276; UspA; 1. DR PRINTS; PR01438; UNVRSLSTRESS. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 142 Usp. {ECO:0000259|Pfam:PF00582}. SQ SEQUENCE 145 AA; 15564 MW; C0A6B779CE0BA9CC CRC64; MEKILIPFDG SGYSQKAFDK ALEIAEKFAS KLIVTTVLQS KVSESAGISL ERMQEIQDEE TDTATAMLKE LESQANAKNV PFSLEVIHNP SPSDGIVSFA EKNNVDLIVI GSHGRTGFRK LVLGSVANGV VAQAKCPVLI TKGTE // ID A9A208_NITMS Unreviewed; 187 AA. AC A9A208; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12421.1}; GN OrderedLocusNames=Nmar_0525 {ECO:0000313|EMBL:ABX12421.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12421.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12421.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12421.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12421.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0525; -. DR EnsemblBacteria; ABX12421; ABX12421; Nmar_0525. DR KEGG; nmr:Nmar_0525; -. DR eggNOG; arCOG02579; Archaea. DR eggNOG; COG0727; LUCA. DR KO; K06940; -. DR OMA; CCIEREY; -. DR BioCyc; NMAR436308:GI3J-546-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR005358; Puta_zinc/iron-chelating_dom. DR Pfam; PF03692; CxxCxxCC; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 187 AA; 21538 MW; 5CCA82E7E39708C9 CRC64; MEFRCVDECS QCCIEREYYP SKKFGKIGVL ILPDEKERIE KLAKENNLDI KILPRIGVSE SRDSGPSKIL AYQMMGVEKN GNTCPFLDTE SGNKSPHNGF PCKIYKNRPL ACKTYPLIES DPITLDEKCK FCKEHKTADE NLNSETESLL KIKEQMNTEL PFIWRFATEI GEEQDNNLFE SGWILEE // ID A9A384_NITMS Unreviewed; 163 AA. AC A9A384; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE RecName: Full=Probable ribosome biogenesis protein Nmar_0617 {ECO:0000256|HAMAP-Rule:MF_01116}; GN OrderedLocusNames=Nmar_0617 {ECO:0000313|EMBL:ABX12513.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12513.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12513.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12513.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Probable pre-rRNA processing protein involved in CC ribosome biogenesis. {ECO:0000256|HAMAP-Rule:MF_01116}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01116}. CC -!- SIMILARITY: Belongs to the TSR3 family. {ECO:0000256|HAMAP- CC Rule:MF_01116}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12513.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0617; -. DR EnsemblBacteria; ABX12513; ABX12513; Nmar_0617. DR KEGG; nmr:Nmar_0617; -. DR eggNOG; arCOG04733; Archaea. DR eggNOG; COG2042; LUCA. DR HOGENOM; HOG000227039; -. DR KO; K09140; -. DR OMA; DCSWESA; -. DR BioCyc; NMAR436308:GI3J-641-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01116; TSR3; 1. DR InterPro; IPR022968; Rbsm_biogenesis. DR InterPro; IPR007209; RNaseL-inhib_metal-bd_dom. DR InterPro; IPR007177; TDD_dom. DR PANTHER; PTHR20426; PTHR20426; 1. DR Pfam; PF04034; DUF367; 1. DR Pfam; PF04068; RLI; 1. DR ProDom; PD016638; DUF367; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01116}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_01116}; KW rRNA processing {ECO:0000256|HAMAP-Rule:MF_01116}. FT DOMAIN 2 29 RLI. {ECO:0000259|Pfam:PF04068}. FT DOMAIN 38 159 DUF367. {ECO:0000259|Pfam:PF04034}. SQ SEQUENCE 163 AA; 18492 MW; DEC44222D4A7A5E9 CRC64; MKLQVLMFYQ DDPKKCTAAK MVKFGLAQSI KKIGTKGLVL DPFSKNTLMS KDKSLINSIV GIDCSWNLAD QAFSKKFNGI KRKLPPLLAG NPVNYAKLNK LTTVEALAAS LFILGQKEQG LELLEKFKWG HTFYELNQNL FDEYLKLENE EQIELILKDY GLL // ID A9A1Z7_NITMS Unreviewed; 332 AA. AC A9A1Z7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Aldo/keto reductase {ECO:0000313|EMBL:ABX12410.1}; GN OrderedLocusNames=Nmar_0514 {ECO:0000313|EMBL:ABX12410.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12410.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12410.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12410.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12410.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Z7; -. DR STRING; 436308.Nmar_0514; -. DR EnsemblBacteria; ABX12410; ABX12410; Nmar_0514. DR KEGG; nmr:Nmar_0514; -. DR eggNOG; arCOG01617; Archaea. DR eggNOG; COG0667; LUCA. DR HOGENOM; HOG000250268; -. DR OMA; DWWGDRS; -. DR BioCyc; NMAR436308:GI3J-535-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.20.20.100; -; 1. DR InterPro; IPR001395; Aldo/ket_red/Kv-b. DR InterPro; IPR023210; NADP_OxRdtase_dom. DR PANTHER; PTHR11732; PTHR11732; 1. DR Pfam; PF00248; Aldo_ket_red; 1. DR SUPFAM; SSF51430; SSF51430; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 15 317 Aldo_ket_red. {ECO:0000259|Pfam:PF00248}. SQ SEQUENCE 332 AA; 37565 MW; FB040C21325B25AE CRC64; MKYKKLGKSG IEVSEIGFGA WSIALDWWGK KVEEDEAKRM LKKAYDLGIN YFETADMYGK GKSERLIGEV FKGMRDEVVI STKYGYDFSD VEQIGHAELP QDYSPEYTRK AVDACLERLQ TDYLDSLGLH NPKLHHVRND ETFNTIDELM DEGKIRAAQV ALGPAIGWTQ EGLEAMDRKS VSSIQTVYNI LEQTPGNELI QKAEQQDVGI LVRVPDASGI LTGKVKADTV IPANDHRKDR KVEWRKSALE KVEQFRPIAE RNGLNITEFA IKFILSKNKI ASVLPTVVSE EEIEMFAAIS DGKYLSSSDM KEIDDLYNTW PEYELKATPQ VN // ID A9A381_NITMS Unreviewed; 203 AA. AC A9A381; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12510.1}; GN OrderedLocusNames=Nmar_0614 {ECO:0000313|EMBL:ABX12510.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12510.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12510.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12510.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12510.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0614; -. DR EnsemblBacteria; ABX12510; ABX12510; Nmar_0614. DR KEGG; nmr:Nmar_0614; -. DR eggNOG; arCOG08622; Archaea. DR eggNOG; ENOG4111YJV; LUCA. DR HOGENOM; HOG000245183; -. DR OMA; TINLVLP; -. DR BioCyc; NMAR436308:GI3J-638-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 203 AA; 22664 MW; 7AF046C174D8BA1D CRC64; MVNYPPYVNG YGLLPNLFNA IKTANVPTKF NRDFVSTMLG LKSSSYNAMI PFMKNLGFLD QGNVPTQHYR DYRDESLGKK IMAQRVKEAY GELFTANEYA HRLTKEQVAA KLRTILGVGE DDKTVIVVAA TFAELCTLGD FEGSEITKNE NGETENLPDI IRSSPVSSKI GLNYTINLNL PATTDIEVFN AIFKSLKEHI LNE // ID A9A3N1_NITMS Unreviewed; 158 AA. AC A9A3N1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13293.1}; GN OrderedLocusNames=Nmar_1397 {ECO:0000313|EMBL:ABX13293.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13293.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13293.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13293.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13293.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1397; -. DR EnsemblBacteria; ABX13293; ABX13293; Nmar_1397. DR KEGG; nmr:Nmar_1397; -. DR eggNOG; arCOG10583; Archaea. DR eggNOG; ENOG411116V; LUCA. DR BioCyc; NMAR436308:GI3J-1432-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 158 AA; 16909 MW; B125938F120ACF0B CRC64; MASKRIFVVF VLPVIFSIAF GSAVMGDILQ EPGRELNMMP SAPTVGGSHG SGVSAHSSDI EIIGLSKSYS TSEPVAIFVQ VSDSHFDCGD LYITIYSGED VITQGGFLEQ CFAEKNALIP IGDKFSEVID TAGSYKIVAQ MISKDLKNIS TSEEFTVK // ID A9A5E0_NITMS Unreviewed; 315 AA. AC A9A5E0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABX12339.1}; GN OrderedLocusNames=Nmar_0443 {ECO:0000313|EMBL:ABX12339.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12339.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12339.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12339.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12339.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5E0; -. DR STRING; 436308.Nmar_0443; -. DR EnsemblBacteria; ABX12339; ABX12339; Nmar_0443. DR KEGG; nmr:Nmar_0443; -. DR eggNOG; arCOG04548; Archaea. DR eggNOG; COG1146; LUCA. DR HOGENOM; HOG000107969; -. DR OMA; DCIFCLA; -. DR BioCyc; NMAR436308:GI3J-461-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR017896; 4Fe4S_Fe-S-bd. DR InterPro; IPR017900; 4Fe4S_Fe_S_CS. DR PROSITE; PS00198; 4FE4S_FER_1; 1. DR PROSITE; PS51379; 4FE4S_FER_2; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 247 276 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. FT DOMAIN 284 314 4Fe-4S ferredoxin-type. FT {ECO:0000259|PROSITE:PS51379}. SQ SEQUENCE 315 AA; 35303 MW; E0B14D6FD28972D8 CRC64; MSLLLKDRVW SMEAPTAKRG VYPLHGFKLG LYRLPINLED PNEIKSVHDG LKKAFEMDKY ADRVFATYRW TEQNMDDPDA KGYEEVELSV TVEIVTGEVV DIIYQIFPIE KFGDPNWVKD YRKKADHFAK MVIDTILRNT ILADKMISYF AKAEKISEVA AIQKLEDLTP LAKIVLGAKP KPVEATEEAE EEDEGDMEIP DGAKPGPIDV DYKQKMKAST AYEAAEHTIK TWGRKGTSNG IMGVWGEFVS VDYDICVADG GCIEACPVGV YEWFDTPGNP ASDKKPLMSK EPDCIFCLAC EGVCPPQAIK IFEQK // ID A9A286_NITMS Unreviewed; 69 AA. AC A9A286; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12797.1}; GN OrderedLocusNames=Nmar_0901 {ECO:0000313|EMBL:ABX12797.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12797.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12797.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12797.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12797.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12797; ABX12797; Nmar_0901. DR KEGG; nmr:Nmar_0901; -. DR BioCyc; NMAR436308:GI3J-929-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 69 AA; 8431 MW; B496F6C461D7A895 CRC64; MSEGSDLKEK ILEYIKNRSE INETTATRHI HRRFGIVEEE IDNILDELFK ENKIKKIYDK EYQENRFEI // ID A9A5Z1_NITMS Unreviewed; 507 AA. AC A9A5Z1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 60. DE RecName: Full=GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344}; DE EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344}; DE AltName: Full=GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; DE AltName: Full=Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; GN Name=guaA {ECO:0000256|HAMAP-Rule:MF_00344}; GN OrderedLocusNames=Nmar_1573 {ECO:0000313|EMBL:ABX13469.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13469.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13469.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13469.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the synthesis of GMP from XMP. CC {ECO:0000256|HAMAP-Rule:MF_00344}. CC -!- CATALYTIC ACTIVITY: ATP + XMP + L-glutamine + H(2)O = AMP + CC diphosphate + GMP + L-glutamate. {ECO:0000256|HAMAP- CC Rule:MF_00344}. CC -!- PATHWAY: Purine metabolism; GMP biosynthesis; GMP from XMP (L-Gln CC route): step 1/1. {ECO:0000256|HAMAP-Rule:MF_00344}. CC -!- SIMILARITY: Contains 1 GMPS ATP-PPase (ATP pyrophosphatase) CC domain. {ECO:0000256|HAMAP-Rule:MF_00344}. CC -!- SIMILARITY: Contains 1 glutamine amidotransferase type-1 domain. CC {ECO:0000256|HAMAP-Rule:MF_00344}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13469.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z1; -. DR STRING; 436308.Nmar_1573; -. DR MEROPS; C26.957; -. DR EnsemblBacteria; ABX13469; ABX13469; Nmar_1573. DR KEGG; nmr:Nmar_1573; -. DR eggNOG; arCOG00085; Archaea. DR eggNOG; ENOG4102UA9; Archaea. DR eggNOG; COG0518; LUCA. DR eggNOG; COG0519; LUCA. DR HOGENOM; HOG000223964; -. DR KO; K01951; -. DR OMA; MSHGDSV; -. DR BioCyc; NMAR436308:GI3J-1617-MONOMER; -. DR UniPathway; UPA00189; UER00296. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003922; F:GMP synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016462; F:pyrophosphatase activity; IEA:InterPro. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-HAMAP. DR GO; GO:0006177; P:GMP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.620; -; 1. DR Gene3D; 3.40.50.880; -; 1. DR HAMAP; MF_00344; GMP_synthase; 1. DR InterPro; IPR029062; Class_I_gatase-like. DR InterPro; IPR017926; GATASE. DR InterPro; IPR001674; GMP_synth_C. DR InterPro; IPR004739; GMP_synth_N. DR InterPro; IPR022955; GMP_synthase. DR InterPro; IPR025777; GMPS_ATP_PPase_dom. DR InterPro; IPR022310; NAD/GMP_synthase. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF00117; GATase; 1. DR Pfam; PF00958; GMP_synt_C; 1. DR Pfam; PF02540; NAD_synthase; 1. DR SUPFAM; SSF52317; SSF52317; 1. DR TIGRFAMs; TIGR00884; guaA_Cterm; 1. DR TIGRFAMs; TIGR00888; guaA_Nterm; 1. DR PROSITE; PS51273; GATASE_TYPE_1; 1. DR PROSITE; PS51553; GMPS_ATP_PPASE; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00344}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; KW GMP biosynthesis {ECO:0000256|HAMAP-Rule:MF_00344}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00344}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00344}; KW Purine biosynthesis {ECO:0000256|HAMAP-Rule:MF_00344}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 192 Glutamine amidotransferase type-1. FT {ECO:0000256|HAMAP-Rule:MF_00344, FT ECO:0000259|PROSITE:PS51273}. FT DOMAIN 193 382 GMPS ATP-PPase. {ECO:0000256|HAMAP- FT Rule:MF_00344}. FT DOMAIN 193 382 GMPS ATP-PPase (ATP pyrophosphatase). FT {ECO:0000259|PROSITE:PS51553}. FT NP_BIND 218 224 ATP. {ECO:0000256|HAMAP-Rule:MF_00344}. FT ACT_SITE 80 80 Nucleophile. {ECO:0000256|HAMAP- FT Rule:MF_00344}. FT ACT_SITE 166 166 {ECO:0000256|HAMAP-Rule:MF_00344}. FT ACT_SITE 168 168 {ECO:0000256|HAMAP-Rule:MF_00344}. SQ SEQUENCE 507 AA; 56180 MW; 9E8BA3DA8F4072E8 CRC64; MDKIVVLDFG SQYSHLICRR IREFSVYAEL VPFDISYEEL QKHNPKGIIF SGGPSSVYSS DAPVPESKIF DMNLPLLGIC YGHQLIVNKY GGKVKRANKE YGSSLLTIDN DKDLLNGVGE SVRAWMSHGD EAEEIPPGFQ VIGHTESAKA AAIASDEKSV YGIQFHPEVV HTEQGTEILK NFVLKVCGAK QDWTMEGFID SAVEKISKIE GNVLCGVSGG IDSTVAALLI HKAIGDRLKC VFVNNGLLRL NEETEIETMF KDNFNVNFTS INAVDSFLDK LKGVEDPEKK RKIVGEEFVN VFTEFAEKNG PFKWLAQGTL YPDVIESGVS KGPADVIKSH HNVGGLPDWL NLEILEPLRE LYKDEVRMIA KILEVPEKLF MRHPFPGPGL AVRIIGEVTP TKLQISKVAS KIVEDELVEA GLYGKVWQAY AAVGDDRAVG VVGDERKYGN IVMIRVVDSI DAMTADWTRL PHGLLEKMSN RITNEIEDVT WVTYTISSKP PATIEPQ // ID A9A653_NITMS Unreviewed; 252 AA. AC A9A653; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Rhomboid family protein {ECO:0000313|EMBL:ABX13531.1}; GN OrderedLocusNames=Nmar_1635 {ECO:0000313|EMBL:ABX13531.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13531.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13531.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13531.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13531.1; -; Genomic_DNA. DR ProteinModelPortal; A9A653; -. DR STRING; 436308.Nmar_1635; -. DR MEROPS; S54.027; -. DR EnsemblBacteria; ABX13531; ABX13531; Nmar_1635. DR KEGG; nmr:Nmar_1635; -. DR eggNOG; arCOG01768; Archaea. DR eggNOG; COG0705; LUCA. DR HOGENOM; HOG000229238; -. DR OMA; HIQARWF; -. DR BioCyc; NMAR436308:GI3J-1680-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro. DR Gene3D; 1.20.1540.10; -; 1. DR InterPro; IPR002610; Peptidase_S54_rhomboid. DR InterPro; IPR022764; Peptidase_S54_rhomboid_dom. DR PANTHER; PTHR22936; PTHR22936; 2. DR Pfam; PF01694; Rhomboid; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 20 41 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 48 69 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 81 107 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 119 137 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 143 166 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 187 207 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 213 232 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 81 234 Rhomboid. {ECO:0000259|Pfam:PF01694}. SQ SEQUENCE 252 AA; 28047 MW; 7674EB97FD6F1839 CRC64; MLPLRDENPH PPGFKPKITI GLIILNVVIF FYEVAVTGQF WEFSNQSAAF MFFEWGAVPS CITGFSSMIQ PGISCPDTPY FSLFSSMFMH GGLMHLGGNM LFLWIFGDNI ELKFGKAKFL LIYLAWGVGA GFAHIVIDPT SSIPAVGASG AISGVLGAYL AMFPRVRITT FLMLGFFWRM MHIQARWFLP FWLVFQNLLP FFIGGFGVAG GGVAYMAHIG GFAIGFATGY LYKKTHSSEY TYGTRYGYRP DY // ID A9A3K7_NITMS Unreviewed; 588 AA. AC A9A3K7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 49. DE SubName: Full=Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX12939.1}; GN OrderedLocusNames=Nmar_1043 {ECO:0000313|EMBL:ABX12939.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12939.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12939.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12939.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12939.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3K7; -. DR STRING; 436308.Nmar_1043; -. DR EnsemblBacteria; ABX12939; ABX12939; Nmar_1043. DR KEGG; nmr:Nmar_1043; -. DR eggNOG; arCOG01259; Archaea. DR eggNOG; COG1028; LUCA. DR HOGENOM; HOG000108158; -. DR OMA; EQRPYRF; -. DR BioCyc; NMAR436308:GI3J-1074-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 3. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR002347; SDR_fam. DR PANTHER; PTHR24322; PTHR24322; 3. DR Pfam; PF00106; adh_short; 1. DR PRINTS; PR00081; GDHRDH. DR SUPFAM; SSF51735; SSF51735; 3. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 588 AA; 63906 MW; 9E8CC91B883EA052 CRC64; MLKFQDKVAL VTGSGTGIGK AIATKFVENG ASVIILGRRK EPLQEAATEL EGKIPQGVNA TVKIFAGVDV ADETAMNEMF DTLKNEGTNV DYIINNAGVS GPVTCFANSP LDEFKSTIAI HLTGTFWGSV QALKVMKEGG KIITISTFFT EEKPLEQRPY RFRSPYTASQ GAKNRLAECM SWELTDKGII SIATNPGPVH SDRIYKTVYP KAAAEFMRVS GFEDLTPVQV EEAKDDLLEC IEADGINKEG IAKTAEKLAN GRDVAKLTET FTNLLTKIKT IAEKVQNNTS HMIANREFLS QAQVSETVLN LCDDEIAKII NGKVIPGDRV FYAVKPHIGT TAPGVHQPDF TGKAVVFTID GTDKTDAERV EFLASHVEKN GGKVACFISQ STPQEIQDSI SGKFHSHVVD IKNPEEVERW LNTAKTNIGE ILAVVHVTGK LPEVGNLTEL TRAGWEELVA KFISTPATVA QKALEQFVPG GGKDPRLYKD KTGSIMIIGP DLPVGKKVSG TQRAQVEVFR GALRPFTTTV NQELSDVLKS KIRMFTVFPG SVTGIEPDNQ KIADAFNFLV SENSASSSEV TFCVDESR // ID A9A1Q3_NITMS Unreviewed; 351 AA. AC A9A1Q3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 54. DE SubName: Full=Glucose-1-phosphate thymidyltransferase {ECO:0000313|EMBL:ABX12024.1}; GN OrderedLocusNames=Nmar_0124 {ECO:0000313|EMBL:ABX12024.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12024.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12024.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12024.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12024.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Q3; -. DR STRING; 436308.Nmar_0124; -. DR EnsemblBacteria; ABX12024; ABX12024; Nmar_0124. DR KEGG; nmr:Nmar_0124; -. DR eggNOG; arCOG00667; Archaea. DR eggNOG; COG1209; LUCA. DR HOGENOM; HOG000283475; -. DR KO; K00973; -. DR OMA; NCEIENS; -. DR BioCyc; NMAR436308:GI3J-127-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 2. DR InterPro; IPR005908; G1P_thy_trans_l. DR InterPro; IPR001451; Hexapep. DR InterPro; IPR005835; NTP_transferase_dom. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00132; Hexapep; 1. DR Pfam; PF00483; NTP_transferase; 1. DR SUPFAM; SSF53448; SSF53448; 2. DR TIGRFAMs; TIGR01208; rmlA_long; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12024.1}. FT DOMAIN 2 236 NTP_transferase. FT {ECO:0000259|Pfam:PF00483}. SQ SEQUENCE 351 AA; 39219 MW; F65440C419BEFDE5 CRC64; MKGIILHGGH GTRLRPLTHT GPKQLLPIAN KPMSQYCIES MKNAGITEIA IIIGGIASKK VEEYYGNGEK FGVKITYISQ EAPKGIAHAI NLCKDFVKDD KFLVFLGDNI LKKEILEYKT NYENSDADAL LLLCEVDNPT QFGIADVKDN KIIKIMEKPK DPPTNLAVTG IYFLNKKIFE IIDILKPSWR NELEITDALQ LLMEKGNKII FDTVTDYWKD TGTPNDILHA NKEILQDISQ EFLGEKEQTQ IDGVCVLKEK SLLKNVKIIG PVLIGKNCII NNNSVIGPNV SIGDNCKISK SKIENSIIMN NCEINSNIKI SDSIIAFDCQ IFQEKNEKNV LLLGEGTKIW I // ID A9A3E2_NITMS Unreviewed; 280 AA. AC A9A3E2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX12874.1}; GN OrderedLocusNames=Nmar_0978 {ECO:0000313|EMBL:ABX12874.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12874.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12874.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12874.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12874.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3E2; -. DR STRING; 436308.Nmar_0978; -. DR EnsemblBacteria; ABX12874; ABX12874; Nmar_0978. DR KEGG; nmr:Nmar_0978; -. DR eggNOG; arCOG03402; Archaea. DR eggNOG; COG5012; LUCA. DR OMA; THTLAIR; -. DR BioCyc; NMAR436308:GI3J-1006-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0031419; F:cobalamin binding; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR Gene3D; 3.40.50.280; -; 1. DR InterPro; IPR003759; Cbl-bd_cap. DR InterPro; IPR006158; Cobalamin-bd. DR Pfam; PF02310; B12-binding; 1. DR Pfam; PF02607; B12-binding_2; 1. DR SUPFAM; SSF52242; SSF52242; 1. DR PROSITE; PS51332; B12_BINDING; 1. DR PROSITE; PS51337; B12_BINDING_NTER; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 67 164 B12-binding N-terminal. FT {ECO:0000259|PROSITE:PS51337}. FT DOMAIN 162 280 B12-binding. FT {ECO:0000259|PROSITE:PS51332}. SQ SEQUENCE 280 AA; 31575 MW; B2D35C2A95575AF5 CRC64; MVYIRAKKVK SDQYLYLVKS VWDSKKSTSK QEIVKYLGKA SEVVKDDIPI DYRNDPKVLS VLASYNPKDI KKREDATKKS KQQLYKKLTE GSIQDCVKIY EEYIKIFNAS DFFDRILKPT MYRIGDEWSI GKISIATEHV ASNVAQTLVK IIMDQVSSGG NKKKILICVP LGEEHHLGCD VLETYLSIKG FKIFNMGTSM PTESILSFID NNKPDVVLVS ITLEDNLAAG QRLVKKISDH TNIPILVGGY ALQAKKIPKF TGQIIPDCGL EEVPKILRKI // ID A9A4Y0_NITMS Unreviewed; 70 AA. AC A9A4Y0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13434.1}; GN OrderedLocusNames=Nmar_1538 {ECO:0000313|EMBL:ABX13434.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13434.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13434.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13434.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13434.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1538; -. DR EnsemblBacteria; ABX13434; ABX13434; Nmar_1538. DR KEGG; nmr:Nmar_1538; -. DR eggNOG; arCOG08782; Archaea. DR eggNOG; ENOG41111J3; LUCA. DR HOGENOM; HOG000109572; -. DR OMA; NQINWIW; -. DR BioCyc; NMAR436308:GI3J-1580-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 70 AA; 7942 MW; 5D771FF5E38E41F2 CRC64; MGRSFQEWLG QQDQAVVAKT RAGDEANKPL LNQINWIWVN NLMNQKADLN PSSAELLDWV TSGQIDAMRK // ID A9A504_NITMS Unreviewed; 306 AA. AC A9A504; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Transcription factor TFIIB cyclin-related {ECO:0000313|EMBL:ABX11913.1}; GN OrderedLocusNames=Nmar_0013 {ECO:0000313|EMBL:ABX11913.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11913.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11913.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11913.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11913.1; -; Genomic_DNA. DR ProteinModelPortal; A9A504; -. DR STRING; 436308.Nmar_0013; -. DR EnsemblBacteria; ABX11913; ABX11913; Nmar_0013. DR KEGG; nmr:Nmar_0013; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; ENNIPRT; -. DR BioCyc; NMAR436308:GI3J-13-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.472.10; -; 2. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR023486; TFIIB_CS. DR InterPro; IPR013150; TFIIB_cyclin. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SMART; SM00385; CYCLIN; 2. DR SUPFAM; SSF47954; SSF47954; 2. DR PROSITE; PS00782; TFIIB; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 125 213 CYCLIN. {ECO:0000259|SMART:SM00385}. FT DOMAIN 219 300 CYCLIN. {ECO:0000259|SMART:SM00385}. SQ SEQUENCE 306 AA; 33901 MW; C686AD444FFDC4C5 CRC64; MVENYSNDYD VKCKLDACKT YPAITDSERG EIVCGGCGLI LVQNLADASY ENNGYTQEDF MKQARTGPAT SLTMFDKGLS TVIGSNKDSS GNALPSKTKY EFNRLRTWDQ RSKSRKTATL SKAFTLLHSM KTKLSVPDNV VENAAYIYRK IVSAKLTRGR TMASLISASL YAACRENNIP RTLDDIAKAG NVERRILSRD LRTIIKKLGL NLNQYDTASF ISKISNNMNL KETTKRGAFD ILKRCEEEGI TAGKHPVAQA AASLYISCVL NGERVSQKRV SVEAGVSDVT IRNRTVLIKK ILKLDE // ID A9A5M8_NITMS Unreviewed; 222 AA. AC A9A5M8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Nucleotidyl transferase {ECO:0000313|EMBL:ABX12739.1}; GN OrderedLocusNames=Nmar_0843 {ECO:0000313|EMBL:ABX12739.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12739.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12739.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12739.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12739.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5M8; -. DR STRING; 436308.Nmar_0843; -. DR EnsemblBacteria; ABX12739; ABX12739; Nmar_0843. DR KEGG; nmr:Nmar_0843; -. DR eggNOG; arCOG00663; Archaea. DR eggNOG; COG1208; LUCA. DR HOGENOM; HOG000283478; -. DR OMA; IFDDYFI; -. DR BioCyc; NMAR436308:GI3J-870-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.90.550.10; -; 1. DR InterPro; IPR005835; NTP_transferase_dom. DR InterPro; IPR029044; Nucleotide-diphossugar_trans. DR Pfam; PF00483; NTP_transferase; 1. DR SUPFAM; SSF53448; SSF53448; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12739.1}. FT DOMAIN 2 218 NTP_transferase. FT {ECO:0000259|Pfam:PF00483}. SQ SEQUENCE 222 AA; 25424 MW; ACAA9B2B0568A93F CRC64; MKAIILAGGR GKRLKPVTDY VPKPLVPIKN IPIIEWQIRY LKKFGIKEVI ICTGYKTEMI ENHLNMKDIG IKIKFSIEKT PLGTGGAIKK AGKMINEKSF FVLNGDTITN IDLKKLQKKK NAIAAIELRT KYGILETDDD KILNFREKKE ISDTWMNAGI YHLEKTVLKE LPDKGDIEKT VFPKYAKKGT LNTVKFKNTK WYSVDSFKDM EECALEIEKI IK // ID A9A2M1_NITMS Unreviewed; 84 AA. AC A9A2M1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13260.1}; GN OrderedLocusNames=Nmar_1364 {ECO:0000313|EMBL:ABX13260.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13260.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13260.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13260.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13260.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13260; ABX13260; Nmar_1364. DR KEGG; nmr:Nmar_1364; -. DR eggNOG; arCOG11049; Archaea. DR eggNOG; ENOG41111R2; LUCA. DR BioCyc; NMAR436308:GI3J-1398-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 84 AA; 10427 MW; 7D00F07D4CD0AF3F CRC64; MKVFFTRHFD DPTCDKFTEF HVDTHRTWWC CKQLKEHDKH FQLWNVKWAK FHFKDTSVDG NIAFFSMNYC PYCGEKIEYE EFTK // ID A9A4H4_NITMS Unreviewed; 196 AA. AC A9A4H4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 40. DE SubName: Full=Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:ABX12952.1}; GN OrderedLocusNames=Nmar_1056 {ECO:0000313|EMBL:ABX12952.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12952.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12952.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12952.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12952.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4H4; -. DR STRING; 436308.Nmar_1056; -. DR EnsemblBacteria; ABX12952; ABX12952; Nmar_1056. DR KEGG; nmr:Nmar_1056; -. DR eggNOG; arCOG00905; Archaea. DR eggNOG; COG1573; LUCA. DR HOGENOM; HOG000196501; -. DR KO; K02334; -. DR OMA; VLICVHP; -. DR BioCyc; NMAR436308:GI3J-1087-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.470.10; -; 1. DR InterPro; IPR005273; Ura-DNA_glyco_family4_dom. DR InterPro; IPR005122; Uracil-DNA_glycosylase-like. DR Pfam; PF03167; UDG; 1. DR SMART; SM00986; UDG; 1. DR SUPFAM; SSF52141; SSF52141; 1. DR TIGRFAMs; TIGR00758; UDG_fam4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 28 173 UDG. {ECO:0000259|SMART:SM00986}. SQ SEQUENCE 196 AA; 21868 MW; CCC5E726CE13ED03 CRC64; MNQLETIKQN VIKCTKCDLY KTRTNSVPGK GNFQSDVIFV GEAPGRNEDK NGEPFVGAAG KKLSAALEGA GVSREDVYIT NVVKCRPPNN RVPNTNERDT CKEYLKNEIL IIKPKIICVL GNTAFNSVLG GSEITKFRGK LVRKDNQLYF LTIHPAATIY NQELISTLNE DIKKLFNLIT ELKNNKIVSI DIEYTS // ID A9A3N7_NITMS Unreviewed; 132 AA. AC A9A3N7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13299.1}; GN OrderedLocusNames=Nmar_1403 {ECO:0000313|EMBL:ABX13299.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13299.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13299.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13299.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13299.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1403; -. DR EnsemblBacteria; ABX13299; ABX13299; Nmar_1403. DR KEGG; nmr:Nmar_1403; -. DR eggNOG; arCOG08703; Archaea. DR eggNOG; ENOG41111BV; LUCA. DR HOGENOM; HOG000107075; -. DR OMA; RFCEEKQ; -. DR BioCyc; NMAR436308:GI3J-1438-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 132 AA; 15266 MW; 9F12E102A1BAEF64 CRC64; MTIDTETCKH QPVYFGVVNI NIDERTIGSV DVWRCGVCKK RFCEEKQLGI EELADLVGMP KIDPDAKWAV TVCKLQQGKY KWKLVKLKEN GEIKHECLDE KIVPLTVKDY QVEDDKHWSF LIDDNVNKAV EI // ID A9A2A5_NITMS Unreviewed; 505 AA. AC A9A2A5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Histidine kinase {ECO:0000313|EMBL:ABX12816.1}; GN OrderedLocusNames=Nmar_0920 {ECO:0000313|EMBL:ABX12816.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12816.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12816.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12816.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12816.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2A5; -. DR STRING; 436308.Nmar_0920; -. DR EnsemblBacteria; ABX12816; ABX12816; Nmar_0920. DR KEGG; nmr:Nmar_0920; -. DR eggNOG; ENOG4102TTM; Archaea. DR eggNOG; ENOG410XNMH; LUCA. DR OMA; CKGIVES; -. DR BioCyc; NMAR436308:GI3J-948-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro. DR Gene3D; 1.10.287.130; -; 1. DR Gene3D; 3.30.565.10; -; 1. DR InterPro; IPR021424; DUF3068. DR InterPro; IPR003594; HATPase_C. DR InterPro; IPR005467; His_kinase_dom. DR InterPro; IPR003661; HisK_dim/P. DR InterPro; IPR004358; Sig_transdc_His_kin-like_C. DR Pfam; PF11271; DUF3068; 1. DR Pfam; PF02518; HATPase_c; 1. DR Pfam; PF00512; HisKA; 1. DR PRINTS; PR00344; BCTRLSENSOR. DR SMART; SM00387; HATPase_c; 1. DR SMART; SM00388; HisKA; 1. DR SUPFAM; SSF47384; SSF47384; 1. DR SUPFAM; SSF55874; SSF55874; 1. DR PROSITE; PS50109; HIS_KIN; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000313|EMBL:ABX12816.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12816.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 24 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 243 263 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 288 505 Histidine kinase. FT {ECO:0000259|PROSITE:PS50109}. SQ SEQUENCE 505 AA; 56916 MW; 2ED6E21D25CD467F CRC64; MQKLPFIVLG IGISFLLIWV FGITPELLTS HDILEITAEN VGMIQFADCV GCELSEPTKM LFHWDREILE VNGNALLLRT TYDYKDILTA ESFWVTDFTE AVDKNTREYL DKTGHFAFPP HVEKKDYFVY DIGGVVMHYH FVEETTLDGV TVYKFEGEEI FDVSDVYPDF SEQIWEHYRA TNHIEPVTGM DVSFSEQFTD YALVDDQKIV VLDAWDEPTE FSEKTLLKQV KNLKSLYFMY ENIIPSIIGL ATLAGFIVTM LAGRVSKGET KIAELEEIDK QKDELVSMVS HEIKNPLTPI ILACQLLLTE KEGPLTQKQK HRIKQILVNS NQVTALLSDL SDIKTLDRND MNLRKEDVNV DILLKKIIPN LKDMVESRGA VLELKVKKSK TISCDAARIS QVVTNIVKNA VDFVPTTNGK IVISSDVTDD GQTLISIEDN GIGIPEEHHE TVFEKFHQLD TPKDISHQGT GLGLAICKGI VESHGGKIWV AKDYTGGAKF NILLP // ID A9A552_NITMS Unreviewed; 216 AA. AC A9A552; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11961.1}; GN OrderedLocusNames=Nmar_0061 {ECO:0000313|EMBL:ABX11961.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11961.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11961.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11961.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11961.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0061; -. DR EnsemblBacteria; ABX11961; ABX11961; Nmar_0061. DR KEGG; nmr:Nmar_0061; -. DR eggNOG; arCOG00452; Archaea. DR eggNOG; COG5491; LUCA. DR HOGENOM; HOG000110498; -. DR OMA; YGGAVNE; -. DR BioCyc; NMAR436308:GI3J-61-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 216 AA; 23642 MW; 022BF60477B99030 CRC64; MPNFDKTWAR QETQSVTGKL REAVKPQGAL KPRIQTAVNK LQVQISKMDS MLGKLHERDA QLFQRVVTAM QQHDTSTSRV LSNELAEIRK VTKMLGNARM SLEQVQLRLT TIHDLGDAMV AIGPAMSTMK GLKSSLGRFM PEADSELNTM TQTLNGLMMD SLAGDSFNME SDVSSEETEK ILQEASAVAE QQIGDKFPSV PSSTGLSSGT STSTFE // ID A9A1F8_NITMS Unreviewed; 317 AA. AC A9A1F8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13137.1}; GN OrderedLocusNames=Nmar_1241 {ECO:0000313|EMBL:ABX13137.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13137.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13137.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13137.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13137.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1241; -. DR EnsemblBacteria; ABX13137; ABX13137; Nmar_1241. DR KEGG; nmr:Nmar_1241; -. DR eggNOG; arCOG08647; Archaea. DR eggNOG; ENOG410Z3CW; LUCA. DR BioCyc; NMAR436308:GI3J-1274-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 317 AA; 35658 MW; 1A612820A5DE2612 CRC64; MQRNSKKPMK LFQVLIIFTV FLVAIQPALA DIESPKKQMK LGVLPEKITC NEGLVLMLKT SGMPACVKSA TAEKLEERGW KQIIQKFEKA EKEIETIPAS QSTTVNFYIS DDDLNTSHSG VDVVNIEDLF EFTINGVPIQ GPETMIETGT DTGKFYLKLD LPDTVKQDDV VLIRYLDQSD YSGEKRVLTK SIALTKTFAK VETSGENSRI GHEFTLRIYE PDANRDSKDE DKISLSSFEY RGDGGIRTTL ANPKFDANSW ALIETGPNTS TFEVKIKIPR ELDGKTIHIG DKYEIRYIDR STPSETEEKI IFKGRIG // ID A9A4B1_NITMS Unreviewed; 266 AA. AC A9A4B1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12600.1}; GN OrderedLocusNames=Nmar_0704 {ECO:0000313|EMBL:ABX12600.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12600.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12600.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12600.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12600.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0704; -. DR EnsemblBacteria; ABX12600; ABX12600; Nmar_0704. DR KEGG; nmr:Nmar_0704; -. DR BioCyc; NMAR436308:GI3J-729-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 266 AA; 29693 MW; 5863816C35E3ED7E CRC64; MSNLKKQDTI GIIAAIAITI VSVGFAIAGT APTDMPQKQA QNIEVIGFGG ITDAKESIKI LLESKSIDLD TSNGFIRGNV VYEGFQPQMG LVYLEIFSPT GDKVNKSELQ LRDRGNDVYE AEFTQYFDKS DFLNNNEKTG QYMMRISTEY GMLAKQTPFD VIMSSQEQPK INTVVMESNE EIGLGGILHE KKIRTGYDIG VMEKDLENTI LKKYLTKVLK GYHNGDISKD DVEKLAEFKS IDCNFTDQTS QNKDVLQLSC EIIPEN // ID A9A1Y6_NITMS Unreviewed; 317 AA. AC A9A1Y6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12399.1}; GN OrderedLocusNames=Nmar_0503 {ECO:0000313|EMBL:ABX12399.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12399.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12399.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12399.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12399.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0503; -. DR EnsemblBacteria; ABX12399; ABX12399; Nmar_0503. DR KEGG; nmr:Nmar_0503; -. DR eggNOG; arCOG00379; Archaea. DR eggNOG; ENOG411251F; LUCA. DR OMA; LRETMIS; -. DR BioCyc; NMAR436308:GI3J-523-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000786; C:nucleosome; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006334; P:nucleosome assembly; IEA:InterPro. DR InterPro; IPR005819; Histone_H5. DR PRINTS; PR00624; HISTONEH5. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 5 42 {ECO:0000256|SAM:Coils}. FT COILED 68 102 {ECO:0000256|SAM:Coils}. FT COILED 112 146 {ECO:0000256|SAM:Coils}. FT COILED 186 223 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 317 AA; 36109 MW; B380DA9AF13DD5EA CRC64; MFESLASLEK TVLQLRKKQQ EATKLRKRAE KQLKEVLSAQ RRSTSGLNSI DRKIESERED VSDVSGVLNQ KNSQLASIER LVQAAEERLS REKEAIEQTE QEIEFSENPE EKQYAESRLR SLRDHVEELT NEIKSRQKTA KKIAEDVTKF DSIKSKISTK IQKQSQSKPS LRETMISSKK AAEKFVKEVE RRTKSEESAK KTLEKASSKL KELLAKRKTA TKKKATKKKA AKKKPARKTA TKKKATKKKA AKKKPARKTA TKKKATKKKA AKKKPARKTA TKKKATKKKA AKKKPARKTA TKKKTTKKKA AKKKTRR // ID A9A1B1_NITMS Unreviewed; 278 AA. AC A9A1B1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Adenylate/guanylate cyclase {ECO:0000313|EMBL:ABX12746.1}; GN OrderedLocusNames=Nmar_0850 {ECO:0000313|EMBL:ABX12746.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12746.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12746.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12746.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12746.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1B1; -. DR STRING; 436308.Nmar_0850; -. DR EnsemblBacteria; ABX12746; ABX12746; Nmar_0850. DR KEGG; nmr:Nmar_0850; -. DR eggNOG; arCOG07810; Archaea. DR eggNOG; ENOG410Y51Z; LUCA. DR HOGENOM; HOG000107243; -. DR OMA; CAKSMIT; -. DR BioCyc; NMAR436308:GI3J-877-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0016849; F:phosphorus-oxygen lyase activity; IEA:InterPro. DR GO; GO:0009190; P:cyclic nucleotide biosynthetic process; IEA:InterPro. DR GO; GO:0035556; P:intracellular signal transduction; IEA:InterPro. DR Gene3D; 3.30.70.1230; -; 1. DR InterPro; IPR001054; A/G_cyclase. DR InterPro; IPR029787; Nucleotide_cyclase. DR Pfam; PF00211; Guanylate_cyc; 1. DR SMART; SM00044; CYCc; 1. DR SUPFAM; SSF55073; SSF55073; 1. DR PROSITE; PS50125; GUANYLATE_CYCLASE_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 90 224 Guanylate cyclase. FT {ECO:0000259|PROSITE:PS50125}. SQ SEQUENCE 278 AA; 31481 MW; 376D670F6C1B4696 CRC64; MFPMWTGISF RIGEKMAENS VEKESDSKQD KVVDMLLSSA SEKTLDSESM ILETQKRVWG ALKKGYQYSG VADESDIFLR KNVFSKLDLV VLYVDLVGST TMTLEMPEEK IAIIISSFAQ EMAAVIRQYE GYVLKFVGDA VIGYFDAQSN GLLASDNAVN CAKSMITVIQ KGINPILNQY DYPDLMVKIG VDFGKNIVVR YGADEQQSHV DVMGPAMNIA AKIQNMAKPN QILIGQDVYQ RLHPNFQRDF VEVIWKQDEW KYRSRVTGEI YKVYEFKG // ID A9A593_NITMS Unreviewed; 513 AA. AC A9A593; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 56. DE RecName: Full=Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; DE Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920}; GN Name=ftsY {ECO:0000256|HAMAP-Rule:MF_00920}; GN OrderedLocusNames=Nmar_0396 {ECO:0000313|EMBL:ABX12292.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12292.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12292.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12292.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in targeting and insertion of nascent membrane CC proteins into the cytoplasmic membrane. Acts as a receptor for the CC complex formed by the signal recognition particle (SRP) and the CC ribosome-nascent chain (RNC). {ECO:0000256|HAMAP-Rule:MF_00920}. CC -!- SUBUNIT: Part of the signal recognition particle protein CC translocation system, which is composed of SRP and FtsY. CC {ECO:0000256|HAMAP-Rule:MF_00920}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_00920}; Peripheral membrane protein {ECO:0000256|HAMAP- CC Rule:MF_00920}; Cytoplasmic side {ECO:0000256|HAMAP- CC Rule:MF_00920}. Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00920}. CC -!- SIMILARITY: Belongs to the GTP-binding SRP family. FtsY subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00920}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12292.1; -; Genomic_DNA. DR ProteinModelPortal; A9A593; -. DR STRING; 436308.Nmar_0396; -. DR EnsemblBacteria; ABX12292; ABX12292; Nmar_0396. DR KEGG; nmr:Nmar_0396; -. DR eggNOG; arCOG01227; Archaea. DR eggNOG; COG0552; LUCA. DR HOGENOM; HOG000105948; -. DR KO; K03110; -. DR OMA; IAHITSK; -. DR BioCyc; NMAR436308:GI3J-413-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0031226; C:intrinsic component of plasma membrane; IEA:UniProtKB-HAMAP. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00920; FtsY; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR013822; Signal_recog_particl_SRP54_hlx. DR InterPro; IPR004390; SR_rcpt_FtsY. DR InterPro; IPR000897; SRP54_GTPase_dom. DR Pfam; PF00448; SRP54; 1. DR Pfam; PF02881; SRP54_N; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00962; SRP54; 1. DR SMART; SM00963; SRP54_N; 1. DR SUPFAM; SSF47364; SSF47364; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00064; ftsY; 1. DR PROSITE; PS00300; SRP54; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00920}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00920}; KW GTP-binding {ECO:0000256|HAMAP-Rule:MF_00920}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_00920}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00920}; KW Receptor {ECO:0000256|HAMAP-Rule:MF_00920}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 273 286 SRP54. {ECO:0000259|PROSITE:PS00300}. FT NP_BIND 112 119 GTP. {ECO:0000256|HAMAP-Rule:MF_00920}. FT NP_BIND 194 198 GTP. {ECO:0000256|HAMAP-Rule:MF_00920}. FT NP_BIND 252 255 GTP. {ECO:0000256|HAMAP-Rule:MF_00920}. SQ SEQUENCE 513 AA; 56843 MW; 34DF83309C35B3AF CRC64; MFDKLRSAFS NAAKSFGEKE LNEKDIEDIL FELEISLLES DVATEVIDSI KDDLKEKLVG SKVDKKEIEK FVKDSLISSI SAHFDAAGEI DLFGKINEKK EQGQPFLILF LGINGTGKTT SLAKVAHMLQ QEKYSVVVAA ADTFRAGAIE QLREHTNRLN LKLVAQNYNS DPAAVARDAV LYAKSHKTDV VLIDTAGRMQ TSENLMQQIE KITKVVNPDL KIFVGDSLAG NDTVNQAREF HAHTNFHGSI LTKSDADARG GAALSIVKVT STPVMYVGVG QEYPDLKPFD KKTFLETVFG NLDNVDIKKE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPT PEPTPEPTPE PTPEPTPEPE PTSDDPFEGI KDDEIATYSD LFDVPPPEND DEAFKLGKKI RQWIKDGKPE PGDEDEEDED EYEDDEDEDE EEIQKHDKEE PKKKKGRFGF FRR // ID A9A2C1_NITMS Unreviewed; 121 AA. AC A9A2C1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12832.1}; GN OrderedLocusNames=Nmar_0936 {ECO:0000313|EMBL:ABX12832.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12832.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12832.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12832.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12832.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0936; -. DR EnsemblBacteria; ABX12832; ABX12832; Nmar_0936. DR KEGG; nmr:Nmar_0936; -. DR eggNOG; arCOG08684; Archaea. DR eggNOG; ENOG411110D; LUCA. DR HOGENOM; HOG000108612; -. DR BioCyc; NMAR436308:GI3J-964-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 121 AA; 13565 MW; 235B10BDB6E2B8D4 CRC64; MSGKIYDYSK ICDTIKDADP KIRFAGVINE RGRLVAGGMK PNVEPLESEK DDEMIFMELA LRVKMRREFD KQLGTVNFAL ASRERALAIS VPINEDILYV AAEPDSDYGA LPKKILEIVN S // ID A9A372_NITMS Unreviewed; 453 AA. AC A9A372; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ABX12501.1}; GN OrderedLocusNames=Nmar_0605 {ECO:0000313|EMBL:ABX12501.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12501.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12501.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12501.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12501.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0605; -. DR REBASE; 16741; S1.NmaSCMORF606P. DR EnsemblBacteria; ABX12501; ABX12501; Nmar_0605. DR KEGG; nmr:Nmar_0605; -. DR eggNOG; arCOG02626; Archaea. DR eggNOG; COG0732; LUCA. DR HOGENOM; HOG000023863; -. DR KO; K01154; -. DR OMA; AANICEL; -. DR BioCyc; NMAR436308:GI3J-629-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0006304; P:DNA modification; IEA:InterPro. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR Pfam; PF01420; Methylase_S; 2. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 48 209 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT DOMAIN 260 433 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT COILED 416 443 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 453 AA; 52343 MW; 24099772B81AA48A CRC64; MAKVKPGYKL VKSLFGKYEE IPEDWNYVIL DKLTPKNEKS SIRMGPFGSS LKTHELLNSG KIKTLWIENI VNDKFTWKYQ KFITEEKYEK LKGFTVKPND VLITMMGTLG KTAIVPEDIG RAIISSHLLK ISLDHEKLLP KFLYYFLKSN FVYRQIIKES RGLVMGGLNT GIIKNLLIKT PKISEQQKIL SILSNVDNLI YSYEKIIDQT KHLKIGLLQQ LLTKGIKHKK FKKVFDRFGN YFEIPDSWEY VKIKKLVDEK RILEIQDGNH GELHPKSLDF IQKGIPFVTA DCLMNDNINY DLCKFLPEKF LKILRIGFAK QKDVLLSHKG SVGNVAVVGN KFDRIILSPQ TTYYRLSSKI IPKFLYYIFQ SFDFQKQLKS LAKQSTRDYI GITNQQNLLI PYISSIEEQE KIISVLSDVD SNISNLELKK KSLESLKKGL MQKLLTGKIR VKV // ID A9A202_NITMS Unreviewed; 99 AA. AC A9A202; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Signal recognition particle, subunit SRP19 (SRP19) {ECO:0000313|EMBL:ABX12415.1}; GN OrderedLocusNames=Nmar_0519 {ECO:0000313|EMBL:ABX12415.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12415.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12415.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12415.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12415.1; -; Genomic_DNA. DR ProteinModelPortal; A9A202; -. DR STRING; 436308.Nmar_0519; -. DR EnsemblBacteria; ABX12415; ABX12415; Nmar_0519. DR KEGG; nmr:Nmar_0519; -. DR eggNOG; arCOG01217; Archaea. DR eggNOG; COG1400; LUCA. DR HOGENOM; HOG000108970; -. DR KO; K03105; -. DR OMA; WLDYFNK; -. DR BioCyc; NMAR436308:GI3J-540-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0048500; C:signal recognition particle; IEA:InterPro. DR GO; GO:0008312; F:7S RNA binding; IEA:InterPro. DR GO; GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro. DR Gene3D; 3.30.56.30; -; 1. DR InterPro; IPR002778; Signal_recog_particle_SRP19. DR Pfam; PF01922; SRP19; 1. DR SUPFAM; SSF69695; SSF69695; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 99 AA; 11375 MW; AF77F3E0384946D1 CRC64; MKDYEHIVIW LDYFNKNLKK SKGRRLGLEK CVFDPSLKEL TDAAKAAGFE ITESDDKVRF PKRPFVRSGY VVLPKGSSKT KILNKISEKL VAKRSKQSK // ID A9A3Q2_NITMS Unreviewed; 246 AA. AC A9A3Q2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Orotidine 5'-phosphate decarboxylase {ECO:0000313|EMBL:ABX13314.1}; GN OrderedLocusNames=Nmar_1418 {ECO:0000313|EMBL:ABX13314.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13314.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13314.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13314.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13314.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Q2; -. DR STRING; 436308.Nmar_1418; -. DR EnsemblBacteria; ABX13314; ABX13314; Nmar_1418. DR KEGG; nmr:Nmar_1418; -. DR eggNOG; arCOG00081; Archaea. DR eggNOG; COG0284; LUCA. DR HOGENOM; HOG000226069; -. DR KO; K01591; -. DR OMA; IANPIMG; -. DR BioCyc; NMAR436308:GI3J-1453-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004590; F:orotidine-5'-phosphate decarboxylase activity; IEA:InterPro. DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR001754; OMPdeCOase_dom. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR Pfam; PF00215; OMPdecase; 1. DR SMART; SM00934; OMPdecase; 1. DR SUPFAM; SSF51366; SSF51366; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 239 OMPdecase. {ECO:0000259|SMART:SM00934}. SQ SEQUENCE 246 AA; 27083 MW; E50797283CD4BF40 CRC64; MLTFKTRLSQ IAKTNGKVIL ANDYDPSVKN LETKTISNIK KLHPYLCAVK LNFHLLLPLS SKQVLNINKT AHRYGLQTIA DIKLNDIGNT NRVTTENLWK MGFDAVIANP IMGLDSLKNL VKSAHKNGKG VITLCHMSAP EAKLSYDMEV KMRKKQQLYQ LFLDWALEAK VDGIVVGATF PKIIQYCSKK AGRKLSIFSP GVGTQGGNAS EVISAGTNYL IVGRTILNAK KPTDIAKDLQ LDSLGK // ID A9A5Z8_NITMS Unreviewed; 65 AA. AC A9A5Z8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE RecName: Full=30S ribosomal protein S27e {ECO:0000256|HAMAP-Rule:MF_00371}; GN Name=rps27e {ECO:0000256|HAMAP-Rule:MF_00371}; GN OrderedLocusNames=Nmar_1580 {ECO:0000313|EMBL:ABX13476.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13476.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13476.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13476.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00371}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00371}; CC -!- SIMILARITY: Belongs to the ribosomal protein S27e family. CC {ECO:0000256|HAMAP-Rule:MF_00371}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13476.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Z8; -. DR STRING; 436308.Nmar_1580; -. DR EnsemblBacteria; ABX13476; ABX13476; Nmar_1580. DR KEGG; nmr:Nmar_1580; -. DR eggNOG; arCOG04108; Archaea. DR eggNOG; COG2051; LUCA. DR HOGENOM; HOG000224976; -. DR KO; K02978; -. DR OMA; TTNINCK; -. DR BioCyc; NMAR436308:GI3J-1624-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 2.20.25.100; -; 1. DR HAMAP; MF_00371; Ribosomal_S27e; 1. DR InterPro; IPR000592; Ribosomal_S27e. DR InterPro; IPR023407; Ribosomal_S27e_Zn-bd_dom. DR InterPro; IPR011332; Ribosomal_zn-bd. DR Pfam; PF01667; Ribosomal_S27e; 1. DR SUPFAM; SSF57829; SSF57829; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00371}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00371, KW ECO:0000313|EMBL:ABX13476.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00371, KW ECO:0000313|EMBL:ABX13476.1}; Zinc {ECO:0000256|HAMAP-Rule:MF_00371}; KW Zinc-finger {ECO:0000256|HAMAP-Rule:MF_00371}. FT ZN_FING 20 42 C4-type. {ECO:0000256|HAMAP- FT Rule:MF_00371}. SQ SEQUENCE 65 AA; 6825 MW; F081EF01F13CC966 CRC64; MKKDHVEIPK PSSKFQKVNC NECGELQIVY SHASTQVACN SCGNAIAEAT GSKAKINGKV SGSAE // ID A9A134_NITMS Unreviewed; 187 AA. AC A9A134; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 57. DE RecName: Full=Protein GrpE {ECO:0000256|RuleBase:RU000639}; GN OrderedLocusNames=Nmar_0095 {ECO:0000313|EMBL:ABX11995.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11995.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11995.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11995.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Participates actively in the response to hyperosmotic CC and heat shock by preventing the aggregation of stress-denatured CC proteins, in association with DnaK and GrpE. It is the nucleotide CC exchange factor for DnaK and may function as a thermosensor. CC Unfolded proteins bind initially to DnaJ; upon interaction with CC the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting CC in the formation of a stable complex. GrpE releases ADP from DnaK; CC ATP binding to DnaK triggers the release of the substrate protein, CC thus completing the reaction cycle. Several rounds of ATP- CC dependent interactions between DnaJ, DnaK and GrpE are required CC for fully efficient folding. {ECO:0000256|RuleBase:RU000639}. CC -!- SIMILARITY: Belongs to the GrpE family. CC {ECO:0000256|RuleBase:RU004478}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11995.1; -; Genomic_DNA. DR ProteinModelPortal; A9A134; -. DR STRING; 436308.Nmar_0095; -. DR EnsemblBacteria; ABX11995; ABX11995; Nmar_0095. DR KEGG; nmr:Nmar_0095; -. DR eggNOG; arCOG04772; Archaea. DR eggNOG; COG0576; LUCA. DR KO; K03687; -. DR OMA; MSNDNES; -. DR BioCyc; NMAR436308:GI3J-97-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000774; F:adenyl-nucleotide exchange factor activity; IEA:InterPro. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 2.30.22.10; -; 1. DR Gene3D; 3.90.20.20; -; 1. DR HAMAP; MF_01151; GrpE; 1. DR InterPro; IPR000740; GrpE. DR InterPro; IPR013805; GrpE_coiled_coil. DR InterPro; IPR009012; GrpE_head. DR PANTHER; PTHR21237; PTHR21237; 1. DR Pfam; PF01025; GrpE; 1. DR PRINTS; PR00773; GRPEPROTEIN. DR SUPFAM; SSF51064; SSF51064; 1. DR PROSITE; PS01071; GRPE; 1. PE 3: Inferred from homology; KW Chaperone {ECO:0000256|RuleBase:RU000639}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Stress response {ECO:0000256|RuleBase:RU000639}. SQ SEQUENCE 187 AA; 21439 MW; 19E9D32519AD6C15 CRC64; MSNDNESDEI PVNVVTENKD DEPKKESESL ETVQENFSEL LDAEKQKTSE CEEKLKHILA DFQNLTRKTQ SDIQNGVNAK VDEFLLDFLK IYDDFIRARD VFSENKINTE GLDSILKNMD SLLKKYNVTA IDALGEIFDP NHHEAISVIT DPDLDDNTIT KEIRKGYISQ NRVIRTTLVE ISKKDDN // ID A9A4S6_NITMS Unreviewed; 188 AA. AC A9A4S6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13380.1}; GN OrderedLocusNames=Nmar_1484 {ECO:0000313|EMBL:ABX13380.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13380.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13380.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13380.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13380.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1484; -. DR EnsemblBacteria; ABX13380; ABX13380; Nmar_1484. DR KEGG; nmr:Nmar_1484; -. DR eggNOG; arCOG08639; Archaea. DR eggNOG; ENOG41110BC; LUCA. DR HOGENOM; HOG000105073; -. DR OMA; HAENFGM; -. DR BioCyc; NMAR436308:GI3J-1522-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 188 AA; 23033 MW; 4567218C4FC64E5F CRC64; MILHFIFLEK EEERAKRQFE YEYVKKMAQF FKVWIKEKFG KDYEIQCDEM ITKPTNIFQR IDTHTLIRDH EQRGKDIYHF YLTHFRPLWT DSTCDGYHAE NFGMVLWQKP KEENDELYLA EKNCTAVSNV IINEQLRQMG RKKHTREVND IWTKHLFEQL EFEQYGEDFK RTDGKPTFLT MDTRELNL // ID A9A1L5_NITMS Unreviewed; 206 AA. AC A9A1L5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Cytidyltransferase-related domain {ECO:0000313|EMBL:ABX13194.1}; GN OrderedLocusNames=Nmar_1298 {ECO:0000313|EMBL:ABX13194.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13194.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13194.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13194.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13194.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1L5; -. DR STRING; 436308.Nmar_1298; -. DR EnsemblBacteria; ABX13194; ABX13194; Nmar_1298. DR KEGG; nmr:Nmar_1298; -. DR eggNOG; arCOG01222; Archaea. DR eggNOG; COG0615; LUCA. DR HOGENOM; HOG000105343; -. DR KO; K00980; -. DR OMA; PGHIHTL; -. DR BioCyc; NMAR436308:GI3J-1331-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR004821; Cyt_trans-like. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF01467; CTP_transf_like; 1. DR TIGRFAMs; TIGR00125; cyt_tran_rel; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13194.1}. FT DOMAIN 70 179 CTP_transf_like. FT {ECO:0000259|Pfam:PF01467}. SQ SEQUENCE 206 AA; 23000 MW; 57B84ED37B3D714D CRC64; MLEQSQRTIL STIYVCQIEG TNPIEKIKRK TAFSDDQINS KIEELIKKQL VNEDKKTLTE SGRDSLKVVL AGGVFDIIHP GHIHTLNAAK ELGDALVVVV ATDNTAVKMK KRRPLHSQEQ RQELVNSLSM VDLCLIGQED DIFKTVNNVR PQIIALGYDQ AHQEKFITEG CKKINLDAKV ARLQSPIPDS SSSKIEKEYG ESIHGI // ID A9A3J2_NITMS Unreviewed; 379 AA. AC A9A3J2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ABX12924.1}; DE EC=1.1.1.157 {ECO:0000313|EMBL:ABX12924.1}; GN OrderedLocusNames=Nmar_1028 {ECO:0000313|EMBL:ABX12924.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12924.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12924.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12924.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12924.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3J2; -. DR STRING; 436308.Nmar_1028; -. DR EnsemblBacteria; ABX12924; ABX12924; Nmar_1028. DR KEGG; nmr:Nmar_1028; -. DR eggNOG; arCOG00249; Archaea. DR eggNOG; COG1250; LUCA. DR HOGENOM; HOG000141498; -. DR KO; K15016; -. DR OMA; CPLLKEM; -. DR BioCyc; NMAR436308:GI3J-1059-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003857; F:3-hydroxyacyl-CoA dehydrogenase activity; IEA:InterPro. DR GO; GO:0008691; F:3-hydroxybutyryl-CoA dehydrogenase activity; IEA:UniProtKB-EC. DR GO; GO:0006631; P:fatty acid metabolic process; IEA:InterPro. DR Gene3D; 1.10.1040.10; -; 2. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR006176; 3-OHacyl-CoA_DH_NAD-bd. DR InterPro; IPR006108; 3HC_DH_C. DR InterPro; IPR008927; 6-PGluconate_DH_C-like. DR InterPro; IPR013328; 6PGD_dom_2. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00725; 3HCDH; 2. DR Pfam; PF02737; 3HCDH_N; 1. DR SUPFAM; SSF48179; SSF48179; 2. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12924.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 185 3HCDH_N. {ECO:0000259|Pfam:PF02737}. FT DOMAIN 188 283 3HCDH. {ECO:0000259|Pfam:PF00725}. FT DOMAIN 306 378 3HCDH. {ECO:0000259|Pfam:PF00725}. SQ SEQUENCE 379 AA; 42300 MW; ED5D0F84DD95FF80 CRC64; MAVKNITILG SGVMGHGIAQ VSATAGYNVV LRDIEQGFLD KAMEKIRWSL DKLVSKEKIS KEEGDSIFGR ITPVVDLKEA VKDAELVIEV VPEIMDLKKK VYAELDEVAA PEVIFASNTS TLPITEIANT TSRPDKFIGI HFFNPPQLMK LVEVIPGEKT SQEITDLTKD YVKSVNKQAV LCRKDVPGFI INRLFIPMVH EACYAKDRTG ATLEEIDSAV KFNLGFPMGI FELADFTGMD VIHKATVEMH LRDKKVINPH PTVEKMFDEK KLGQKSGEGY YKYSDDKYER VELSQELAQK FNPIQLVANI LNNAAWLVTN GASDIEEIEK AAQLGLGLKK PLFETAKEIG IKNIVDELNK LAEEHGEFYK PDPLLTSMQ // ID A9A1G9_NITMS Unreviewed; 221 AA. AC A9A1G9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABX13148.1}; GN OrderedLocusNames=Nmar_1252 {ECO:0000313|EMBL:ABX13148.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13148.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13148.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13148.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13148.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1G9; -. DR STRING; 436308.Nmar_1252; -. DR EnsemblBacteria; ABX13148; ABX13148; Nmar_1252. DR KEGG; nmr:Nmar_1252; -. DR eggNOG; arCOG08717; Archaea. DR eggNOG; ENOG4112907; LUCA. DR HOGENOM; HOG000107588; -. DR OMA; EVFQVNC; -. DR BioCyc; NMAR436308:GI3J-1285-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016209; F:antioxidant activity; IEA:InterPro. DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 2. DR InterPro; IPR000866; AhpC/TSA. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF00578; AhpC-TSA; 1. DR SUPFAM; SSF52833; SSF52833; 2. DR PROSITE; PS51352; THIOREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 167 Thioredoxin. FT {ECO:0000259|PROSITE:PS51352}. SQ SEQUENCE 221 AA; 24933 MW; 77E833FD2FF08A40 CRC64; MSAVIGEKVP NFGVSDWVQG APTNFDQEKD HIVLVEVFQV NCPGCFMHAL PEAIEIYNKY KDDGVRVIGI ATAFEDFDKN TLDNLKMLAE TGEIVGETKS AFQMSGQLQE GDKLPYKIPF PLAMDNLVKT TGEISQEKIM EFIYPQIPEF DSQPEDYRNQ IIQRVKDYMK SKEYSAETFE KFALRGTPST ILVDRKGVLR DVSFGQVGQA EAMIQKLLSE D // ID A9A1A2_NITMS Unreviewed; 246 AA. AC A9A1A2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:ABX12388.1}; GN OrderedLocusNames=Nmar_0492 {ECO:0000313|EMBL:ABX12388.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12388.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12388.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12388.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the precorrin methyltransferase family. CC {ECO:0000256|RuleBase:RU003960}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12388.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1A2; -. DR STRING; 436308.Nmar_0492; -. DR EnsemblBacteria; ABX12388; ABX12388; Nmar_0492. DR KEGG; nmr:Nmar_0492; -. DR eggNOG; arCOG00644; Archaea. DR eggNOG; COG0007; LUCA. DR HOGENOM; HOG000290519; -. DR KO; K02303; -. DR OMA; DAMLPLT; -. DR BioCyc; NMAR436308:GI3J-512-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR GO; GO:0043115; F:precorrin-2 dehydrogenase activity; IEA:InterPro. DR GO; GO:0006779; P:porphyrin-containing compound biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.950.10; -; 1. DR Gene3D; 3.40.1010.10; -; 1. DR InterPro; IPR000878; 4pyrrol_Mease. DR InterPro; IPR014777; 4pyrrole_Mease_sub1. DR InterPro; IPR014776; 4pyrrole_Mease_sub2. DR InterPro; IPR006366; CobA/CysG_C. DR InterPro; IPR003043; Uropor_MeTrfase_CS. DR Pfam; PF00590; TP_methylase; 1. DR SUPFAM; SSF53790; SSF53790; 1. DR TIGRFAMs; TIGR01469; cobA_cysG_Cterm; 1. DR PROSITE; PS00839; SUMT_1; 1. DR PROSITE; PS00840; SUMT_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000256|RuleBase:RU003960, KW ECO:0000313|EMBL:ABX12388.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU003960, KW ECO:0000313|EMBL:ABX12388.1}. FT DOMAIN 4 216 TP_methylase. {ECO:0000259|Pfam:PF00590}. SQ SEQUENCE 246 AA; 26846 MW; 6A9AA85C3E25EB01 CRC64; MTGKVYLVGA GPGDSKLITL RAVELLKKAD VVLYDRLVSK KIISMIPKKT KKVYVGRAVG DDTTHQNTTN DLMVKYAKSK KNVVRLKGGD PIIFGRGGEE AEFLKENKVK YEIVPGITSG IGSATYAGIP LTHRKHASSV VFVTGHEDPE KKQEIVKWKR LAKSVDTIVI MMGLSRINII CKQLIAGGMD KKTPVAVIQN GTTPKQKMIK GTVTNIAKKV KENKITPPAN IIIGNVVDLS ETIGWK // ID A9A5S3_NITMS Unreviewed; 440 AA. AC A9A5S3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 56. DE SubName: Full=DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABX13078.1}; GN OrderedLocusNames=Nmar_1182 {ECO:0000313|EMBL:ABX13078.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13078.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13078.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13078.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13078.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5S3; -. DR STRING; 436308.Nmar_1182; -. DR EnsemblBacteria; ABX13078; ABX13078; Nmar_1182. DR KEGG; nmr:Nmar_1182; -. DR eggNOG; arCOG00558; Archaea. DR eggNOG; COG0513; LUCA. DR HOGENOM; HOG000268807; -. DR KO; K05592; -. DR OMA; YMVPRGW; -. DR BioCyc; NMAR436308:GI3J-1215-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF00271; Helicase_C; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS51195; Q_MOTIF; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX13078.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Helicase {ECO:0000256|RuleBase:RU000452, ECO:0000313|EMBL:ABX13078.1}; KW Hydrolase {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX13078.1}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU000452, KW ECO:0000313|EMBL:ABX13078.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 30 Q_MOTIF. {ECO:0000259|PROSITE:PS51195}. FT DOMAIN 33 202 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 213 382 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. SQ SEQUENCE 440 AA; 49160 MW; 74707CD6CC708130 CRC64; MTKFQELGLK EDILKGLNDL GFEEAFPIQE AVIPVLLTGR DVVGQAHTGS GKTAAFSLSM LQEIQPKNGI QGLIMAPTRE LAMQITDEIK KFGKYTGIKV ATVYGGQGMG LQLDALERGV EIVVATPGRL IDHLKRGSIE LRDVTHIVLD EADTMLDMGF IDDIGFILDL APEDRVMSLF SATMPTEILR LSEEYLNNPK QFLLDADDLS GEGIDQSYLV IKDRDKFKYL IDFIKPTKGQ AIVFCSTKYR TRDVAKFLHQ EKFDAVAIEG DMSQHRREQS MGKFRSGKAD ILVATDVASR GIDVPRVELV INYDVPNQEM AYFHRIGRTA RAGAKGKAVT FVSYSSVGDW NLIKRQIKVP IKDLNEEMGI EIAIPDPLKR QMPSRRYGGQ SRSNYSRGGR SGGYGRSGGR RDSRDDRGGG RRRYNDRGSN RNHYGGRSRW // ID A9A3G0_NITMS Unreviewed; 132 AA. AC A9A3G0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12892.1}; GN OrderedLocusNames=Nmar_0996 {ECO:0000313|EMBL:ABX12892.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12892.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12892.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12892.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12892.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0996; -. DR EnsemblBacteria; ABX12892; ABX12892; Nmar_0996. DR KEGG; nmr:Nmar_0996; -. DR eggNOG; arCOG05565; Archaea. DR eggNOG; ENOG4111ZU8; LUCA. DR HOGENOM; HOG000105040; -. DR OMA; GPINYLA; -. DR BioCyc; NMAR436308:GI3J-1024-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 132 AA; 14635 MW; F177B573973C333B CRC64; MTSPDGLNLY AEKCKKLLEE SEIRFAGIVD KDGQLISGGF KEGLTPYEGD ETRLQSFLDF VSKASIRKEY DESLGPINYL AARRDKAVLV SFPFPITQIL LLISAEPTAN IENLAKKVVE IFTDVSKKMT GT // ID A9A3J4_NITMS Unreviewed; 169 AA. AC A9A3J4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 39. DE SubName: Full=Rossmann fold nucleotide-binding protein {ECO:0000313|EMBL:ABX12926.1}; GN OrderedLocusNames=Nmar_1030 {ECO:0000313|EMBL:ABX12926.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12926.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12926.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12926.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12926.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3J4; -. DR STRING; 436308.Nmar_1030; -. DR EnsemblBacteria; ABX12926; ABX12926; Nmar_1030. DR KEGG; nmr:Nmar_1030; -. DR eggNOG; arCOG02431; Archaea. DR eggNOG; COG1611; LUCA. DR HOGENOM; HOG000156896; -. DR KO; K06966; -. DR OMA; QMRSFIL; -. DR BioCyc; NMAR436308:GI3J-1061-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR005268; CHP00725. DR InterPro; IPR031100; LOG_fam. DR Pfam; PF03641; Lysine_decarbox; 1. DR TIGRFAMs; TIGR00725; TIGR00725; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 169 AA; 17776 MW; 03FF029E638785B1 CRC64; MVKKRQILVI GNNTNGCTPE HEKIAYDIGV EIAKSDSVLI TGGLGGIMTA ASRGAKDTDG LTVGIIPQDD ASEANEYCDI VIPTGMGFTR DFLNALSADG VIIVGGGSGT LSEVCASYMS KKPMVAIRNL NGSVEQYIDG YLDHRENVKI VGVDNAQEAV TKIIELISA // ID A9A4Q6_NITMS Unreviewed; 232 AA. AC A9A4Q6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13034.1}; GN OrderedLocusNames=Nmar_1138 {ECO:0000313|EMBL:ABX13034.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13034.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13034.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13034.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13034.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13034; ABX13034; Nmar_1138. DR KEGG; nmr:Nmar_1138; -. DR eggNOG; arCOG09751; Archaea. DR eggNOG; ENOG4111VKD; LUCA. DR KO; K17247; -. DR OMA; RSELGIW; -. DR BioCyc; NMAR436308:GI3J-1170-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR013130; Fe3_Rdtase_TM_dom. DR Pfam; PF01794; Ferric_reduct; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 50 67 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 79 99 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 125 147 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 168 186 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 219 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 50 173 Ferric oxidoreductase. FT {ECO:0000259|Pfam:PF01794}. SQ SEQUENCE 232 AA; 26939 MW; E52A827FA9334D2A CRC64; MIKLKIKNNF VTRHSLVFSI ALSLTFVFWL AHYEWHDEMR LWRAFGDSGY TLLFVTLIIG PLSKIWTRTS FLLKWRREFG IWFAALATTH GILIAHGWAN WDVAQFFGYE FVPQLGRMVR LEPGFGLANT LGFVAFLWIA IMAITSSDRA MKWLGASSWK WIHTGSHIVF YLVAIHTSYF LFIHYTESFH KNVPPESTFI IPFVAMSVIV LALQISSYIK VVRSKNKRIV QK // ID A9A2D1_NITMS Unreviewed; 62 AA. AC A9A2D1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12842.1}; GN OrderedLocusNames=Nmar_0946 {ECO:0000313|EMBL:ABX12842.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12842.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12842.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12842.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12842.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0946; -. DR EnsemblBacteria; ABX12842; ABX12842; Nmar_0946. DR KEGG; nmr:Nmar_0946; -. DR eggNOG; arCOG08648; Archaea. DR eggNOG; ENOG41110WP; LUCA. DR OMA; ETAMINR; -. DR BioCyc; NMAR436308:GI3J-974-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 62 AA; 7204 MW; 0BDCD3A9FF141383 CRC64; MASYTAEVNA IHKKFNNAVK KAKTKKSLNK AYSVHKKAHE RLLKKHLREE TAMINRAKKK LE // ID A9A2U0_NITMS Unreviewed; 414 AA. AC A9A2U0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 46. DE SubName: Full=Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:ABX13617.1}; GN OrderedLocusNames=Nmar_1721 {ECO:0000313|EMBL:ABX13617.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13617.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13617.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13617.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13617.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2U0; -. DR STRING; 436308.Nmar_1721; -. DR EnsemblBacteria; ABX13617; ABX13617; Nmar_1721. DR KEGG; nmr:Nmar_1721; -. DR eggNOG; arCOG01704; Archaea. DR eggNOG; COG0452; LUCA. DR HOGENOM; HOG000037525; -. DR KO; K13038; -. DR OMA; VRFIGNH; -. DR BioCyc; NMAR436308:GI3J-1766-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR GO; GO:0004632; F:phosphopantothenate--cysteine ligase activity; IEA:InterPro. DR GO; GO:0004633; F:phosphopantothenoylcysteine decarboxylase activity; IEA:InterPro. DR GO; GO:0015937; P:coenzyme A biosynthetic process; IEA:InterPro. DR GO; GO:0015941; P:pantothenate catabolic process; IEA:InterPro. DR Gene3D; 3.40.50.10300; -; 1. DR Gene3D; 3.40.50.1950; -; 1. DR InterPro; IPR005252; CoaBC. DR InterPro; IPR007085; DNA/pantothenate-metab_flavo_C. DR InterPro; IPR003382; Flavoprotein. DR Pfam; PF04127; DFP; 1. DR Pfam; PF02441; Flavoprotein; 1. DR SUPFAM; SSF102645; SSF102645; 1. DR SUPFAM; SSF52507; SSF52507; 1. DR TIGRFAMs; TIGR00521; coaBC_dfp; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX13617.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 26 152 Flavoprotein. {ECO:0000259|Pfam:PF02441}. FT DOMAIN 199 384 DFP. {ECO:0000259|Pfam:PF04127}. SQ SEQUENCE 414 AA; 45257 MW; C9F1079CC997161F CRC64; MAAKKKVNDH PSLDIVSSHG VELTGKKIVL CVAGSVAAYK AIELARLLMR HGADVTCVAS GAVTKLIQPD YFKWATGNDV ITKLTGKLEH IKLADYNQSD LVIVYPATAN TLGKLANGID DTPISTVLTV GFGSKIPILM CLAMHESMYD NSAVKKNIEF LKNKIQFLSP QMIEGKAKAP EPEDVLDFVL KKFGFSSTLQ NKKVLMTAGP TIEYIDPVRV ITNLSSGKTG VLLASELISA GAKVTLIYGP GNEEPPKGAK IINVTTNKEM LDATKKELKK KYDIVIMAAA ASDYTPEKPT KSKIKSNKKA LTIRLKKAPK IIDQVKKSQK NTILVGFKAE TNLSKSALIK SAKTKLKESN ADIIIANDIG TKYQKNPNNN QIIIVDEKNT ITSGWKKKEK IVKIIRKEIE KKIR // ID A9A4K9_NITMS Unreviewed; 386 AA. AC A9A4K9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Transcriptional regulator, TrmB {ECO:0000313|EMBL:ABX12987.1}; GN OrderedLocusNames=Nmar_1091 {ECO:0000313|EMBL:ABX12987.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12987.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12987.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12987.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12987.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4K9; -. DR STRING; 436308.Nmar_1091; -. DR EnsemblBacteria; ABX12987; ABX12987; Nmar_1091. DR KEGG; nmr:Nmar_1091; -. DR eggNOG; arCOG02037; Archaea. DR eggNOG; COG1378; LUCA. DR HOGENOM; HOG000107165; -. DR OMA; FHISANN; -. DR BioCyc; NMAR436308:GI3J-1122-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR002831; Tscrpt_reg_TrmB_N. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01978; TrmB; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 11 78 TrmB. {ECO:0000259|Pfam:PF01978}. SQ SEQUENCE 386 AA; 42971 MW; B44DE77C562888F7 CRC64; MVNEHALTVS LEEFGLSKYE AQAYVALIAK GTISAGELAY YSEIPRTKIY PTLQKLENKK LAIISKSKPI MCTAIAPEDA FDGIIHEQIN KVNAMNTLVS NLKKASEESR KSRGSEEKRY FHISANNVLS QLQTMIEGSK SSIKIMADQW GFGLLAECKE QLVAVLRRNL DVKVIVPPTQ ICSEAYRIIP DGVEIRASDI TQNCFIFDET ELLMVNNENG KGAIFSSTDI LGVNQEKVFS HVWKNATKTK ALADMTKAEA QEIYKIIKTV NETGLTHILN STMFSKKPEF DLFKLLEKSG VSLKSKSLDD IIEIMDAVLQ ITCSGHVNFE ANTKNITVES KLNSGHSLPW VSILDGCLQK QGYKTRTVFQ NNSSKGEKVH IKISKN // ID A9A1L4_NITMS Unreviewed; 345 AA. AC A9A1L4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=Diphthine synthase {ECO:0000313|EMBL:ABX13193.1}; DE EC=2.1.1.98 {ECO:0000313|EMBL:ABX13193.1}; GN OrderedLocusNames=Nmar_1297 {ECO:0000313|EMBL:ABX13193.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13193.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13193.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13193.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13193.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1L4; -. DR STRING; 436308.Nmar_1297; -. DR EnsemblBacteria; ABX13193; ABX13193; Nmar_1297. DR KEGG; nmr:Nmar_1297; -. DR eggNOG; arCOG01224; Archaea. DR eggNOG; arCOG04161; Archaea. DR eggNOG; COG1798; LUCA. DR HOGENOM; HOG000105332; -. DR KO; K00586; -. DR OMA; EDTICIG; -. DR BioCyc; NMAR436308:GI3J-1330-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004164; F:diphthine synthase activity; IEA:UniProtKB-EC. DR GO; GO:0017183; P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine; IEA:InterPro. DR Gene3D; 1.20.1270.90; -; 1. DR Gene3D; 3.30.950.10; -; 1. DR Gene3D; 3.40.1010.10; -; 1. DR InterPro; IPR000878; 4pyrrol_Mease. DR InterPro; IPR014777; 4pyrrole_Mease_sub1. DR InterPro; IPR014776; 4pyrrole_Mease_sub2. DR InterPro; IPR004551; Dphthn_synthase. DR InterPro; IPR023140; DUF357. DR Pfam; PF04010; DUF357; 1. DR Pfam; PF00590; TP_methylase; 1. DR SUPFAM; SSF158372; SSF158372; 1. DR SUPFAM; SSF53790; SSF53790; 1. DR TIGRFAMs; TIGR00522; dph5; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX13193.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13193.1}. FT DOMAIN 1 220 TP_methylase. {ECO:0000259|Pfam:PF00590}. FT DOMAIN 273 339 DUF357. {ECO:0000259|Pfam:PF04010}. SQ SEQUENCE 345 AA; 39018 MW; C025EC2ABFAFB8AB CRC64; MLWFVGLGIS GFKSIPNEAI DVLAKADIVY LEQFTSPIGK SDLTKIKNAT KGEFRPAKRW LVEDGNEILE NAKKKKVVLL SYGDPYIATT HIELRERAIK EKIKTYSIHA SSSLTSMIGE CGLHFYKVGR IATIMSEMKS LTTPYYVIYK NVIEGNHTVL LLEFNQDKDF FLDPKDALNE LLETEKGQRR KVISPSTFAI VASRIGFKDQ EIVSGKISSL KKRDFGKPPH TVIIPGRLHF TESDALKVLG ECIDEPFDNS EKTRKISVQM IEKYVPMVRE ALEEVQPYYK DQKEFQVILE NAELYVKDAE KFLEDGQDEV AILSIGYADG LVDALRLAKG LDPKM // ID A9A2C3_NITMS Unreviewed; 296 AA. AC A9A2C3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=UbiA prenyltransferase {ECO:0000313|EMBL:ABX12834.1}; GN OrderedLocusNames=Nmar_0938 {ECO:0000313|EMBL:ABX12834.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12834.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12834.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12834.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12834.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0938; -. DR EnsemblBacteria; ABX12834; ABX12834; Nmar_0938. DR KEGG; nmr:Nmar_0938; -. DR eggNOG; arCOG00480; Archaea. DR eggNOG; COG1575; LUCA. DR HOGENOM; HOG000023854; -. DR KO; K02548; -. DR OMA; TRWITRS; -. DR BioCyc; NMAR436308:GI3J-966-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0004659; F:prenyltransferase activity; IEA:InterPro. DR InterPro; IPR000537; UbiA_prenyltransferase. DR InterPro; IPR026046; UBIAD1. DR Pfam; PF01040; UbiA; 1. DR PIRSF; PIRSF005355; UBIAD1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12834.1}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 93 111 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 117 133 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 165 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 171 192 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 213 230 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 268 294 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 296 AA; 32021 MW; 8701F901E1B989C1 CRC64; MLSVWFRVIR IRFLLASVIA VSVGLALNWW QNSTIEPFDA FLTFAGVMAL HASVDLLNDF WDFKRGIDAK TPKTKMSGGT GVLPEGLLKP SSVYRAGIAF LVIGSAIGAY FVITDGIIIA VILGFAILSI YFYSTKIVDS GLGEFFVAVK GSMIVLGTFF IQSGQITVES ILAGIVVGSL SSLVLFIASF PDHDADKSKG RKTLVIAVGK QKATKLFWIF PIVSYCVIIL GVSLNLFPTI TLVTFLSVPL VIKSGFGLKK TYDSVEKLVP FMSSTLMFSR ITGALFVLSF LIGITV // ID A9A4J2_NITMS Unreviewed; 389 AA. AC A9A4J2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12970.1}; GN OrderedLocusNames=Nmar_1074 {ECO:0000313|EMBL:ABX12970.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12970.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12970.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12970.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12970.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1074; -. DR EnsemblBacteria; ABX12970; ABX12970; Nmar_1074. DR KEGG; nmr:Nmar_1074; -. DR BioCyc; NMAR436308:GI3J-1105-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 50 129 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 389 AA; 43430 MW; C5E9BD79897AD518 CRC64; MSSKILLLAI VPIVIGVISV SYLNDESIET KFLPTYSVVP LGGDVSEIVL EKSTAVLQEN EELKDRVEQT AEQIIQAEQQ RADLAEKISA LENQVSVIED IRSSSDEKTE LLQQEITKLE AQIEEFKSQP AATVQPTPEQ EDSIAALEAK IRELEEAQDD PDEDSIFASL TGFEREILVE TSKVPEVAMD EGTISWDFTD SRGNSYTFSK LSDDFIDEVV RLPAPQDTLS ITLAGVGQGG TAETVEIRDL SKFVTGQMPK PMNELYNTVT TPGEFIFEVW WIVSQFELTS YEMQPDPKHP LDTFSKGEGD NEDLAILMAD MIKSSDIGKT WELRFIYFDS DNPSTPQKIN HVALLIESEQ DTWLVEPTAK TIEDAFVKRD KVRGNLAPI // ID A9A1T9_NITMS Unreviewed; 274 AA. AC A9A1T9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ABX12060.1}; GN OrderedLocusNames=Nmar_0164 {ECO:0000313|EMBL:ABX12060.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12060.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12060.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12060.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12060.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T9; -. DR STRING; 436308.Nmar_0164; -. DR EnsemblBacteria; ABX12060; ABX12060; Nmar_0164. DR KEGG; nmr:Nmar_0164; -. DR eggNOG; arCOG00600; Archaea. DR eggNOG; COG0517; LUCA. DR BioCyc; NMAR436308:GI3J-165-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR000644; CBS_dom. DR Pfam; PF00571; CBS; 3. DR SMART; SM00116; CBS; 3. DR PROSITE; PS51371; CBS; 4. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 63 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 72 126 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 133 190 CBS. {ECO:0000259|PROSITE:PS51371}. FT DOMAIN 216 274 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 274 AA; 30994 MW; 13D2241F36ACA390 CRC64; MKIAKNVMNS PITIDKKISI GETISKLLKE KISRVLISED SVITRIVSEK DICHFLLEKQ NESINKIPIE QISKKIFSIN AEEDLKSCTK EMVQKNIGSL GIKSEKINGI LTKTDIVKNI QAELKEKKAV EIMSNDYLWE FSDLPINHIF KKMIDFNISR LILKEENEIS SGIITIRDLL KLGFRNLNTS SIQSEELDTG LLFERFYSDK IKGQELSSKE IISVPMMENL SKVCSLLLKE GIDGVGVLND NNIIWGVLTK TDLLKSYING KNSS // ID A9A1J5_NITMS Unreviewed; 106 AA. AC A9A1J5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13174.1}; GN OrderedLocusNames=Nmar_1278 {ECO:0000313|EMBL:ABX13174.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13174.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13174.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13174.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13174.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1278; -. DR EnsemblBacteria; ABX13174; ABX13174; Nmar_1278. DR KEGG; nmr:Nmar_1278; -. DR eggNOG; arCOG08680; Archaea. DR eggNOG; ENOG411107D; LUCA. DR HOGENOM; HOG000023844; -. DR BioCyc; NMAR436308:GI3J-1311-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 106 AA; 11453 MW; 71756A46E8710F0B CRC64; MLEQKTTQKK PPVIPVIALM AGGLAVMLIL LLTPWNFVPV EVTEAITVLE VTEYGCVGES MYGVSVVVSE CSAKVGDVVS ASFYIPAMEV NGFYDKVQER VMAVQP // ID A9A473_NITMS Unreviewed; 81 AA. AC A9A473; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12257.1}; GN OrderedLocusNames=Nmar_0361 {ECO:0000313|EMBL:ABX12257.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12257.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12257.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12257.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12257.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0361; -. DR EnsemblBacteria; ABX12257; ABX12257; Nmar_0361. DR KEGG; nmr:Nmar_0361; -. DR BioCyc; NMAR436308:GI3J-377-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 81 AA; 9231 MW; 0EC41F8FC7FE1D04 CRC64; MRPIIPLSIV IVVAAIVGIL GSSNYDVYVA ERDQRNLQLA VDDCKKLFPQ GINQEECITK SLDVFGTEYQ KEQWSQRDIY P // ID A9A602_NITMS Unreviewed; 279 AA. AC A9A602; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE RecName: Full=Probable cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; GN Name=cobQ {ECO:0000256|HAMAP-Rule:MF_00028}; GN OrderedLocusNames=Nmar_1584 {ECO:0000313|EMBL:ABX13480.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13480.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13480.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13480.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes amidations at positions B, D, E, and G on CC adenosylcobyrinic A,C-diamide. NH(2) groups are provided by CC glutamine, and one molecule of ATP is hydrogenolyzed for each CC amidation. {ECO:0000256|HAMAP-Rule:MF_00028}. CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00028}. CC -!- SIMILARITY: Belongs to the CobB/CobQ family. CobQ subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00028}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13480.1; -; Genomic_DNA. DR ProteinModelPortal; A9A602; -. DR STRING; 436308.Nmar_1584; -. DR EnsemblBacteria; ABX13480; ABX13480; Nmar_1584. DR KEGG; nmr:Nmar_1584; -. DR eggNOG; arCOG00105; Archaea. DR eggNOG; COG1492; LUCA. DR HOGENOM; HOG000110930; -. DR KO; K02232; -. DR OMA; MSNVGKS; -. DR BioCyc; NMAR436308:GI3J-1628-MONOMER; -. DR UniPathway; UPA00148; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0015420; F:cobalamin-transporting ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway. DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00028; CobQ; 1. DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom. DR InterPro; IPR004459; CobQ_synth. DR InterPro; IPR027417; P-loop_NTPase. DR Pfam; PF01656; CbiA; 1. DR SUPFAM; SSF52540; SSF52540; 1. PE 3: Inferred from homology; KW Cobalamin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00028}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00028}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 235 CbiA. {ECO:0000259|Pfam:PF01656}. SQ SEQUENCE 279 AA; 30971 MW; AE175409C1A1FE20 CRC64; MKPLMVQGTS SGAGKSTLVA ALCRIFEQKG YLVAPFKSQN MSNFGYATPD FEISRAQAIQ AIAAKCPIEP DFNPIMLKPL GNYYSAVYLN GKHYKKMHAK EYYTKFVKSK GLKAATTSLS KLKKNYDLVI LEGAGSPAEI NLQKYDIANM QIAQKANASV LLISDIDKGG SFASLVGTMN LIENKYKKLV KGFVLNKFRG DIDVLKPGFR KIKQLTKIPV IGTIPMMQVD LPEEDSLNVK AKQIAWTKKN ISKIDKDLDK LAKIVKNNLD IKAIERMIK // ID A9A2I3_NITMS Unreviewed; 171 AA. AC A9A2I3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 57. DE SubName: Full=Transcriptional regulator, TrmB {ECO:0000313|EMBL:ABX13222.1}; GN OrderedLocusNames=Nmar_1326 {ECO:0000313|EMBL:ABX13222.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13222.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13222.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13222.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 1 HTH arsR-type DNA-binding domain. CC {ECO:0000256|RuleBase:RU000711}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13222.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2I3; -. DR STRING; 436308.Nmar_1326; -. DR EnsemblBacteria; ABX13222; ABX13222; Nmar_1326. DR KEGG; nmr:Nmar_1326; -. DR eggNOG; arCOG02611; Archaea. DR eggNOG; COG3398; LUCA. DR OMA; HINESDE; -. DR BioCyc; NMAR436308:GI3J-1360-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW. DR Gene3D; 1.10.10.10; -; 2. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR SMART; SM00418; HTH_ARSR; 1. DR SUPFAM; SSF46785; SSF46785; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|RuleBase:RU000711}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU000711}; KW Transcription regulation {ECO:0000256|RuleBase:RU000711}. FT DOMAIN 71 148 HTH arsR-type DNA-binding. FT {ECO:0000259|SMART:SM00418}. SQ SEQUENCE 171 AA; 19974 MW; 921CEDE898B32CA1 CRC64; MDEVLASPKE KILDFIINNP GSHLRMIKKN VQFSMGTVQY HLNTLEKEGK IKSSKTRFYK NYYHINESDE KLLSVFNLES PRSIIMYLLQ HQPSTHQEIA KGIELSSSTV SWHMKRLLES NIVESEYSGK YTLYRLVDRE KVLENLKKCS STTWNSMINS MVDIFSAFEQ K // ID A9A5C0_NITMS Unreviewed; 194 AA. AC A9A5C0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=3-isopropylmalate dehydratase, small subunit {ECO:0000313|EMBL:ABX12319.1}; DE EC=4.2.1.33 {ECO:0000313|EMBL:ABX12319.1}; GN OrderedLocusNames=Nmar_0423 {ECO:0000313|EMBL:ABX12319.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12319.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12319.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12319.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12319.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5C0; -. DR STRING; 436308.Nmar_0423; -. DR EnsemblBacteria; ABX12319; ABX12319; Nmar_0423. DR KEGG; nmr:Nmar_0423; -. DR eggNOG; arCOG02230; Archaea. DR eggNOG; COG0066; LUCA. DR HOGENOM; HOG000222939; -. DR KO; K01704; -. DR OMA; AFTTHTG; -. DR BioCyc; NMAR436308:GI3J-441-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0009316; C:3-isopropylmalate dehydratase complex; IEA:InterPro. DR GO; GO:0003861; F:3-isopropylmalate dehydratase activity; IEA:UniProtKB-EC. DR GO; GO:0009098; P:leucine biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.19.10; -; 1. DR HAMAP; MF_01031; LeuD_type1; 1. DR InterPro; IPR004431; 3-IsopropMal_deHydase_ssu. DR InterPro; IPR015937; Acoase/IPM_deHydtase. DR InterPro; IPR015928; Aconitase/3IPM_dehydase_swvl. DR InterPro; IPR000573; AconitaseA/IPMdHydase_ssu_swvl. DR PANTHER; PTHR11670; PTHR11670; 1. DR Pfam; PF00694; Aconitase_C; 1. DR SUPFAM; SSF52016; SSF52016; 1. DR TIGRFAMs; TIGR00171; leuD; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX12319.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 123 Aconitase_C. {ECO:0000259|Pfam:PF00694}. SQ SEQUENCE 194 AA; 22151 MW; CF9063F0FB57BA1F CRC64; MEPFKKTTSI VTPLDKVNVD TDQIVPKQFL KLVQKSGFGK FLFFNWRYDE NENPKSDFVL NDSKYDNSHI LVAGDNFGCG SSREHAVWAL QDYGFSVIIA PSFADIFFSN CFKNGILPIS LEQSVVEKLQ QESEPIEVDL ENQIIKTSSD EIHFEIDSHK KKILLEGLDD IAQTYQFEDK ISEFEKQSTV PSVL // ID A9A418_NITMS Unreviewed; 253 AA. AC A9A418; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12202.1}; GN OrderedLocusNames=Nmar_0306 {ECO:0000313|EMBL:ABX12202.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12202.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12202.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12202.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12202.1; -; Genomic_DNA. DR ProteinModelPortal; A9A418; -. DR STRING; 436308.Nmar_0306; -. DR EnsemblBacteria; ABX12202; ABX12202; Nmar_0306. DR KEGG; nmr:Nmar_0306; -. DR eggNOG; arCOG01631; Archaea. DR eggNOG; COG0500; LUCA. DR HOGENOM; HOG000109503; -. DR OMA; DVFYHLG; -. DR BioCyc; NMAR436308:GI3J-320-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 65 92 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 253 AA; 29262 MW; 27F4C9823EADAAA8 CRC64; MRIDEYLDTL PENLLNGEDV QLPEKSLRSI FKFVKLTKDD IFYHLGCSDE KGIEIAVKEF QVEKAVGIDN NCEKIENAKK NLEEKQTKAE LRCQDILDSD ISDATVILFW FTDENITNQM LKKFEELKSD TRIITIWGPL PDCIPDKVDF PYIVNKVPFT KAKNMQEQLL AVFGVKCVDF VTAWEFAERY TKAIGSPEIK NDRFLTIIQT LVIWINAKKL GVACGEEIPE SIQTYIKLMK MNFDIDFEPM LKE // ID A9A3B0_NITMS Unreviewed; 83 AA. AC A9A3B0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 30. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12539.1}; GN OrderedLocusNames=Nmar_0643 {ECO:0000313|EMBL:ABX12539.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12539.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12539.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12539.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12539.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12539; ABX12539; Nmar_0643. DR KEGG; nmr:Nmar_0643; -. DR eggNOG; arCOG08668; Archaea. DR eggNOG; ENOG411114H; LUCA. DR HOGENOM; HOG000106115; -. DR OMA; TEKLYHC; -. DR BioCyc; NMAR436308:GI3J-668-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 83 AA; 9881 MW; 8A82F960F7206B7D CRC64; MDDYPVSVDE NGVKIKPEKM ETEKLYHCIF KEKAMLVFKD SQDVMNCYEI EEKDLVEKIK KINNDDDLEK LFDEYLKGQD LNN // ID A9A4Q0_NITMS Unreviewed; 160 AA. AC A9A4Q0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Iron (Metal) dependent repressor, DtxR family {ECO:0000313|EMBL:ABX13028.1}; GN OrderedLocusNames=Nmar_1132 {ECO:0000313|EMBL:ABX13028.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13028.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13028.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13028.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13028.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4Q0; -. DR STRING; 436308.Nmar_1132; -. DR EnsemblBacteria; ABX13028; ABX13028; Nmar_1132. DR KEGG; nmr:Nmar_1132; -. DR eggNOG; arCOG02100; Archaea. DR eggNOG; COG1321; LUCA. DR HOGENOM; HOG000040349; -. DR OMA; PSSAQKM; -. DR BioCyc; NMAR436308:GI3J-1164-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0046914; F:transition metal ion binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR Gene3D; 1.10.60.10; -; 1. DR InterPro; IPR001367; Fe_dep_repressor. DR InterPro; IPR022687; HTH_DTXR. DR InterPro; IPR022689; Iron_dep_repressor. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF02742; Fe_dep_repr_C; 1. DR Pfam; PF01325; Fe_dep_repress; 1. DR SMART; SM00529; HTH_DTXR; 1. DR SUPFAM; SSF46785; SSF46785; 1. DR SUPFAM; SSF47979; SSF47979; 1. DR PROSITE; PS50944; HTH_DTXR; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 30 91 HTH dtxR-type DNA-binding. FT {ECO:0000259|PROSITE:PS50944}. SQ SEQUENCE 160 AA; 18240 MW; 01A90AA5FC4868F9 CRC64; MTGKQKEKPS VKKEKRLESI KKAHSQKNSF TTTMEDYLEV IYELVELKGH ASPTDISNYM GVRPPSVTKM LQKLDSAGCL EYAKYRGIKL TAKGISIAND IRQKHSELLN FFEIIGVDRS IANKDAEGIE HHINPKTMKQ LRKFTTFLKS NPDLLVLFNK // ID A9A4U9_NITMS Unreviewed; 110 AA. AC A9A4U9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13403.1}; GN OrderedLocusNames=Nmar_1507 {ECO:0000313|EMBL:ABX13403.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13403.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13403.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13403.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13403.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1507; -. DR EnsemblBacteria; ABX13403; ABX13403; Nmar_1507. DR KEGG; nmr:Nmar_1507; -. DR eggNOG; arCOG10587; Archaea. DR eggNOG; ENOG41111HS; LUCA. DR BioCyc; NMAR436308:GI3J-1549-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 77 97 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 110 AA; 11086 MW; F7AC61E8AF498F9B CRC64; MNTKVLLTAT MLSVFFFGAI GAASVAFAQY MGNVGDAGET GSYTLEEALE IQRRRIEAAE ANPSSGSGTP YLDASGVVGA AVIAGAVFGG IAGAFLIRGR SGKYAAMGRG // ID A9A5Y5_NITMS Unreviewed; 271 AA. AC A9A5Y5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Prephenate dehydratase {ECO:0000313|EMBL:ABX13463.1}; DE EC=4.2.1.51 {ECO:0000313|EMBL:ABX13463.1}; GN OrderedLocusNames=Nmar_1567 {ECO:0000313|EMBL:ABX13463.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13463.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13463.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13463.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13463.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5Y5; -. DR STRING; 436308.Nmar_1567; -. DR EnsemblBacteria; ABX13463; ABX13463; Nmar_1567. DR KEGG; nmr:Nmar_1567; -. DR eggNOG; arCOG00255; Archaea. DR eggNOG; COG0077; LUCA. DR HOGENOM; HOG000018970; -. DR KO; K04518; -. DR OMA; MTSIETR; -. DR BioCyc; NMAR436308:GI3J-1611-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016597; F:amino acid binding; IEA:InterPro. DR GO; GO:0004664; F:prephenate dehydratase activity; IEA:UniProtKB-EC. DR GO; GO:0009094; P:L-phenylalanine biosynthetic process; IEA:InterPro. DR InterPro; IPR002912; ACT_dom. DR InterPro; IPR001086; Preph_deHydtase. DR InterPro; IPR018528; Preph_deHydtase_CS. DR Pfam; PF00800; PDT; 1. DR PROSITE; PS51671; ACT; 1. DR PROSITE; PS00857; PREPHENATE_DEHYDR_1; 1. DR PROSITE; PS00858; PREPHENATE_DEHYDR_2; 1. DR PROSITE; PS51171; PREPHENATE_DEHYDR_3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000313|EMBL:ABX13463.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 177 Prephenate dehydratase. FT {ECO:0000259|PROSITE:PS51171}. FT DOMAIN 189 266 ACT. {ECO:0000259|PROSITE:PS51671}. SQ SEQUENCE 271 AA; 30595 MW; E2FA7B5A5B66DC14 CRC64; MINVSFQGER GAYSEAAARS FFEEDIETVP FATFAEVLEN TSKEKTEYSV LPVENSLEGS VGESYDLLYS TSLNATGEIY HRIEHCLIGI GEINEVDTVY SHPQALGQCR KFIEEHKMKT IPAYDTAGSV KIIKELNKKN CACIASKTAS TIYDVPVIAE NIANNLNNYT RFLILSKKES TITGNDKTSI IFSIKHEPGS LYRIIENFHK NNVNLTKIES RPTRSNTWEY NFYVDFEGHQ KDSKISEMLE KIKQDTLFLK VLGSYPSAKL S // ID A9A363_NITMS Unreviewed; 138 AA. AC A9A363; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=Cyclase/dehydrase {ECO:0000313|EMBL:ABX12492.1}; GN OrderedLocusNames=Nmar_0596 {ECO:0000313|EMBL:ABX12492.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12492.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12492.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12492.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12492.1; -; Genomic_DNA. DR ProteinModelPortal; A9A363; -. DR STRING; 436308.Nmar_0596; -. DR EnsemblBacteria; ABX12492; ABX12492; Nmar_0596. DR KEGG; nmr:Nmar_0596; -. DR eggNOG; arCOG05400; Archaea. DR eggNOG; ENOG41124WR; LUCA. DR HOGENOM; HOG000108269; -. DR OMA; DNEPKFW; -. DR BioCyc; NMAR436308:GI3J-619-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.530.20; -; 1. DR InterPro; IPR019587; Polyketide_cyclase/dehydratase. DR InterPro; IPR023393; START-like_dom. DR Pfam; PF10604; Polyketide_cyc2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 138 AA; 15767 MW; 39808A0CAFAA9419 CRC64; MATIEVKVKI NAPVEKVWTV VSDIDNEPKF WKGTKEVRNI SKNENTINRE ITIAFRDQKC MQEVTIDPMK QIHAKFTKGI INGEKIVSVI PEGDETTLQT VWDVKLTGMM SMFTGMIKNH IKSGTEQAMQ SIKEEIER // ID A9A2S6_NITMS Unreviewed; 193 AA. AC A9A2S6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=Probable thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; DE EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165}; DE AltName: Full=dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; GN Name=tmk {ECO:0000256|HAMAP-Rule:MF_00165}; GN OrderedLocusNames=Nmar_1707 {ECO:0000313|EMBL:ABX13603.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13603.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13603.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13603.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + dTMP = ADP + dTDP. {ECO:0000256|HAMAP- CC Rule:MF_00165}. CC -!- SIMILARITY: Belongs to the thymidylate kinase family. CC {ECO:0000256|HAMAP-Rule:MF_00165}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13603.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2S6; -. DR STRING; 436308.Nmar_1707; -. DR EnsemblBacteria; ABX13603; ABX13603; Nmar_1707. DR KEGG; nmr:Nmar_1707; -. DR eggNOG; arCOG01891; Archaea. DR eggNOG; COG0125; LUCA. DR KO; K00943; -. DR OMA; DETLNWK; -. DR BioCyc; NMAR436308:GI3J-1752-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004798; F:thymidylate kinase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006233; P:dTDP biosynthetic process; IEA:InterPro. DR GO; GO:0006235; P:dTTP biosynthetic process; IEA:UniProtKB-HAMAP. DR Gene3D; 3.40.50.300; -; 1. DR HAMAP; MF_00165; Thymidylate_kinase; 1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR018094; Thymidylate_kinase. DR SUPFAM; SSF52540; SSF52540; 1. DR TIGRFAMs; TIGR00041; DTMP_kinase; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00165}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Kinase {ECO:0000256|HAMAP-Rule:MF_00165, ECO:0000313|EMBL:ABX13603.1}; KW Nucleotide biosynthesis {ECO:0000256|HAMAP-Rule:MF_00165}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00165}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00165, KW ECO:0000313|EMBL:ABX13603.1}. SQ SEQUENCE 193 AA; 22710 MW; 066D467B51482A04 CRC64; MIIVIEGGDQ AGKLTQSTML EKALKKRKIK TKLFHFPDYK THIGKEIRQY LDGKRKFPPQ VIHCLLSANR WEKLEQIKTA QEKNSVLIMN RYYHSNLVYG LANGMKEKWL ESLDAGLPKA DLVILLDVTQ KESFNRQKTN RDKFEKNEEF LRKISRIYKT TAKKKRWKII DATKSKQEVH EEIMKTFSKK IGL // ID A9A205_NITMS Unreviewed; 225 AA. AC A9A205; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 37. DE SubName: Full=Chromosome segregation and condensation protein ScpA {ECO:0000313|EMBL:ABX12418.1}; GN OrderedLocusNames=Nmar_0522 {ECO:0000313|EMBL:ABX12418.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12418.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12418.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12418.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12418.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0522; -. DR EnsemblBacteria; ABX12418; ABX12418; Nmar_0522. DR KEGG; nmr:Nmar_0522; -. DR eggNOG; arCOG02610; Archaea. DR eggNOG; COG1354; LUCA. DR HOGENOM; HOG000108937; -. DR KO; K05896; -. DR OMA; RHESTYP; -. DR BioCyc; NMAR436308:GI3J-543-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 225 AA; 25538 MW; 0ED4FAE789FE8A2B CRC64; MSESPTPNSI SQEPVNILFS PQSVVKKDVW EIDLIQILNL LIKILEKSGK KDLKVAGMAA LSSSLIYRMK VESIFALQRA AMQKKPMHQR TDVDIDLIDM PYRHESTYPV SLDDLLGLLQ NLIGTIANPQ SRRNRQVEIE PIEAPDFQEY FISLESIIGK YEDLVMKKIA NTGHGLLQDI IAELDPVDSI RCFFAILFLA RDQKVDLEQV EDDIKITAIK EELTN // ID A9A563_NITMS Unreviewed; 217 AA. AC A9A563; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ABX12262.1}; GN OrderedLocusNames=Nmar_0366 {ECO:0000313|EMBL:ABX12262.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12262.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12262.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12262.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12262.1; -; Genomic_DNA. DR ProteinModelPortal; A9A563; -. DR STRING; 436308.Nmar_0366; -. DR EnsemblBacteria; ABX12262; ABX12262; Nmar_0366. DR KEGG; nmr:Nmar_0366; -. DR eggNOG; arCOG00905; Archaea. DR eggNOG; COG1573; LUCA. DR HOGENOM; HOG000196499; -. DR OMA; HPSAQNT; -. DR BioCyc; NMAR436308:GI3J-382-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.470.10; -; 1. DR InterPro; IPR005122; Uracil-DNA_glycosylase-like. DR Pfam; PF03167; UDG; 1. DR SMART; SM00986; UDG; 1. DR SUPFAM; SSF52141; SSF52141; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 45 209 UDG. {ECO:0000259|SMART:SM00986}. SQ SEQUENCE 217 AA; 24425 MW; 381E1F8687DBFD68 CRC64; MKIETLNKKI KSCQRCTRLS AYIRDVAKNK VRRFKDETYY GRPLSGFGDI NAKLLIVGLA PAAHGGNRTG RMFTGDSSGD WLAKVMHKTG FANIPTSQTS DDGLTLNNAY ITAAVRCAPP QNKPTKEEMQ NCFSFLEQEL QILNNVTTIL CLGKIAYDAT CKLLDVKPGK FGHNQVFKYN EMQVITSYHP SKQNTQTGRL LWKDWHAVFK RAKKLCT // ID A9A603_NITMS Unreviewed; 359 AA. AC A9A603; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Aminotransferase class I and II {ECO:0000313|EMBL:ABX13481.1}; GN OrderedLocusNames=Nmar_1585 {ECO:0000313|EMBL:ABX13481.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13481.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13481.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13481.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13481.1; -; Genomic_DNA. DR ProteinModelPortal; A9A603; -. DR STRING; 436308.Nmar_1585; -. DR EnsemblBacteria; ABX13481; ABX13481; Nmar_1585. DR KEGG; nmr:Nmar_1585; -. DR eggNOG; arCOG04273; Archaea. DR eggNOG; COG0079; LUCA. DR HOGENOM; HOG000288511; -. DR KO; K04720; -. DR OMA; WSINAYA; -. DR BioCyc; NMAR436308:GI3J-1629-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 1. DR InterPro; IPR004839; Aminotransferase_I/II. DR InterPro; IPR005860; CobD. DR InterPro; IPR004838; NHTrfase_class1_PyrdxlP-BS. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR Pfam; PF00155; Aminotran_1_2; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR01140; L_thr_O3P_dcar; 1. DR PROSITE; PS00105; AA_TRANSFER_CLASS_1; 1. PE 4: Predicted; KW Aminotransferase {ECO:0000313|EMBL:ABX13481.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13481.1}. FT DOMAIN 29 354 Aminotran_1_2. FT {ECO:0000259|Pfam:PF00155}. SQ SEQUENCE 359 AA; 40046 MW; C2714D83DAC204CA CRC64; MKIRTKTSIT KHHPISHGGR FSGGNQQSDV IDFSSNTSPA GMPSTVKSTM KKRLDGMEHY PDADSLSLLS SLKKYTGFSD SHIVVGNGAI EILYNFCTAF LSKKHVLIPT PTFSEYESAS KLVDCKFTFF KTMNLSKNID SFISKIPKNG CVFVCNPNNP TGNIISKKQL TKIISAAKNK SSFVFVDECF IELVPESNQS VINLVKKYDN LFVLRSLTKS FGLAGIRIGY GIGSKTIIDI LKKIKIPWSV NALAQEAGMI AIKNKSHLTK SKSIIKKESN FLKKKIARIP GFECHDSSTN FILIKTKYDS TKLQKKLLKH KILIRDCKNF RGLDNHYIRI AIKSHKDNLK LVTAMEAIA // ID A9A328_NITMS Unreviewed; 114 AA. AC A9A328; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12156.1}; GN OrderedLocusNames=Nmar_0260 {ECO:0000313|EMBL:ABX12156.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12156.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12156.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12156.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12156.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0260; -. DR EnsemblBacteria; ABX12156; ABX12156; Nmar_0260. DR KEGG; nmr:Nmar_0260; -. DR eggNOG; arCOG04162; Archaea. DR eggNOG; ENOG410Y5DW; LUCA. DR HOGENOM; HOG000109807; -. DR KO; K00242; -. DR OMA; TIMKIHY; -. DR BioCyc; NMAR436308:GI3J-268-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016627; F:oxidoreductase activity, acting on the CH-CH group of donors; IEA:InterPro. DR InterPro; IPR000701; Succ_DH_Fumarate_Rdtase_TM-su. DR Pfam; PF01127; Sdh_cyt; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 51 74 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 86 107 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 114 AA; 12739 MW; 17654BEA05D06BDD CRC64; MRESTIMKIH YGTALAAVAL VAVHILMRMT MNFADSLEYE TVLANYKFIP YAIMLELILV LLSVHGFNGL RVILLELKQG RVYEKAVSYG CLAAMFALIA YGSRTIIMTN MGMV // ID A9A352_NITMS Unreviewed; 115 AA. AC A9A352; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12481.1}; GN OrderedLocusNames=Nmar_0585 {ECO:0000313|EMBL:ABX12481.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12481.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12481.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12481.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12481.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12481; ABX12481; Nmar_0585. DR KEGG; nmr:Nmar_0585; -. DR eggNOG; arCOG10530; Archaea. DR eggNOG; ENOG4111067; LUCA. DR BioCyc; NMAR436308:GI3J-608-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 13544 MW; ACAE1AEC154F130B CRC64; MMRARLTYVP LEVAEQFEDF IIKRDEEILG AVKARTRDYS TLSLLKLLYQ LRGNPMTFSE LYSKSKIRMK KSFLNYLHLC VDYNFVKKEA VGSNMIYTIT DKGHTMLSLF MQKNN // ID A9A377_NITMS Unreviewed; 730 AA. AC A9A377; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ABX12506.1}; GN OrderedLocusNames=Nmar_0610 {ECO:0000313|EMBL:ABX12506.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12506.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12506.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12506.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12506.1; -; Genomic_DNA. DR ProteinModelPortal; A9A377; -. DR STRING; 436308.Nmar_0610; -. DR REBASE; 16742; M.NmaSCMORF610P. DR EnsemblBacteria; ABX12506; ABX12506; Nmar_0610. DR KEGG; nmr:Nmar_0610; -. DR eggNOG; arCOG02626; Archaea. DR eggNOG; arCOG02632; Archaea. DR eggNOG; COG0286; LUCA. DR KO; K03427; -. DR OMA; INAATHR; -. DR BioCyc; NMAR436308:GI3J-634-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0006306; P:DNA methylation; IEA:InterPro. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR003356; DNA_methylase_A-5. DR InterPro; IPR029464; HSDR_N. DR InterPro; IPR000055; Restrct_endonuc_typeI_HsdS. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF13588; HSDR_N_2; 1. DR Pfam; PF01420; Methylase_S; 1. DR Pfam; PF02384; N6_Mtase; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 9 118 HSDR_N_2. {ECO:0000259|Pfam:PF13588}. FT DOMAIN 258 516 N6_Mtase. {ECO:0000259|Pfam:PF02384}. FT DOMAIN 544 709 Methylase_S. {ECO:0000259|Pfam:PF01420}. FT COILED 693 727 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 730 AA; 82403 MW; 28AAFC1B0E0BE178 CRC64; MGSIHQQTES EIRKKYISKL SIEYGFDEKN IRLDVPVQLG LKRFIADAII YQDDRPFVLV EIKTDLTLNF EQAKNTLEQM SSVLGNNFVI LTNGYYDICY EIEKSSKQIK FNEIPDIPAL SKDKRTKKNP PQLELNEPEP FFYGIFESLQ NDPRLLHVTE KEIVDDLHKI IGAKIFDEKN SGTSLFFARK NDSYLKIVSR LEELLHQINS KENNFIFDLD FKLPHDLISK IVFKLQKYSL TKSQLKNMPL GFSQGILSKS TGAYLTPDAI SEFMSHLFKI NSKMKVLDLA CGSGAFLVNA GKFGASVVGV DANRQIANIA KINCYLNGIK NASVICADSL GPLENLAKMS SGNIQTNSFD LVLTHPPFGL RLTKDYANFS MLTISGNRFM ESLFIERSWE LLKEGGKLII ILPEGITSNK STRKIREFIT TNFKVLGIIS LPDYAFFPYS SIKTTILVLE KLGPKIISNS YMIFTAYAKN LGYDKQGILA KESDFSKILE DFNKFLQTNK GSKFDQNLNS DLRLDENYFQ NTSDLGNQTN MCMLKDIADI TIGVKNSKLK KDTKYLLVKG QQIKDFEVDL SNASEVGVEF SIEKYLLQKG DIAITRSGTV GNVGLCNKDA NVIFSDNIIR IRINSDKIIS QYLASFLYSE LGQRQIRQCT TGSTIRGISL SNLEKIQIPL ISISKQHKIA NDLKKILDAK SELNHLIKNL ENSKTSLSKN VEKTIEELLN // ID A9A4X5_NITMS Unreviewed; 327 AA. AC A9A4X5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 49. DE SubName: Full=Putative metalloendopeptidase, glycoprotease family {ECO:0000313|EMBL:ABX13429.1}; DE EC=3.4.24.57 {ECO:0000313|EMBL:ABX13429.1}; GN OrderedLocusNames=Nmar_1533 {ECO:0000313|EMBL:ABX13429.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13429.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13429.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13429.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13429.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1533; -. DR EnsemblBacteria; ABX13429; ABX13429; Nmar_1533. DR KEGG; nmr:Nmar_1533; -. DR eggNOG; arCOG01183; Archaea. DR eggNOG; COG0533; LUCA. DR HOGENOM; HOG000109569; -. DR KO; K01409; -. DR OMA; VHHGIAH; -. DR BioCyc; NMAR436308:GI3J-1575-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008233; F:peptidase activity; IEA:UniProtKB-KW. DR InterPro; IPR000905; Gcp-like_dom. DR InterPro; IPR017861; KAE1/TsaD. DR InterPro; IPR017860; Peptidase_M22_CS. DR Pfam; PF00814; Peptidase_M22; 1. DR PRINTS; PR00789; OSIALOPTASE. DR TIGRFAMs; TIGR00329; gcp_kae1; 1. DR PROSITE; PS01016; GLYCOPROTEASE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13429.1}; KW Protease {ECO:0000313|EMBL:ABX13429.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 37 295 Peptidase_M22. FT {ECO:0000259|Pfam:PF00814}. SQ SEQUENCE 327 AA; 35428 MW; 12CE275758A3F282 CRC64; MLGLGIESTA HTFSCAVIEM KGKKGKILSD VRKIYRPADG EGIHPREASR HHIENSSLVL SECLDEANIK VNDLDIVSYA GGPGLGPCLR VGAVVARSLA SFYKIPIYPV NHALGHIELG KLLTGATNPL VLLVSGGHTM LLAFLNKQWR VFGETLDITL GQLLDQFGRS IGFASPCGKN IEELATTSSN YVTLPYSVKG NDVSFSGLLS ATKSVAKKSK VDACYSLQET AFAMIAEAVE RALSFTRKKE LMIVGGVAAN KRLSEMLQDV CKRHGAKFFV VPLKYAGDCG SQICWTGLLE SQIKKGVSLK DTFVTQSWRL DTVKVNY // ID A9A5U4_NITMS Unreviewed; 288 AA. AC A9A5U4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13099.1}; GN OrderedLocusNames=Nmar_1203 {ECO:0000313|EMBL:ABX13099.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13099.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13099.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13099.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13099.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1203; -. DR EnsemblBacteria; ABX13099; ABX13099; Nmar_1203. DR KEGG; nmr:Nmar_1203; -. DR eggNOG; arCOG10580; Archaea. DR eggNOG; ENOG41110MQ; LUCA. DR HOGENOM; HOG000023841; -. DR BioCyc; NMAR436308:GI3J-1236-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 288 AA; 33635 MW; F280037F604CE6DD CRC64; MSNNSENVAF YGNLYSYKLY TRPTALRMFG SKSYKKSKSS KHQENIQKML KILALNDPLT TWSMAKIQLF EDTEAVRVKE KEYRRMLVGR RDRGKKTPGL LDIGLVVNDG IRYTKGASNL YRLSLHGVLY CLDVLDMTEK EIDIMAQKYA KVLPFVFGRW NSLKSHLGSD VHRLKVLASG TFLDNIQISK ASNFPVYEIL TYLNVKYQDD FETISESDLA DQISCWYYTT FLLPSQLRSK KMSSVNTAKW KKIFERDLEL KDWYFGFVDE AEKFYKARFT TIRKLKKI // ID A9A622_NITMS Unreviewed; 348 AA. AC A9A622; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 47. DE SubName: Full=Phosphate uptake regulator, PhoU {ECO:0000313|EMBL:ABX13500.1}; GN OrderedLocusNames=Nmar_1604 {ECO:0000313|EMBL:ABX13500.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13500.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13500.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13500.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13500.1; -; Genomic_DNA. DR ProteinModelPortal; A9A622; -. DR STRING; 436308.Nmar_1604; -. DR EnsemblBacteria; ABX13500; ABX13500; Nmar_1604. DR KEGG; nmr:Nmar_1604; -. DR eggNOG; arCOG00318; Archaea. DR eggNOG; COG0704; LUCA. DR HOGENOM; HOG000109874; -. DR OMA; LIVQSMI; -. DR BioCyc; NMAR436308:GI3J-1648-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR InterPro; IPR026022; PhoU_dom. DR InterPro; IPR007159; SpoVT-AbrB_dom. DR Pfam; PF04014; MazE_antitoxin; 1. DR Pfam; PF01895; PhoU; 2. DR SMART; SM00966; SpoVT_AbrB; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 58 SpoVT-AbrB. {ECO:0000259|SMART:SM00966}. FT COILED 271 311 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 348 AA; 40052 MW; 5F83AB36DF454A52 CRC64; MEEREETRKI QFTGKSSYIV SLPKQWIMDL GLKQGDQIRM VRKGSSTLEL YPPKFESRSQ KKEEAIIEIN SEEKASSIVR KLISLYFLGF KTINVKPKDG RLSPIQRNTV KEAVKRMLMG SEIISDSTSG ITVQVLVNLL ELSVDGAFKR MIHLAKSMSS DALLAVKENN EDLAQEVINT DDEVDRFGFY IIRQLKIAIQ NEHMLKEMGF RNPRNCLGYR LVVKNIERTG DHAAFIAKDL LEFKKPVKKE ILQKLQDMNE FCLASLDEAC LALFKEDYAQ AERTIEKTND IAKFEKKVRE ASKSLKDDEE IYRVRRMTEN IRRISEYASD IAEIVLNMNI EKAIKKTA // ID A9A1X1_NITMS Unreviewed; 115 AA. AC A9A1X1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12092.1}; GN OrderedLocusNames=Nmar_0196 {ECO:0000313|EMBL:ABX12092.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12092.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12092.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12092.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12092.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12092; ABX12092; Nmar_0196. DR KEGG; nmr:Nmar_0196; -. DR eggNOG; arCOG05565; Archaea. DR eggNOG; ENOG4111ZU8; LUCA. DR HOGENOM; HOG000106137; -. DR OMA; HILYITT; -. DR BioCyc; NMAR436308:GI3J-200-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 12966 MW; E4CCBDC5548606E2 CRC64; MEIQNAVEKI LKVSPSVRVV SVCDLKGKLL YSARSKKVNL LVSKKQSVAS LKAAAKDWKQ RKKLMRSLGP CKYVVAEYDK VKRLVIPAGK NHILYITTTA SLDHNKVVRK VRSFK // ID A9A4I1_NITMS Unreviewed; 184 AA. AC A9A4I1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12959.1}; GN OrderedLocusNames=Nmar_1063 {ECO:0000313|EMBL:ABX12959.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12959.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12959.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12959.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12959.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1063; -. DR EnsemblBacteria; ABX12959; ABX12959; Nmar_1063. DR KEGG; nmr:Nmar_1063; -. DR BioCyc; NMAR436308:GI3J-1094-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 27 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 184 AA; 20670 MW; 297C093E163C0EA3 CRC64; MLTEVSFEAI GSIATAAATI VLVVLLYRTV KQFESTVEVS RIQTEYRFRP WIGHLGAIKK MDDSINGDCQ FSITVRNFGE LPASGVTAKF ALFSKLPSKD ELKTTDMSSF SLGPMLPGMD KQYWFFIPND KWKKAADGQE KIFTALYFDY AASGNKSGYG IISEYNADAK NFIHKEMWID DSKL // ID A9A1J0_NITMS Unreviewed; 287 AA. AC A9A1J0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13169.1}; GN OrderedLocusNames=Nmar_1273 {ECO:0000313|EMBL:ABX13169.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13169.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13169.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13169.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13169.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1J0; -. DR STRING; 436308.Nmar_1273; -. DR EnsemblBacteria; ABX13169; ABX13169; Nmar_1273. DR KEGG; nmr:Nmar_1273; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR HOGENOM; HOG000110039; -. DR OMA; QGYGIDE; -. DR BioCyc; NMAR436308:GI3J-1306-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR InterPro; IPR027560; PEFG-CTERM. DR SUPFAM; SSF49503; SSF49503; 1. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 259 279 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 287 AA; 30562 MW; DB96AC12E29A5FD2 CRC64; MKSKTVLLAI MTVVISTGSI NAFADHPQTE ISVAPGANLP GCETADECLV SSEVTVNVGG EVIWTNNAES NTTISSGNPD DGPDGMFDSG LLGPGESFTH TFDEPGEYSY FSMIHPWIQG VVIVQESGDH DEHSDEHGDE HSDEMMMPEG DATAMGMLSD GTMVSIWTSV PTAGEAMEIS IEFKDAEHVN HDIMVTQNGD EVLHDEGAHH HEGTGMHMTA PLSSADPVDI TITFQGYGID EKTGPIGEEV VFTNVVPEFG TIAMMILAVA IISIVAVTAK SRVVPRF // ID A9A2V7_NITMS Unreviewed; 153 AA. AC A9A2V7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13634.1}; GN OrderedLocusNames=Nmar_1738 {ECO:0000313|EMBL:ABX13634.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13634.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13634.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13634.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13634.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13634; ABX13634; Nmar_1738. DR KEGG; nmr:Nmar_1738; -. DR eggNOG; arCOG08776; Archaea. DR eggNOG; ENOG4111149; LUCA. DR BioCyc; NMAR436308:GI3J-1785-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 27 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 33 54 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 91 153 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 153 AA; 17317 MW; 2B562379F93C66F8 CRC64; MGYLGNHLAT VVTAVFAAIL TALWPYFVDF APILNFVFIM AVPIMWFLVF TCWISQKSTD YMHKHAHHSE KKSLSNAQTV QTTTTGTQVS LSEIKQVQTE LSSELNNLKE TVKLKDSEIE RLNQEISNLQ TLVQIESLKT ELANLKMLAS KKK // ID A9A4W3_NITMS Unreviewed; 193 AA. AC A9A4W3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13417.1}; GN OrderedLocusNames=Nmar_1521 {ECO:0000313|EMBL:ABX13417.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13417.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13417.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13417.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13417.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1521; -. DR EnsemblBacteria; ABX13417; ABX13417; Nmar_1521. DR KEGG; nmr:Nmar_1521; -. DR eggNOG; arCOG10589; Archaea. DR eggNOG; ENOG41110V6; LUCA. DR BioCyc; NMAR436308:GI3J-1563-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 193 AA; 22584 MW; A24B480190EF4FB4 CRC64; MANETSDLID NLYEKNEPAR NDFKPQVSRK SQKAKYQIFD ESEFTRGREV LGDLIVHGMI ASGGTDIDWL IEHKGGFVIL EFKGFHNDKI NIAKGQMIAY EKLHEKLNQS AKCYLYVVGC DDIDFSNPDA TVWVFEMNHW KSNAIPKNTS DIYGDESNRQ NKYIVYREYM EEISVEKLRD IIDSHWKEFE RIM // ID A9A2K2_NITMS Unreviewed; 431 AA. AC A9A2K2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 50. DE SubName: Full=Diaminobutyrate--2-oxoglutarate aminotransferase {ECO:0000313|EMBL:ABX13241.1}; GN OrderedLocusNames=Nmar_1345 {ECO:0000313|EMBL:ABX13241.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13241.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13241.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13241.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the class-III pyridoxal-phosphate-dependent CC aminotransferase family. {ECO:0000256|RuleBase:RU003560}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13241.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2K2; -. DR STRING; 436308.Nmar_1345; -. DR EnsemblBacteria; ABX13241; ABX13241; Nmar_1345. DR KEGG; nmr:Nmar_1345; -. DR eggNOG; arCOG00915; Archaea. DR eggNOG; COG0160; LUCA. DR HOGENOM; HOG000020206; -. DR KO; K00836; -. DR OMA; QGVWITD; -. DR BioCyc; NMAR436308:GI3J-1379-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0047307; F:diaminobutyrate-pyruvate transaminase activity; IEA:InterPro. DR GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro. DR GO; GO:0019491; P:ectoine biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.640.10; -; 1. DR Gene3D; 3.90.1150.10; -; 2. DR InterPro; IPR005814; Aminotrans_3. DR InterPro; IPR004637; Dat. DR InterPro; IPR012773; Ectoine_EctB. DR InterPro; IPR015424; PyrdxlP-dep_Trfase. DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major_sub1. DR InterPro; IPR015422; PyrdxlP-dep_Trfase_major_sub2. DR PANTHER; PTHR11986; PTHR11986; 1. DR Pfam; PF00202; Aminotran_3; 1. DR SUPFAM; SSF53383; SSF53383; 1. DR TIGRFAMs; TIGR00709; dat; 1. DR TIGRFAMs; TIGR02407; ectoine_ectB; 1. DR PROSITE; PS00600; AA_TRANSFER_CLASS_3; 1. PE 3: Inferred from homology; KW Aminotransferase {ECO:0000313|EMBL:ABX13241.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyridoxal phosphate {ECO:0000256|RuleBase:RU003560}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13241.1}. SQ SEQUENCE 431 AA; 47862 MW; E64111E6E7F70171 CRC64; MKQINTIESQ VRSYCRAYPV MFEKAKDHLL IDKDGKKYFD FLCGAGSLNY GHNNHILKKE IIDYLNEDGI THSLDLATRS KEDFLNSFSK YILEPRNLDY KLQFTGPTGT NAVEAAFKIA RKITGRTKII SFTNGFHGVT LGALAATGNS HHRGGSGIPL NDVVFMPYDG YMGKKLNTID YLRRLLEDNS SGVDLPAAVV LETVQGEGGI NIASSKWLQS LQELCKEFGI LVIVDDIQVG CGRTGSFFSF EGMGIEPDMI TLSKSLSGFG LPFSLLLLKP GIDKWEPGEH NGTFRGNNMA FVTAKTAIEQ YWANDDLEKQ IATKSNILKH RLEEISDEFP SSDIQVRGKG MVYGIDCILE DLASEIKQKC FENGLILETC GPDDQVVKLL PPLTISESNL TKGLDILEKS IKEVMQESDF DKKLTMVTVQ K // ID A9A3F8_NITMS Unreviewed; 281 AA. AC A9A3F8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 47. DE SubName: Full=Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABX12890.1}; GN OrderedLocusNames=Nmar_0994 {ECO:0000313|EMBL:ABX12890.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12890.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12890.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12890.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12890.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3F8; -. DR STRING; 436308.Nmar_0994; -. DR EnsemblBacteria; ABX12890; ABX12890; Nmar_0994. DR KEGG; nmr:Nmar_0994; -. DR eggNOG; arCOG01648; Archaea. DR eggNOG; COG0596; LUCA. DR HOGENOM; HOG000108568; -. DR OMA; ANIELPY; -. DR BioCyc; NMAR436308:GI3J-1022-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.1820; -; 1. DR InterPro; IPR029058; AB_hydrolase. DR InterPro; IPR000073; AB_hydrolase_1. DR Pfam; PF00561; Abhydrolase_1; 1. DR PRINTS; PR00111; ABHYDROLASE. DR SUPFAM; SSF53474; SSF53474; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12890.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 42 162 AB_hydrolase_1. FT {ECO:0000259|Pfam:PF00561}. SQ SEQUENCE 281 AA; 31246 MW; CC62314B3A02CF2E CRC64; MIAELTKTYL LMVIEAKLVN EKFLQIDGNK IRYLESGNSD KTLVLIHGLG ASAERWEQVM PIFAEHFRVV IPDLIGFGYS DKPLADYTID FFSDFLGKFM QTANIELPYL IGSSLGGQIS AEYTAANQND VDKLILVSPS GVMKQSTPAL DAYIMAALYP NEQNAKNAFE LMEGSGESVD PKIVSSFIER MQMPNAKLAF MSTILGLKNA EIITKKLQAI STQTMLIWGS VDPVIPINHA DDFIQSLSDC RFIRMDGCGH TPYVQAPRLF SEKVLDFLNV K // ID A9A460_NITMS Unreviewed; 1263 AA. AC A9A460; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 59. DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}; DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}; GN OrderedLocusNames=Nmar_0348 {ECO:0000313|EMBL:ABX12244.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12244.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12244.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12244.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription CC of DNA into RNA using the four ribonucleoside triphosphates as CC substrates. {ECO:0000256|RuleBase:RU004279}. CC -!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate CC + RNA(n+1). {ECO:0000256|RuleBase:RU004279}. CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family. CC {ECO:0000256|RuleBase:RU004279}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12244.1; -; Genomic_DNA. DR ProteinModelPortal; A9A460; -. DR STRING; 436308.Nmar_0348; -. DR EnsemblBacteria; ABX12244; ABX12244; Nmar_0348. DR KEGG; nmr:Nmar_0348; -. DR eggNOG; arCOG04257; Archaea. DR eggNOG; ENOG4102UA2; Archaea. DR eggNOG; COG0086; LUCA. DR HOGENOM; HOG000222974; -. DR KO; K03041; -. DR OMA; ITAPETY; -. DR BioCyc; NMAR436308:GI3J-363-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro. DR HAMAP; MF_00411; RNApol_arch_A; 1. DR InterPro; IPR000722; RNA_pol_asu. DR InterPro; IPR006592; RNA_pol_N. DR InterPro; IPR007080; RNA_pol_Rpb1_1. DR InterPro; IPR007066; RNA_pol_Rpb1_3. DR InterPro; IPR007083; RNA_pol_Rpb1_4. DR InterPro; IPR007081; RNA_pol_Rpb1_5. DR InterPro; IPR012758; RNAP_A1. DR InterPro; IPR012757; RNAP_A2. DR Pfam; PF04997; RNA_pol_Rpb1_1; 1. DR Pfam; PF00623; RNA_pol_Rpb1_2; 1. DR Pfam; PF04983; RNA_pol_Rpb1_3; 1. DR Pfam; PF05000; RNA_pol_Rpb1_4; 1. DR Pfam; PF04998; RNA_pol_Rpb1_5; 1. DR SMART; SM00663; RPOLA_N; 1. DR TIGRFAMs; TIGR02390; RNA_pol_rpoA1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279, KW ECO:0000313|EMBL:ABX12244.1}; KW Nucleotidyltransferase {ECO:0000256|RuleBase:RU004279}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|RuleBase:RU004279, KW ECO:0000313|EMBL:ABX12244.1}; KW Transferase {ECO:0000256|RuleBase:RU004279}. FT DOMAIN 208 513 RPOLA_N. {ECO:0000259|SMART:SM00663}. SQ SEQUENCE 1263 AA; 140175 MW; 6FB43FE34DC48D5A CRC64; MSIQAVKAID GIRFSVWSPT EIRKYSVAEI TAPETYDEDG MPVQGGLMDG RLGTLEPGQK CLTCGNTAAR CPGHFGHLEL AEPVLHIAFI DNIYKLLQST CRSCARLKVP QEDLNVFKTI KEKHAAYTVI SQKRIPEQII EKAKKAKECP HCGKTQYELI FTKPTIFVEK TEIGEHRLLP ITIRERFSQI IDEDLELLSY DPVTARPEWF VLQAFPVPPV TVRPSIILET GIRSEDDLTH KMVDIIRVNQ RLKESKDAGT PPLIVQDLVD LLQYHTTTYF DNEVSGIPQA HHRSGRPLKT LTQRLKGKEG RFRGSLSGKR VDFSSRTVIS PDPNLDLSEV GVPEAVAMKL TIPEIVTEWN IERMRKLVIN GPEKFPGVNY IVRPDGVKIR LDFVEDRSTI AETLEIGYLV ERHLADGDIV MFNRQPSLHQ MSIMAHYVRV LPGKTFRLHP SVCPPYNADF DGDEMNLHVP QSEEARAEAI LLMRVQDQLI SPRYGGPIIG ALRDFVTGAY LLTKDDTVLT VQEFSNLAML GGYTDPLPKP GTKTKDGPAY TGKQLFSLFL PKDFNYVITS KWSKGTKGQA KDVVIKNGEL ISGVIDKSSI GAEEPESVLH RIAKDYGNAV GKSFLNSILI MVKQFITHYG FSYGYGDLIV PDKDKQQILD DIQGTYDIVS DLTDQYKKGT LKLTRGMKPE EALEAYIVNE LGKARDKAGS SANDCLPADN AGKIMATTGA RGSSLNVGQM AGALGQQSRR GNRLHEGYNN RALTHYQEHD DNPDAHGFVK SNYREGLSAL EFFFHAMGGR EGLVDTAVRT QQSGYMQRRL INALEHIRLE YDGTVRDPHG HIVQFLYGED GIDVQKSDHG EAFNPSRLIE SQKIIDSGKK ATKEEIETLA KKYTKTFNPR LTKLVTDALQ NSELSKDGVE AVCKKGLLLY NKAKVEPGQA VGIITAQSIG EPGTQMTLRT FHFAGIKERN VTLGLPRLIE LVDARKKPVT PTMDIYLDDE SKKSREKAIE VARNVLQTKV SALIADSETD YATEIKLILS ENRLRERGCS IAEVEAALSS NKKFKMETTG ELITLKLVEE SDTATVIAIR NKVLNTTVKG VPDIERVTLV QKDDEWVIQT TGSNVAKVLE VKGIDKRNVR TNNVFEIAGT LGIEAARNAL INELNSTLED QGLEVDNRYI MLVADLMCSR GYMQQIGRHG IAGTKDSVLA RAAFEITVPT IAHAALGGEI EQLKGITENV IVGSNIPIGS GTVDLYMQVS KKK // ID A9A3P3_NITMS Unreviewed; 190 AA. AC A9A3P3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=KH type 1 domain protein {ECO:0000313|EMBL:ABX13305.1}; GN OrderedLocusNames=Nmar_1409 {ECO:0000313|EMBL:ABX13305.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13305.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13305.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13305.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13305.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3P3; -. DR STRING; 436308.Nmar_1409; -. DR EnsemblBacteria; ABX13305; ABX13305; Nmar_1409. DR KEGG; nmr:Nmar_1409; -. DR eggNOG; arCOG04150; Archaea. DR eggNOG; COG1094; LUCA. DR HOGENOM; HOG000223698; -. DR KO; K06961; -. DR OMA; HVKIPQD; -. DR BioCyc; NMAR436308:GI3J-1444-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR Gene3D; 3.30.1370.10; -; 2. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR004088; KH_dom_type_1. DR InterPro; IPR019964; KH_domain_protein_archaea. DR Pfam; PF00013; KH_1; 2. DR SMART; SM00322; KH; 2. DR SUPFAM; SSF54791; SSF54791; 2. DR TIGRFAMs; TIGR03665; arCOG04150; 1. DR PROSITE; PS50084; KH_TYPE_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 65 KH. {ECO:0000259|PROSITE:PS50084}. SQ SEQUENCE 190 AA; 20920 MW; 4EE1CE1F2AFF6C46 CRC64; MSFEKLLRIP NDRIAVLIGK SGNIKSKIEK SCHVSLDIDG ETGEVLIKSD GDVEKIQPFK AMEIVTAIGR GFSPENAMTL LKGENTLHVI DLREFAGKSN ANVERIKGRI IGEGGRARRN MENLSSTHIS VYGKTVSIIG DASKLRLAVD AISSISSGSM HGAVYDKLEA ANRKEKQEKM KLWEDQDVFY // ID A9A5D1_NITMS Unreviewed; 70 AA. AC A9A5D1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12330.1}; GN OrderedLocusNames=Nmar_0434 {ECO:0000313|EMBL:ABX12330.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12330.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12330.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12330.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12330.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5D1; -. DR STRING; 436308.Nmar_0434; -. DR EnsemblBacteria; ABX12330; ABX12330; Nmar_0434. DR KEGG; nmr:Nmar_0434; -. DR eggNOG; arCOG04208; Archaea. DR eggNOG; COG1997; LUCA. DR HOGENOM; HOG000229493; -. DR KO; K02921; -. DR OMA; PECGSAK; -. DR BioCyc; NMAR436308:GI3J-452-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:InterPro. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:InterPro. DR Gene3D; 2.20.25.30; -; 1. DR HAMAP; MF_00327; Ribosomal_L37Ae; 1. DR InterPro; IPR002674; Ribosomal_L37ae. DR InterPro; IPR011331; Ribosomal_L37ae/L37e. DR InterPro; IPR011332; Ribosomal_zn-bd. DR Pfam; PF01780; Ribosomal_L37ae; 1. DR SUPFAM; SSF57829; SSF57829; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 70 AA; 7780 MW; AFA4367E18D6E118 CRC64; MAKGKKSLKG LGARYGIKIR KQYTKIHLQL KEKRACPECG SKTFGRDAVG IWSCKKCSFK IAGTAYDVKV // ID A9A1C2_NITMS Unreviewed; 124 AA. AC A9A1C2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12757.1}; GN OrderedLocusNames=Nmar_0861 {ECO:0000313|EMBL:ABX12757.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12757.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12757.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12757.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12757.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0861; -. DR EnsemblBacteria; ABX12757; ABX12757; Nmar_0861. DR KEGG; nmr:Nmar_0861; -. DR eggNOG; arCOG10555; Archaea. DR eggNOG; ENOG411109X; LUCA. DR BioCyc; NMAR436308:GI3J-889-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 124 AA; 14557 MW; 644613145FD7F172 CRC64; MSKYLIVIKT ILPQKIVIEC WAKKSMPLTN NVIIKLNEIT TLVEDKSKLS ESEVEEIKSI FKELVKNGER YDVDEIEFWF ENEGSWKTRE PRIRIANLSN YIQDKHQQTA HLRIMSDDDC SCGH // ID A9A2D7_NITMS Unreviewed; 185 AA. AC A9A2D7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABX12848.1}; GN OrderedLocusNames=Nmar_0952 {ECO:0000313|EMBL:ABX12848.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12848.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12848.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12848.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12848.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2D7; -. DR STRING; 436308.Nmar_0952; -. DR EnsemblBacteria; ABX12848; ABX12848; Nmar_0952. DR KEGG; nmr:Nmar_0952; -. DR eggNOG; arCOG00608; Archaea. DR eggNOG; COG3620; LUCA. DR HOGENOM; HOG000106461; -. DR OMA; MINQIES; -. DR BioCyc; NMAR436308:GI3J-980-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR Gene3D; 1.10.260.40; -; 1. DR InterPro; IPR000644; CBS_dom. DR InterPro; IPR001387; Cro/C1-type_HTH. DR InterPro; IPR010982; Lambda_DNA-bd_dom. DR InterPro; IPR017158; Tscrpt-reg_CBS-contain_prd. DR Pfam; PF00571; CBS; 1. DR Pfam; PF01381; HTH_3; 1. DR PIRSF; PIRSF037253; HTH_CBS_prd; 1. DR SMART; SM00116; CBS; 1. DR SMART; SM00530; HTH_XRE; 1. DR SUPFAM; SSF47413; SSF47413; 1. DR PROSITE; PS51371; CBS; 1. DR PROSITE; PS50943; HTH_CROC1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 8 61 HTH cro/C1-type DNA-binding. FT {ECO:0000259|PROSITE:PS50943}. FT DOMAIN 71 127 CBS. {ECO:0000259|PROSITE:PS51371}. SQ SEQUENCE 185 AA; 20326 MW; A4185B544D177FE0 CRC64; MLPNVESIKQ MRQKLGITQK KLASMTGVST SMINQIESGR SQPSYETAKK IFENLSNLES RSSSHKAGDF CSQDIVKLKP SNTLHDAIKK MHQLSISQIP VFEGKEIVGV VSEDGIVKHL ADVGEAELKN AKLADTMDPV PPIVDFETPA NVLVPLIRYS KCILVTKKSK IMGIITASDT LKMME // ID A9A611_NITMS Unreviewed; 227 AA. AC A9A611; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13489.1}; GN OrderedLocusNames=Nmar_1593 {ECO:0000313|EMBL:ABX13489.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13489.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13489.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13489.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13489.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1593; -. DR EnsemblBacteria; ABX13489; ABX13489; Nmar_1593. DR KEGG; nmr:Nmar_1593; -. DR eggNOG; arCOG10593; Archaea. DR eggNOG; ENOG41110V4; LUCA. DR BioCyc; NMAR436308:GI3J-1637-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 227 AA; 26826 MW; E7A548055C86C939 CRC64; MNIEKIIDDC KIYLKQIKQY DPDPFYVNHF FSKFIDSVNM VMGGIFDEAN RDFGLFITEK ISYEKFLKKA KEKNDEKAIK FLEWYSNKIN QEHKSKFPKV IKKICELKNK EDALPEIKIM IRAQDRYEKD INQQIIVGLS NEKLRSKEEL QIEINRQLPV FLEVINHKRT KNNEPNVNEN QVTTSAFIDI GDISEVEVAY AAEIYIPVLI RLVEESRKKI KELTSWS // ID A9A5F4_NITMS Unreviewed; 86 AA. AC A9A5F4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 24. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12665.1}; GN OrderedLocusNames=Nmar_0769 {ECO:0000313|EMBL:ABX12665.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12665.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12665.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12665.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12665.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12665; ABX12665; Nmar_0769. DR KEGG; nmr:Nmar_0769; -. DR eggNOG; ENOG4102U9K; Archaea. DR eggNOG; ENOG4110ZK7; LUCA. DR BioCyc; NMAR436308:GI3J-795-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 86 AA; 10086 MW; 8991A88E6D4B9D4E CRC64; MSRTIFVKEI ITILNEPKLC PTCEKEDRLE RDIIREERSD GKTILCTRCE ALIVVTNLNL RQVELSSRKD DTIMLKEPHL IRKVAY // ID A9A5V0_NITMS Unreviewed; 174 AA. AC A9A5V0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13105.1}; GN OrderedLocusNames=Nmar_1209 {ECO:0000313|EMBL:ABX13105.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13105.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13105.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13105.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13105.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13105; ABX13105; Nmar_1209. DR KEGG; nmr:Nmar_1209; -. DR BioCyc; NMAR436308:GI3J-1242-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 174 AA; 19304 MW; 920DA0A1A8B58B81 CRC64; MTKKQTVIMT MLPALAMMLL ITPTVEQSYA QVQKSTHPDV QRLSPSSFGI KTADRVCGDK LCSEIREPVI NIEEEDTIQE VTEELDHMPD LDLLNIIKYR KNSVDPVSHV LIYKITGGTL NLADIAIEAS SDINEVKYNV TALSAEKSTT NVVRIMALDP DSINVQVVGY TLKQ // ID A9A5A7_NITMS Unreviewed; 93 AA. AC A9A5A7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12306.1}; GN OrderedLocusNames=Nmar_0410 {ECO:0000313|EMBL:ABX12306.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12306.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12306.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12306.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12306.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0410; -. DR EnsemblBacteria; ABX12306; ABX12306; Nmar_0410. DR KEGG; nmr:Nmar_0410; -. DR eggNOG; arCOG08666; Archaea. DR eggNOG; ENOG411107F; LUCA. DR HOGENOM; HOG000105859; -. DR OMA; RCSIREE; -. DR BioCyc; NMAR436308:GI3J-428-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 93 AA; 10187 MW; 693941CF0782E80B CRC64; MLPDKCSVSK EGKQCPSPPE FIVSIVDGKD EYMVGVTCGR HKQVVSGKIE FMQKEGKIHE GTVSFSPVKA VGTDCIHGGE DDFIQIDMNR SKN // ID A9A2H0_NITMS Unreviewed; 127 AA. AC A9A2H0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 50. DE SubName: Full=Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABX13209.1}; GN OrderedLocusNames=Nmar_1313 {ECO:0000313|EMBL:ABX13209.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13209.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13209.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13209.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13209.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1313; -. DR EnsemblBacteria; ABX13209; ABX13209; Nmar_1313. DR KEGG; nmr:Nmar_1313; -. DR eggNOG; arCOG00731; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000246060; -. DR OMA; VALWLED; -. DR BioCyc; NMAR436308:GI3J-1346-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR001845; HTH_ArsR_DNA-bd_dom. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR Pfam; PF01022; HTH_5; 1. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 43 87 HTH arsR-type DNA-binding. FT {ECO:0000259|Pfam:PF01022}. SQ SEQUENCE 127 AA; 15147 MW; CECF3952D6F6DF06 CRC64; MTNQLLEFKE ILRSRQESEQ RKPDKQTRKL LFYLFTSTRG GFTRLRIIMS LLDKPYNTHQ LSQELELDYK AVQHHMKVLE KNNMVSKIGE KYGAIFHLSN FLEMNISALD EAIDKLDRKM NHKKVYI // ID A9A5P3_NITMS Unreviewed; 89 AA. AC A9A5P3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13048.1}; GN OrderedLocusNames=Nmar_1152 {ECO:0000313|EMBL:ABX13048.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13048.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13048.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13048.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13048.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1152; -. DR EnsemblBacteria; ABX13048; ABX13048; Nmar_1152. DR KEGG; nmr:Nmar_1152; -. DR eggNOG; arCOG03067; Archaea. DR eggNOG; COG0640; LUCA. DR HOGENOM; HOG000108357; -. DR BioCyc; NMAR436308:GI3J-1184-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.10.10; -; 1. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 89 AA; 10380 MW; 3DF88F67230FEE60 CRC64; MESRHILFSI IKKPKTTQEI SKELKIPMSS VYKKIHSLKE CSLILEKSDF AKTGHVNRLY QSLIRDVKIS IKEFEPKITF SKNTSIKNE // ID A9A5W7_NITMS Unreviewed; 358 AA. AC A9A5W7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX13122.1}; GN OrderedLocusNames=Nmar_1226 {ECO:0000313|EMBL:ABX13122.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13122.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13122.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13122.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13122.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5W7; -. DR STRING; 436308.Nmar_1226; -. DR EnsemblBacteria; ABX13122; ABX13122; Nmar_1226. DR KEGG; nmr:Nmar_1226; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; arCOG02929; Archaea. DR eggNOG; COG3794; LUCA. DR HOGENOM; HOG000106665; -. DR OMA; TFIDGMH; -. DR BioCyc; NMAR436308:GI3J-1259-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 2. DR InterPro; IPR002386; Amicyanin/Pseudoazurin. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR PRINTS; PR00155; AMICYANIN. DR SUPFAM; SSF49503; SSF49503; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 32 50 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 62 79 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 85 109 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 121 139 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 276 358 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 358 AA; 37946 MW; 10E3B876500F9359 CRC64; MMPGMGLTSI GLAGVVISYS NIAHTFIDGM HALTGLTMFV GLIFLAAGIL DGGVSTSNRA KATVLVIASI SLGFGMFAFT MNTSAYTVTI AGILMAVAFP AIIIAYLAMK HPQYLKPVGS IVGMASAAGI IAWIAFGFVS PDQYMIPQEV EVEEPSAEEV APTGPVTTIE MLEGSAEEGN PDYAPDAAVV QQGHVVEWVN VDSAAHTATS SADFGETFDT GLLGPGESFT LDTTNLEIGE YEYFCIVHPW MVATLTIEGA KEPIKVVMPE GAALPEEGQI YYDPEVITVS VGDTVLWDNA DTTVHTVTSG VPPTDTTGVF DSEMMMAGDS FEFTFTEAGT YDYYCTFHPW MVGTVNVE // ID A9A5J7_NITMS Unreviewed; 138 AA. AC A9A5J7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12708.1}; GN OrderedLocusNames=Nmar_0812 {ECO:0000313|EMBL:ABX12708.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12708.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12708.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12708.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12708.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5J7; -. DR STRING; 436308.Nmar_0812; -. DR EnsemblBacteria; ABX12708; ABX12708; Nmar_0812. DR KEGG; nmr:Nmar_0812; -. DR eggNOG; arCOG04171; Archaea. DR eggNOG; COG2090; LUCA. DR HOGENOM; HOG000107724; -. DR KO; K09738; -. DR OMA; PRGDCII; -. DR BioCyc; NMAR436308:GI3J-839-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 2.60.120.630; -; 1. DR InterPro; IPR007171; DUF371. DR InterPro; IPR023131; Mth639-like_domain. DR Pfam; PF04027; DUF371; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 138 AA; 15468 MW; 3CCE052285625374 CRC64; MKFKIEFSGH ENIRSNHQKT IEITKESHLT PQGDCIVGVN ANHACADLPQ DLKEKLKNPD SKITFSIDVG EHNFTIEGKG HPDLILTHDE DIVIRKSDFV CPRTLAVKCD KASDLLPREM VSMLQDPKTK GTFTITVD // ID A9A2B2_NITMS Unreviewed; 111 AA. AC A9A2B2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12823.1}; GN OrderedLocusNames=Nmar_0927 {ECO:0000313|EMBL:ABX12823.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12823.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12823.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12823.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12823.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0927; -. DR EnsemblBacteria; ABX12823; ABX12823; Nmar_0927. DR KEGG; nmr:Nmar_0927; -. DR eggNOG; arCOG08657; Archaea. DR eggNOG; ENOG411114I; LUCA. DR HOGENOM; HOG000105638; -. DR OMA; DAGSVEM; -. DR BioCyc; NMAR436308:GI3J-955-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 111 AA; 12608 MW; 3452661DE16C8B6A CRC64; MNIIDLHDPE RVNRTPDEVE VLLSSGNFIQ DEFKIYKVEL RLYLEKNDEK LGDYSLITSF VETDKGTVEM VYDEGFRGQD SLKRASAFLT SNLGMSGLIL RSVISLRGKT S // ID A9A188_NITMS Unreviewed; 543 AA. AC A9A188; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12374.1}; GN OrderedLocusNames=Nmar_0478 {ECO:0000313|EMBL:ABX12374.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12374.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12374.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12374.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12374.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0478; -. DR EnsemblBacteria; ABX12374; ABX12374; Nmar_0478. DR KEGG; nmr:Nmar_0478; -. DR eggNOG; ENOG4102U9R; Archaea. DR eggNOG; ENOG4110ZK4; LUCA. DR HOGENOM; HOG000023839; -. DR BioCyc; NMAR436308:GI3J-498-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 543 AA; 60812 MW; CE29DC854F6C4657 CRC64; MTIKNIQNIA MFSIIATITL ASFGTSNVFA EEERQYKMVG DVVPVLTFTF RDGVEIHSFP SFDMGENIVA DSGVSFSVQG TVTDAPLLHA AMDEAYKYRF SNAAFDYQLK YFDVTADFIK EGESILSFDY NNCRVDNYQV ETLDSNDYES YFKEVGFAVV DKIDFVCSGI TSNHEFVMPT EPITDFGDSG FKFAKDMSTS VTFIFDDGVE KIQFPVFNLV SAYEDSSENV VAQFQVEGIL EYYPLLFNAI DNARAISGTG YASNEDFDAT VEFSNGEKTL RGFDFRDCLV DDAKVHTVTD KEEGFTGKSG FAVVNTMAFT CSGLSPINMY YDELRGDTPI WKVTDLSNVY MESMDNTDKG LDVITTITFP DGVETIEFSM FKQGEVLTAT ENVDNENGDK DVAAQKFTRK TIAPTLELRG ILGDYPMLYN HVDHNIQFQT VKGTALKDLV DIDVEIVSNG ETIRGFNYSN CRATDYTVET DPNTEESYVK NKFALENVFD FECQGYTPNN PMYDAMFEVD SADNISSADL RDTQNWGNGF YAQ // ID A9A1Y4_NITMS Unreviewed; 222 AA. AC A9A1Y4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 46. DE SubName: Full=Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:ABX12397.1}; GN OrderedLocusNames=Nmar_0501 {ECO:0000313|EMBL:ABX12397.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12397.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12397.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12397.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12397.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Y4; -. DR STRING; 436308.Nmar_0501; -. DR EnsemblBacteria; ABX12397; ABX12397; Nmar_0501. DR KEGG; nmr:Nmar_0501; -. DR eggNOG; arCOG03056; Archaea. DR eggNOG; COG0671; LUCA. DR HOGENOM; HOG000108870; -. DR KO; K19302; -. DR OMA; CAFTIAM; -. DR BioCyc; NMAR436308:GI3J-521-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 1.20.144.10; -; 1. DR InterPro; IPR000326; P_Acid_Pase_2/haloperoxidase. DR Pfam; PF01569; PAP2; 1. DR SMART; SM00014; acidPPc; 1. DR SUPFAM; SSF48317; SSF48317; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 31 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 55 77 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 84 102 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 145 161 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 168 187 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 193 211 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 84 208 acidPPc. {ECO:0000259|SMART:SM00014}. SQ SEQUENCE 222 AA; 25052 MW; 6B4AEE0762CFB9FD CRC64; MQSWLFDIRS RSFVLLTILF LILTWLVYSG ITESFDQSIT LFFAENVGNP TLDIVMQYIT ESGDVFNMLV FGIVMLIIPK TRRIGITLMI LIVLSTLLTG YIKCGIDRDR PDFDYEGVEF PVEISRDTFA LFCEGGFDAS YPSGHAARAV IFGIILGYAL SERFPRGAYL MLLYPVMISL SRVYVLQHYP MDVIGGTVIG IMLAGVMANR TKLYKIFDKS KT // ID A9A3E3_NITMS Unreviewed; 303 AA. AC A9A3E3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=Transcription factor TFIIB cyclin-related {ECO:0000313|EMBL:ABX12875.1}; GN OrderedLocusNames=Nmar_0979 {ECO:0000313|EMBL:ABX12875.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12875.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12875.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12875.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12875.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3E3; -. DR STRING; 436308.Nmar_0979; -. DR EnsemblBacteria; ABX12875; ABX12875; Nmar_0979. DR KEGG; nmr:Nmar_0979; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; TEITIRY; -. DR BioCyc; NMAR436308:GI3J-1007-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR Gene3D; 1.10.472.10; -; 2. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR013150; TFIIB_cyclin. DR InterPro; IPR013137; Znf_TFIIB. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF08271; TF_Zn_Ribbon; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SMART; SM00385; CYCLIN; 2. DR SUPFAM; SSF47954; SSF47954; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 120 201 CYCLIN. {ECO:0000259|SMART:SM00385}. FT DOMAIN 214 295 CYCLIN. {ECO:0000259|SMART:SM00385}. SQ SEQUENCE 303 AA; 33473 MW; 7FE7C6D1669A10F2 CRC64; MITELVHQKS CKKNKIVTDL NTGEIACTNC GAVLSERVVD SGPESLGMTG EEYQTNSRVG RKISLKMIDM GLSTIIEAKD KDATGKGLSN ENKRMFYRLR MWDRNSRSAS TAKSFQKAFT MLDGISAKLG LPEPVIEQTA YLFRKIAAKK ILAGRSTAGI LCAAIYITCR MTNTPRTLQD VANAGNVNKK NIQRTYRFLA RELDITPEIY HPTEFVTRIA KAVDISEKTE RLAFRILDLS ARNGVLESKN PMAMAAAATY LASVKNDERI SQLKISKVSG ISAVTIRDRT KEILKKIGGE ING // ID A9A491_NITMS Unreviewed; 369 AA. AC A9A491; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 59. DE SubName: Full=Small GTP-binding protein {ECO:0000313|EMBL:ABX12580.1}; GN OrderedLocusNames=Nmar_0684 {ECO:0000313|EMBL:ABX12580.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12580.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12580.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12580.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12580.1; -; Genomic_DNA. DR ProteinModelPortal; A9A491; -. DR STRING; 436308.Nmar_0684; -. DR EnsemblBacteria; ABX12580; ABX12580; Nmar_0684. DR KEGG; nmr:Nmar_0684; -. DR eggNOG; arCOG00358; Archaea. DR eggNOG; COG1163; LUCA. DR HOGENOM; HOG000112078; -. DR KO; K06944; -. DR OMA; AAWLKVM; -. DR BioCyc; NMAR436308:GI3J-709-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005525; F:GTP binding; IEA:InterPro. DR Gene3D; 3.40.50.300; -; 2. DR InterPro; IPR031167; G_OBG. DR InterPro; IPR031662; GTP-binding_2. DR InterPro; IPR006074; GTP1-OBG_CS. DR InterPro; IPR006073; GTP_binding_domain. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR005225; Small_GTP-bd_dom. DR InterPro; IPR004095; TGS. DR InterPro; IPR012676; TGS-like. DR Pfam; PF01926; MMR_HSR1; 1. DR Pfam; PF16897; MMR_HSR1_Xtn; 1. DR Pfam; PF02824; TGS; 1. DR PRINTS; PR00326; GTP1OBG. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF81271; SSF81271; 1. DR TIGRFAMs; TIGR00231; small_GTP; 1. DR PROSITE; PS51710; G_OBG; 1. DR PROSITE; PS00905; GTP1_OBG; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 64 290 OBG-type G (guanine nucleotide-binding). FT {ECO:0000259|PROSITE:PS51710}. SQ SEQUENCE 369 AA; 41020 MW; 96A7368FF36E1B4F CRC64; MGIPEKIKAI QDEMARTQIN KATEHHLGLL KAKIAKLKRE QEDNVAKKSG MKSDGFDVRR TGDATVVFIG LPSVGKSTLL NRLTGAKSAV GAFQFTTLTV VPGMMEYRGA KIQVLDLPGI IKGASTGKGL GKRILSVART ADLVLLVLDV FQPYHEDVLV NELGNIGIRL NQLPPNITIE KASMGGIAIA QQVKLTRITE KHLKDILHLY GIVSARVVVR EDITSEQLSD HIAGNISYSK ALTILNKIDL VDKKFLDDLK TKIKSDVIEV SANSDINIEQ LKEKIYEKLK FIRIYMRPKG GETDFKEPLI AREGDTVEDI CNKLHRRMKR EFRYGMVWGK SVKFGGQRVG LSHILQDEDV LTIIKTRGT // ID A9A1W3_NITMS Unreviewed; 198 AA. AC A9A1W3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12084.1}; GN OrderedLocusNames=Nmar_0188 {ECO:0000313|EMBL:ABX12084.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12084.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12084.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12084.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12084.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1W3; -. DR STRING; 436308.Nmar_0188; -. DR EnsemblBacteria; ABX12084; ABX12084; Nmar_0188. DR KEGG; nmr:Nmar_0188; -. DR eggNOG; arCOG04604; Archaea. DR eggNOG; COG4276; LUCA. DR HOGENOM; HOG000110908; -. DR OMA; LEWDCET; -. DR BioCyc; NMAR436308:GI3J-190-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.30.530.20; -; 1. DR InterPro; IPR019587; Polyketide_cyclase/dehydratase. DR InterPro; IPR023393; START-like_dom. DR Pfam; PF10604; Polyketide_cyc2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 198 AA; 22173 MW; 0C5A19934803AFCC CRC64; MTLVTKSIDI KTPVENVFTY FARPEHVSDQ IKTDAVGMTV VPMDIKEGMG VGTTFRIIGD FSGKRLEWDC ETTEFVRNEK ITAKQIEGPF KKWQITNEFK SLGNNLTRVT MSVDYEMPFG PLGAIMDKAK FAKSAERGME TALYNVRGLL EGNGSIPVYI TLEAYQKLLA EKKKMNDVPV STALTAIIEK YNEIEAKA // ID A9A344_NITMS Unreviewed; 110 AA. AC A9A344; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=NADH-ubiquinone/plastoquinone oxidoreductase chain 3 {ECO:0000313|EMBL:ABX12172.1}; GN OrderedLocusNames=Nmar_0276 {ECO:0000313|EMBL:ABX12172.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12172.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12172.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12172.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12172.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0276; -. DR EnsemblBacteria; ABX12172; ABX12172; Nmar_0276. DR KEGG; nmr:Nmar_0276; -. DR eggNOG; arCOG01557; Archaea. DR eggNOG; COG0838; LUCA. DR HOGENOM; HOG000109685; -. DR KO; K00330; -. DR OMA; LPMECGQ; -. DR BioCyc; NMAR436308:GI3J-286-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:InterPro. DR InterPro; IPR000440; NADH_UbQ/plastoQ_OxRdtase_su3. DR PANTHER; PTHR11058; PTHR11058; 1. DR Pfam; PF00507; Oxidored_q4; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Ubiquinone {ECO:0000313|EMBL:ABX12172.1}. FT TRANSMEM 51 71 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 83 102 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 110 AA; 12441 MW; 01F1958713F80BBE CRC64; MFAFGIAAMA PALIISRMVS PRKRSNPVKF LPMECGQVPS GEGRTHFMMQ YYPYILMFVV FDVMAIFLYA WGSALLELPK SATLPMIGFL AIMFGAMAFA LYQSGRRRIW // ID A9A500_NITMS Unreviewed; 216 AA. AC A9A500; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11909.1}; GN OrderedLocusNames=Nmar_0009 {ECO:0000313|EMBL:ABX11909.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11909.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11909.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11909.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11909.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0009; -. DR EnsemblBacteria; ABX11909; ABX11909; Nmar_0009. DR KEGG; nmr:Nmar_0009; -. DR eggNOG; arCOG01806; Archaea. DR eggNOG; ENOG410ZXD4; LUCA. DR HOGENOM; HOG000110307; -. DR OMA; MDLINYT; -. DR BioCyc; NMAR436308:GI3J-9-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR027795; GATS-like_ACT_dom. DR Pfam; PF13840; ACT_7; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 151 211 ACT_7. {ECO:0000259|Pfam:PF13840}. SQ SEQUENCE 216 AA; 24761 MW; 20043D180FD52BEC CRC64; MSVPEIVREM ITRNRSIYDC MKMDLINYTA LAVKIQPEVE RILGNSVNLN TIVVAIKRYA DSFEIKEEVK EEPVLKNARL ALTDGIMDIK FSIKDSNQID PMAILDKFSK ITNNYEFFRM SDSFRFLTED MEDIRQIFGN VSDREDVFST GLAKIKITIP NSQNQSDVVS YVAEVLHANG IELVNAFFSQ DNIVIFLNEK DASRAYEILH SDIMRA // ID A9A540_NITMS Unreviewed; 241 AA. AC A9A540; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE SubName: Full=Adenylylsulfate reductase, thioredoxin dependent {ECO:0000313|EMBL:ABX11949.1}; DE EC=1.8.4.8 {ECO:0000313|EMBL:ABX11949.1}; GN OrderedLocusNames=Nmar_0049 {ECO:0000313|EMBL:ABX11949.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11949.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11949.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11949.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11949.1; -; Genomic_DNA. DR ProteinModelPortal; A9A540; -. DR STRING; 436308.Nmar_0049; -. DR EnsemblBacteria; ABX11949; ABX11949; Nmar_0049. DR KEGG; nmr:Nmar_0049; -. DR eggNOG; arCOG00124; Archaea. DR eggNOG; COG0175; LUCA. DR HOGENOM; HOG000249395; -. DR KO; K00390; -. DR OMA; KEILAWS; -. DR BioCyc; NMAR436308:GI3J-49-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004604; F:phosphoadenylyl-sulfate reductase (thioredoxin) activity; IEA:UniProtKB-EC. DR GO; GO:0019344; P:cysteine biosynthetic process; IEA:InterPro. DR GO; GO:0019379; P:sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin); IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR011798; APS_reductase. DR InterPro; IPR004511; PAPS/APS_Rdtase. DR InterPro; IPR002500; PAPS_reduct. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR Pfam; PF01507; PAPS_reduct; 1. DR PIRSF; PIRSF000857; PAPS_reductase; 1. DR TIGRFAMs; TIGR02055; APS_reductase; 1. DR TIGRFAMs; TIGR00434; cysH; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000313|EMBL:ABX11949.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 36 209 PAPS_reduct. {ECO:0000259|Pfam:PF01507}. FT COILED 2 29 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 241 AA; 28337 MW; 270186AC844B0475 CRC64; MTRFTQEQVD DLNSKIKTAE EALQWVSDNL HPKVAKASSF GAEDAVIMDM MLKINPEFRF FTLDTGRLPQ ETYDIMDVLR KKYHITIEVL FPDTKEVEDM VKEKGLNLFY ESVENRKLCC EIRKVHPMNK MLSTLDGWIT GLRREQTKIR EDVTMFQLDH GHGGILKINP IIDWTWDQIQ EHIKKYDLPY NSLLDKGYPS IGCEPCTRPI KPGEDIRAGR WWWEQGEHKE CGLHIERKRV E // ID A9A2H6_NITMS Unreviewed; 258 AA. AC A9A2H6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE RecName: Full=Modification methylase {ECO:0000256|RuleBase:RU362026}; DE EC=2.1.1.113 {ECO:0000256|RuleBase:RU362026}; GN OrderedLocusNames=Nmar_1319 {ECO:0000313|EMBL:ABX13215.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13215.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13215.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13215.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + DNA cytosine = S- CC adenosyl-L-homocysteine + DNA N(4)-methylcytosine. CC {ECO:0000256|RuleBase:RU362026}. CC -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family. CC {ECO:0000256|RuleBase:RU362026}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13215.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2H6; -. DR STRING; 436308.Nmar_1319; -. DR REBASE; 16736; M.NmaSCMORF1319P. DR EnsemblBacteria; ABX13215; ABX13215; Nmar_1319. DR KEGG; nmr:Nmar_1319; -. DR eggNOG; arCOG00115; Archaea. DR eggNOG; COG0863; LUCA. DR HOGENOM; HOG000108737; -. DR KO; K00571; -. DR OMA; SIMHEYI; -. DR BioCyc; NMAR436308:GI3J-1352-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro. DR GO; GO:0015667; F:site-specific DNA-methyltransferase (cytosine-N4-specific) activity; IEA:UniProtKB-EC. DR GO; GO:0009307; P:DNA restriction-modification system; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR002941; DNA_methylase_N4/N6. DR InterPro; IPR002052; DNA_methylase_N6_adenine_CS. DR InterPro; IPR001091; RM_Methylase. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF01555; N6_N4_Mtase; 1. DR PRINTS; PR00508; S21N4MTFRASE. DR SUPFAM; SSF53335; SSF53335; 1. DR PROSITE; PS00092; N6_MTASE; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000256|RuleBase:RU362026, KW ECO:0000313|EMBL:ABX13215.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Restriction system {ECO:0000256|RuleBase:RU362026}; KW S-adenosyl-L-methionine {ECO:0000256|RuleBase:RU362026}; KW Transferase {ECO:0000256|RuleBase:RU362026, KW ECO:0000313|EMBL:ABX13215.1}. FT DOMAIN 26 245 N6_N4_Mtase. {ECO:0000259|Pfam:PF01555}. SQ SEQUENCE 258 AA; 30560 MW; F3C3AB29F3457169 CRC64; MKKIEINKIY NQNCIDGMSS IPKNKIDLVI TDPPFAINFK AKKANYNRTS SRVLSGYNEI KPEDYYDFTF SWMTEVYRIL KDSGSMYVFS GWNNLKDILR ALDDVGFVTI NHIIWKYQFG VVTKKKFVTS HYHCLYVCKD DKKRKFFPFS RFKKEDKTKD GRSLHYKDKE DVWDIKREYW TGDEKTPTKL PSELIQKILE YSSEKKDIVL DPFIGSGQVA VVSKSLGRRY LGFEIVPDYY KFAKKRLDKD LYRIKKSK // ID A9A113_NITMS Unreviewed; 149 AA. AC A9A113; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=PEBP family protein {ECO:0000313|EMBL:ABX11974.1}; GN OrderedLocusNames=Nmar_0074 {ECO:0000313|EMBL:ABX11974.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11974.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11974.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11974.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11974.1; -; Genomic_DNA. DR ProteinModelPortal; A9A113; -. DR STRING; 436308.Nmar_0074; -. DR EnsemblBacteria; ABX11974; ABX11974; Nmar_0074. DR KEGG; nmr:Nmar_0074; -. DR eggNOG; arCOG04702; Archaea. DR eggNOG; COG1881; LUCA. DR HOGENOM; HOG000236248; -. DR KO; K06910; -. DR OMA; WHWIVAN; -. DR BioCyc; NMAR436308:GI3J-75-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.90.280.10; -; 1. DR InterPro; IPR008914; PtdEtn-bd_prot_PEBP. DR InterPro; IPR005247; YbhB_YbcL. DR Pfam; PF01161; PBP; 1. DR SUPFAM; SSF49777; SSF49777; 1. DR TIGRFAMs; TIGR00481; TIGR00481; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 149 AA; 16212 MW; E4AE6BF4F37A9F10 CRC64; MELESSSFEN GGTIPKKFGY KNGNVSPSLI INDVPDSAKS LALVMDDPDA MGAVGKVWVH WVLWNIPTEV TKMDENSIPE NSIEGETDFG EIGYGGPAPP DKEHTYIFKL YALDTALDLG KGSTKKDLEN SIQDHIIAKA KLTGKYAPQ // ID A9A264_NITMS Unreviewed; 416 AA. AC A9A264; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 56. DE SubName: Full=Sodium/hydrogen exchanger {ECO:0000313|EMBL:ABX12477.1}; GN OrderedLocusNames=Nmar_0581 {ECO:0000313|EMBL:ABX12477.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12477.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12477.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12477.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12477.1; -; Genomic_DNA. DR ProteinModelPortal; A9A264; -. DR STRING; 436308.Nmar_0581; -. DR EnsemblBacteria; ABX12477; ABX12477; Nmar_0581. DR KEGG; nmr:Nmar_0581; -. DR eggNOG; arCOG01953; Archaea. DR eggNOG; COG0475; LUCA. DR HOGENOM; HOG000131547; -. DR OMA; LIGVIRF; -. DR BioCyc; NMAR436308:GI3J-604-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0015299; F:solute:proton antiporter activity; IEA:InterPro. DR InterPro; IPR006153; Cation/H_exchanger. DR Pfam; PF00999; Na_H_Exchanger; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Transport {ECO:0000256|RuleBase:RU003721}. FT TRANSMEM 6 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 37 57 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 69 89 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 101 124 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 130 149 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 161 186 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 198 220 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 241 268 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 280 298 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 310 336 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 373 392 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 16 393 Na_H_Exchanger. FT {ECO:0000259|Pfam:PF00999}. SQ SEQUENCE 416 AA; 43777 MW; A4BEDD1F623B026C CRC64; MAADAHFIET IIGIGILLFA AKLMAELFLR LKLPIVLGEL LAGMIVGPFA LGQFFIIDGK QLLHINDEIK ILGEMGAIVI LFMAGLEMTP KEFLKGGKAS FTVGTLGVVV PFFAGFLIFG FFGFEALESM LIATALTATS IAISIQVLSE FGKLKAPEAR LIIGAAVVDD ILAIAVLSVV ISITGSDAGI ESIVITDVMI TILQVLGFFA IMLIVAVIVI PKVITPRLWK AKGSVEGIAT ASFFGAAALA GSIGLSPIVG AFAVGMALST TKVFEKVENY IGKIGLIFAP LFFAIIGAQV DLRAVDLNIL MISGVIIAVA IVTKLLGCGL PAMFFLKNKA QGMRVGIGMI SRGEVGLIVA GVGVTAGVLT SEVYSTIVIM VAVTTIITPI WLKMEYRKEQ RSGSGEPEQS IEQKPE // ID A9A5T2_NITMS Unreviewed; 675 AA. AC A9A5T2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13087.1}; GN OrderedLocusNames=Nmar_1191 {ECO:0000313|EMBL:ABX13087.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13087.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13087.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13087.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13087.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5T2; -. DR STRING; 436308.Nmar_1191; -. DR EnsemblBacteria; ABX13087; ABX13087; Nmar_1191. DR KEGG; nmr:Nmar_1191; -. DR eggNOG; arCOG02007; Archaea. DR eggNOG; COG1331; LUCA. DR HOGENOM; HOG000231201; -. DR KO; K06888; -. DR OMA; LFWDSQG; -. DR BioCyc; NMAR436308:GI3J-1224-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 1.50.10.10; -; 2. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR008928; 6-hairpin_glycosidase-like. DR InterPro; IPR012341; 6hp_glycosidase. DR InterPro; IPR004879; DUF255. DR InterPro; IPR024705; Ssp411. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF03190; Thioredox_DsbH; 1. DR PIRSF; PIRSF006402; UCP006402_thioredoxin; 1. DR SUPFAM; SSF48208; SSF48208; 1. DR SUPFAM; SSF52833; SSF52833; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 164 Thioredox_DsbH. FT {ECO:0000259|Pfam:PF03190}. SQ SEQUENCE 675 AA; 76743 MW; 90094CE297437319 CRC64; MTENNLIHET SPYLLQHAHN PVDWYGWNDE ALKKAKDENK PIFLSIGYSS CHWCHVMAHE SFENEEVAKF MNENFVNIKV DREERPDIDD IYQKACQIAT GQGGWPLSIF LTPDQKPFYV GTYFPILDSY GRPGFGSICR QLSQAWKEKP KDIEKSADNF LDALNKTEKV SISSKLERTI LDEAAMNLFQ LGDSAYGGFG SAPKFPNAAN VSFLFRYAKI SGLSKFTEFG LKTLKKMANG GIFDQIGGGF HRYSTDAKWL VPHFEKMLYD NALIPVNYAE AFQITKDPFY LDVLKKTLDF VLREMTSPEG GFYSAYDADS EGVEGKFYVW KKSEIKEILG DDADIFCLFY DATDGGNWEG NNILCNNLNI STVAFNFGTT EEKVREILQA CSKKLLDVRS KRVAPGLDDK ILVSWNSLMI TAFAKGYRVT NESRYLDAAK DCISFIENNL FSGDKLLRTY KNKTAKIDGY LEDYSYFVNC LLDVFEIEPD PKYLKLALKL GHHLVEHFWD SENNSFFMTS DNHEKLIIRP KSNYDLSLPS GNSVSAFVML RLFHFSQEQQ FLDIATKIME SQAQMAAENP FGFGYLLNTI SIYLEKPVEI TIINTENSQL CDSILLEYLP NSIVVTIQNS TQLSALSEYP FFAGKSFEEK TSAFVCKNFT CSLPLHTIDE INSHL // ID A9A2L3_NITMS Unreviewed; 174 AA. AC A9A2L3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 45. DE SubName: Full=Flavodoxin {ECO:0000313|EMBL:ABX13252.1}; GN OrderedLocusNames=Nmar_1356 {ECO:0000313|EMBL:ABX13252.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13252.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13252.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13252.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13252.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2L3; -. DR STRING; 436308.Nmar_1356; -. DR EnsemblBacteria; ABX13252; ABX13252; Nmar_1356. DR KEGG; nmr:Nmar_1356; -. DR eggNOG; COG0716; LUCA. DR HOGENOM; HOG000030543; -. DR KO; K03839; -. DR OMA; ASKGMAD; -. DR BioCyc; NMAR436308:GI3J-1390-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0010181; F:FMN binding; IEA:InterPro. DR Gene3D; 3.40.50.360; -; 1. DR InterPro; IPR008254; Flavodoxin/NO_synth. DR InterPro; IPR010086; Flavodoxin_lc. DR InterPro; IPR029039; Flavoprotein-like_dom. DR Pfam; PF00258; Flavodoxin_1; 1. DR PIRSF; PIRSF038996; FldA; 1. DR SUPFAM; SSF52218; SSF52218; 1. DR TIGRFAMs; TIGR01752; flav_long; 1. DR PROSITE; PS50902; FLAVODOXIN_LIKE; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 169 Flavodoxin-like. FT {ECO:0000259|PROSITE:PS50902}. SQ SEQUENCE 174 AA; 18867 MW; CF1DBB6835BA3FC3 CRC64; MTVGIYFGSQ TGKTELVCAK IKSELGDAVT DPKDVSELGE DPSQFLEMDG LICAIPTWNT GEDENRSGTA WDDLLEKIGE LDLKGKPVAI CGLGDAAGYA DNFVDAMEEL HRYFQKAGAK MVGYVSTDGY TFTGSKSVID GKFCGLPVDE DSESEHTDER VTKWCSQLKS EMGL // ID A9A3H7_NITMS Unreviewed; 99 AA. AC A9A3H7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12909.1}; GN OrderedLocusNames=Nmar_1013 {ECO:0000313|EMBL:ABX12909.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12909.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12909.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12909.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12909.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1013; -. DR EnsemblBacteria; ABX12909; ABX12909; Nmar_1013. DR KEGG; nmr:Nmar_1013; -. DR BioCyc; NMAR436308:GI3J-1041-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 99 AA; 11435 MW; 4D7D58E9E2B86F49 CRC64; MVHKVLVDEQ ALGWGEDNQD LIHQKYEKIF FVGTKPAPPK GSNDKEIGTF CEEQGCNLIT SDYTAYTHFL ENPRINAVQI EKFQYNSKAS RQIYLIRIL // ID A9A1J7_NITMS Unreviewed; 214 AA. AC A9A1J7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13176.1}; GN OrderedLocusNames=Nmar_1280 {ECO:0000313|EMBL:ABX13176.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13176.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13176.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13176.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13176.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1280; -. DR EnsemblBacteria; ABX13176; ABX13176; Nmar_1280. DR KEGG; nmr:Nmar_1280; -. DR OMA; HAHIPDP; -. DR BioCyc; NMAR436308:GI3J-1313-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 214 AA; 22691 MW; 915B0DCA7E532D72 CRC64; MTFLTQKKTS MIAGTAILTI ALAFGGYSFA SHSFEAGVSG DNIPDNTHIS LNGITLGPGE VMPLYDASPN FVSGHFLLTD ECVPVDDDTN APRVAVIAGH IDEHNSATHI EPMPLFYIDL VSNGDNRCVW HAHIPDPLNG GAPRVTDIAI ANLGTSDVTF SGQHIVDINI QSVLGNIADA PYTDGPYVDL SANTIYDLND DEHDNDGLGH GGHD // ID A9A333_NITMS Unreviewed; 358 AA. AC A9A333; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 59. DE RecName: Full=Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087}; DE Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087}; DE EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087}; GN Name=hemA {ECO:0000256|HAMAP-Rule:MF_00087}; GN OrderedLocusNames=Nmar_0265 {ECO:0000313|EMBL:ABX12161.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12161.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12161.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12161.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the NADPH-dependent reduction of glutamyl- CC tRNA(Glu) to glutamate 1-semialdehyde (GSA). {ECO:0000256|HAMAP- CC Rule:MF_00087}. CC -!- CATALYTIC ACTIVITY: L-glutamate 1-semialdehyde + NADP(+) + CC tRNA(Glu) = L-glutamyl-tRNA(Glu) + NADPH. {ECO:0000256|HAMAP- CC Rule:MF_00087}. CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin- CC IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step CC 1/2. {ECO:0000256|HAMAP-Rule:MF_00087}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00087}. CC -!- DOMAIN: Possesses an unusual extended V-shaped dimeric structure CC with each monomer consisting of three distinct domains arranged CC along a curved 'spinal' alpha-helix. The N-terminal catalytic CC domain specifically recognizes the glutamate moiety of the CC substrate. The second domain is the NADPH-binding domain, and the CC third C-terminal domain is responsible for dimerization. CC {ECO:0000256|HAMAP-Rule:MF_00087}. CC -!- MISCELLANEOUS: During catalysis, the active site Cys acts as a CC nucleophile attacking the alpha-carbonyl group of tRNA-bound CC glutamate with the formation of a thioester intermediate between CC enzyme and glutamate, and the concomitant release of tRNA(Glu). CC The thioester intermediate is finally reduced by direct hydride CC transfer from NADPH, to form the product GSA. {ECO:0000256|HAMAP- CC Rule:MF_00087}. CC -!- SIMILARITY: Belongs to the glutamyl-tRNA reductase family. CC {ECO:0000256|HAMAP-Rule:MF_00087}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12161.1; -; Genomic_DNA. DR ProteinModelPortal; A9A333; -. DR STRING; 436308.Nmar_0265; -. DR EnsemblBacteria; ABX12161; ABX12161; Nmar_0265. DR KEGG; nmr:Nmar_0265; -. DR eggNOG; arCOG01036; Archaea. DR eggNOG; COG0373; LUCA. DR HOGENOM; HOG000109651; -. DR KO; K02492; -. DR OMA; PRAVNED; -. DR BioCyc; NMAR436308:GI3J-275-MONOMER; -. DR UniPathway; UPA00251; UER00316. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008883; F:glutamyl-tRNA reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.40.50.720; -; 1. DR HAMAP; MF_00087; Glu_tRNA_reductase; 1. DR InterPro; IPR000343; 4pyrrol_synth_GluRdtase. DR InterPro; IPR015895; 4pyrrol_synth_GluRdtase_N. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR006151; Shikm_DH/Glu-tRNA_Rdtase. DR Pfam; PF05201; GlutR_N; 1. DR Pfam; PF01488; Shikimate_DH; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR SUPFAM; SSF69742; SSF69742; 2. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW NADP {ECO:0000256|HAMAP-Rule:MF_00087}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00087, KW ECO:0000313|EMBL:ABX12161.1}; KW Porphyrin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00087}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 13 175 GlutR_N. {ECO:0000259|Pfam:PF05201}. FT DOMAIN 195 317 Shikimate_DH. {ECO:0000259|Pfam:PF01488}. FT NP_BIND 208 213 NADP. {ECO:0000256|HAMAP-Rule:MF_00087}. FT BINDING 128 128 Substrate. {ECO:0000256|HAMAP- FT Rule:MF_00087}. SQ SEQUENCE 358 AA; 39649 MW; 6D5D89A31E997AB2 CRC64; MGNVSFDVMN ARVTFKNVPI HSLSKFEFKD VSAACEEFKK IPGVDECIII QTASRVEIFT VSNVEDDDSP DARRDEAKGL ILNQVKDTWV SLSSLEQIDI DHFDQTIEVY KGNDVYLNLL RLAAGLDSFV VGKREVYDEI VQSLEKAKQA GTSGKILNKL FDSVVRLATK MRDATGIEKD VISLGDIAVK LVDEKAGLDA KKKVLLMGTG ESAAQVAKTL NKKEVPYDVA SRTLDRATGF STVVGGTPVD FNDALAGLDK YDIVFVATTA DYFIITHERI RLVMEEKKKG TLIMDISEPR AVNEDITSLP GIKLLFRDQI AELYEESVKA RKGIVPAVEK IIDKELPVLS VRMQKLEN // ID A9A5J2_NITMS Unreviewed; 88 AA. AC A9A5J2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE RecName: Full=50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; GN Name=rpl23p {ECO:0000256|HAMAP-Rule:MF_01369}; GN OrderedLocusNames=Nmar_0807 {ECO:0000313|EMBL:ABX12703.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12703.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12703.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12703.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to 23S rRNA. One of the proteins that surrounds CC the polypeptide exit tunnel on the outside of the ribosome. CC {ECO:0000256|HAMAP-Rule:MF_01369}. CC -!- SUBUNIT: Part of the 50S ribosomal subunit. Contacts protein L29. CC {ECO:0000256|HAMAP-Rule:MF_01369}. CC -!- SIMILARITY: Belongs to the ribosomal protein L23P family. CC {ECO:0000256|HAMAP-Rule:MF_01369}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12703.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5J2; -. DR STRING; 436308.Nmar_0807; -. DR EnsemblBacteria; ABX12703; ABX12703; Nmar_0807. DR KEGG; nmr:Nmar_0807; -. DR eggNOG; arCOG04072; Archaea. DR eggNOG; COG0089; LUCA. DR HOGENOM; HOG000231364; -. DR KO; K02892; -. DR OMA; KFPFITE; -. DR BioCyc; NMAR436308:GI3J-834-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro. DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 3.30.70.330; -; 1. DR HAMAP; MF_01369_A; Ribosomal_L23_A; 1. DR InterPro; IPR012677; Nucleotide-bd_a/b_plait. DR InterPro; IPR012678; Ribosomal_L23/L15e_core_dom. DR InterPro; IPR013025; Ribosomal_L25/23. DR Pfam; PF00276; Ribosomal_L23; 1. DR SUPFAM; SSF54189; SSF54189; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_01369, KW ECO:0000313|EMBL:ABX12703.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_01369, KW ECO:0000313|EMBL:ABX12703.1}; KW RNA-binding {ECO:0000256|HAMAP-Rule:MF_01369}; KW rRNA-binding {ECO:0000256|HAMAP-Rule:MF_01369}. SQ SEQUENCE 88 AA; 9976 MW; 4794E90E7AEAB99D CRC64; MNVDQASKII LKPYITEKTF AMVENESKIC FIVERSASKP EISEAVNTLY NEKVLNVNTA RTIYGKKAFV QFENTEKARD LATKIGML // ID A9A1S0_NITMS Unreviewed; 485 AA. AC A9A1S0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABX12041.1}; GN OrderedLocusNames=Nmar_0141 {ECO:0000313|EMBL:ABX12041.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12041.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12041.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12041.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12041.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1S0; -. DR STRING; 436308.Nmar_0141; -. DR EnsemblBacteria; ABX12041; ABX12041; Nmar_0141. DR KEGG; nmr:Nmar_0141; -. DR eggNOG; arCOG00856; Archaea. DR eggNOG; COG0318; LUCA. DR KO; K01897; -. DR OMA; WIRSAGC; -. DR BioCyc; NMAR436308:GI3J-144-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW. DR InterPro; IPR025110; AMP-bd_C. DR InterPro; IPR020845; AMP-binding_CS. DR InterPro; IPR000873; AMP-dep_Synth/Lig. DR Pfam; PF00501; AMP-binding; 1. DR Pfam; PF13193; AMP-binding_C; 1. DR PROSITE; PS00455; AMP_BINDING; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000313|EMBL:ABX12041.1}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 197 219 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 239 261 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 35 390 AMP-binding. {ECO:0000259|Pfam:PF00501}. FT DOMAIN 400 475 AMP-binding_C. FT {ECO:0000259|Pfam:PF13193}. SQ SEQUENCE 485 AA; 55773 MW; 1B88F571D2B454A4 CRC64; MSEENKIINS ETINQIFYDI FKNNWNEYFI FDTITQKKIK YSEFYNEIQL CIDKLTKNGI TEGSTICLIL ENSYNFVKII FSCIFSNLTV VPIDPQKGSE EIKEIIDSVN PQTIIFDNQK NIFSKNSIEI SKIVNDTQFS KPQKLEQIRN IDSDKDFLIT FTSGSTGKSK GVIHSLKNLI HCSLSFNEKF HFNSKNVFLH CLPMSYMAGI LNSIILPFIS NSKIVIIPRF TVKTVLDFWS IPLKYSVNTF WFTPTMIGLI LKFDRKNKID LSDKNLIGCV ATSSLNTSVK NDFEKKYDIE LFESYGLSEL LFVSTNSPNN NSFTAGQLIS GTNVKFDNDE ILVKVPWMFK KYFNSEKNNL ENNYFSTGDL GKISKDNLLI ITGRKKDLII KGGINISPKK IEDFILNKKF LKECVILGFP DPILGEKIVC FILKNSIDTD SKKELNKKIV EHLGNDYHID EFKELIEIPK NINGKIDKIQ IRNFF // ID A9A2I6_NITMS Unreviewed; 294 AA. AC A9A2I6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13225.1}; GN OrderedLocusNames=Nmar_1329 {ECO:0000313|EMBL:ABX13225.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13225.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13225.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13225.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13225.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13225; ABX13225; Nmar_1329. DR KEGG; nmr:Nmar_1329; -. DR eggNOG; arCOG08796; Archaea. DR eggNOG; ENOG41110WK; LUCA. DR BioCyc; NMAR436308:GI3J-1363-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 294 AA; 33782 MW; C2A10F9A2178D37C CRC64; MLKITSTVLL SCMIAISMTS ISWAEENFML TISSLSEYEE GQHSIINGKT ETLDGKPVSE VTIHVYFPSE IIKTSTNATG QFSVTSPLPV KVGEKDIEVY ARKDNKQANS QITYNVIESK PIIIQEAKQT KPESKKPKEI DPFSKMIQEL EKQKAEKIER ETSIKEQQEI SEKRRLAQKD LQNDLTESEK RNEVNSPRNV FYRFIQEVDS SVRGIFWQQF LFTERITQQA HEAKEMALKD GRTSFEAMKI FQNEAAVTQQ EVMEFNKNLS MQYGNATESI QNMFDENGKL PRED // ID A9A521_NITMS Unreviewed; 334 AA. AC A9A521; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11930.1}; GN OrderedLocusNames=Nmar_0030 {ECO:0000313|EMBL:ABX11930.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11930.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11930.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11930.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11930.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0030; -. DR EnsemblBacteria; ABX11930; ABX11930; Nmar_0030. DR KEGG; nmr:Nmar_0030; -. DR eggNOG; arCOG06534; Archaea. DR eggNOG; ENOG410YVDI; LUCA. DR BioCyc; NMAR436308:GI3J-30-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 334 AA; 38078 MW; BF74AD8943EBFAA9 CRC64; MNNYLIFGFI LSAIFIPITS YADNVELEIS APKIVDSTGN TVNEIFAPLN GVPFAYQPSA ILQNTGTSPI DFTFYAMVDD GNELLELSSF SASINPNQDF TLALTWNPQK EGKHTLIFGV WNNLGEKNDL ITPIELDVNV LSKDSSTNSI QIASFVDPTK DPQSYIDRYN NEESYKEWFD ENYSQYDSIE QAVGLPEALK EKVPTWVKNN AKWWSEGNID DDTFVSGVQF LMKEKIVNIP DLPEQSSEKT KPTFVDETKD PQSYIDRYNN EESYKEWFDE NYPDYTIEEA VGISKPIPGW IKNNADWWSE GLISEDEFVK GIEFLVENRI LIVN // ID A9A138_NITMS Unreviewed; 634 AA. AC A9A138; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit E {ECO:0000256|HAMAP-Rule:MF_00588}; DE Short=Glu-ADT subunit E {ECO:0000256|HAMAP-Rule:MF_00588}; DE EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00588}; GN Name=gatE {ECO:0000256|HAMAP-Rule:MF_00588}; GN OrderedLocusNames=Nmar_0099 {ECO:0000313|EMBL:ABX11999.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11999.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11999.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11999.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Allows the formation of correctly charged Gln-tRNA(Gln) CC through the transamidation of misacylated Glu-tRNA(Gln) in CC organisms which lack glutaminyl-tRNA synthetase. The reaction CC takes place in the presence of glutamine and ATP through an CC activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is CC specific for glutamate and does not act on aspartate. CC {ECO:0000256|HAMAP-Rule:MF_00588}. CC -!- CATALYTIC ACTIVITY: ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP CC + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. CC {ECO:0000256|HAMAP-Rule:MF_00588}. CC -!- SUBUNIT: Heterodimer of GatD and GatE. {ECO:0000256|HAMAP- CC Rule:MF_00588}. CC -!- SIMILARITY: Belongs to the GatB/GatE family. GatE subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00588}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11999.1; -; Genomic_DNA. DR ProteinModelPortal; A9A138; -. DR STRING; 436308.Nmar_0099; -. DR EnsemblBacteria; ABX11999; ABX11999; Nmar_0099. DR KEGG; nmr:Nmar_0099; -. DR eggNOG; arCOG01719; Archaea. DR eggNOG; COG2511; LUCA. DR HOGENOM; HOG000222914; -. DR KO; K03330; -. DR OMA; TSGFQRT; -. DR BioCyc; NMAR436308:GI3J-102-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:InterPro. DR GO; GO:0004812; F:aminoacyl-tRNA ligase activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0050567; F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-HAMAP. DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.10.410; -; 1. DR HAMAP; MF_00588; GatE; 1. DR InterPro; IPR017959; Asn/Gln-tRNA_amidoTrfase_suB/E. DR InterPro; IPR006075; Asn/Gln-tRNA_Trfase_suB/E_cat. DR InterPro; IPR018027; Asn/Gln_amidotransferase. DR InterPro; IPR003789; Asn/Gln_tRNA_amidoTrfrase-rel. DR InterPro; IPR004115; GAD-like. DR InterPro; IPR023168; GatB_Yqey_C. DR InterPro; IPR004414; GatE. DR PANTHER; PTHR11659; PTHR11659; 3. DR Pfam; PF02934; GatB_N; 1. DR Pfam; PF02637; GatB_Yqey; 1. DR SMART; SM00845; GatB_Yqey; 1. DR SUPFAM; SSF55261; SSF55261; 1. DR SUPFAM; SSF89095; SSF89095; 1. DR TIGRFAMs; TIGR00134; gatE_arch; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00588}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00588}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00588}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00588}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11999.1}. FT DOMAIN 485 627 GatB_Yqey. {ECO:0000259|SMART:SM00845}. SQ SEQUENCE 634 AA; 71542 MW; E16521940692C1F4 CRC64; MSEFSINELG VKVGLEIHQQ LATNKKLFCN CTPIDTDEYS IKFQRKLRAA KSELGEYDPA ALFEKSKSKT IMYFANPESS CLVEQDEEPP HELDVDAKKI SLVIASALKS DVFREIYPMR KTVVDGSNTT GFQRTMLISQ GGSFNVEDKE IGIQSICLEE DAAKILGEDG AIKKYGLERL GIPLVEIATE PFEVNPHEIK KIALSLGRIL RSTKKVKRGL GSIRQDVNVS IKDGNAVIEV KGVQQLDQLE KVVEYEAKRQ HGLLKISKKL QEIDWTHSDN DRKDVTELFK KCKSKIIQNA IKKNQKIVGI SFRNMSGMFG YAPHEGIRLG KEVAELVRFF GIGGVFHSDE LPNYGVENTD IDDLKKTLEI NDNDGFLVLA APEEKINVVI DQIILRIEYI RNEGIPIDTR LATQSGETKF LRPRPGAARM YPETDIPPII ISKTELDNAI NNIPKSWDDS IKDLQTEYQL NLQLSEQLFD SNYFELFEKI TEKTKVNPTF VASILCSTIT NLERNGLDSK LLKNEEITKT FQFLEEGKIA KESVEIIFEN IMNGKSHTIE KAMNNTSIET IDESELESIC KEIVEKNQKI VENQKERAIG PLMGIAMKEL RGKASGEIIN KLLLKNIKNK LENN // ID A9A145_NITMS Unreviewed; 306 AA. AC A9A145; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 38. DE SubName: Full=Methyltransferase type 12 {ECO:0000313|EMBL:ABX12006.1}; GN OrderedLocusNames=Nmar_0106 {ECO:0000313|EMBL:ABX12006.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12006.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12006.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12006.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12006.1; -; Genomic_DNA. DR ProteinModelPortal; A9A145; -. DR STRING; 436308.Nmar_0106; -. DR EnsemblBacteria; ABX12006; ABX12006; Nmar_0106. DR KEGG; nmr:Nmar_0106; -. DR eggNOG; arCOG04340; Archaea. DR eggNOG; COG0500; LUCA. DR OMA; SYGENIR; -. DR BioCyc; NMAR436308:GI3J-109-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12006.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12006.1}. SQ SEQUENCE 306 AA; 35956 MW; 9571E4117ED1727D CRC64; MNESKKYDFI DNAFCPCCSS NNLYIAFEKS FFNLPVLKCN ECGLHFIWDK NLTLNLEKYY DETYWDVFRN IKNKQIKNQQ TDNAYLIKKF PKFIQKFFDW TGVRKSLSRS QSWYLLPLLK KKHSLFELGS GEGFILEFFE KNGFDVFGME PSKINFSLIN RKLTYGKCVT GSADDIKSIK KKFDVIILSH VFEHLKDCKQ VLLDLKKILN PNGIIFIDVP NCSNLKTLHE SIFTQPHIFH FTKKSIESLS SSTGFSIIKA DFFYGKVSTF LDHIKYFLFW IFKKDFFIVS DQKNGNYLRI ILTNSD // ID A9A5D8_NITMS Unreviewed; 281 AA. AC A9A5D8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 51. DE RecName: Full=Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; GN OrderedLocusNames=Nmar_0441 {ECO:0000313|EMBL:ABX12337.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12337.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12337.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12337.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Contains 2 rhodanese domains. CC {ECO:0000256|RuleBase:RU000507}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12337.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5D8; -. DR STRING; 436308.Nmar_0441; -. DR EnsemblBacteria; ABX12337; ABX12337; Nmar_0441. DR KEGG; nmr:Nmar_0441; -. DR eggNOG; arCOG02019; Archaea. DR eggNOG; COG2897; LUCA. DR HOGENOM; HOG000157236; -. DR KO; K01011; -. DR OMA; IQAWPAD; -. DR BioCyc; NMAR436308:GI3J-459-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004792; F:thiosulfate sulfurtransferase activity; IEA:InterPro. DR Gene3D; 3.40.250.10; -; 2. DR InterPro; IPR001763; Rhodanese-like_dom. DR InterPro; IPR001307; Thiosulphate_STrfase_CS. DR Pfam; PF00581; Rhodanese; 2. DR SMART; SM00450; RHOD; 2. DR SUPFAM; SSF52821; SSF52821; 2. DR PROSITE; PS00683; RHODANESE_2; 1. DR PROSITE; PS50206; RHODANESE_3; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000256|RuleBase:RU000507}. FT DOMAIN 20 128 Rhodanese. {ECO:0000259|PROSITE:PS50206}. FT DOMAIN 159 280 Rhodanese. {ECO:0000259|PROSITE:PS50206}. SQ SEQUENCE 281 AA; 32313 MW; CCF2FBFEB6E375E0 CRC64; MSYAHPEVLV DTEWVSQNPP NENRKLVEVD YDPVNGYQKG HISGASLIWW KRDINDPVTR DIISKKQFEE LMAKNGITKD TEVVLYGDFN NWFAAFVFWV FKIYGHENLK IMNGGRKKWE LENRDYTTDE PQFESVTYDA QPPDEGLRAY LFDVSRALGK EDTVMVDVRS PAEFSGEITA PPEYPMEHAQ RGGHIPDANN IPWATAVNDA DGTFKTVDEL KQNYEPKGVT PDKDVICYCR IGERSSHSWF VLKYLLGYPK VRNYDGSWTE WGNMIGNPVE K // ID A9A131_NITMS Unreviewed; 246 AA. AC A9A131; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 40. DE SubName: Full=UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:ABX11992.1}; GN OrderedLocusNames=Nmar_0092 {ECO:0000313|EMBL:ABX11992.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11992.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11992.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11992.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11992.1; -; Genomic_DNA. DR ProteinModelPortal; A9A131; -. DR STRING; 436308.Nmar_0092; -. DR EnsemblBacteria; ABX11992; ABX11992; Nmar_0092. DR KEGG; nmr:Nmar_0092; -. DR eggNOG; arCOG00252; Archaea. DR eggNOG; COG0677; LUCA. DR HOGENOM; HOG000106775; -. DR BioCyc; NMAR436308:GI3J-93-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 246 AA; 28322 MW; ED83205D615A7ADB CRC64; MSDIVLGMGE VGETLFGLLE ERNFDCVGID IESSKCKNYS ENDTIKNPEY LHICLPGELT EFVDITLSWI PKLKDLKAII VHSTVRPGTT KNIQEKSSVP VLFSPVRGVH RRFLDDIKKY TKFIASDNNE IDPDIKLDLE KRFQKVDWMS TTKTGELAKI LVDTSYYGWL INYAQITKMI CEKEGIDFDE MWKFADEIHE NLGNRPKMYP GIIGGHCVIP NLSLIEYENL DVIKKINEMY ENFKNN // ID A9A599_NITMS Unreviewed; 476 AA. AC A9A599; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 59. DE RecName: Full=Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; DE AltName: Full=Protein transport protein SEC61 subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01465}; GN Name=secY {ECO:0000256|HAMAP-Rule:MF_01465}; GN OrderedLocusNames=Nmar_0402 {ECO:0000313|EMBL:ABX12298.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12298.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12298.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12298.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: The central subunit of the protein translocation channel CC SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These CC two domains form a lateral gate at the front which open onto the CC bilayer between TMs 2 and 7, and are clamped together by SecE at CC the back. The channel is closed by both a pore ring composed of CC hydrophobic SecY resides and a short helix (helix 2A) on the CC extracellular side of the membrane which forms a plug. The plug CC probably moves laterally to allow the channel to open. The ring CC and the pore may move independently. {ECO:0000256|HAMAP- CC Rule:MF_01465, ECO:0000256|RuleBase:RU000537}. CC -!- SUBUNIT: Component of the Sec protein translocase complex. CC Heterotrimer consisting of alpha (SecY), beta (SecG) and gamma CC (SecE) subunits. The heterotrimers can form oligomers, although 1 CC heterotrimer is thought to be able to translocate proteins. CC Interacts with the ribosome. May interact with SecDF, and other CC proteins may be involved. {ECO:0000256|HAMAP-Rule:MF_01465}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_01465}; Multi-pass membrane protein {ECO:0000256|HAMAP- CC Rule:MF_01465}. CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU003484}; CC Multi-pass membrane protein {ECO:0000256|RuleBase:RU003484}. CC -!- SIMILARITY: Belongs to the SecY/SEC61-alpha family. CC {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU004349}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12298.1; -; Genomic_DNA. DR ProteinModelPortal; A9A599; -. DR STRING; 436308.Nmar_0402; -. DR EnsemblBacteria; ABX12298; ABX12298; Nmar_0402. DR KEGG; nmr:Nmar_0402; -. DR eggNOG; arCOG04169; Archaea. DR eggNOG; COG0201; LUCA. DR HOGENOM; HOG000231248; -. DR KO; K03076; -. DR OMA; RYIPYVT; -. DR BioCyc; NMAR436308:GI3J-419-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0065002; P:intracellular protein transmembrane transport; IEA:UniProtKB-HAMAP. DR GO; GO:0006605; P:protein targeting; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.3370.10; -; 1. DR HAMAP; MF_01465; SecY; 1. DR InterPro; IPR026593; SecY. DR InterPro; IPR002208; SecY/SEC61-alpha. DR InterPro; IPR030659; SecY_CS. DR InterPro; IPR023201; SecY_su_dom. DR InterPro; IPR019561; Translocon_Sec61/SecY_plug_dom. DR PANTHER; PTHR10906; PTHR10906; 1. DR Pfam; PF10559; Plug_translocon; 1. DR Pfam; PF00344; SecY; 1. DR PIRSF; PIRSF004557; SecY; 1. DR SUPFAM; SSF103491; SSF103491; 1. DR TIGRFAMs; TIGR00967; 3a0501s007; 1. DR PROSITE; PS00755; SECY_1; 1. DR PROSITE; PS00756; SECY_2; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_01465}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_01465}; KW Protein transport {ECO:0000256|HAMAP-Rule:MF_01465, KW ECO:0000256|RuleBase:RU003484}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Translocation {ECO:0000256|HAMAP-Rule:MF_01465, KW ECO:0000256|RuleBase:RU003484}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_01465}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_01465}; KW Transport {ECO:0000256|HAMAP-Rule:MF_01465, KW ECO:0000256|RuleBase:RU003484}. FT TRANSMEM 37 57 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 78 98 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 123 143 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 148 168 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 176 196 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 234 254 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 285 305 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 359 379 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 412 432 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT TRANSMEM 433 453 Helical. {ECO:0000256|HAMAP- FT Rule:MF_01465}. FT DOMAIN 45 78 Plug_translocon. FT {ECO:0000259|Pfam:PF10559}. SQ SEQUENCE 476 AA; 51419 MW; F5917900905C48F5 CRC64; MAEGTVTTII RKMVFKAEPY LPQVPKPKKK IPLSTRLLWC GVALLIYMVM GQTPLFGATT PEFDFLAFAR VIFASQQGTL VELGIGPIVT AGLLMQLLRG SDILKFDFKK PEERGVFQTA TKMVTYVVIV AESIVYGVAV YGPGVSDPSI LYVMVGQLMA ASIIIMFLDE LIQKGWGLGS GISLFIMAGV AQQILWSLFS PLPAGDGGTI GIIPYIGQSI MAGDLSNIMF RSNQLPSIFG LCLTAGVILI LVFTQGMKIE IPIVSTKYRG FSAVYPIKMM YVSNIPVILA SALTANAVFI FQMLWANANP RNNNFFMNFI AQFDPTSPST PIGGLIYYIT PPRGLDVAAL DPGRAVGYVL FMIGIVIVFG RLWVELGGLS PKSAAQNLLD ADVQIPGFRR SNKPVEALLN KYIPSVTIIG SAILGLLAGA SDVLGVFGSG IGVLLMVDIL INYYTQLVRE QVEVVMPRLG ALLGRK // ID A9A203_NITMS Unreviewed; 127 AA. AC A9A203; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 46. DE RecName: Full=30S ribosomal protein S8e {ECO:0000256|HAMAP-Rule:MF_00029}; GN Name=rps8e {ECO:0000256|HAMAP-Rule:MF_00029}; GN OrderedLocusNames=Nmar_0520 {ECO:0000313|EMBL:ABX12416.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12416.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12416.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12416.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBUNIT: Part of the 30S ribosomal subunit. {ECO:0000256|HAMAP- CC Rule:MF_00029}. CC -!- SIMILARITY: Belongs to the ribosomal protein S8e family. CC {ECO:0000256|HAMAP-Rule:MF_00029}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12416.1; -; Genomic_DNA. DR ProteinModelPortal; A9A203; -. DR STRING; 436308.Nmar_0520; -. DR EnsemblBacteria; ABX12416; ABX12416; Nmar_0520. DR KEGG; nmr:Nmar_0520; -. DR eggNOG; arCOG04154; Archaea. DR eggNOG; COG2007; LUCA. DR HOGENOM; HOG000108969; -. DR KO; K02995; -. DR OMA; DRYPNEA; -. DR BioCyc; NMAR436308:GI3J-541-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW. DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro. DR GO; GO:0006412; P:translation; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00029; Ribosomal_S8e; 1. DR InterPro; IPR020919; Ribosomal_protein_S8e_arc. DR InterPro; IPR001047; Ribosomal_S8e. DR InterPro; IPR022309; Ribosomal_S8e/biogenesis_NSA2. DR Pfam; PF01201; Ribosomal_S8e; 1. DR TIGRFAMs; TIGR00307; eS8; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Ribonucleoprotein {ECO:0000256|HAMAP-Rule:MF_00029, KW ECO:0000313|EMBL:ABX12416.1}; KW Ribosomal protein {ECO:0000256|HAMAP-Rule:MF_00029, KW ECO:0000313|EMBL:ABX12416.1}. SQ SEQUENCE 127 AA; 14106 MW; 8C5068031D779D2F CRC64; MRKSVENLAT SKTTGGRRHP LRIRRKYETD RYPNEAVTGA QVTVTRTVRG KNRKTAVKTI DFVNLATGDA KVKKAKILKV LDNTTNNDYK RRGIITKGAI LETQEGKCKV VSKPGQNGIV NAILVKE // ID A9A5T6_NITMS Unreviewed; 82 AA. AC A9A5T6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13091.1}; GN OrderedLocusNames=Nmar_1195 {ECO:0000313|EMBL:ABX13091.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13091.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13091.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13091.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13091.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13091; ABX13091; Nmar_1195. DR KEGG; nmr:Nmar_1195; -. DR eggNOG; arCOG10579; Archaea. DR eggNOG; ENOG41111E9; LUCA. DR BioCyc; NMAR436308:GI3J-1228-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 12 32 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 82 AA; 9290 MW; 09CB541CA1EBEC29 CRC64; MKDPHNHAKV GYSMIAVAAS LAVIGIMALF MADDVLYADN LQRDSTFHFN ECKANDFKTE GCEKYWDRIN NQISGIYVDL DE // ID A9A1L2_NITMS Unreviewed; 280 AA. AC A9A1L2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Lysine biosynthesis enzyme LysX {ECO:0000313|EMBL:ABX13191.1}; GN OrderedLocusNames=Nmar_1295 {ECO:0000313|EMBL:ABX13191.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13191.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13191.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13191.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13191.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1L2; -. DR STRING; 436308.Nmar_1295; -. DR EnsemblBacteria; ABX13191; ABX13191; Nmar_1295. DR KEGG; nmr:Nmar_1295; -. DR eggNOG; arCOG01589; Archaea. DR eggNOG; COG0189; LUCA. DR HOGENOM; HOG000228553; -. DR KO; K05827; -. DR OMA; WKTNMAL; -. DR BioCyc; NMAR436308:GI3J-1328-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0046872; F:metal ion binding; IEA:InterPro. DR GO; GO:0006464; P:cellular protein modification process; IEA:InterPro. DR GO; GO:0009085; P:lysine biosynthetic process; IEA:InterPro. DR Gene3D; 3.30.1490.20; -; 1. DR Gene3D; 3.30.470.20; -; 1. DR Gene3D; 3.40.50.20; -; 1. DR InterPro; IPR011761; ATP-grasp. DR InterPro; IPR013651; ATP-grasp_RimK-type. DR InterPro; IPR013815; ATP_grasp_subdomain_1. DR InterPro; IPR013816; ATP_grasp_subdomain_2. DR InterPro; IPR011870; LysX_arch. DR InterPro; IPR016185; PreATP-grasp_dom. DR InterPro; IPR004666; RpS6_RimK/Lys_biosynth_LsyX. DR Pfam; PF08443; RimK; 1. DR SUPFAM; SSF52440; SSF52440; 1. DR TIGRFAMs; TIGR02144; LysX_arch; 1. DR TIGRFAMs; TIGR00768; rimK_fam; 1. DR PROSITE; PS50975; ATP_GRASP; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 93 276 ATP-grasp. {ECO:0000259|PROSITE:PS50975}. SQ SEQUENCE 280 AA; 31347 MW; 8E1DA4FF9D6D05D3 CRC64; MSPDVTILYD TIRWEEKGLL EAGKKKNINI QMVDCKKLAV DLEKKPEDYG VVIQRCVSYY RNLHSTAALE GLGVKVINCL NTGIFAGNKL FTHMLLKKAG VPTPDATVAF SKDAALEALD TQGYPKVIKP TVGSWGRLIS KLNDKDSAEG VIESRENMYP IYQVHYLEEF VKRPPRDIRA IMVGDKIVAA IYRNSKHWKT NMALGGVAEP CEVTQEMEEM CIKAKHAVQG DIVGVDLMES EEKGLVVHEV NNTTEYKNTV RVCEVDIPSL MLDYALKIEK // ID A9A4M0_NITMS Unreviewed; 318 AA. AC A9A4M0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 36. DE SubName: Full=Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ABX12998.1}; GN OrderedLocusNames=Nmar_1102 {ECO:0000313|EMBL:ABX12998.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12998.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12998.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12998.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12998.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M0; -. DR STRING; 436308.Nmar_1102; -. DR EnsemblBacteria; ABX12998; ABX12998; Nmar_1102. DR KEGG; nmr:Nmar_1102; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; arCOG06255; Archaea. DR eggNOG; ENOG410XV93; LUCA. DR BioCyc; NMAR436308:GI3J-1133-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005507; F:copper ion binding; IEA:InterPro. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR002386; Amicyanin/Pseudoazurin. DR InterPro; IPR000923; BlueCu_1. DR InterPro; IPR008972; Cupredoxin. DR Pfam; PF00127; Copper-bind; 1. DR PRINTS; PR00155; AMICYANIN. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 241 318 Copper-bind. {ECO:0000259|Pfam:PF00127}. SQ SEQUENCE 318 AA; 34021 MW; 298FC120E078756A CRC64; MAGIDKAAIG FSIAIVAIGV AFAMYGDAAQ NAGPSVSTPA VRTTAPEPQM EEPVQADPFA DLADEVKAAS EKPKKSGWER ATSVQDPGIG HEEHQLAVLL APSENTYSGT LLYDASENIQ LVSLRGPIGD DENPSKIWTP DGETRFELTL VDPKNAKGEW EFSGNALAVH TFYTNTFVVD YKILDLVETE PMVMEAEDEM HVEDEMHVEE THEEEPAGPM THTVDMPAGT SVPGCEETNE CYIPANITIN AGDTVEFVNS DTAAHTVTGG SPADGPSGVF DSSLVMGGAS YSFTFEDAGT YDYFCMVHPW MVGSVTVN // ID A9A176_NITMS Unreviewed; 293 AA. AC A9A176; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12362.1}; GN OrderedLocusNames=Nmar_0466 {ECO:0000313|EMBL:ABX12362.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12362.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12362.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12362.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12362.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12362; ABX12362; Nmar_0466. DR KEGG; nmr:Nmar_0466; -. DR eggNOG; arCOG08732; Archaea. DR eggNOG; ENOG411114A; LUCA. DR OMA; CASFYLA; -. DR BioCyc; NMAR436308:GI3J-486-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 293 AA; 33377 MW; B0CF859B8664F5C3 CRC64; MDLQKIPEKL GLSDFPVGLG GCRISDHFFD SCGYDVVVFD EKDEPDKIVS IDNEMFVLHH GTFSETNSKK LLQYDNLKII QDASWDLRMF LSKIKEKHSA LFADYAKNSL IESMFCCQKA KESIDNSDDF APCWQKCASF YLADAITSLN NKRLGASHML DFLRKFAKSP INEHISVVTQ TVGIERATPV LLERMVKSTV GFSDMVEKNN HSQIIQKTHD YFVKNSMLSD CYFYLGYVNK ENFIKIKNTL SKNHDLIHVL KTAFDVEADL ELLKQQSDLI KKSCNAILEA ASK // ID A9A3F9_NITMS Unreviewed; 150 AA. AC A9A3F9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE RecName: Full=Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; DE Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; DE EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401}; DE AltName: Full=Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; GN Name=msrA {ECO:0000256|HAMAP-Rule:MF_01401}; GN OrderedLocusNames=Nmar_0995 {ECO:0000313|EMBL:ABX12891.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12891.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12891.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12891.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Has an important function as a repair enzyme for CC proteins that have been inactivated by oxidation. Catalyzes the CC reversible oxidation-reduction of methionine sulfoxide in proteins CC to methionine. {ECO:0000256|HAMAP-Rule:MF_01401}. CC -!- CATALYTIC ACTIVITY: L-methionine + thioredoxin disulfide + H(2)O = CC L-methionine (S)-S-oxide + thioredoxin. {ECO:0000256|HAMAP- CC Rule:MF_01401}. CC -!- CATALYTIC ACTIVITY: Peptide-L-methionine + thioredoxin disulfide + CC H(2)O = peptide-L-methionine (S)-S-oxide + thioredoxin. CC {ECO:0000256|HAMAP-Rule:MF_01401}. CC -!- SIMILARITY: Belongs to the MsrA Met sulfoxide reductase family. CC {ECO:0000256|HAMAP-Rule:MF_01401}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12891.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3F9; -. DR SMR; A9A3F9; 2-149. DR STRING; 436308.Nmar_0995; -. DR EnsemblBacteria; ABX12891; ABX12891; Nmar_0995. DR KEGG; nmr:Nmar_0995; -. DR eggNOG; arCOG02816; Archaea. DR eggNOG; COG0225; LUCA. DR HOGENOM; HOG000263863; -. DR KO; K07304; -. DR OMA; FWCVEAA; -. DR BioCyc; NMAR436308:GI3J-1023-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008113; F:peptide-methionine (S)-S-oxide reductase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006464; P:cellular protein modification process; IEA:UniProtKB-HAMAP. DR GO; GO:0030091; P:protein repair; IEA:InterPro. DR GO; GO:0006979; P:response to oxidative stress; IEA:InterPro. DR Gene3D; 3.30.1060.10; -; 1. DR HAMAP; MF_01401; MsrA; 1. DR InterPro; IPR028427; Met_Sox_Rdtase. DR InterPro; IPR002569; Met_Sox_Rdtase_MsrA. DR PANTHER; PTHR10173; PTHR10173; 1. DR Pfam; PF01625; PMSR; 1. DR SUPFAM; SSF55068; SSF55068; 1. DR TIGRFAMs; TIGR00401; msrA; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01401, KW ECO:0000313|EMBL:ABX12891.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 148 PMSR. {ECO:0000259|Pfam:PF01625}. FT ACT_SITE 9 9 {ECO:0000256|HAMAP-Rule:MF_01401}. SQ SEQUENCE 150 AA; 17106 MW; 43BFA0D7DD94E38C CRC64; MKATFGAGCF WHVEDLLSKT KGVKSTQVGY IGGNLPNPTY EEVCTDRTGH AEAVEVEYDP NEISYEELLD VFWNNHNPTT LNRQGPDVGI QYRSAIFYHD EKQKEVAEKS KTQLDSSGKF NDPIVTEITP APTFYKAEEY HQKYFKKNGF // ID A9A167_NITMS Unreviewed; 87 AA. AC A9A167; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12353.1}; GN OrderedLocusNames=Nmar_0457 {ECO:0000313|EMBL:ABX12353.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12353.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12353.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12353.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12353.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0457; -. DR EnsemblBacteria; ABX12353; ABX12353; Nmar_0457. DR KEGG; nmr:Nmar_0457; -. DR BioCyc; NMAR436308:GI3J-476-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 87 AA; 9180 MW; 6549E49DEFE14408 CRC64; MMNSRTGIFV GLAIAVSVGI AFAASYSSVN TSDSEKFESV VDMTVEPSSP HIDDGALVGI ENENYAVNED GKRHYTLVAE TSPVVSP // ID A9A5T0_NITMS Unreviewed; 114 AA. AC A9A5T0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13085.1}; GN OrderedLocusNames=Nmar_1189 {ECO:0000313|EMBL:ABX13085.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13085.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13085.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13085.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13085.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1189; -. DR EnsemblBacteria; ABX13085; ABX13085; Nmar_1189. DR KEGG; nmr:Nmar_1189; -. DR eggNOG; arCOG08691; Archaea. DR eggNOG; ENOG41111BX; LUCA. DR HOGENOM; HOG000106565; -. DR OMA; YYISEAG; -. DR BioCyc; NMAR436308:GI3J-1222-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 114 AA; 13118 MW; EFA58F336212A9D2 CRC64; MAISKENKEF IDSLIDYYIN ESEAYTQIAE NFVPEIESVP DTTFGIITGC VYSGFLQAYQ NQQQTPSLED MKEFNEIIKK RAALIKKAII EPTVIEKTED IQEESKNEIK DDEK // ID A9A534_NITMS Unreviewed; 363 AA. AC A9A534; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11943.1}; GN OrderedLocusNames=Nmar_0043 {ECO:0000313|EMBL:ABX11943.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11943.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11943.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11943.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11943.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0043; -. DR EnsemblBacteria; ABX11943; ABX11943; Nmar_0043. DR KEGG; nmr:Nmar_0043; -. DR eggNOG; arCOG00899; Archaea. DR eggNOG; COG0392; LUCA. DR HOGENOM; HOG000110576; -. DR KO; K07027; -. DR OMA; AWRIATY; -. DR BioCyc; NMAR436308:GI3J-43-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR022791; L-PG_synthase/AglD. DR Pfam; PF03706; LPG_synthase_TM; 1. DR TIGRFAMs; TIGR00374; TIGR00374; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 28 47 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 75 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 106 125 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 137 161 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 167 190 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 244 274 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 335 354 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 363 AA; 40060 MW; 66FEDD5FE5F9977E CRC64; MVLGVKTLLN RFCQLSYLIL QRNHQMNWRL AAIPATLIPI IIIAIQFDIK PEDVLAIGFF PFVGAVVAMM IKLGLQGVKF AYIARRYLGN FDSVLKLTGV RVGSEFIKFT TPMFIGAEFI VIYYLHKKGV KPSKSTWIAI MDIVTEVFAA GLLSIMAGII ALLNGAYVVA AVVLGTSITV TTLWMVLFFL SSKRTFQVPK VLGKLAQRFG KEKGTKYIEQ TNSWMEEVCT MSRENLKTSE SKKVFTISFL FSIASWSFYG ISFMIIAMGT GYVINAFDSI MAVMGANAIG NLPITIGGSG LAEFGIVAYL NNLNPFDFDA SQGGLAWDAV IGWRIATYYV PIVITWLLLV KLALSRISKP QAT // ID A9A538_NITMS Unreviewed; 411 AA. AC A9A538; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11947.1}; GN OrderedLocusNames=Nmar_0047 {ECO:0000313|EMBL:ABX11947.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11947.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11947.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11947.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11947.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0047; -. DR EnsemblBacteria; ABX11947; ABX11947; Nmar_0047. DR KEGG; nmr:Nmar_0047; -. DR eggNOG; arCOG01393; Archaea. DR eggNOG; COG1819; LUCA. DR HOGENOM; HOG000110598; -. DR OMA; VNGSHTV; -. DR BioCyc; NMAR436308:GI3J-47-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 411 AA; 47345 MW; 3B6EC8DE41176816 CRC64; MLKIGEFIYP WGSGHYSRMM RLNEVLGDHI KEDFEVHFSS KDHVYEKLLK KFPDEREKIH EILMPTPIDG KFGPSVSMSL MNLLLPISKN PPLVRQIANY LREERKLYNK EKFDLVINDG DMGSNILAKN RNIPSLFITN QFRPRLYNSR SYLYPSLIFV AKQIQKASKI LVADSPPPYT MCEYNLNVIE EAEEKVTYVG HFTNSKKIEK TDSSDLEKLI ENDEFGYWMR TGNKSTNDGT GQRYEEVFHK EEMKTEKRII SHARNDPNID SVIGKDGKRY SISDALEKKI DWIQIDIGFL SEQEKDTVLD LCKYAVVNGS HTVMGEIMGG KTKPIIGIPI YDEHTNNIKW AEEKNLGILA TKTKQVIEGI SKIRANYERF EESLNEFSKN FVPNGAENSA KIAAQTLEEK R // ID A9A649_NITMS Unreviewed; 387 AA. AC A9A649; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Propanoyl-CoA C-acyltransferase {ECO:0000313|EMBL:ABX13527.1}; DE EC=2.3.1.176 {ECO:0000313|EMBL:ABX13527.1}; GN OrderedLocusNames=Nmar_1631 {ECO:0000313|EMBL:ABX13527.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13527.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13527.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13527.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the thiolase family. CC {ECO:0000256|RuleBase:RU003557}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13527.1; -; Genomic_DNA. DR ProteinModelPortal; A9A649; -. DR STRING; 436308.Nmar_1631; -. DR EnsemblBacteria; ABX13527; ABX13527; Nmar_1631. DR KEGG; nmr:Nmar_1631; -. DR eggNOG; arCOG01278; Archaea. DR eggNOG; COG0183; LUCA. DR HOGENOM; HOG000221739; -. DR KO; K00626; -. DR OMA; PYAQFRT; -. DR BioCyc; NMAR436308:GI3J-1676-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033814; F:propanoyl-CoA C-acyltransferase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.47.10; -; 4. DR InterPro; IPR002155; Thiolase. DR InterPro; IPR016039; Thiolase-like. DR InterPro; IPR020617; Thiolase_C. DR InterPro; IPR020616; Thiolase_N. DR Pfam; PF02803; Thiolase_C; 1. DR Pfam; PF00108; Thiolase_N; 1. DR PIRSF; PIRSF000429; Ac-CoA_Ac_transf; 1. DR SUPFAM; SSF53901; SSF53901; 2. PE 3: Inferred from homology; KW Acyltransferase {ECO:0000313|EMBL:ABX13527.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX13527.1}. FT DOMAIN 9 224 Thiolase_N. {ECO:0000259|Pfam:PF00108}. FT DOMAIN 254 361 Thiolase_C. {ECO:0000259|Pfam:PF02803}. SQ SEQUENCE 387 AA; 40686 MW; 1C6A06955F456405 CRC64; MTFVEKVCVL GAGSTKYGKL ADSIADITTQ ASVAAIESAG ISPKEIKASY ISNVFGVADK QVHIGPVLMS RLGIPDKPSL TIESACGSGS VSFREAYANV AAGFYDCLLV TGVEKVTHTG TEWTTTYFAY CSDFFYEGQA GASFPGLFAS MARAYMTEFN TTEEDFARVA VKNHDNGVLN PKAHMQKKIT IDDVLNSAVV ASPLKLFDCC PFSDGASSVI LCSEKFAKEH GGDYVECIGS GRGGSPAALQ GRDHMTTIPS TKLAAADAYK MAGITAKDVD FAEVHDCFTI AEVVDTEDLG FFEKGKGVEA VREGRTALNS DISINPSGGL KSKGHPIGAT GVGQVVEVYD QLTGNAGERT VKDAKIGLTH NFGATGASCA VHVFQSV // ID A9A1A5_NITMS Unreviewed; 466 AA. AC A9A1A5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 42. DE SubName: Full=FeS assembly protein SufB {ECO:0000313|EMBL:ABX12391.1}; GN OrderedLocusNames=Nmar_0495 {ECO:0000313|EMBL:ABX12391.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12391.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12391.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12391.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12391.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0495; -. DR EnsemblBacteria; ABX12391; ABX12391; Nmar_0495. DR KEGG; nmr:Nmar_0495; -. DR eggNOG; arCOG01715; Archaea. DR eggNOG; COG0719; LUCA. DR HOGENOM; HOG000069112; -. DR KO; K09014; -. DR OMA; YPYVDVR; -. DR BioCyc; NMAR436308:GI3J-515-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016226; P:iron-sulfur cluster assembly; IEA:InterPro. DR InterPro; IPR010231; SUF_FeS_clus_asmbl_SufB. DR InterPro; IPR000825; SUF_FeS_clus_asmbl_SufBD. DR Pfam; PF01458; UPF0051; 1. DR TIGRFAMs; TIGR01980; sufB; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 466 AA; 52588 MW; 756291C7A4138887 CRC64; MATENLDMDY SKYDFKDSTE MYVHLSKKGL TKETVIEISK MKDEPQWMLD FRLRSYEVFM KKPMPTWGGD LSLIDFQNIY YYAKASEKTE KNWDDVPEDV KNTFDKLGIP EAEKKFLAGV GAQYESEVVY HSLREDLAKQ GVLFLDTDAA LKEHPELFKK YFGKVIPPED NKFAALNSAV WSGGSFIYVP PGVKVDMPLQ AYFRINAENI GQFERTLIVV DEGADVHYIE GCTAPVYSSE SLHSAVVELV AHKDAHLRYT TIQNWSNDVY NLVTKRAYAY EGATVEWIDG NIGSKLTMKY PGVYLMGERA YGETLSIAFA GKGQHQDTGA KMVHMAPNTT SKITSKSVSR LDGRSTYRGL LNVAKGATNV KSTVRCDALL LDDTSKTDTY PYMEINQEDA TITHEATVGK IGDEQIFYLM SRGFSEEEAL SLIVNGFMEP FTKELPMEYA VELNRLIKLE MDDSVG // ID A9A3G1_NITMS Unreviewed; 282 AA. AC A9A3G1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 39. DE SubName: Full=Methyltransferase type 11 {ECO:0000313|EMBL:ABX12893.1}; GN OrderedLocusNames=Nmar_0997 {ECO:0000313|EMBL:ABX12893.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12893.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12893.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12893.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12893.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3G1; -. DR STRING; 436308.Nmar_0997; -. DR EnsemblBacteria; ABX12893; ABX12893; Nmar_0997. DR KEGG; nmr:Nmar_0997; -. DR eggNOG; ENOG4102TRY; Archaea. DR eggNOG; ENOG410XVJJ; LUCA. DR HOGENOM; HOG000107555; -. DR OMA; IACESAQ; -. DR BioCyc; NMAR436308:GI3J-1025-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.150; -; 1. DR InterPro; IPR013216; Methyltransf_11. DR InterPro; IPR029063; SAM-dependent_MTases. DR Pfam; PF08241; Methyltransf_11; 1. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Methyltransferase {ECO:0000313|EMBL:ABX12893.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12893.1}. FT DOMAIN 81 172 Methyltransf_11. FT {ECO:0000259|Pfam:PF08241}. SQ SEQUENCE 282 AA; 31946 MW; D04ADE8FE4BD21B7 CRC64; MNLFLVSINP LELFLWTFRR NEKDTVNLYN TLSPVMQLAT GGSMLNFGYW SQEHSEPISA QENLCMVFAE LAELSSAKHV VDVGSGLSAP SHLWQQEFPH ILLYDVNINY SQLSFGKKQK IEFLNSSSTK LPFTNNSVDR VLALESAQHF KPLSEFVSES KRVLTDSGLL VIAIPITLGN SSLKDLGMLK FTWSSEHYSL DDVKNTLNSG GFEINHEKLI GNSVYDPLAD YYLKNREELK KSILEKYPNY VENILYKSII KMKTASEKGI IDYALLKCTL KI // ID A9A246_NITMS Unreviewed; 272 AA. AC A9A246; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12459.1}; GN OrderedLocusNames=Nmar_0563 {ECO:0000313|EMBL:ABX12459.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12459.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12459.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12459.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12459.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0563; -. DR EnsemblBacteria; ABX12459; ABX12459; Nmar_0563. DR KEGG; nmr:Nmar_0563; -. DR eggNOG; arCOG00910; Archaea. DR eggNOG; COG2263; LUCA. DR HOGENOM; HOG000105705; -. DR BioCyc; NMAR436308:GI3J-585-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR029063; SAM-dependent_MTases. DR SUPFAM; SSF53335; SSF53335; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 272 AA; 30616 MW; 7E07723183E6DC8E CRC64; MIVQLAQNLV SLKKEFAKNY SGKSQMQEVI PISTSESFQI KQQDLELLHQ FATKNPIYYN SYEDVVNDTK CIVYEGDINR YWLNSIQHGS SNAPFSPTWI MSAYVAALMT KELGYFEIVD IGSGDGRIAF CAKVLDMEAY SIELDEQLVD LQKLLVTTLD FHPFCSDATT FDYTSLNLNN PAFFIGGLAQ MGGVALATGV IEKIMSQEFW KQSGWVFAGT LSQKYAPDPK NEAGWGTLIE SNKLHKLQTI PLPTVWTFHE TDETPYIFAE PL // ID A9A5L1_NITMS Unreviewed; 97 AA. AC A9A5L1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12722.1}; GN OrderedLocusNames=Nmar_0826 {ECO:0000313|EMBL:ABX12722.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12722.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12722.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12722.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12722.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0826; -. DR EnsemblBacteria; ABX12722; ABX12722; Nmar_0826. DR KEGG; nmr:Nmar_0826; -. DR eggNOG; arCOG10551; Archaea. DR eggNOG; ENOG41111HU; LUCA. DR BioCyc; NMAR436308:GI3J-853-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 6 23 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 97 AA; 11544 MW; 9299525A337825B1 CRC64; MASVIIIPII IVAVVGLTGY LVYKYAMYDF MCKRSVNQTL QKYNIQKTPS QIIKEYYEEK GEKKSDKEIQ NLEKHYRQKE PDQFLAMYDV IREKQNN // ID A9A542_NITMS Unreviewed; 221 AA. AC A9A542; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 35. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11951.1}; GN OrderedLocusNames=Nmar_0051 {ECO:0000313|EMBL:ABX11951.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11951.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11951.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11951.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11951.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0051; -. DR EnsemblBacteria; ABX11951; ABX11951; Nmar_0051. DR KEGG; nmr:Nmar_0051; -. DR eggNOG; arCOG08818; Archaea. DR eggNOG; ENOG41111BQ; LUCA. DR HOGENOM; HOG000110621; -. DR OMA; IFITPAF; -. DR BioCyc; NMAR436308:GI3J-51-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 195 216 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 221 AA; 24130 MW; BE2D7722BB7CE9FB CRC64; MRYLFAAILL SGIFITPAFA QEVNPSLIID EIEIPAQEFN RVLRDAPVVP LDEIHAVSWQ VTIDNNLLYA NPDGNAVFRL YDANSEDEFI EVGMGSIPDN KFWVAVQTPK EGYIVVHSDL ERGWYPEAKS IISFTDRAGL TVNNGARIVV TNLDIGEFAI GSYSVHGMEG STDPPAANSG SLILEFLSGD PSKNAFAMFP FYVAAGIGVI VGVLFLTKKR S // ID A9A3U2_NITMS Unreviewed; 94 AA. AC A9A3U2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13354.1}; GN OrderedLocusNames=Nmar_1458 {ECO:0000313|EMBL:ABX13354.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13354.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13354.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13354.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13354.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1458; -. DR EnsemblBacteria; ABX13354; ABX13354; Nmar_1458. DR KEGG; nmr:Nmar_1458; -. DR BioCyc; NMAR436308:GI3J-1495-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 94 AA; 10283 MW; C86B9E471533760C CRC64; MTRTNSKKSV ALTAIMALVV MMALGITDVF GDHEADVLVH EFGELLEGVE AEILKIPNDT GSPINTSDTM QTEMILSQIA YLEAFDEVIR SQIL // ID A9A5V1_NITMS Unreviewed; 434 AA. AC A9A5V1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABX13106.1}; GN OrderedLocusNames=Nmar_1210 {ECO:0000313|EMBL:ABX13106.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13106.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13106.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13106.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13106.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5V1; -. DR STRING; 436308.Nmar_1210; -. DR EnsemblBacteria; ABX13106; ABX13106; Nmar_1210. DR KEGG; nmr:Nmar_1210; -. DR eggNOG; arCOG04430; Archaea. DR eggNOG; COG1078; LUCA. DR HOGENOM; HOG000023872; -. DR KO; K06885; -. DR OMA; ARYLMYT; -. DR BioCyc; NMAR436308:GI3J-1243-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR Gene3D; 1.10.3210.10; -; 1. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR006674; HD_domain. DR Pfam; PF01966; HD; 1. DR SMART; SM00471; HDc; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX13106.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 53 187 HDc. {ECO:0000259|SMART:SM00471}. SQ SEQUENCE 434 AA; 49820 MW; F6743842D09B9426 CRC64; MSKIDFKYKS IRDPLYGFID ISKTEQQVID SSPFRRLLNI KQLSHAFVVY PTAIHTRFEH SLGATHLAGK VCDQLNFDDT TKEIVRLAAL LHDVGHGPYS HLFESVISNV NENKIDHEWI SMLIISKNPE LQSILGDKSQ KIIQLLDHKP VSDWDSGLST LASDVISSAL DVDKMDYLRR DSYHIGVAYG QFDLARIIHT ITSTETDEQR ICIQDKGKDS IENYRLGRYL MHAQVYQHHA RLTADQMFLR ALDLATNEEE IIPIDKLKAD NSTLNGNDEF LEYYLKLNDK TIYDEIINTK PDSKSARILK NIQKRNLLKR ACEILPDKEI ENAIIRDQVM KMDYSKLKQF AAEMSQSLGL EYSDTIAYLS KIPVGLYDGE ILVLWKNIPR KLDDFSPITV KNSAIERFFV FGDSNKDNMN AIETYVKNKF GMDN // ID A9A198_NITMS Unreviewed; 132 AA. AC A9A198; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 50. DE SubName: Full=Protein tyrosine phosphatase {ECO:0000313|EMBL:ABX12384.1}; GN OrderedLocusNames=Nmar_0488 {ECO:0000313|EMBL:ABX12384.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12384.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12384.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12384.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12384.1; -; Genomic_DNA. DR ProteinModelPortal; A9A198; -. DR STRING; 436308.Nmar_0488; -. DR EnsemblBacteria; ABX12384; ABX12384; Nmar_0488. DR KEGG; nmr:Nmar_0488; -. DR eggNOG; arCOG04425; Archaea. DR eggNOG; COG0394; LUCA. DR HOGENOM; HOG000273093; -. DR OMA; FICVANS; -. DR BioCyc; NMAR436308:GI3J-508-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR023485; Ptyr_pPase_SF. DR Pfam; PF01451; LMWPc; 1. DR SMART; SM00226; LMWPc; 1. DR SUPFAM; SSF52788; SSF52788; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 129 LMWPc. {ECO:0000259|SMART:SM00226}. SQ SEQUENCE 132 AA; 14832 MW; C18EFFACC5D81AA3 CRC64; MENVLFVCVE NAGRSQMAEA FFRKYGPAKY NVISAGTTPS SQLNPVVVEV MKEVGIDMTQ QSPKTLSNEM IENSSKTINM GCMDKESCPA LFVKDVLDWN ILDPKEKSID DVREIRDQIL KEVLDLVKSL EE // ID A9A3K3_NITMS Unreviewed; 178 AA. AC A9A3K3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 53. DE SubName: Full=tRNA intron endonuclease {ECO:0000313|EMBL:ABX12935.1}; GN OrderedLocusNames=Nmar_1039 {ECO:0000313|EMBL:ABX12935.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12935.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12935.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12935.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12935.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3K3; -. DR STRING; 436308.Nmar_1039; -. DR EnsemblBacteria; ABX12935; ABX12935; Nmar_1039. DR KEGG; nmr:Nmar_1039; -. DR eggNOG; arCOG01701; Archaea. DR eggNOG; COG1676; LUCA. DR HOGENOM; HOG000107823; -. DR KO; K01170; -. DR OMA; GIDHAPM; -. DR BioCyc; NMAR436308:GI3J-1070-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro. DR GO; GO:0000213; F:tRNA-intron endonuclease activity; IEA:InterPro. DR GO; GO:0006388; P:tRNA splicing, via endonucleolytic cleavage and ligation; IEA:InterPro. DR Gene3D; 3.40.1350.10; -; 1. DR InterPro; IPR011856; tRNA_endonuc-like_dom. DR InterPro; IPR006677; tRNA_intron_Endonuc_cat-like. DR InterPro; IPR006678; tRNA_intron_Endonuc_N. DR InterPro; IPR006676; tRNA_splic. DR InterPro; IPR016442; tRNA_splic_arch_short. DR PANTHER; PTHR21227; PTHR21227; 1. DR Pfam; PF01974; tRNA_int_endo; 1. DR Pfam; PF02778; tRNA_int_endo_N; 1. DR PIRSF; PIRSF005285; tRNA_splic_archaea; 1. DR SUPFAM; SSF53032; SSF53032; 1. DR SUPFAM; SSF55267; SSF55267; 1. DR TIGRFAMs; TIGR00324; endA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Endonuclease {ECO:0000313|EMBL:ABX12935.1}; KW Hydrolase {ECO:0000313|EMBL:ABX12935.1}; KW Nuclease {ECO:0000313|EMBL:ABX12935.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 1 75 tRNA_int_endo_N. FT {ECO:0000259|Pfam:PF02778}. FT DOMAIN 86 169 tRNA_int_endo. FT {ECO:0000259|Pfam:PF01974}. SQ SEQUENCE 178 AA; 20283 MW; B225F5744967E6BA CRC64; MKGELIENRV IVWNIEDSRK LFGGGYYGKP IGIPKPKIEE IDAPLVLDLI ESLYLLENKK ISISKSKHKV TVEQMIDICK NEHHDFDKKY LVYKNFRDKG YIINPGIKFG CDFAVYEKGP GIDHAPFLIQ VYNRSEPITS TGIVLAGRLA TSVKKQFILA IPKGKDNVDF LALDWWKA // ID A9A5S5_NITMS Unreviewed; 96 AA. AC A9A5S5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13080.1}; GN OrderedLocusNames=Nmar_1184 {ECO:0000313|EMBL:ABX13080.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13080.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13080.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13080.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13080.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1184; -. DR EnsemblBacteria; ABX13080; ABX13080; Nmar_1184. DR KEGG; nmr:Nmar_1184; -. DR eggNOG; arCOG08688; Archaea. DR eggNOG; ENOG41111NM; LUCA. DR HOGENOM; HOG000106532; -. DR OMA; METIEYE; -. DR BioCyc; NMAR436308:GI3J-1217-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 96 AA; 11192 MW; 57EEC479B447DAA3 CRC64; MQKIDYEAPV WVLNYNNPKP LLDHAIHMLE RHGVKREDME ITETPTAKIG SIVVEIWPYE LVIGRVRSTR NDSFISGTEF TIELKLDENG NYIDYL // ID A9A3U0_NITMS Unreviewed; 334 AA. AC A9A3U0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13352.1}; GN OrderedLocusNames=Nmar_1456 {ECO:0000313|EMBL:ABX13352.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13352.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13352.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13352.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13352.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1456; -. DR EnsemblBacteria; ABX13352; ABX13352; Nmar_1456. DR KEGG; nmr:Nmar_1456; -. DR eggNOG; arCOG08670; Archaea. DR eggNOG; arCOG08728; Archaea. DR eggNOG; ENOG4111Q03; LUCA. DR BioCyc; NMAR436308:GI3J-1493-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR019545; DM13_domain. DR Pfam; PF10517; DM13; 1. DR PROSITE; PS51549; DM13; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 234 334 DM13. {ECO:0000259|PROSITE:PS51549}. SQ SEQUENCE 334 AA; 37352 MW; 6CB3BB44CD24E2A0 CRC64; MIKSVLFLVV VLFSSNVMIL DSYQTHISSP IITSEKFNYK QGEDIVISGW VNYNDEATSD VLLRVTAATP NGIKIFDDYT TSNADGEFSI SIPIPVDAET GNYFLQVISQ CREIHRQVCT HQYESLSISV EGVPNQIPEW IKNNVEWWAD GIIGDQEFVR GIEFLINQGI LVVPPTVISD EQSDEIPDWI KNNGKWWTEG IISDDEFLNN IQFLIANGIL SVPSAVLEPQ TFSGQFHDAD FIHRVSGTAS IEFTPDQGGT LHFDETFDTT HGPDLYVYLA TDKSANDFVS VGQIQSFGGE QSYIIPSDVD LTKYDNVLIW CQAFSTLFGH AELE // ID A9A525_NITMS Unreviewed; 335 AA. AC A9A525; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11934.1}; GN OrderedLocusNames=Nmar_0034 {ECO:0000313|EMBL:ABX11934.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11934.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11934.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11934.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11934.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0034; -. DR EnsemblBacteria; ABX11934; ABX11934; Nmar_0034. DR KEGG; nmr:Nmar_0034; -. DR eggNOG; arCOG00374; Archaea. DR eggNOG; COG2512; LUCA. DR HOGENOM; HOG000110520; -. DR OMA; QGLVRVY; -. DR BioCyc; NMAR436308:GI3J-34-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR011991; WHTH_DNA-bd_dom. DR SUPFAM; SSF46785; SSF46785; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 210 230 Helical. {ECO:0000256|SAM:Phobius}. FT COILED 314 335 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 335 AA; 37270 MW; ED47FC4F98992C61 CRC64; MNPQIVPIHR TESREDGMLF VRTDGIIDTM VNAPLIVAGL LVVALTIPLQ TSFATTRTLD LIINSDGSTH ISSQIDVDSS NFELSLFGPS IDNFVAIGSD GTTLSGEVIE DKAMIQTSDH SSITVNYDIH DLISKEGRIW TFSFDSPTNY SLLMPENSVI VGMNILPENM EQLDSQIKLD ISPGSAQIDY IFSTPVETPT TPPEFSFDSV TIGLIVGPIA AAIIASVIVV KKRQSKPQLQ TEIIQDIPKP TTDSLTPDTI FNLRPDMRED DKEIVKFISE NGGEVFESEL RKKFLQPRTT MWRAVKRLER LGVVEIYKKD LLNMVKLRND LEEEN // ID A9A124_NITMS Unreviewed; 388 AA. AC A9A124; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 54. DE SubName: Full=Methionine adenosyltransferase {ECO:0000313|EMBL:ABX11985.1}; DE EC=2.5.1.6 {ECO:0000313|EMBL:ABX11985.1}; GN OrderedLocusNames=Nmar_0085 {ECO:0000313|EMBL:ABX11985.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11985.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11985.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11985.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11985.1; -; Genomic_DNA. DR ProteinModelPortal; A9A124; -. DR SMR; A9A124; 6-388. DR STRING; 436308.Nmar_0085; -. DR PRIDE; A9A124; -. DR EnsemblBacteria; ABX11985; ABX11985; Nmar_0085. DR KEGG; nmr:Nmar_0085; -. DR eggNOG; arCOG07444; Archaea. DR eggNOG; COG0192; LUCA. DR HOGENOM; HOG000245710; -. DR KO; K00789; -. DR OMA; DNFLAFD; -. DR BioCyc; NMAR436308:GI3J-86-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0004478; F:methionine adenosyltransferase activity; IEA:UniProtKB-EC. DR GO; GO:0006556; P:S-adenosylmethionine biosynthetic process; IEA:InterPro. DR HAMAP; MF_00086; S_AdoMet_synth1; 1. DR InterPro; IPR022631; ADOMET_SYNTHASE_CS. DR InterPro; IPR022630; S-AdoMet_synt_C. DR InterPro; IPR022629; S-AdoMet_synt_central. DR InterPro; IPR022628; S-AdoMet_synt_N. DR InterPro; IPR002133; S-AdoMet_synthetase. DR InterPro; IPR022636; S-AdoMet_synthetase_sfam. DR PANTHER; PTHR11964; PTHR11964; 1. DR Pfam; PF02773; S-AdoMet_synt_C; 1. DR Pfam; PF02772; S-AdoMet_synt_M; 1. DR Pfam; PF00438; S-AdoMet_synt_N; 1. DR PIRSF; PIRSF000497; MAT; 1. DR SUPFAM; SSF55973; SSF55973; 3. DR TIGRFAMs; TIGR01034; metK; 1. DR PROSITE; PS00376; ADOMET_SYNTHASE_1; 1. DR PROSITE; PS00377; ADOMET_SYNTHASE_2; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX11985.1}. FT DOMAIN 4 105 S-AdoMet_synt_N. FT {ECO:0000259|Pfam:PF00438}. FT DOMAIN 118 234 S-AdoMet_synt_M. FT {ECO:0000259|Pfam:PF02772}. FT DOMAIN 236 375 S-AdoMet_synt_C. FT {ECO:0000259|Pfam:PF02773}. SQ SEQUENCE 388 AA; 42916 MW; 7E22CBAF16DE2B39 CRC64; MTNNFLFTSE SVTEGHPDKV CDNISDAFLD EFLKQDPDSR VAVETMVTTD FVAVSGEVTS KANLDKKAQE ELVRKTIREI GYDNKDLMFD ADTCQVNLRL HSQSPDISQG VTATEEKEQG AGDQGLMFGY ATNETQEFMP MPILLAHKLI QKLSEVRRDK TLPWVRPDGK SQVSVRYEDN KPTGIETVVV STQHAPEISQ EEIKNEIIDK VIKPVLGDLW NDNIKIHINP TGKFVIGGPH GDAGLTGRKI IVDTYGGFGR HGGGAFSGKD PSKVDRSACY MCRYIAKNLV AAGLADRCEV QLAYAIGVAE PVSLYVNTFG TNKIPENQIE DLVRKNFDMK PSGIVSQLDL KRPIYKKTAS YGHFGRNEPE FGWEKTNKVD ALKQGAGL // ID A9A3F2_NITMS Unreviewed; 135 AA. AC A9A3F2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Phosphoribosyltransferase-like protein {ECO:0000313|EMBL:ABX12884.1}; GN OrderedLocusNames=Nmar_0988 {ECO:0000313|EMBL:ABX12884.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12884.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12884.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12884.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12884.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3F2; -. DR STRING; 436308.Nmar_0988; -. DR EnsemblBacteria; ABX12884; ABX12884; Nmar_0988. DR KEGG; nmr:Nmar_0988; -. DR eggNOG; arCOG00040; Archaea. DR eggNOG; COG2236; LUCA. DR KO; K07101; -. DR BioCyc; NMAR436308:GI3J-1016-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016757; F:transferase activity, transferring glycosyl groups; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.2020; -; 1. DR InterPro; IPR029057; PRTase-like. DR SUPFAM; SSF53271; SSF53271; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Glycosyltransferase {ECO:0000313|EMBL:ABX12884.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12884.1}. SQ SEQUENCE 135 AA; 15515 MW; FB025EE311A892E5 CRC64; MLSQDVDWSE IESIVKRLSN KIAKLPRTFS SITTVSRGGL VPARLIADNL GIKKIFVDKR KIDSNSLFVD DIYDTGDTFN EIIQLVDIPS KLVFVTLFAR RGQKYPKQLL YGKKTNNNAY VVFPWDKLEF ERSQK // ID A9A3W3_NITMS Unreviewed; 384 AA. AC A9A3W3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 42. DE SubName: Full=Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:ABX13663.1}; GN OrderedLocusNames=Nmar_1767 {ECO:0000313|EMBL:ABX13663.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13663.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13663.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13663.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13663.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3W3; -. DR STRING; 436308.Nmar_1767; -. DR EnsemblBacteria; ABX13663; ABX13663; Nmar_1767. DR KEGG; nmr:Nmar_1767; -. DR eggNOG; arCOG02846; Archaea. DR eggNOG; COG0484; LUCA. DR HOGENOM; HOG000107522; -. DR OMA; RNTIIAR; -. DR BioCyc; NMAR436308:GI3J-1814-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 1.10.287.110; -; 1. DR InterPro; IPR001623; DnaJ_domain. DR Pfam; PF00226; DnaJ; 1. DR PRINTS; PR00625; JDOMAIN. DR SMART; SM00271; DnaJ; 1. DR SUPFAM; SSF46565; SSF46565; 1. DR PROSITE; PS50076; DNAJ_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Stress response {ECO:0000313|EMBL:ABX13663.1}. FT DOMAIN 4 77 J. {ECO:0000259|PROSITE:PS50076}. SQ SEQUENCE 384 AA; 43171 MW; B579F16F05C23B94 CRC64; MVESNYDILG IVEGTTEKEI RDAFRRLALQ YHSDRGGENE QFIKIKQAYE DLKIGKKYPE TDIEKIKNSR VYSDESEADV RRKNQILGQQ LSKEMKTAEE WAAAHNRANS TGTRLFGSKT LGEIELERKA NGALSIKGNF MAGSLTYDGP ITMQGSITSP SWTREFQTNI HLTKGDFKFF DPVENKYKIE NGAQITVDNG NVVVGNIFGR KFRVEDPDGK VGVYKILEHR TSISAPNGKI IAENVVNTVS LDADTVIVLN VEDDVRISAR EVLFYGGKLT YDSVIKLKEG GSIRFFENFS IQGLSGDAKI ELENGKKIRL FDLKTKKIKD LADEFVPNKE NYTNDATMVG HGFTITYDML NNLSKKPTKK QKSGWASRFG FSKN // ID A9A568_NITMS Unreviewed; 410 AA. AC A9A568; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:ABX12267.1}; GN OrderedLocusNames=Nmar_0371 {ECO:0000313|EMBL:ABX12267.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12267.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12267.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12267.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12267.1; -; Genomic_DNA. DR ProteinModelPortal; A9A568; -. DR STRING; 436308.Nmar_0371; -. DR EnsemblBacteria; ABX12267; ABX12267; Nmar_0371. DR KEGG; nmr:Nmar_0371; -. DR eggNOG; arCOG02796; Archaea. DR eggNOG; COG2133; LUCA. DR HOGENOM; HOG000246901; -. DR OMA; GGNYGWD; -. DR BioCyc; NMAR436308:GI3J-387-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016901; F:oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor; IEA:InterPro. DR GO; GO:0048038; F:quinone binding; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 2.120.10.30; -; 1. DR InterPro; IPR011042; 6-blade_b-propeller_TolB-like. DR InterPro; IPR012938; Glc/Sorbosone_DH. DR InterPro; IPR011041; Quinoprot_gluc/sorb_DH. DR Pfam; PF07995; GSDH; 1. DR SUPFAM; SSF50952; SSF50952; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 47 352 GSDH. {ECO:0000259|Pfam:PF07995}. SQ SEQUENCE 410 AA; 45687 MW; D18846CD545E4D9B CRC64; MYDKIDKHSM RNIIFVVSIM ILLGGTSAYA ESFPEIGVKV DVIADNLKIP WGIDFAQDGR IFFTERPGTV NVIEDGQVSQ IMSRGVGGGE GGMLGIALDP EFEKNHYVYV YYTYNELLGI KNRLVQYVES DNKLNHEKIL LEDIPGAPYH DGGRIKFGPD EMLYVTTGDA VEPELSQNLN SVAGKILRIK SDGTIPEDNP FGSAIYSIGH RNPQGIAWDK SGNLIATEHG PSGWRGVAHD EINWIVSGAN YGWPDVIGDE TLEGATNPIL HSGDDTWAPS GSTFYYGDDM PMFDGKYFVA ALKGQHIHVI EFDESYNVLF HGELFSGEFG RIRDVANGPD GLYFMTSNQD GRGNPNLYDD KILRISPLYN YENNSWVQNI SEWYMKGEIS KEESINAHSY LIERGTISQN // ID A9A3Y8_NITMS Unreviewed; 570 AA. AC A9A3Y8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 58. DE SubName: Full=Thermosome {ECO:0000313|EMBL:ABX13688.1}; GN OrderedLocusNames=Nmar_1792 {ECO:0000313|EMBL:ABX13688.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13688.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13688.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13688.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the TCP-1 chaperonin family. CC {ECO:0000256|RuleBase:RU004187}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13688.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3Y8; -. DR SMR; A9A3Y8; 13-528. DR STRING; 436308.Nmar_1792; -. DR EnsemblBacteria; ABX13688; ABX13688; Nmar_1792. DR KEGG; nmr:Nmar_1792; -. DR eggNOG; arCOG01257; Archaea. DR eggNOG; COG0459; LUCA. DR HOGENOM; HOG000226729; -. DR OMA; RESGMII; -. DR BioCyc; NMAR436308:GI3J-1840-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0006457; P:protein folding; IEA:InterPro. DR Gene3D; 1.10.560.10; -; 2. DR Gene3D; 3.30.260.10; -; 2. DR Gene3D; 3.50.7.10; -; 1. DR InterPro; IPR017998; Chaperone_TCP-1. DR InterPro; IPR002194; Chaperonin_TCP-1_CS. DR InterPro; IPR002423; Cpn60/TCP-1. DR InterPro; IPR027409; GroEL-like_apical_dom. DR InterPro; IPR027413; GROEL-like_equatorial. DR InterPro; IPR027410; TCP-1-like_intermed. DR InterPro; IPR012714; Thermosome_arc. DR Pfam; PF00118; Cpn60_TCP1; 1. DR PRINTS; PR00304; TCOMPLEXTCP1. DR SUPFAM; SSF52029; SSF52029; 1. DR TIGRFAMs; TIGR02339; thermosome_arch; 1. DR PROSITE; PS00751; TCP1_2; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU003319}; KW Chaperone {ECO:0000256|RuleBase:RU003319}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU003319}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 570 AA; 60921 MW; 0E7496730E298E69 CRC64; MAMQATSKGN MPVVLLKEGG SETKGRDAQK NNIAASKIVA EIVHTSLGPR GMDKMLVDSL GDVTITNDGA TILKEIDVQH PAAKMLVEIS KTTDNEVGDG TTSAVVLAGA LLENAESLID QDVHPTIIVD GYRKAGRKAK QFLESISDKI SPNDKNILNK IAKTSMQTKL VRKDSDQLAD IIVKSVLAVA EKDSESYDVD IDDIKVEKKA GGSIKDSMIV QGIVLDKEIV HGGMPRKINE AKIALINTAL EISKTETDAK INISNPQQLK SFLDEENRML KTMVDKVIGS GANVVLCQKG IDDMAQHYLA KAGIIAVRRI KESDLTKLAK ATGARIVTNL DDLFEKDLGS ADLVEERKIE EDKWVFVEGC KHPKSVTLLL RGGSQRVVDE VERSVHDALM VVKDVIEKPE IVAGGGAPET YAATKLRNWA KSLEGREQLA AEKFADALEA IPLTLSENAG MDPIDTLTLL RSKQQKGEKW TGIDVMKGKI ANMKSSDIIE PLAVKLQIVS ASAEAACMIL RIDDVIATQK SAGGPPGGGE GGMPPGMGGM PPGMPGMGGM GGMPDMGGMM // ID A9A456_NITMS Unreviewed; 285 AA. AC A9A456; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 32. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12240.1}; GN OrderedLocusNames=Nmar_0344 {ECO:0000313|EMBL:ABX12240.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12240.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12240.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12240.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12240.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0344; -. DR EnsemblBacteria; ABX12240; ABX12240; Nmar_0344. DR KEGG; nmr:Nmar_0344; -. DR eggNOG; arCOG08643; Archaea. DR eggNOG; ENOG4110ZS7; LUCA. DR HOGENOM; HOG000106337; -. DR OMA; DFEATIN; -. DR BioCyc; NMAR436308:GI3J-359-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR027560; PEFG-CTERM. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 255 275 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 285 AA; 29969 MW; 372BAD4D5FF64AE0 CRC64; MNFKRSTTSM AIALLAVSLI SVTSIQQDAF AQTQGMTLTA MADSGSKTIT VTGKTISTFT DVSFTVKSPS GNNVVAIGQT TPDAEGMFGT EFKIGPTWTE DGFYEIKAQQ GSAALYTMEV LVEVNGGMAE KTAVTESSYS SDIFEPIKPV VTIDAGIEIS TAKTEMGSDT IVVTGNTDRV SADITLTVTA PNGNVVSVDQ VSPMLDGKFT ATITTGGPLW TQDGFYTVTA QQFNDPKYTA SAEVDIQDGV VVPEFGTIAA MILAVAIISI IAVSAKSRLS IMPRY // ID A9A1J4_NITMS Unreviewed; 150 AA. AC A9A1J4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13173.1}; GN OrderedLocusNames=Nmar_1277 {ECO:0000313|EMBL:ABX13173.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13173.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13173.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13173.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13173.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1J4; -. DR STRING; 436308.Nmar_1277; -. DR EnsemblBacteria; ABX13173; ABX13173; Nmar_1277. DR KEGG; nmr:Nmar_1277; -. DR BioCyc; NMAR436308:GI3J-1310-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.1260.10; -; 1. DR InterPro; IPR027396; DsrEFH-like. DR InterPro; IPR003787; Sulphur_relay_DrsE/F-like. DR Pfam; PF02635; DrsE; 1. DR SUPFAM; SSF75169; SSF75169; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 47 138 DrsE. {ECO:0000259|Pfam:PF02635}. SQ SEQUENCE 150 AA; 16057 MW; D8001DC2A43B5509 CRC64; MKGYLKYSLS IPVFAAVFLL AVTALPAQEQ PADAYARTVM VHITSDENHR VLMGVQHAKA MLDSGKNVAV LLDVDGVKAG VNQPDSNLSA SNDLLQQFLA DGGRVIACQH CVGMAGFSMS DMLPGVEIDS HPNMPKMQRL IDSGAVILDY // ID A9A234_NITMS Unreviewed; 223 AA. AC A9A234; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE RecName: Full=3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; DE Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; DE EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214}; DE AltName: Full=Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; DE AltName: Full=Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; GN Name=aroD {ECO:0000256|HAMAP-Rule:MF_00214}; GN OrderedLocusNames=Nmar_0551 {ECO:0000313|EMBL:ABX12447.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12447.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12447.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12447.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Involved in the third step of the chorismate pathway, CC which leads to the biosynthesis of aromatic amino acids. Catalyzes CC the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the CC first double bond of the aromatic ring to yield 3- CC dehydroshikimate. {ECO:0000256|HAMAP-Rule:MF_00214}. CC -!- CATALYTIC ACTIVITY: 3-dehydroquinate = 3-dehydroshikimate + H(2)O. CC {ECO:0000256|HAMAP-Rule:MF_00214}. CC -!- PATHWAY: Metabolic intermediate biosynthesis; chorismate CC biosynthesis; chorismate from D-erythrose 4-phosphate and CC phosphoenolpyruvate: step 3/7. {ECO:0000256|HAMAP-Rule:MF_00214}. CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00214}. CC -!- SIMILARITY: Belongs to the type-I 3-dehydroquinase family. CC {ECO:0000256|HAMAP-Rule:MF_00214}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12447.1; -; Genomic_DNA. DR ProteinModelPortal; A9A234; -. DR STRING; 436308.Nmar_0551; -. DR EnsemblBacteria; ABX12447; ABX12447; Nmar_0551. DR KEGG; nmr:Nmar_0551; -. DR eggNOG; arCOG02097; Archaea. DR eggNOG; COG0710; LUCA. DR HOGENOM; HOG000105515; -. DR KO; K03785; -. DR OMA; REEGGHW; -. DR BioCyc; NMAR436308:GI3J-573-MONOMER; -. DR UniPathway; UPA00053; UER00086. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003855; F:3-dehydroquinate dehydratase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009073; P:aromatic amino acid family biosynthetic process; IEA:UniProtKB-HAMAP. DR GO; GO:0009423; P:chorismate biosynthetic process; IEA:UniProtKB-UniPathway. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00214; AroD; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR001381; DHquinase_I. DR Pfam; PF01487; DHquinase_I; 1. DR TIGRFAMs; TIGR01093; aroD; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00214}; KW Aromatic amino acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00214}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000313|EMBL:ABX12447.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Schiff base {ECO:0000256|HAMAP-Rule:MF_00214}. FT REGION 32 34 3-dehydroquinate binding. FT {ECO:0000256|HAMAP-Rule:MF_00214}. FT ACT_SITE 121 121 Proton donor/acceptor. FT {ECO:0000256|HAMAP-Rule:MF_00214}. FT ACT_SITE 147 147 Schiff-base intermediate with substrate. FT {ECO:0000256|HAMAP-Rule:MF_00214}. FT BINDING 8 8 3-dehydroquinate. {ECO:0000256|HAMAP- FT Rule:MF_00214}. FT BINDING 62 62 3-dehydroquinate. {ECO:0000256|HAMAP- FT Rule:MF_00214}. FT BINDING 186 186 3-dehydroquinate. {ECO:0000256|HAMAP- FT Rule:MF_00214}. FT BINDING 209 209 3-dehydroquinate. {ECO:0000256|HAMAP- FT Rule:MF_00214}. SQ SEQUENCE 223 AA; 25464 MW; ECE1D8C63EAAD429 CRC64; MKYKTCVSIA EKTPNKVKQT LKIALKKSDF VEIRFDFLKI EQIPQTLELI KKDLKKSVCT LRPKTEGGQF PGNEKERIAI IKLIAEYNPY LLDVEFNTLK RNSSLVKYLK STKTKLLVSW HDFKKTPSSA ELKKKMNQMS KFSNFVKIVS TAKSTDDSTR MLELYSKKGK NNLISFAMGD FGRISRILCL YLGSPYTYVS LGKPVAPGQF SVDEVNKITN LKK // ID A9A3X3_NITMS Unreviewed; 242 AA. AC A9A3X3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=Silent information regulator protein Sir2 {ECO:0000313|EMBL:ABX13673.1}; GN OrderedLocusNames=Nmar_1777 {ECO:0000313|EMBL:ABX13673.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13673.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13673.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13673.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13673.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3X3; -. DR STRING; 436308.Nmar_1777; -. DR EnsemblBacteria; ABX13673; ABX13673; Nmar_1777. DR KEGG; nmr:Nmar_1777; -. DR eggNOG; arCOG04248; Archaea. DR eggNOG; COG0846; LUCA. DR HOGENOM; HOG000085951; -. DR KO; K12410; -. DR OMA; EPNVIHE; -. DR BioCyc; NMAR436308:GI3J-1824-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0070403; F:NAD+ binding; IEA:InterPro. DR GO; GO:0036054; F:protein-malonyllysine demalonylase activity; IEA:InterPro. DR GO; GO:0036055; F:protein-succinyllysine desuccinylase activity; IEA:InterPro. DR Gene3D; 3.30.1600.10; -; 2. DR Gene3D; 3.40.50.1220; -; 3. DR HAMAP; MF_01121; Sirtuin_ClassIII; 1. DR InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom. DR InterPro; IPR003000; Sirtuin. DR InterPro; IPR026591; Sirtuin_cat_small_dom. DR InterPro; IPR027546; Sirtuin_class_III. DR InterPro; IPR026590; Ssirtuin_cat_dom. DR PANTHER; PTHR11085; PTHR11085; 1. DR Pfam; PF02146; SIR2; 1. DR SUPFAM; SSF52467; SSF52467; 1. DR PROSITE; PS50305; SIRTUIN; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 5 242 Deacetylase sirtuin-type. FT {ECO:0000259|PROSITE:PS50305}. SQ SEQUENCE 242 AA; 27139 MW; 2FF20F1F37B3E898 CRC64; MKMFESIKDQ VKNAKKIVFV TGAGISQESG IPTFRGKDGL WRNYDAMKLA TIDAFYDDPK LVWEWYNERR HNIFSANPNQ GHKAIAELEK FADVVSLTQN IDGLHQKAGS TKVLELHGSI VKIKCTVCDF SDEIMTDFTE NPPLCKCGSI LRPDVVWFGE SLPQDVWQEA IIHANQCDLM IIVGTSLVVS PANTLPIYAK QNNAMLIEIN PENTEMSSEM DLVIRNTSAN ALPEFVSLFK NL // ID A9A2Q4_NITMS Unreviewed; 198 AA. AC A9A2Q4; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13581.1}; GN OrderedLocusNames=Nmar_1685 {ECO:0000313|EMBL:ABX13581.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13581.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13581.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13581.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13581.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1685; -. DR EnsemblBacteria; ABX13581; ABX13581; Nmar_1685. DR KEGG; nmr:Nmar_1685; -. DR eggNOG; arCOG10598; Archaea. DR eggNOG; ENOG4110ZQI; LUCA. DR BioCyc; NMAR436308:GI3J-1730-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004176; F:ATP-dependent peptidase activity; IEA:InterPro. DR InterPro; IPR003111; LON_substr-bd_dom. DR Pfam; PF02190; LON_substr_bdg; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 21 195 LON. {ECO:0000259|Pfam:PF02190}. SQ SEQUENCE 198 AA; 22375 MW; BABEE3290B959464 CRC64; MLGDGQFGVC LIDETNSVSG WNSPKMVGTI AKITKCSDVE MDGLQLHIET LGRNSFRIKK IIPPSIPQPE NYDPLSVEGH QQISEIHEKI GTEAKMYIQA EVEMIPEIDE NISLEQWEEL VAMWKKKIIK QALPQVVDPH SLEHVLEQYY LTTDTPTIDY IYSLSALGAK DPNDLQPILE ATTMDELLQK VEELLTIK // ID A9A4P7_NITMS Unreviewed; 454 AA. AC A9A4P7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13025.1}; GN OrderedLocusNames=Nmar_1129 {ECO:0000313|EMBL:ABX13025.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13025.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13025.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13025.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13025.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4P7; -. DR STRING; 436308.Nmar_1129; -. DR EnsemblBacteria; ABX13025; ABX13025; Nmar_1129. DR KEGG; nmr:Nmar_1129; -. DR eggNOG; arCOG02926; Archaea. DR eggNOG; COG3794; LUCA. DR BioCyc; NMAR436308:GI3J-1161-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR Gene3D; 2.60.40.420; -; 1. DR InterPro; IPR008972; Cupredoxin. DR SUPFAM; SSF49503; SSF49503; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 428 448 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 454 AA; 49630 MW; 51CDDE005C44BD1A CRC64; MSSLFVEEKS SANFTNVKLL EKNLKFLCCN NLQHLVKTLA IFSVLMLFSI ISLSPAFADH SEVTVVPADG SGSPGCEKTA DGCYIPSTAT VDVGGVVIMS NTDTAGHTYT SGNPEDGPDG IFDSSLLMTG NSFEWSPDEV GEYDYYCMVH PWMLGTIIVQ EVSAEEDDVM EQPMKAEMFG WDRFESMQDP GVGHEEHQLA ILLAPSENTY AGTLRYDASE PIQLVSLRGP LGSDETAGKI WTPDGKTKFE LTLVDQESSS GEWDFSGNAL AVHTFNTNQF VVDVQIDYEE IPPQKSMMEE DMMKDDSMME QETMMADDSV METTSDEAES SGGGCLIATA AYGTELAPQV QFLREIRDNT VMSTASGASF MTGFNQLYYS FSPTIADLER ENPMFKESVR AFITPMISTL SIMTLAEDGS EAEVLGLGIS VIALNLAMYI AAPAVVVWQI KKRI // ID A9A564_NITMS Unreviewed; 955 AA. AC A9A564; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 54. DE RecName: Full=Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; DE EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049}; DE AltName: Full=Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; GN Name=leuS {ECO:0000256|HAMAP-Rule:MF_00049}; GN OrderedLocusNames=Nmar_0367 {ECO:0000313|EMBL:ABX12263.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12263.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12263.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12263.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: ATP + L-leucine + tRNA(Leu) = AMP + CC diphosphate + L-leucyl-tRNA(Leu). {ECO:0000256|HAMAP- CC Rule:MF_00049}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00049}. CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase CC family. {ECO:0000256|HAMAP-Rule:MF_00049}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12263.1; -; Genomic_DNA. DR ProteinModelPortal; A9A564; -. DR STRING; 436308.Nmar_0367; -. DR EnsemblBacteria; ABX12263; ABX12263; Nmar_0367. DR KEGG; nmr:Nmar_0367; -. DR eggNOG; arCOG00809; Archaea. DR eggNOG; COG0495; LUCA. DR HOGENOM; HOG000216620; -. DR KO; K01869; -. DR OMA; TADDWKY; -. DR BioCyc; NMAR436308:GI3J-383-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP. DR GO; GO:0004823; F:leucine-tRNA ligase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0006429; P:leucyl-tRNA aminoacylation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.730.10; -; 1. DR Gene3D; 3.40.50.620; -; 2. DR Gene3D; 3.90.740.10; -; 1. DR HAMAP; MF_00049_A; Leu_tRNA_synth_A; 1. DR InterPro; IPR002300; aa-tRNA-synth_Ia. DR InterPro; IPR020791; Leu-tRNA-lgase_arc. DR InterPro; IPR004493; Leu-tRNA-synth_Ia_arc/euk. DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR009080; tRNAsynth_1a_anticodon-bd. DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit. DR Pfam; PF08264; Anticodon_1; 1. DR Pfam; PF00133; tRNA-synt_1; 1. DR SUPFAM; SSF47323; SSF47323; 1. DR SUPFAM; SSF50677; SSF50677; 2. DR TIGRFAMs; TIGR00395; leuS_arch; 1. PE 3: Inferred from homology; KW Aminoacyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049, KW ECO:0000313|EMBL:ABX12263.1}; KW ATP-binding {ECO:0000256|HAMAP-Rule:MF_00049}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00049}; KW Ligase {ECO:0000256|HAMAP-Rule:MF_00049, ECO:0000313|EMBL:ABX12263.1}; KW Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00049}; KW Protein biosynthesis {ECO:0000256|HAMAP-Rule:MF_00049}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 12 659 tRNA-synt_1. {ECO:0000259|Pfam:PF00133}. FT DOMAIN 694 828 Anticodon_1. {ECO:0000259|Pfam:PF08264}. FT MOTIF 39 49 "HIGH" region. {ECO:0000256|HAMAP- FT Rule:MF_00049}. FT MOTIF 621 625 "KMSKS" region. {ECO:0000256|HAMAP- FT Rule:MF_00049}. FT BINDING 624 624 ATP. {ECO:0000256|HAMAP-Rule:MF_00049}. SQ SEQUENCE 955 AA; 108742 MW; C82EF1E3B825C884 CRC64; MTINWTDIET KWRNKWQENK DFETNPNDKP KKFITVAYPY PNSPQHIGHG RTYTLADVHA RFYRMKGYNV LFPMGFHYTG TPVLGMAKRI EAGEKEILDG LRNIYHVPED AIKTFVEPIK IADYFHEEIK SGMIEMGYSI DWRREFTTIV PGYQKFIEWQ ITTLKEKGRI IQGSHPVGWC PVDQNPVSQH DTMGDVEPKI DDKNFLIKFK LGDSIFPITT LRPETIFGIT NLWVNPNTVY KKVSVDGEEW IVSEECAKKI SFFEKKVEIT GEIPGSEIIG KTATNHDGRE IPVLPAEFVE PSMGTGLVMS VPAHAPKDYQ ALMDLKAKNH ELASKLEPIP IIVTEGYGSI PAKEICEKMG VSDQSDDKLE EATKELYLKE FTDGKLNDKC LQFDGEKVQF GRDKIRAWLQ ENNHLEKFPV LENAPVRCRC GAECVVKVLN NQWFLNYGDE EWKELARNCL DEMNILPNNI KTEFVEVIDW LHERACARQQ GLGTKLPWDN DWIVESLSDS VIYMAYYTLS RFVNDGTVQP ENLTKELFDY LLLDKGDVSL ATSTSKLSED IINTMKKEFT YFYPVDSRHS GRDLVQNHLS FFVLNHVAIF EKNLWPQEIV VNGSVMMDGA KMSKSMGNII PLRAAIKDHG ADPIRLAIIS SAELLQDADF NMESVSGIQS KLESLLEACS SLKTSEIGEL QAEDRWILSK TQSKIAEITE AVEKMRLREA LHDILFTFET DLSWYQKRIA AKGRDDVSGI LHQINSSRVA MLSPFAPHVA EEMWKNLGNS ELVSKSQWPE YSADKVDAAS IQAEELLKNT IDDIANIIKV TKITPKKIVI YVNSDETKSK IYRKMLSIMV GGQNNMGVVM KELIADPNTT DAKKMPDFVQ KTIKDLHSES EEIKKMKLEA ESFDEKEFLK SEIASMGQKE FGVDIEVYSE SDSNIYDPKG KARHARPFKP AILIE // ID A9A5N6_NITMS Unreviewed; 100 AA. AC A9A5N6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Glutaredoxin {ECO:0000313|EMBL:ABX13041.1}; GN OrderedLocusNames=Nmar_1145 {ECO:0000313|EMBL:ABX13041.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13041.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13041.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13041.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13041.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5N6; -. DR STRING; 436308.Nmar_1145; -. DR EnsemblBacteria; ABX13041; ABX13041; Nmar_1145. DR KEGG; nmr:Nmar_1145; -. DR eggNOG; arCOG01218; Archaea. DR eggNOG; COG0526; LUCA. DR BioCyc; NMAR436308:GI3J-1177-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005623; C:cell; IEA:GOC. DR GO; GO:0009055; F:electron carrier activity; IEA:InterPro. DR GO; GO:0015035; F:protein disulfide oxidoreductase activity; IEA:InterPro. DR GO; GO:0045454; P:cell redox homeostasis; IEA:InterPro. DR Gene3D; 3.40.30.10; -; 1. DR InterPro; IPR002109; Glutaredoxin. DR InterPro; IPR012336; Thioredoxin-like_fold. DR Pfam; PF13192; Thioredoxin_3; 1. DR SUPFAM; SSF52833; SSF52833; 1. DR PROSITE; PS51354; GLUTAREDOXIN_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 17 100 Glutaredoxin. FT {ECO:0000259|PROSITE:PS51354}. SQ SEQUENCE 100 AA; 11267 MW; 0716F6AE2E4A23BD CRC64; MEKIIVFVVP AVNGHLKIIQ SNLKMNHKIE ILTTPSCGNC KVVEAMLDEM NIKYTVIDVT EKPEYLEKYP IFTAPGVVID DKLVFTGIPK KHELLEKLSA // ID A9A1C3_NITMS Unreviewed; 115 AA. AC A9A1C3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 31. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12758.1}; GN OrderedLocusNames=Nmar_0862 {ECO:0000313|EMBL:ABX12758.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12758.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12758.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12758.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12758.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0862; -. DR EnsemblBacteria; ABX12758; ABX12758; Nmar_0862. DR KEGG; nmr:Nmar_0862; -. DR eggNOG; arCOG08655; Archaea. DR eggNOG; ENOG4110ZWN; LUCA. DR HOGENOM; HOG000105616; -. DR OMA; LYAFVDE; -. DR BioCyc; NMAR436308:GI3J-890-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 115 AA; 12684 MW; 1502CE2DC3149374 CRC64; MQYFQALKLG QKRVADAREY LNKLTDGKAM PALALTDTKS NVWKPVGEEN LYAFVDESAG FVLTDNSGYI LALVDNSGAS KTIVQGVTQE QKEKLEKAFE SDNIPKFEGK VILPV // ID A9A3B6_NITMS Unreviewed; 364 AA. AC A9A3B6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Myo-inositol-1-phosphate synthase {ECO:0000313|EMBL:ABX12545.1}; GN OrderedLocusNames=Nmar_0649 {ECO:0000313|EMBL:ABX12545.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12545.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12545.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12545.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12545.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3B6; -. DR STRING; 436308.Nmar_0649; -. DR EnsemblBacteria; ABX12545; ABX12545; Nmar_0649. DR KEGG; nmr:Nmar_0649; -. DR eggNOG; arCOG04213; Archaea. DR eggNOG; COG1260; LUCA. DR HOGENOM; HOG000224236; -. DR KO; K01858; -. DR OMA; LVCYLPV; -. DR BioCyc; NMAR436308:GI3J-674-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004512; F:inositol-3-phosphate synthase activity; IEA:InterPro. DR GO; GO:0006021; P:inositol biosynthetic process; IEA:InterPro. DR GO; GO:0008654; P:phospholipid biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 2. DR InterPro; IPR002587; Myo-inos-1-P_Synthase. DR InterPro; IPR013021; Myo-inos-1-P_Synthase_GAPDH. DR InterPro; IPR016040; NAD(P)-bd_dom. DR PANTHER; PTHR11510; PTHR11510; 1. DR Pfam; PF01658; Inos-1-P_synth; 1. DR PIRSF; PIRSF015578; Myoinos-ppht_syn; 1. DR SUPFAM; SSF51735; SSF51735; 2. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 199 306 Inos-1-P_synth. FT {ECO:0000259|Pfam:PF01658}. SQ SEQUENCE 364 AA; 40339 MW; C1242E727BAB471C CRC64; MTGRIKVGLV GIGNCFSGLI QGIEYYRKNP SQEVIGIIHD KLAGYGIHDI DFVCGFDVGE NKVGKLINEA IYEYPNMVDW IPKDEMPKTD GKVFESPVLD GVGLWVENRV KPIKSAKTDD EIAEEAKKII KETGAEIIVS YLPVGSDKVT QFWAQVCLDT NTAFVNCIPS FIASDPEWAK KFEEKNIPCI GDDIKGQVGA TIVHRTLAKL CNDRGTKIEK TYQINVGGNT DFLNMKEQER LVSKKISKTE SVQSQLDERL DDDQIYVGPS DFIPFLGNTK LMFMRIEGRQ WANIPYNMEV RLDVDDKANS AGIVIDAIRL AKIALDRGVG GPIKPASAYL MKHPIEQTSD VAAKTACEKF VAGE // ID A9A1K2_NITMS Unreviewed; 341 AA. AC A9A1K2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 45. DE SubName: Full=Aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein {ECO:0000313|EMBL:ABX13181.1}; GN OrderedLocusNames=Nmar_1285 {ECO:0000313|EMBL:ABX13181.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13181.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13181.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13181.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13181.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1K2; -. DR STRING; 436308.Nmar_1285; -. DR EnsemblBacteria; ABX13181; ABX13181; Nmar_1285. DR KEGG; nmr:Nmar_1285; -. DR eggNOG; arCOG01803; Archaea. DR eggNOG; COG0715; LUCA. DR HOGENOM; HOG000249384; -. DR KO; K02051; -. DR OMA; AWVPEPT; -. DR BioCyc; NMAR436308:GI3J-1318-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016020; C:membrane; IEA:InterPro. DR GO; GO:0006790; P:sulfur compound metabolic process; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR InterPro; IPR010067; ABC_SsuA_sub-bd. DR TIGRFAMs; TIGR01728; SsuA_fam; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 341 AA; 37081 MW; 786346AC5B81B40E CRC64; MKIRSVIAAG IGAIIVFSAL GIALSSSDTT YENKIRIAYF PNIGHAIPIV GMEKGFFAEH LGDDVKIETK VFDSGPQAIE SLFANSIDIA YVGPGPAING FLNSNNQNVK ILAGAASGGA SFIVHPDSEI NTADDFAGKK IAAPQIGNTQ DVSLRHFLAE NQLKPAEKGG NVVVYNIPNP DIYTLFVKGD IDGAWVAEPW ATILETELDG KRLFHEEELW PDKEFASVLL IGNVDYIDKN SVVWADYIRA HHETQIWIES NPIETRNVFN DFLDSYLGQS LSDDVVDVAL SNIMITADPK PNSVVSFAEK ADTLGYLGRN GYDLSGIFYS FDTNSLEEAS T // ID A9A2I1_NITMS Unreviewed; 423 AA. AC A9A2I1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Integrase family protein {ECO:0000313|EMBL:ABX13220.1}; GN OrderedLocusNames=Nmar_1324 {ECO:0000313|EMBL:ABX13220.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13220.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13220.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13220.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13220.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2I1; -. DR STRING; 436308.Nmar_1324; -. DR EnsemblBacteria; ABX13220; ABX13220; Nmar_1324. DR KEGG; nmr:Nmar_1324; -. DR eggNOG; arCOG01242; Archaea. DR eggNOG; ENOG4111SUM; LUCA. DR OMA; GKTGMRR; -. DR BioCyc; NMAR436308:GI3J-1358-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 139 298 Phage_integrase. FT {ECO:0000259|Pfam:PF00589}. FT COILED 350 384 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 423 AA; 49510 MW; 4FFCFFE3378F1508 CRC64; MKQVNNQIEQ ELSFENISLI KKYDREMVSQ SIAIATRQKH LRTLLTLSKL LKKNWKDVTR DDIDDLVFLI MDQFADESGQ ETHYSYDHKK ILKIFFRWYK LGSREFVQVG DPPETKNVKM KKVKDKIARE DLLNEEDRIK ILYACGENAR DRALIDCHME AGTRPGEILN LKLKHVKFDK HGCVLQVDGK TGARTIRIVR ATPNLAAWIA VHPYKDEPEM PLWPNISHHK KGSPITYAAA RQILHRRCKI ANISKRVYLN LFRHSEATTT ANFMTEAQMR KRHGWSSDSK MPARYVHLVN SDVEDAIFKH YGIKKEDEKM PEMPVKCHFC EMYNPSDSVT CTKCGKPLNL ESAIKREEQE NAEKKKLEEK IKMLEQRQIE SEKNQKGYSD LKSIVDEYLK EYFEDVFDKI EFVKNQKQNS ITN // ID A9A1A9_NITMS Unreviewed; 114 AA. AC A9A1A9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12395.1}; GN OrderedLocusNames=Nmar_0499 {ECO:0000313|EMBL:ABX12395.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12395.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12395.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12395.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12395.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0499; -. DR EnsemblBacteria; ABX12395; ABX12395; Nmar_0499. DR KEGG; nmr:Nmar_0499; -. DR eggNOG; arCOG08758; Archaea. DR eggNOG; ENOG4111078; LUCA. DR HOGENOM; HOG000108679; -. DR OMA; WIIDDIE; -. DR BioCyc; NMAR436308:GI3J-519-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 114 AA; 13030 MW; 3D5175D48C1DA881 CRC64; MSFTPKIPVE LQIRKIIFEK FNEVDTIFTN DSIFEILKEN GDIDPSWIID DIESFVNNLC DSGLARNVAQ NFTTIHLKLF DEVEKLHCNA CNQDVFLAKS EDRVCPNSSC KSTI // ID A9A1V5_NITMS Unreviewed; 223 AA. AC A9A1V5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:ABX12076.1}; GN OrderedLocusNames=Nmar_0180 {ECO:0000313|EMBL:ABX12076.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12076.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12076.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12076.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12076.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0180; -. DR EnsemblBacteria; ABX12076; ABX12076; Nmar_0180. DR KEGG; nmr:Nmar_0180; -. DR eggNOG; arCOG00457; Archaea. DR eggNOG; COG2085; LUCA. DR HOGENOM; HOG000229953; -. DR KO; K06988; -. DR OMA; RRYKAHA; -. DR BioCyc; NMAR436308:GI3J-182-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0070967; F:coenzyme F420 binding; IEA:InterPro. DR GO; GO:0050661; F:NADP binding; IEA:InterPro. DR GO; GO:0016651; F:oxidoreductase activity, acting on NAD(P)H; IEA:InterPro. DR GO; GO:0006740; P:NADPH regeneration; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR010185; NpdG. DR InterPro; IPR028939; ProC_N. DR Pfam; PF03807; F420_oxidored; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR TIGRFAMs; TIGR01915; npdG; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 104 F420_oxidored. FT {ECO:0000259|Pfam:PF03807}. SQ SEQUENCE 223 AA; 24164 MW; 48FE71C585C34E24 CRC64; MKVGIIGGTG GMGKGFALRW SQNHDVIVGS RDATRASESA VEYTNLAKEA FGEIKGSISG NDNVSVAKES DVLILSIPYE NIDSVCSGIL PEVNDNCVVV SPIVPMTKTD VGFECVSIKD NKPFSYKLVS NHMKNKSKLV SAFHVISEKK LVNPTLELDY DIFVCGDDKE AVGVVNTLID EIRGLRSIYL GPIELSYLAE MSTPLLLNAM IQNKIKNPGI KII // ID A9A4W2_NITMS Unreviewed; 77 AA. AC A9A4W2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13416.1}; GN OrderedLocusNames=Nmar_1520 {ECO:0000313|EMBL:ABX13416.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13416.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13416.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13416.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13416.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1520; -. DR EnsemblBacteria; ABX13416; ABX13416; Nmar_1520. DR KEGG; nmr:Nmar_1520; -. DR eggNOG; arCOG10588; Archaea. DR eggNOG; ENOG41110EB; LUCA. DR BioCyc; NMAR436308:GI3J-1562-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 77 AA; 9178 MW; 7198A432C6A364A6 CRC64; MTNRLTENNF EEEKKKLTPD KGFDLIGIDY FSEPGNQLYL VEHFEMYQDV LNAKKERKNP EEYFILYKGA GGEFFCR // ID A9A207_NITMS Unreviewed; 253 AA. AC A9A207; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 40. DE RecName: Full=Chorismate dehydratase {ECO:0000256|HAMAP-Rule:MF_00995}; DE EC=4.2.1.151 {ECO:0000256|HAMAP-Rule:MF_00995}; DE AltName: Full=Menaquinone biosynthetic enzyme MqnA {ECO:0000256|HAMAP-Rule:MF_00995}; GN Name=mqnA {ECO:0000256|HAMAP-Rule:MF_00995}; GN OrderedLocusNames=Nmar_0524 {ECO:0000313|EMBL:ABX12420.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12420.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12420.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12420.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the dehydration of chorismate into 3-[(1- CC carboxyvinyl)oxy]benzoate, a step in the biosynthesis of CC menaquinone (MK, vitamin K2). {ECO:0000256|HAMAP-Rule:MF_00995}. CC -!- CATALYTIC ACTIVITY: Chorismate = 3-((1-carboxyvinyl)oxy)benzoate + CC H(2)O. {ECO:0000256|HAMAP-Rule:MF_00995}. CC -!- PATHWAY: Quinol/quinone metabolism; menaquinone biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00995}. CC -!- SIMILARITY: Belongs to the MqnA/MqnD family. MqnA subfamily. CC {ECO:0000256|HAMAP-Rule:MF_00995}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12420.1; -; Genomic_DNA. DR ProteinModelPortal; A9A207; -. DR STRING; 436308.Nmar_0524; -. DR EnsemblBacteria; ABX12420; ABX12420; Nmar_0524. DR KEGG; nmr:Nmar_0524; -. DR eggNOG; arCOG00655; Archaea. DR eggNOG; COG1427; LUCA. DR HOGENOM; HOG000016345; -. DR KO; K11782; -. DR OMA; WGLARTG; -. DR BioCyc; NMAR436308:GI3J-545-MONOMER; -. DR UniPathway; UPA00079; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016836; F:hydro-lyase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0009234; P:menaquinone biosynthetic process; IEA:UniProtKB-HAMAP. DR HAMAP; MF_00995; MqnA; 1. DR InterPro; IPR003773; Menaquinone_biosynth. DR InterPro; IPR030868; MqnA. DR Pfam; PF02621; VitK2_biosynth; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00995}; KW Menaquinone biosynthesis {ECO:0000256|HAMAP-Rule:MF_00995}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 253 AA; 28598 MW; 21CFC0E268A6786B CRC64; MMRLGIVDYI NMLPVVYGLE KNKVKFDGKI IRDVPTNLNS SLSQGIIDVG FISSIEYARG DYNLLPYCIS SKKTVMSVVL VSKVPFEEIK SIQLSTEAAT SVILLKILMR YAYKQKVSYG KNGDAELLIG DQALKKLIKK PKHVLDLGKA WNTFSNKNMV FGVLASRKNL PQKKIETLLD SIHLSYQWGQ DNLNEIIDYA AEKTNLDKKI ISQYFAGLSY SIGIKEISSL KEFYTYSKKI NAITEIPCLD IYK // ID A9A398_NITMS Unreviewed; 402 AA. AC A9A398; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 13-APR-2016, entry version 52. DE SubName: Full=Geranylgeranyl reductase {ECO:0000313|EMBL:ABX12527.1}; GN OrderedLocusNames=Nmar_0631 {ECO:0000313|EMBL:ABX12527.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12527.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12527.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12527.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12527.1; -; Genomic_DNA. DR ProteinModelPortal; A9A398; -. DR STRING; 436308.Nmar_0631; -. DR EnsemblBacteria; ABX12527; ABX12527; Nmar_0631. DR KEGG; nmr:Nmar_0631; -. DR eggNOG; arCOG00570; Archaea. DR eggNOG; COG0644; LUCA. DR KO; K17830; -. DR OMA; LMTDESN; -. DR BioCyc; NMAR436308:GI3J-656-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016628; F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; IEA:InterPro. DR Gene3D; 3.50.50.60; -; 1. DR InterPro; IPR023753; FAD/NAD-binding_dom. DR InterPro; IPR011777; Geranylgeranyl_Rdtase_fam. DR Pfam; PF12831; FAD_oxidored; 1. DR SUPFAM; SSF51905; SSF51905; 2. DR TIGRFAMs; TIGR02032; GG-red-SF; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 6 152 FAD/NAD-binding_dom. FT {ECO:0000259|Pfam:PF12831}. SQ SEQUENCE 402 AA; 44285 MW; D3940A4E4338B78D CRC64; MSDIYDLVVV GGGPAGSSAA YTASKNGLKV ILIEKEESIA ESVRTSGVTW IQNIEEFGIP EDCYNPVKNF EFYSPNNKVS IGDTVARSAV LDVRKTYRWL ASQAEAQGTE IVVNTTVKDV IKDESGKIIG VKAIQNEKEI EFFGKVVIDA SGFQSTVAKS MGFVKQWERF GAGAEYEAKV EHVKADTWWL MVGEKYSPAG YAWIFPLGDN IARIGVGIGK PDSPVDPTAR LKELIENKEG PIANLGKIEP IEFHYGLIPN DGLSRKTVYD NLILVGDSAG QANPLVLEGI RYAIKFGRIA GDVASKAIKA NDTSEKKLSE YEDNWKKAIE SKIKSAGKVQ DRWIGLTDKD WDKELDIISE LKPEEFLDFI KADFGLSNML KLATNHPKLA VRQLFNLVKG KS // ID A9A4F6_NITMS Unreviewed; 192 AA. AC A9A4F6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 25. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12645.1}; GN OrderedLocusNames=Nmar_0749 {ECO:0000313|EMBL:ABX12645.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12645.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12645.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12645.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12645.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0749; -. DR EnsemblBacteria; ABX12645; ABX12645; Nmar_0749. DR KEGG; nmr:Nmar_0749; -. DR eggNOG; arCOG10540; Archaea. DR eggNOG; ENOG41110V9; LUCA. DR BioCyc; NMAR436308:GI3J-775-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 192 AA; 22536 MW; C133EC3D9220D89A CRC64; MSQSEPTLMM YERERIILEH IKENPDLHHN ALLKLIVPKF MAKTTFEKTR DSLIEKEIIL VNSKSNMKFY HLTENYTHKA AQHIEQTTNN SFHDLKIQIK RLETDFPHKD IDEKINISNS ILRRLLQTDN GFTILDAIKN PKKTLYRDEH LTIQQLIYQV YAIIQNDKDS ELLVPTIISF LGVIVPKNPS DK // ID A9A4X0_NITMS Unreviewed; 792 AA. AC A9A4X0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 47. DE SubName: Full=AAA ATPase containing von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:ABX13424.1}; GN OrderedLocusNames=Nmar_1528 {ECO:0000313|EMBL:ABX13424.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13424.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13424.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13424.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13424.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4X0; -. DR STRING; 436308.Nmar_1528; -. DR EnsemblBacteria; ABX13424; ABX13424; Nmar_1528. DR KEGG; nmr:Nmar_1528; -. DR eggNOG; arCOG07561; Archaea. DR eggNOG; ENOG4111Z4M; LUCA. DR HOGENOM; HOG000109536; -. DR OMA; PETYNRF; -. DR BioCyc; NMAR436308:GI3J-1570-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR GO; GO:0007155; P:cell adhesion; IEA:InterPro. DR Gene3D; 4.10.1080.10; -; 6. DR InterPro; IPR003367; Thrombospondin_3-like_rpt. DR InterPro; IPR028974; TSP_type-3_rpt. DR Pfam; PF02412; TSP_3; 6. DR SUPFAM; SSF103647; SSF103647; 5. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 792 AA; 86670 MW; 513EF89DCD95A881 CRC64; MPMNPAFAAT DLDNDGVDDT VDACPNLRED NEGAIDGCPS NFVPWYDEDY DGIEDHIDQC PNLREKYNKF QDEDGCPDIS PQGGPGGLPD SDGDGFVDTV DKCPNQPETF NGILDRDGCP DDFGSGDRDR DGVPDAIDAC PLSPETYNRF QDADGCPDAQ NDLAFIDTDN DGIKDSLDLC PTEPEVYNDY LDTDGCPDVT LDSDFIDTDG DGIANQFDIC PTDPETFNRF ADYDGCPDSI PSFIGSLNDA DGDRIMDTDD ACPLEPERYN GFQDDDGCPD IPPYTSDSDS DMDGIPNSID QCPTVKETYN KFQDLDGCPD FVADNRGAID SDGDGIIDNR DLCPNQPEIH NGFQDRDGCP DSYGTGDRDR DGIIDGLDQC PTAKETYNKF QDSDGCPDSV SGLSALDFDG DGISDLNDQC PLRPETFNGY QDKDGCPDES VMDSDGDGIR DSLDQCPSEP ETWNRYNDDD GCPDTPGEGD SDFDGILDSV DECPLDRERY NGFQDEDGCP DYPDFLTSMD SDFDGIVDLE DQCPLVPETY NRFQDLDGCP DSVADNKGSP DSDNDGINDY NDHCPNQPET YNGILDLDGC PDDYILGYDR DQDGIPDAID ACPTAKETWN KFQDDDGCPD TISESFVVDS DNDGILDVDD DCPLVAENYN GFQDEDGCPD VDNVQPDTDG DGVPDVMDMC PTQNETWNNY VDYDGCPDTL PIGNVVIDSD GDGINDNVDL CPNLKESWNK YNDADGCPDI APEQSRYKHD ADLDDIINEH DLCPLEPEDY DGDNDTDGCP DS // ID A9A629_NITMS Unreviewed; 84 AA. AC A9A629; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 27. DE SubName: Full=DNA topoisomerase I-fused to SWI domain {ECO:0000313|EMBL:ABX13507.1}; GN OrderedLocusNames=Nmar_1611 {ECO:0000313|EMBL:ABX13507.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13507.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13507.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13507.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13507.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1611; -. DR EnsemblBacteria; ABX13507; ABX13507; Nmar_1611. DR KEGG; nmr:Nmar_1611; -. DR eggNOG; arCOG10596; Archaea. DR eggNOG; ENOG4111035; LUCA. DR BioCyc; NMAR436308:GI3J-1655-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Isomerase {ECO:0000313|EMBL:ABX13507.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 84 AA; 9295 MW; 0269A3CA3BFF3F54 CRC64; MAVKKKTTKR KTTTKKKAAP KKKAAPKKKA TKSKAKKPAF GGYAISFAGR KETAEQIFGK KPIAPSEMTK KIWAFVKSKK LSNR // ID A9A1R6_NITMS Unreviewed; 412 AA. AC A9A1R6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 43. DE SubName: Full=Protein containing aminopeptidase domain {ECO:0000313|EMBL:ABX12037.1}; GN OrderedLocusNames=Nmar_0137 {ECO:0000313|EMBL:ABX12037.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12037.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12037.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12037.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12037.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R6; -. DR STRING; 436308.Nmar_0137; -. DR EnsemblBacteria; ABX12037; ABX12037; Nmar_0137. DR KEGG; nmr:Nmar_0137; -. DR eggNOG; ENOG4102U0B; Archaea. DR eggNOG; COG4310; LUCA. DR HOGENOM; HOG000284806; -. DR OMA; ERQYCSP; -. DR BioCyc; NMAR436308:GI3J-140-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-KW. DR InterPro; IPR032610; DUF2172. DR InterPro; IPR032589; DUF4910. DR InterPro; IPR012353; UCP015244. DR Pfam; PF09940; DUF2172; 1. DR Pfam; PF16254; DUF4910; 1. DR PIRSF; PIRSF015244; UCP015244; 1. PE 4: Predicted; KW Aminopeptidase {ECO:0000313|EMBL:ABX12037.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Hydrolase {ECO:0000313|EMBL:ABX12037.1}; KW Protease {ECO:0000313|EMBL:ABX12037.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 2 337 DUF4910. {ECO:0000259|Pfam:PF16254}. FT DOMAIN 53 142 DUF2172. {ECO:0000259|Pfam:PF09940}. SQ SEQUENCE 412 AA; 48055 MW; 86A901EE4656BBB6 CRC64; MYNLINDLYQ KQRNLVSIDY DESLEYISKI LPLKIHKIPS GTKCWTWEVP LAWEVKEAFI ENNGGKIIDV KDHPLHLASY STPIDKIISK EELMKHLSSN KERPNAIPFD YKYYQNDWGF CVQFNKLKDF TEKNYHVVIN SEFKEGELKI GELFVKGELK ETIVLVAHLC HPAMANDDLS GVSVLVDIGK NLLEKNNLKY SYRILFLPET IGSIAYLSQN EELISDMKFG LFLEMLGNDN FHSLQFSRQK NTEIDKIAEN VIKHNQKEFK TGDFREIISN DEMVFNGPGV NIPMISISRW PYPEYHTSDD NISIIKKENL EESKKLVLKI LEALENNYTP IRKFKGPPHL SKYGLWVDWR DDLELNKMLE KIFLEFEGDN SIVEIAEKLN LDFFVLLDYV NKFLQAKLVE KK // ID A9A3F1_NITMS Unreviewed; 315 AA. AC A9A3F1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; DE Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383}; GN Name=tfb {ECO:0000256|HAMAP-Rule:MF_00383}; GN OrderedLocusNames=Nmar_0987 {ECO:0000313|EMBL:ABX12883.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12883.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12883.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12883.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Stabilizes TBP binding to an archaeal box-A promoter. CC Also responsible for recruiting RNA polymerase II to the pre- CC initiation complex (DNA-TBP-TFIIB). {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00383}; CC Note=Binds 1 zinc ion per subunit. {ECO:0000256|HAMAP- CC Rule:MF_00383}; CC -!- SIMILARITY: Belongs to the TFIIB family. {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC -!- SIMILARITY: Contains 1 TFIIB-type zinc finger. {ECO:0000256|HAMAP- CC Rule:MF_00383}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12883.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3F1; -. DR STRING; 436308.Nmar_0987; -. DR EnsemblBacteria; ABX12883; ABX12883; Nmar_0987. DR KEGG; nmr:Nmar_0987; -. DR eggNOG; arCOG01981; Archaea. DR eggNOG; COG1405; LUCA. DR HOGENOM; HOG000108633; -. DR KO; K03124; -. DR OMA; DINRTHR; -. DR BioCyc; NMAR436308:GI3J-1015-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:UniProtKB-HAMAP. DR Gene3D; 1.10.472.10; -; 2. DR HAMAP; MF_00383; TF2B_arch; 1. DR InterPro; IPR013763; Cyclin-like. DR InterPro; IPR000812; TFIIB. DR InterPro; IPR023484; TFIIB_arc. DR InterPro; IPR023486; TFIIB_CS. DR InterPro; IPR013150; TFIIB_cyclin. DR InterPro; IPR013137; Znf_TFIIB. DR PANTHER; PTHR11618; PTHR11618; 1. DR Pfam; PF08271; TF_Zn_Ribbon; 1. DR Pfam; PF00382; TFIIB; 2. DR PRINTS; PR00685; TIFACTORIIB. DR SMART; SM00385; CYCLIN; 2. DR SUPFAM; SSF47954; SSF47954; 2. DR PROSITE; PS00782; TFIIB; 2. DR PROSITE; PS51134; ZF_TFIIB; 1. PE 3: Inferred from homology; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00383}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repeat {ECO:0000256|HAMAP-Rule:MF_00383}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00383}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00383}; KW Zinc {ECO:0000256|HAMAP-Rule:MF_00383}; KW Zinc-finger {ECO:0000256|HAMAP-Rule:MF_00383}. FT DOMAIN 20 51 TFIIB-type. FT {ECO:0000259|PROSITE:PS51134}. FT REPEAT 136 219 1. {ECO:0000256|HAMAP-Rule:MF_00383}. FT REPEAT 230 311 2. {ECO:0000256|HAMAP-Rule:MF_00383}. FT ZN_FING 20 51 TFIIB-type. {ECO:0000256|HAMAP- FT Rule:MF_00383}. FT COILED 124 151 {ECO:0000256|SAM:Coils}. FT METAL 24 24 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 27 27 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 43 43 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. FT METAL 46 46 Zinc. {ECO:0000256|HAMAP-Rule:MF_00383}. SQ SEQUENCE 315 AA; 34239 MW; B6A5030B2E9CF7E1 CRC64; MDNKAIAEIQ VIMLRNQMVT GSKCPACGDK KMITDENTGE LFCGKCGFVV SDKIADTGAE WRSFSNDEGN KARTGAGTSL TMHDMGLSTV IGAANKDSTG KPLSASVKSS IERLRTWDSR SQAHSSADRN LRQALNEMDK LKDKLALTDA VIEKAAYIYR KAMEKKLVRG RSIQGLVAAC LYASCRNTET PRTLDDVAKG INIRRKDVAR CYRLIFRELE LKMPVVDPVK GVSRIASIAE LSEKSKRKAI AILNEAKKMG VVAGKDPMGI AAAALYLACI STGEVKSQKD ISIASGVTEV TIRNRCAGLR KMIND // ID A9A3S9_NITMS Unreviewed; 192 AA. AC A9A3S9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 29. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13341.1}; GN OrderedLocusNames=Nmar_1445 {ECO:0000313|EMBL:ABX13341.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13341.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13341.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13341.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13341.1; -; Genomic_DNA. DR EnsemblBacteria; ABX13341; ABX13341; Nmar_1445. DR KEGG; nmr:Nmar_1445; -. DR eggNOG; arCOG08730; Archaea. DR eggNOG; ENOG41110J6; LUCA. DR HOGENOM; HOG000107958; -. DR OMA; ENDNDEC; -. DR BioCyc; NMAR436308:GI3J-1481-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 192 AA; 22606 MW; F817C0658A3B1E2C CRC64; MSAIPWFDDF EGVAYRYYDL RMNVVPLVSD RKKSASLWHD TIHFWVDPSI KIRFVEIGDK YWFIMGADSQ KPDTNLSFYK VLQKSEHYER FKKGHGGEAY LRLGTYAHKS LDDVKKDALC NCGHEARDHD ENDNDECLYN DCDCKEFSTF QVNLLKRKKT ITDIQFLKEE DVKDDPLVWN CFNANDFSES ET // ID A9A5E5_NITMS Unreviewed; 87 AA. AC A9A5E5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12344.1}; GN OrderedLocusNames=Nmar_0448 {ECO:0000313|EMBL:ABX12344.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12344.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12344.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12344.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12344.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0448; -. DR EnsemblBacteria; ABX12344; ABX12344; Nmar_0448. DR KEGG; nmr:Nmar_0448; -. DR eggNOG; arCOG10525; Archaea. DR eggNOG; ENOG4110ZQK; LUCA. DR OMA; GRIYNSF; -. DR BioCyc; NMAR436308:GI3J-467-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 87 AA; 10320 MW; 53E9EC132B6394FA CRC64; MDKTLLKKID EKIQETISNK DDIKQLISLL STIDNSKSFA LGIVVGRIYN AFYYQSKRIL NREPTKDEFE EFLEYIQNKK SDLENLW // ID A9A5R1_NITMS Unreviewed; 181 AA. AC A9A5R1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 20-JAN-2016, entry version 40. DE SubName: Full=NAD(P)H dehydrogenase (Quinone) {ECO:0000313|EMBL:ABX13066.1}; GN OrderedLocusNames=Nmar_1170 {ECO:0000313|EMBL:ABX13066.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13066.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13066.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13066.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13066.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5R1; -. DR STRING; 436308.Nmar_1170; -. DR EnsemblBacteria; ABX13066; ABX13066; Nmar_1170. DR KEGG; nmr:Nmar_1170; -. DR eggNOG; arCOG02577; Archaea. DR eggNOG; COG2249; LUCA. DR HOGENOM; HOG000063966; -. DR KO; K03923; -. DR OMA; VHDIFKG; -. DR BioCyc; NMAR436308:GI3J-1202-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.40.50.360; -; 1. DR InterPro; IPR003680; Flavodoxin_fold. DR InterPro; IPR029039; Flavoprotein-like_dom. DR Pfam; PF02525; Flavodoxin_2; 1. DR SUPFAM; SSF52218; SSF52218; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 174 Flavodoxin_2. {ECO:0000259|Pfam:PF02525}. SQ SEQUENCE 181 AA; 20721 MW; D581EBA0C9E3DD6D CRC64; MPTILLILGS QTGAFAAGNY NKGLFEAAKE LLSKKYDVIE TKIEEGYEIA DEIEKWKKSD FIIYQYPIYW FMMPPILKKY LDDVYAYGEF FAFNDGPYGS GGLMKGKKVM LSTTWNSPAD ALGGEFFDGA SRDDVLLPMR LSQTYCGMEE LSHFSCHDVI KNPHFDDDKQ RFIKHLEQVF S // ID A9A601_NITMS Unreviewed; 323 AA. AC A9A601; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 52. DE RecName: Full=Probable cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; GN Name=cobD {ECO:0000256|HAMAP-Rule:MF_00024}; GN OrderedLocusNames=Nmar_1583 {ECO:0000313|EMBL:ABX13479.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13479.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13479.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13479.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Converts cobyric acid to cobinamide by the addition of CC aminopropanol on the F carboxylic group. {ECO:0000256|HAMAP- CC Rule:MF_00024}. CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis. CC {ECO:0000256|HAMAP-Rule:MF_00024}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|HAMAP- CC Rule:MF_00024}; Multi-pass membrane protein {ECO:0000256|HAMAP- CC Rule:MF_00024}. CC -!- SIMILARITY: Belongs to the CobD/CbiB family. {ECO:0000256|HAMAP- CC Rule:MF_00024}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13479.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1583; -. DR EnsemblBacteria; ABX13479; ABX13479; Nmar_1583. DR KEGG; nmr:Nmar_1583; -. DR eggNOG; arCOG04274; Archaea. DR eggNOG; COG1270; LUCA. DR HOGENOM; HOG000290070; -. DR KO; K02227; -. DR OMA; IYFCISA; -. DR BioCyc; NMAR436308:GI3J-1627-MONOMER; -. DR UniPathway; UPA00148; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0015420; F:cobalamin-transporting ATPase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0048472; F:threonine-phosphate decarboxylase activity; IEA:InterPro. DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway. DR HAMAP; MF_00024; CobD_CbiB; 1. DR InterPro; IPR004485; Cobalamin_biosynth_CobD/CbiB. DR Pfam; PF03186; CobD_Cbib; 1. DR TIGRFAMs; TIGR00380; cobD; 1. PE 3: Inferred from homology; KW Cell membrane {ECO:0000256|HAMAP-Rule:MF_00024}; KW Cobalamin biosynthesis {ECO:0000256|HAMAP-Rule:MF_00024}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_00024}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_00024}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_00024}. FT TRANSMEM 1 21 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00024}. FT TRANSMEM 53 73 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00024}. FT TRANSMEM 84 104 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00024}. FT TRANSMEM 159 179 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00024}. FT TRANSMEM 300 320 Helical. {ECO:0000256|HAMAP- FT Rule:MF_00024}. SQ SEQUENCE 323 AA; 35347 MW; A43D5E151735E91B CRC64; MILESLIIVG FALVIDLVFG DPKNRYHPTA WIGGLIAKLT PLGQNQNQKL ERFGGIFVVT IPAGIVVTLL LTLDFGISLL STDWITLIVS VVIGALLLKT TIAIKGLERY AMAVVESLEM NNLDSARENL SMIVKRNTSN LDKNHVISGV LESVSENTVD GITGPLFYYA IFGLPGAFVY RIINTADSMI GYKTDIFKNL GWFAATCDTV LNYIPSRLTG LVMIISAAIL QNNWKESYKI MIRDGKKTES PNAGYPMAAL AGALGTKFEK VNHYELGSGE LTLTKEHVHS AISIMKLTSI LFFGLVIVPI VTVLTLIGWW IHA // ID A9A5U7_NITMS Unreviewed; 145 AA. AC A9A5U7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 50. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX13102.1}; GN OrderedLocusNames=Nmar_1206 {ECO:0000313|EMBL:ABX13102.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13102.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13102.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13102.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13102.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5U7; -. DR STRING; 436308.Nmar_1206; -. DR EnsemblBacteria; ABX13102; ABX13102; Nmar_1206. DR KEGG; nmr:Nmar_1206; -. DR eggNOG; arCOG02391; Archaea. DR eggNOG; COG0784; LUCA. DR HOGENOM; HOG000034820; -. DR OMA; HEVCYCA; -. DR BioCyc; NMAR436308:GI3J-1239-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 28 143 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 145 AA; 16311 MW; 33A02898371839B5 CRC64; MSQNTFKIHS GYICPCHNLL VLEGEDKTVL LVDDDIDLLE LNKFSISNMG YNVITATNGE EAVAAYKTAR PDIVIMDIKM PKMDGFDAFA RMKKFDSDCK VTLITAYAID EKKLLNAQSM GLLNVINKPY EFDDIEKLIK EHVGD // ID A9A1F9_NITMS Unreviewed; 278 AA. AC A9A1F9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13138.1}; GN OrderedLocusNames=Nmar_1242 {ECO:0000313|EMBL:ABX13138.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13138.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13138.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13138.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13138.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1242; -. DR EnsemblBacteria; ABX13138; ABX13138; Nmar_1242. DR KEGG; nmr:Nmar_1242; -. DR eggNOG; arCOG00367; Archaea. DR eggNOG; COG1630; LUCA. DR OMA; MAMEINT; -. DR BioCyc; NMAR436308:GI3J-1275-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR018977; NurA_domain. DR Pfam; PF09376; NurA; 1. DR SMART; SM00933; NurA; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 46 253 NurA. {ECO:0000259|SMART:SM00933}. SQ SEQUENCE 278 AA; 30943 MW; 868857C85666B5C6 CRC64; MLNTVYKDAI INRDKMLSIL KGPKFEQIIQ KARENWVEFT PVKEEVVTAG IDSSFNNTKF QGIELWATTA VSIKADGEVL VDLHESGLGS DTDLSRIASK MEIDACEKTV DQVDLVLMDG SLHSQFMTRQ SALDAQVVRT MKKRDNVIFI AKTSNTKKQF EKLGSLAGDI FYYNHVTNNP GFSKLFVEKK YGSDKVISST FVRLSDSTPI IKLEFLGEQH GEGDIKSVMN KLYKTSIGGY PYALKLAHNN CKISDKELAK MVSLLGLSNE IGSREVLG // ID A9A2L5_NITMS Unreviewed; 479 AA. AC A9A2L5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 40. DE SubName: Full=Beta-lactamase domain protein {ECO:0000313|EMBL:ABX13254.1}; GN OrderedLocusNames=Nmar_1358 {ECO:0000313|EMBL:ABX13254.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13254.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13254.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13254.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13254.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2L5; -. DR STRING; 436308.Nmar_1358; -. DR EnsemblBacteria; ABX13254; ABX13254; Nmar_1358. DR KEGG; nmr:Nmar_1358; -. DR eggNOG; arCOG00507; Archaea. DR eggNOG; ENOG410XQNN; LUCA. DR BioCyc; NMAR436308:GI3J-1392-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR Gene3D; 3.60.15.10; -; 1. DR InterPro; IPR002350; Kazal_dom. DR InterPro; IPR001279; Metallo-B-lactamas. DR Pfam; PF00050; Kazal_1; 1. DR SMART; SM00280; KAZAL; 1. DR SMART; SM00849; Lactamase_B; 1. DR SUPFAM; SSF56281; SSF56281; 1. DR PROSITE; PS51465; KAZAL_2; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 153 194 Kazal-like. FT {ECO:0000259|PROSITE:PS51465}. SQ SEQUENCE 479 AA; 52876 MW; 3CA067C2CB3FE50B CRC64; MQDTAVAKNN KRYDKFQKYM KNNFLVFSFS LFSLVAVLAV SLVSYSYADD VRIHEKHIPY NNVCAPGFAS LGDLCVLNDR CGPSVYAGKV CVMDGVKQPY LRPTQQGNAG IAASDVICAE GLNLIFKSRD ASPACVTPDS ADKLEQRGWQ TQYPVIACTL EYAPVCGIDG KTYGNKCAID SSHVAVKHAG ECSDVIPTEF ELDETVLQHT LVPIQTDPDK GYAVLEIADG VYWLVGSGYQ TMFLTTGQGV VAVDAPQPIG EKYLSAIDEV TDEPITHMIY SHHHQDHTGA AGEIFSQDIT YISHKDAADE LKSENNPDRP IPTQILEGDF NTLEIGNKTI EFYNLGDFHS KGNLLILLPN YKVAMLVDLL RPAESPYRAF GVTPDIDLYL DTHDTLQNYD FEVLISGHTN LLATKDHIKT NKQFTQSVMD NAQLGLDSVD SEALDVCTTL TIEQWEGKLG NLDAFMDDHC NAMIEYLTQ // ID A9A455_NITMS Unreviewed; 294 AA. AC A9A455; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 38. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12239.1}; GN OrderedLocusNames=Nmar_0343 {ECO:0000313|EMBL:ABX12239.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12239.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12239.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12239.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12239.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0343; -. DR EnsemblBacteria; ABX12239; ABX12239; Nmar_0343. DR KEGG; nmr:Nmar_0343; -. DR eggNOG; arCOG08643; Archaea. DR eggNOG; arCOG08716; Archaea. DR eggNOG; ENOG4110ZJK; LUCA. DR HOGENOM; HOG000106337; -. DR OMA; CGANEIT; -. DR BioCyc; NMAR436308:GI3J-358-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR027560; PEFG-CTERM. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 264 284 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 294 AA; 30895 MW; 8F8421FE5CD93821 CRC64; MNSRTSFALL AVLTAVGTLT MSAAYADEIP QACVGCTMAD ARATANEMLR ADIPVSVWTD KTGYDQGDMI SVQGQVANVA SGFPVTITVV SPLNSIITVD QIAVTDEGSF ETTLNTAGAM WKYSGTYTIK ANYGSAEKSN SVKVQLMGGV AYTPTYETPQ KSKQCGANEI TANGYCVPFS ISGGAVTSAT LNTNDNSIVV NISSTDDGTL TVTPSKTVQD GIFMVLVDGE EWDDVEIVAN KVTVMFPAGT EQIEIIGTFV VPEFGTIAAM ILAVAIISII AVSAKSRLSI MPRY // ID A9A1T5_NITMS Unreviewed; 299 AA. AC A9A1T5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 48. DE SubName: Full=Putative phosphoenolpyruvate phosphomutase {ECO:0000313|EMBL:ABX12056.1}; GN OrderedLocusNames=Nmar_0160 {ECO:0000313|EMBL:ABX12056.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12056.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12056.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12056.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12056.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1T5; -. DR STRING; 436308.Nmar_0160; -. DR EnsemblBacteria; ABX12056; ABX12056; Nmar_0160. DR KEGG; nmr:Nmar_0160; -. DR eggNOG; arCOG00581; Archaea. DR eggNOG; COG2513; LUCA. DR HOGENOM; HOG000220040; -. DR KO; K01841; -. DR OMA; VRDSNEA; -. DR BioCyc; NMAR436308:GI3J-161-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR Gene3D; 3.20.20.60; -; 1. DR InterPro; IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. DR SUPFAM; SSF51621; SSF51621; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Pyruvate {ECO:0000313|EMBL:ABX12056.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 299 AA; 32711 MW; E13DEC3CAF77C4EF CRC64; MNDGANILNS QLNQKSILKV AGAFDAMSAK LVELSGFDAI WAGSFAISAT HALPDASILT MTEFLSVASN MTDACSIPVI ADCDTGFGGP SNVSHMVKKY ESAGVAAVSI EDKIFPKQNS LLENGNQQLL SEKDFVAKLI AAKNAKVNEN FMIIARVEAL IAGLGVDEAL KRANAYKKAG ADAILIHSKS KTPDEIFEFC DLWDGDIPII AIPTSYPNVT IDELEKHKIR IAIYANQSLR VAHLAMKEHL EQLSKAKSLS QIKSNMTTME EIFKLQEMYE IKKQETDIEK NLKKLGYIN // ID A9A454_NITMS Unreviewed; 263 AA. AC A9A454; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12238.1}; GN OrderedLocusNames=Nmar_0342 {ECO:0000313|EMBL:ABX12238.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12238.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12238.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12238.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12238.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0342; -. DR EnsemblBacteria; ABX12238; ABX12238; Nmar_0342. DR KEGG; nmr:Nmar_0342; -. DR eggNOG; arCOG08643; Archaea. DR eggNOG; arCOG08716; Archaea. DR eggNOG; ENOG4110ZJQ; LUCA. DR OMA; DHRTITI; -. DR BioCyc; NMAR436308:GI3J-357-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR InterPro; IPR027560; PEFG-CTERM. DR InterPro; IPR010916; TonB_box_CS. DR TIGRFAMs; TIGR04296; PEFG-CTERM; 1. DR PROSITE; PS00430; TONB_DEPENDENT_REC_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 236 255 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 263 AA; 28639 MW; 1E119CADD3629308 CRC64; MIISTSFVYA QESPITVQTD DNNYDEGDTI VVSGKVNTKI AGVDVVLQLF REGNMLEIAQ IKVAQDGTFS HTILAEGPLW TNSGTILVRA SYEVAGGTIA ETEFSYTPKS EVVTTTTNFE VDAGSHGTFD VEYSIKGGEV EDMVVESENF ALAISINSTD EGSITLELPR EFIGAEKQDG KDEKFIILIS SPDNPNGIEA DYEEAPVHSD HRTITINFEQ GDTDILIIGT YVVPEFGTIA MIVLLVGIMT AIILTRNKFQ IKI // ID A9A2T1_NITMS Unreviewed; 430 AA. AC A9A2T1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 34. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13608.1}; GN OrderedLocusNames=Nmar_1712 {ECO:0000313|EMBL:ABX13608.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13608.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13608.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13608.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13608.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1712; -. DR EnsemblBacteria; ABX13608; ABX13608; Nmar_1712. DR KEGG; nmr:Nmar_1712; -. DR eggNOG; arCOG02080; Archaea. DR eggNOG; COG1361; LUCA. DR HOGENOM; HOG000109291; -. DR OMA; ANVGTQD; -. DR BioCyc; NMAR436308:GI3J-1757-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 405 423 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 430 AA; 47314 MW; E75EA5B800A995C7 CRC64; MNQKLFFLLL SFLLIPLFLG NSYAQITSGG FGDSPFERDF GDVKFLDAYF GTIDEKIEVE AGDSNVPFTV VFANVGTQDI TGIKGQLSLP FGFSAADGPG SIIKADSDAN SLAGENFHLT FFVNVDQNVT IQQYPGTVKV DYSRLRESGV RTAFEDFQFK VTGDSLINVR ALDPFLTSLR TNNVVIEIAN DGTAPISSVD IVATNTQTEL ASTTSSTTNV ENIVLLESNW DVGNIEPRSS RHLTATVYVP EGLKDDTLRI PLSISYYNAH GDQQIISKIV DFYIKGLIEL TIFNIDVIEL SGTQMVIGEI INEGNEDGLF GFVSIEPRGD SNIKSNTQFI DEIEVDAPVP FNVPIEFDGE PEYGEHEITI TVRYKDSVRD ELFVIEDTTI FVNEPTTDNE SGPDSSMIII PIVIAIAAGM YIMRRRKKTA // ID A9A3Y5_NITMS Unreviewed; 185 AA. AC A9A3Y5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13685.1}; GN OrderedLocusNames=Nmar_1789 {ECO:0000313|EMBL:ABX13685.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13685.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13685.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13685.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13685.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1789; -. DR EnsemblBacteria; ABX13685; ABX13685; Nmar_1789. DR KEGG; nmr:Nmar_1789; -. DR eggNOG; arCOG00551; Archaea. DR eggNOG; COG1711; LUCA. DR HOGENOM; HOG000110329; -. DR KO; K09723; -. DR OMA; PYENAQA; -. DR BioCyc; NMAR436308:GI3J-1837-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 185 AA; 21270 MW; 4ED15E0365019D38 CRC64; MSETNQIDIN YLHHTVLRET EDESLLEIDP NFYRNLSDFI GNLKKQEFDG VESKIKDTMI EMATELTSLL INVRLEKISK SKDLEIGFLL DEEKFILDSQ EEENDRKEMI LSATINGKSK FLESLSQNHK TKKIAVRFLQ EVDEIVGADL EKYGPFKIED IATIPYENAQ ALIAKNAATK VRLED // ID A9A503_NITMS Unreviewed; 147 AA. AC A9A503; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 26. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX11912.1}; GN OrderedLocusNames=Nmar_0012 {ECO:0000313|EMBL:ABX11912.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11912.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11912.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11912.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11912.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0012; -. DR EnsemblBacteria; ABX11912; ABX11912; Nmar_0012. DR KEGG; nmr:Nmar_0012; -. DR BioCyc; NMAR436308:GI3J-12-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 62 117 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 147 AA; 16884 MW; 78B662246C88A9E1 CRC64; MDKMKISFLF SLTVIAILIS LTPSFAQETE QEPEPPGLPE PSPEPEPIPL PEPEPVPEPF PEETESEKIQ RLTEENEQLK QQNKNLQGQI STLKNEKSGL QSQISQLNER IKDLEEITIE QLRVIMELVN RLKDVFYEKI ISPTFTM // ID A9A5W0_NITMS Unreviewed; 351 AA. AC A9A5W0; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Integrase family protein {ECO:0000313|EMBL:ABX13115.1}; GN OrderedLocusNames=Nmar_1219 {ECO:0000313|EMBL:ABX13115.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13115.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13115.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13115.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13115.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5W0; -. DR STRING; 436308.Nmar_1219; -. DR EnsemblBacteria; ABX13115; ABX13115; Nmar_1219. DR KEGG; nmr:Nmar_1219; -. DR eggNOG; arCOG01241; Archaea. DR eggNOG; COG0582; LUCA. DR KO; K04763; -. DR OMA; YHEERRQ; -. DR BioCyc; NMAR436308:GI3J-1252-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0015074; P:DNA integration; IEA:InterPro. DR GO; GO:0006310; P:DNA recombination; IEA:InterPro. DR Gene3D; 1.10.443.10; -; 1. DR InterPro; IPR011010; DNA_brk_join_enz. DR InterPro; IPR013762; Integrase-like_cat. DR InterPro; IPR002104; Integrase_catalytic. DR Pfam; PF00589; Phage_integrase; 1. DR SUPFAM; SSF56349; SSF56349; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 111 279 Phage_integrase. FT {ECO:0000259|Pfam:PF00589}. FT COILED 302 336 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 351 AA; 41490 MW; 37F05BAA8E6ADF34 CRC64; MKERSILRFE QGIKSRQTLN NYRDHLKNFR NFAEFDSFDG LIAKPVEEIQ TLVEDYLIHL KENRHPNSIP ILFLGVRHFF VMNRIPLYWD IIRKMYPPKI KSAGFKPWTT EKIQKMLAAT TSKRNRAIIH FLASTGARIG VIDGNFTLKY IHDMPEGCKA VLLYPNDNEE YWAFLTPEAT QALDEYHEER RQKGEELTDN SPVFRRDYSR GKKVLPMQRS GVISVMYRVI NNAGLERTKV NHHFDTQMDH GFRKRFNTIL KLKNSVNSNV AEKLLGHKNG LDGVYLKPTR EQCFAEFRKA IVELMIDDSE RQRLKIKQLE REKSELEHYR TKVDELWQDK LRMEHVQLNH A // ID A9A1H5_NITMS Unreviewed; 310 AA. AC A9A1H5; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 55. DE SubName: Full=D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ABX13154.1}; GN OrderedLocusNames=Nmar_1258 {ECO:0000313|EMBL:ABX13154.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13154.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13154.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13154.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the D-isomer specific 2-hydroxyacid CC dehydrogenase family. {ECO:0000256|RuleBase:RU003719}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13154.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1H5; -. DR STRING; 436308.Nmar_1258; -. DR EnsemblBacteria; ABX13154; ABX13154; Nmar_1258. DR KEGG; nmr:Nmar_1258; -. DR eggNOG; arCOG01754; Archaea. DR eggNOG; COG0111; LUCA. DR HOGENOM; HOG000136700; -. DR KO; K00058; -. DR OMA; AKCKQGV; -. DR BioCyc; NMAR436308:GI3J-1291-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051287; F:NAD binding; IEA:InterPro. DR GO; GO:0016616; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 2. DR InterPro; IPR006139; D-isomer_2_OHA_DH_cat_dom. DR InterPro; IPR029752; D-isomer_DH_CS1. DR InterPro; IPR006140; D-isomer_DH_NAD-bd. DR InterPro; IPR016040; NAD(P)-bd_dom. DR Pfam; PF00389; 2-Hacid_dh; 1. DR Pfam; PF02826; 2-Hacid_dh_C; 1. DR SUPFAM; SSF51735; SSF51735; 1. DR PROSITE; PS00065; D_2_HYDROXYACID_DH_1; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 7 308 2-Hacid_dh. {ECO:0000259|Pfam:PF00389}. FT DOMAIN 109 284 2-Hacid_dh_C. {ECO:0000259|Pfam:PF02826}. SQ SEQUENCE 310 AA; 33730 MW; 7788115D8D7B6BEE CRC64; MGFDESVLIC DEVDPILNKI LQDNGLKISY EPEITPEQIL EKISDYNIVI VRSRTTITKE MIDKADNCKI IARVGVGLDN VDQEAAKAKN IRVINAVEGA MNAVAELVLG LMLSLARQTA RGDRGIRNEQ WLKKELKGTE LAGKYLGIVG LGNIGKRLGR LARALNMNII GYDVVPIDEE FSKEVGLMKA DLNTLLQSAD YVSIHVPLLD STYHLLDAQK MSTMKKTAKI INTSRGGVVD EDALYDALKN GTLGGAALDV FEKEPAIGTK LAELDNVILT PHIGAQTKEA QSLAANVIAE KIVQILRGVI // ID A9A359_NITMS Unreviewed; 419 AA. AC A9A359; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 52. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX12488.1}; GN OrderedLocusNames=Nmar_0592 {ECO:0000313|EMBL:ABX12488.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12488.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12488.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12488.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|PIRSR:PIRSR004762-1}; CC Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000256|PIRSR:PIRSR004762-1}; CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12488.1; -; Genomic_DNA. DR ProteinModelPortal; A9A359; -. DR STRING; 436308.Nmar_0592; -. DR EnsemblBacteria; ABX12488; ABX12488; Nmar_0592. DR KEGG; nmr:Nmar_0592; -. DR eggNOG; arCOG00656; Archaea. DR eggNOG; COG1060; LUCA. DR HOGENOM; HOG000224281; -. DR KO; K11781; -. DR OMA; YGHVENE; -. DR BioCyc; NMAR436308:GI3J-615-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW. DR GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IEA:InterPro. DR GO; GO:0051188; P:cofactor biosynthetic process; IEA:InterPro. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_01612; FO_synth_sub2; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR019940; CofH_family. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR020050; FO_synthase_su2. DR InterPro; IPR005244; FO_synthase_su2-like. DR InterPro; IPR007197; rSAM. DR Pfam; PF04055; Radical_SAM; 1. DR PIRSF; PIRSF004762; CHP00423; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR03551; F420_cofH; 1. DR TIGRFAMs; TIGR00423; TIGR00423; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|PIRSR:PIRSR004762-1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Iron {ECO:0000256|PIRSR:PIRSR004762-1}; KW Iron-sulfur {ECO:0000256|PIRSR:PIRSR004762-1}; KW Metal-binding {ECO:0000256|PIRSR:PIRSR004762-1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW S-adenosyl-L-methionine {ECO:0000256|PIRSR:PIRSR004762-1}. FT DOMAIN 68 301 Elp3. {ECO:0000259|SMART:SM00729}. FT METAL 78 78 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 82 82 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004762-1}. FT METAL 85 85 Iron-sulfur (4Fe-4S-S-AdoMet). FT {ECO:0000256|PIRSR:PIRSR004762-1}. SQ SEQUENCE 419 AA; 47880 MW; 23EAB67EA801757D CRC64; MTLNIDSLFK NADPVVSEIL NRALSEKEIT SKEGLELYDT SGIDFHLVGL VADELRKRRV GDVVSYVVNR NINFTNVCIK QCGFCAFSRD FREEEGYFLP TEEIVRRAKE AHQLGATEVC VQAGLPPDME GDVYENICRE IKKEVPDIHI HGFSPEEILY GATRSGVEIE EFLKRMKEAG VDTLPGTSAE ILDQELRDKI SPGRISVKDW ERVIKNAHKM GINTTSTMMF GHLESQEDRV KHIEKLRDIQ KETGGFTEFV PLNFIHTEAP MYKHQLHEGI KQGGSGNDVL LTHAIARIML NNHINNIQMS WVKEGQKMSQ LLLMWGANDF GGTLINESIS TSAGSEHGQL LKPKEIRRMI REIKRIPAER NTKYEILRKF EDDTEHEDEL DKISNTSQFG SYTELIKINK FNYENPRRK // ID A9A556_NITMS Unreviewed; 341 AA. AC A9A556; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 43. DE RecName: Full=DNA primase large subunit PriL {ECO:0000256|HAMAP-Rule:MF_00701}; GN Name=priL {ECO:0000256|HAMAP-Rule:MF_00701}; GN OrderedLocusNames=Nmar_0065 {ECO:0000313|EMBL:ABX11965.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX11965.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX11965.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX11965.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Regulatory subunit of DNA primase, an RNA polymerase CC that catalyzes the synthesis of short RNA molecules used as CC primers for DNA polymerase during DNA replication. Stabilizes and CC modulates the activity of the small subunit, increasing the rate CC of DNA synthesis, and conferring RNA synthesis capability. The DNA CC polymerase activity may enable DNA primase to also catalyze primer CC extension after primer synthesis. May also play a role in DNA CC repair. {ECO:0000256|HAMAP-Rule:MF_00701}. CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000256|HAMAP-Rule:MF_00701}; CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000256|HAMAP-Rule:MF_00701}; CC -!- SUBUNIT: Heterodimer of a small subunit (PriS) and a large subunit CC (PriL). {ECO:0000256|HAMAP-Rule:MF_00701}. CC -!- SIMILARITY: Belongs to the eukaryotic-type primase large subunit CC family. {ECO:0000256|HAMAP-Rule:MF_00701}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX11965.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0065; -. DR EnsemblBacteria; ABX11965; ABX11965; Nmar_0065. DR KEGG; nmr:Nmar_0065; -. DR eggNOG; arCOG03013; Archaea. DR eggNOG; COG2219; LUCA. DR HOGENOM; HOG000110654; -. DR KO; K18882; -. DR OMA; FHEREWK; -. DR BioCyc; NMAR436308:GI3J-65-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:1990077; C:primosome complex; IEA:UniProtKB-KW. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003896; F:DNA primase activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR HAMAP; MF_00701; DNA_primase_lrg_arc; 1. DR InterPro; IPR007238; DNA_primase_lsu_euk/arc. DR InterPro; IPR023642; DNA_primase_lsu_PriL. DR Pfam; PF04104; DNA_primase_lrg; 1. PE 3: Inferred from homology; KW 4Fe-4S {ECO:0000256|HAMAP-Rule:MF_00701}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA replication {ECO:0000256|HAMAP-Rule:MF_00701}; KW DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00701}; KW Iron {ECO:0000256|HAMAP-Rule:MF_00701}; KW Iron-sulfur {ECO:0000256|HAMAP-Rule:MF_00701}; KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00701}; KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00701}; KW Primosome {ECO:0000256|HAMAP-Rule:MF_00701}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00701}; KW Transferase {ECO:0000256|HAMAP-Rule:MF_00701}. FT METAL 239 239 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00701}. FT METAL 312 312 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00701}. FT METAL 321 321 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00701}. FT METAL 327 327 Iron-sulfur (4Fe-4S). {ECO:0000256|HAMAP- FT Rule:MF_00701}. SQ SEQUENCE 341 AA; 38490 MW; DA5CE177E458A2E9 CRC64; MLALGQDEIA KYPFLADAGQ YLKDKGFTLE QFGTDPDLKE LITKAYERIQ VAADGKIYKS DLIGDQVSKE AALPREVFSF LLAIVLLKLS GMHTLIKRFA LAEARRAEKY LEKDLADISD ESKKQLAIRV IDDLFSVQIE KLDDYFVIPV SDYLKHSINF HEREWKLINR HVENGQVFLT PHETVRLIRK ELGTYINSKI VNAKTPTMIP GFEDSVNKLV MLSKKFSTFT VTTGEYPPCI KHAIDILEKG ENLPHSGRFM LATFLLSKGQ SVQQIAPLFK NAPDYNERVT LYQLNHLAGT SGSGTQYSCP SCEKLKTQSL CFATSECDGI ITPLQFGKKR K // ID A9A1R3_NITMS Unreviewed; 197 AA. AC A9A1R3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 37. DE SubName: Full=Methionyl-tRNA formyltransferase-like protein {ECO:0000313|EMBL:ABX12034.1}; GN OrderedLocusNames=Nmar_0134 {ECO:0000313|EMBL:ABX12034.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12034.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12034.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12034.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12034.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1R3; -. DR STRING; 436308.Nmar_0134; -. DR EnsemblBacteria; ABX12034; ABX12034; Nmar_0134. DR KEGG; nmr:Nmar_0134; -. DR eggNOG; arCOG02826; Archaea. DR eggNOG; COG0788; LUCA. DR KO; K00604; -. DR BioCyc; NMAR436308:GI3J-137-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016742; F:hydroxymethyl-, formyl- and related transferase activity; IEA:InterPro. DR GO; GO:0009058; P:biosynthetic process; IEA:InterPro. DR Gene3D; 3.40.50.170; -; 1. DR InterPro; IPR002376; Formyl_transf_N. DR Pfam; PF00551; Formyl_trans_N; 1. DR SUPFAM; SSF53328; SSF53328; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12034.1}. FT DOMAIN 55 174 Formyl_trans_N. FT {ECO:0000259|Pfam:PF00551}. SQ SEQUENCE 197 AA; 22711 MW; 72E245668FF64467 CRC64; MIDIVCFLSR PHGFAVLEKL IKIKKFNILK LYTHSLNPKS QDPNRSIRTD FKLFQQICEQ NNIDLESIDS KESEITSFPN CDYIIEVSWR YLIPTKILSL ARKDAFGIHR GKLPDYAGAE PIKQALLKND NKIILSAHYL ANKIDMGNVI DTVEHDVNYD KSKSFEENIQ RLRDEITPFF PQLAISAINV LEEKNSD // ID A9A2A1_NITMS Unreviewed; 268 AA. AC A9A2A1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 17-FEB-2016, entry version 54. DE RecName: Full=Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131}; DE EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131}; GN Name=trpA {ECO:0000256|HAMAP-Rule:MF_00131}; GN OrderedLocusNames=Nmar_0916 {ECO:0000313|EMBL:ABX12812.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12812.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12812.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12812.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: The alpha subunit is responsible for the aldol cleavage CC of indoleglycerol phosphate to indole and glyceraldehyde 3- CC phosphate. {ECO:0000256|HAMAP-Rule:MF_00131}. CC -!- CATALYTIC ACTIVITY: L-serine + 1-C-(indol-3-yl)glycerol 3- CC phosphate = L-tryptophan + D-glyceraldehyde 3-phosphate + H(2)O. CC {ECO:0000256|HAMAP-Rule:MF_00131}. CC -!- PATHWAY: Amino-acid biosynthesis; L-tryptophan biosynthesis; L- CC tryptophan from chorismate: step 5/5. {ECO:0000256|HAMAP- CC Rule:MF_00131}. CC -!- SUBUNIT: Tetramer of two alpha and two beta chains. CC {ECO:0000256|HAMAP-Rule:MF_00131}. CC -!- SIMILARITY: Belongs to the TrpA family. {ECO:0000256|HAMAP- CC Rule:MF_00131, ECO:0000256|RuleBase:RU003662}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12812.1; -; Genomic_DNA. DR ProteinModelPortal; A9A2A1; -. DR STRING; 436308.Nmar_0916; -. DR EnsemblBacteria; ABX12812; ABX12812; Nmar_0916. DR KEGG; nmr:Nmar_0916; -. DR eggNOG; arCOG01086; Archaea. DR eggNOG; COG0159; LUCA. DR HOGENOM; HOG000223816; -. DR KO; K01695; -. DR OMA; PVFICPP; -. DR BioCyc; NMAR436308:GI3J-944-MONOMER; -. DR UniPathway; UPA00035; UER00044. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0004834; F:tryptophan synthase activity; IEA:UniProtKB-HAMAP. DR Gene3D; 3.20.20.70; -; 1. DR HAMAP; MF_00131; Trp_synth_alpha; 1. DR InterPro; IPR013785; Aldolase_TIM. DR InterPro; IPR011060; RibuloseP-bd_barrel. DR InterPro; IPR018204; Trp_synthase_alpha_AS. DR InterPro; IPR002028; Trp_synthase_suA. DR Pfam; PF00290; Trp_syntA; 1. DR SUPFAM; SSF51366; SSF51366; 1. DR TIGRFAMs; TIGR00262; trpA; 1. DR PROSITE; PS00167; TRP_SYNTHASE_ALPHA; 1. PE 3: Inferred from homology; KW Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00131}; KW Aromatic amino acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_00131}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Lyase {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000313|EMBL:ABX12812.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Tryptophan biosynthesis {ECO:0000256|HAMAP-Rule:MF_00131}. FT ACT_SITE 49 49 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00131}. FT ACT_SITE 60 60 Proton acceptor. {ECO:0000256|HAMAP- FT Rule:MF_00131}. SQ SEQUENCE 268 AA; 29426 MW; F53CE5C00675076D CRC64; MSKIKEKFAE LQTRKEKALI SYIMAGFPNE KSTMSVVRGL VKGGVDIIEL GFPFSDPLAD GPVIQNASTI SLEKGTKIDK FFALVKKIRK ETDIPLVLMT YTNILYHKGY SKFIAEAKKS GIDGFILPDM SIEESKDYLK AARKNADTIF LISPNTNKTR IQKIAKASSG FLYLVAVYGT TGVKTGIKNY TIDAIKNVKK QTKGKIPVGV GFGVSTPDDV KKYIKAGADG VIVGSAFLKL IEKTPQNKLE SKIASFTKSL KKQTLQKK // ID A9A393_NITMS Unreviewed; 319 AA. AC A9A393; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 43. DE SubName: Full=LPPG domain containing protein {ECO:0000313|EMBL:ABX12522.1}; GN OrderedLocusNames=Nmar_0626 {ECO:0000313|EMBL:ABX12522.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12522.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12522.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12522.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12522.1; -; Genomic_DNA. DR ProteinModelPortal; A9A393; -. DR STRING; 436308.Nmar_0626; -. DR EnsemblBacteria; ABX12522; ABX12522; Nmar_0626. DR KEGG; nmr:Nmar_0626; -. DR eggNOG; arCOG04395; Archaea. DR eggNOG; COG0391; LUCA. DR HOGENOM; HOG000230060; -. DR KO; K11212; -. DR OMA; HFQEYWV; -. DR BioCyc; NMAR436308:GI3J-650-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro. DR GO; GO:0016780; F:phosphotransferase activity, for other substituted phosphate groups; IEA:InterPro. DR GO; GO:0051188; P:cofactor biosynthetic process; IEA:InterPro. DR HAMAP; MF_01257; CofD; 1. DR InterPro; IPR002882; CofD/UPF0052. DR InterPro; IPR010115; P-lactate_Trfase. DR Pfam; PF01933; UPF0052; 1. DR TIGRFAMs; TIGR01819; F420_cofD; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 319 AA; 35320 MW; 1F62C774E2B2CE14 CRC64; MNTADFAVLG ENDMITVLAG GTGSVKLVRG LVSQESKVNV VSNVGDNYWL YGLYVCPDID TIVYGLADLL DPEKGWGIKK DTFNFLRQME VFGEETWFRV GDRDAATHLI RTNMLKNGKN LSDITKWMCE KFAVSANIIP VTDNSIETRI ITDKGELHLQ EYWVKHRGRD PVEGIQYIGA DKARPNPEAV NAIHDADMVI LAPGNPLTSI GPMLQIKGIR KELSKIKKKV VAISPLIGDN AISGPAAKYM QAAGIESNAY GLAKMYSDVC SNIIIDTKDR MLSKKIQSLD MKVFETKITM KNKQAEDALA NFILKQVHV // ID A9A242_NITMS Unreviewed; 331 AA. AC A9A242; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 11-NOV-2015, entry version 35. DE SubName: Full=Trans-sialidase {ECO:0000313|EMBL:ABX12455.1}; GN OrderedLocusNames=Nmar_0559 {ECO:0000313|EMBL:ABX12455.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12455.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12455.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12455.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12455.1; -; Genomic_DNA. DR STRING; 436308.Nmar_0559; -. DR EnsemblBacteria; ABX12455; ABX12455; Nmar_0559. DR KEGG; nmr:Nmar_0559; -. DR eggNOG; arCOG08027; Archaea. DR eggNOG; ENOG410Y08E; LUCA. DR HOGENOM; HOG000105482; -. DR BioCyc; NMAR436308:GI3J-581-MONOMER; -. DR Proteomes; UP000000792; Chromosome. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT COILED 3 30 {ECO:0000256|SAM:Coils}. FT COILED 262 296 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 331 AA; 36010 MW; E2FD67F8CA6C7BB2 CRC64; MAAKRKASTK KDLEAKIAEL EAKLSKLSSE IDAKPAETKP AEVKPAETKP AEVKPAETKP AEVKPAETKP AETKPAETKP AETAKPKPTL PKGMGEKPAE APKPEESPKP AETTAQPPAT PNEALESAYY DAPMTDFHQY RAKVTGYSPA PNRYFVRMTA PVGKVPTSDW NQQKASVTGY TACSNQYYAT RARLAYHPAD KRFGTFSGVN MSFDGVQIKE QTQQAPPPPP EPAKPKGTLP KGMGDAPQPQ TTASSGDGKS RQEQLEEYEK DYLQRIEQEK AEREQAYQEA LEAEVEARAK QTRGSLPKGF EPAPEPEPEP AKPKGTLPKG F // ID A9A365_NITMS Unreviewed; 186 AA. AC A9A365; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 56. DE RecName: Full=TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; DE AltName: Full=Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; DE AltName: Full=TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; DE AltName: Full=TATA-box factor {ECO:0000256|HAMAP-Rule:MF_00408}; GN Name=tbp {ECO:0000256|HAMAP-Rule:MF_00408}; GN OrderedLocusNames=Nmar_0598 {ECO:0000313|EMBL:ABX12494.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12494.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12494.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12494.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: General factor that plays a role in the activation of CC archaeal genes transcribed by RNA polymerase. Binds specifically CC to the TATA box promoter element which lies close to the position CC of transcription initiation. {ECO:0000256|HAMAP-Rule:MF_00408, CC ECO:0000256|RuleBase:RU000523}. CC -!- SIMILARITY: Belongs to the TBP family. {ECO:0000256|HAMAP- CC Rule:MF_00408, ECO:0000256|RuleBase:RU000523}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12494.1; -; Genomic_DNA. DR ProteinModelPortal; A9A365; -. DR SMR; A9A365; 4-182. DR STRING; 436308.Nmar_0598; -. DR EnsemblBacteria; ABX12494; ABX12494; Nmar_0598. DR KEGG; nmr:Nmar_0598; -. DR eggNOG; arCOG01764; Archaea. DR eggNOG; COG2101; LUCA. DR HOGENOM; HOG000105163; -. DR KO; K03120; -. DR OMA; MESTINI; -. DR BioCyc; NMAR436308:GI3J-621-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW. DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:UniProtKB-HAMAP. DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro. DR Gene3D; 3.30.310.10; -; 2. DR HAMAP; MF_00408; TATA_bind_prot_arch; 1. DR InterPro; IPR012295; Beta2_adaptin/TBP_C_dom. DR InterPro; IPR000814; TBP. DR InterPro; IPR030491; TBP_CS. DR PANTHER; PTHR10126; PTHR10126; 1. DR Pfam; PF00352; TBP; 2. DR PRINTS; PR00686; TIFACTORIID. DR PROSITE; PS00351; TFIID; 1. PE 3: Inferred from homology; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA-binding {ECO:0000256|HAMAP-Rule:MF_00408, KW ECO:0000256|RuleBase:RU000523}; KW Oxidoreductase {ECO:0000313|EMBL:ABX12494.1}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Repeat {ECO:0000256|HAMAP-Rule:MF_00408}; KW Transcription {ECO:0000256|HAMAP-Rule:MF_00408, KW ECO:0000256|RuleBase:RU000523}; KW Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00408, KW ECO:0000256|RuleBase:RU000523}. FT REPEAT 10 86 1. {ECO:0000256|HAMAP-Rule:MF_00408}. FT REPEAT 101 177 2. {ECO:0000256|HAMAP-Rule:MF_00408}. SQ SEQUENCE 186 AA; 20708 MW; 9F4763EE2091B0E2 CRC64; MPQTKPIVSV ENVVASASVD QKMDLNEITR TFPDVEYHPD QFPGLVFRLK SPKTATLIFT SGKMVCTGSK SEEMARKAVK TVVQKLRKGG IKVKKDAVVE IQNIVASINL GGKIHLEQAA RTLPRSMYEP EQFPGLIHRM LDPKTVILLF SSGKLVCTGA KKEPDVYRSV NNLHALLEEK DLMIYD // ID A9A3G9_NITMS Unreviewed; 267 AA. AC A9A3G9; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 43. DE SubName: Full=Ion transport protein {ECO:0000313|EMBL:ABX12901.1}; GN OrderedLocusNames=Nmar_1005 {ECO:0000313|EMBL:ABX12901.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12901.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12901.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12901.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12901.1; -; Genomic_DNA. DR ProteinModelPortal; A9A3G9; -. DR STRING; 436308.Nmar_1005; -. DR EnsemblBacteria; ABX12901; ABX12901; Nmar_1005. DR KEGG; nmr:Nmar_1005; -. DR eggNOG; arCOG01964; Archaea. DR eggNOG; COG1226; LUCA. DR HOGENOM; HOG000227326; -. DR KO; K10716; -. DR OMA; VENPAQP; -. DR BioCyc; NMAR436308:GI3J-1033-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0008076; C:voltage-gated potassium channel complex; IEA:InterPro. DR GO; GO:0005249; F:voltage-gated potassium channel activity; IEA:InterPro. DR InterPro; IPR005821; Ion_trans_dom. DR InterPro; IPR028325; VG_K_chnl. DR PANTHER; PTHR11537; PTHR11537; 1. DR Pfam; PF00520; Ion_trans; 1. DR PRINTS; PR00169; KCHANNEL. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 24 42 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 54 73 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 94 116 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 157 174 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 186 206 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 218 243 Helical. {ECO:0000256|SAM:Phobius}. FT DOMAIN 23 245 Ion_trans. {ECO:0000259|Pfam:PF00520}. SQ SEQUENCE 267 AA; 30410 MW; F3E2C03BDE1C5485 CRC64; MPNKVLQRTY EILEGTTNDK ITKIFQYFII ALISVNVLFV IIETEESVLD EYGYLFTPFE VFSVIVFTLE YAGRIIVCKL NPKYQNKKFG ILRFVFTPMM LVDLAAILPF FLPFVVMDIR FIRIIRLLRL FRLFKLARYS DSMQTLGNVF KAKAGDLSVA FFILFVVLIF ASSLMYHAEK DAQPEIFSSI PASMWWGIIT LTTIGYGDTY PITLMGKIVG SIVAILGIAV YAIPTGIMAS AFTEELRKRK EQKNNTCPHC GKDITHS // ID A9A1V1_NITMS Unreviewed; 163 AA. AC A9A1V1; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 28. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX12072.1}; GN OrderedLocusNames=Nmar_0176 {ECO:0000313|EMBL:ABX12072.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12072.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12072.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12072.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12072.1; -; Genomic_DNA. DR EnsemblBacteria; ABX12072; ABX12072; Nmar_0176. DR KEGG; nmr:Nmar_0176; -. DR eggNOG; arCOG10518; Archaea. DR eggNOG; ENOG41110VB; LUCA. DR BioCyc; NMAR436308:GI3J-177-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Membrane {ECO:0000256|SAM:Phobius}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}. FT TRANSMEM 7 25 Helical. {ECO:0000256|SAM:Phobius}. FT TRANSMEM 128 148 Helical. {ECO:0000256|SAM:Phobius}. SQ SEQUENCE 163 AA; 18330 MW; 0222ECB33D88FAD4 CRC64; MKISPFKIGL VLVIVGMVWI SIIFANTEKN YDETILKQTS SFEIKSQVTG TDIGFYKIHM PEFTGEEVFV QILDISDNVI QEQVIQTRMS VGYFDFVGNG EYTVKVTNLA KNQVSLEVEF GNTNSKEMIP PGIMVLVGSI SMIVMSYLKI KNYKIAQPDE NIS // ID A9A4M3_NITMS Unreviewed; 650 AA. AC A9A4M3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 64. DE RecName: Full=UvrABC system protein B {ECO:0000256|RuleBase:RU003587}; GN OrderedLocusNames=Nmar_1105 {ECO:0000313|EMBL:ABX13001.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13001.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13001.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13001.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SUBUNIT: Forms a heterotetramer with UvrA during the search for CC lesions. Interacts with UvrC in an incision complex. CC {ECO:0000256|RuleBase:RU003587}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|RuleBase:RU003587}. CC -!- SIMILARITY: Belongs to the UvrB family. CC {ECO:0000256|RuleBase:RU003587}. CC -!- SIMILARITY: Contains 1 UVR domain. CC {ECO:0000256|RuleBase:RU003587}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13001.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4M3; -. DR SMR; A9A4M3; 5-590. DR STRING; 436308.Nmar_1105; -. DR EnsemblBacteria; ABX13001; ABX13001; Nmar_1105. DR KEGG; nmr:Nmar_1105; -. DR eggNOG; arCOG04748; Archaea. DR eggNOG; COG0556; LUCA. DR HOGENOM; HOG000073580; -. DR KO; K03702; -. DR OMA; QEYVDRM; -. DR BioCyc; NMAR436308:GI3J-1136-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0009381; F:excinuclease ABC activity; IEA:InterPro. DR GO; GO:0006289; P:nucleotide-excision repair; IEA:InterPro. DR GO; GO:0009432; P:SOS response; IEA:UniProtKB-KW. DR Gene3D; 3.40.50.300; -; 4. DR Gene3D; 4.10.860.10; -; 1. DR HAMAP; MF_00204; UvrB; 1. DR InterPro; IPR006935; Helicase/UvrB_N. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR001943; UVR_dom. DR InterPro; IPR004807; UvrB. DR InterPro; IPR024759; UvrB_YAD/RRR_dom. DR PANTHER; PTHR24029; PTHR24029; 1. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF04851; ResIII; 1. DR Pfam; PF02151; UVR; 1. DR Pfam; PF12344; UvrB; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF46600; SSF46600; 1. DR SUPFAM; SSF52540; SSF52540; 3. DR TIGRFAMs; TIGR00631; uvrb; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS50151; UVR; 1. PE 3: Inferred from homology; KW ATP-binding {ECO:0000256|RuleBase:RU004294}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW DNA damage {ECO:0000256|RuleBase:RU003587}; KW DNA excision {ECO:0000256|RuleBase:RU003587}; KW DNA repair {ECO:0000256|RuleBase:RU003587}; KW Excision nuclease {ECO:0000256|RuleBase:RU003587}; KW Nucleotide-binding {ECO:0000256|RuleBase:RU004294}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW SOS response {ECO:0000256|RuleBase:RU003587}. FT DOMAIN 27 182 Helicase ATP-binding. FT {ECO:0000259|PROSITE:PS51192}. FT DOMAIN 426 596 Helicase C-terminal. FT {ECO:0000259|PROSITE:PS51194}. FT DOMAIN 607 642 UVR. {ECO:0000259|PROSITE:PS50151}. FT COILED 610 650 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 650 AA; 74840 MW; 9E2D0B6E4F9B3B33 CRC64; MEQITQFELA SEYAPTGDQP QAIDQLVKGV KDKTVQTLLG VTGSGKTFSV ANVIARTGKN TLVISHNKTL AAQLYSELKQ FFPKNNVGYF VSYYDYYQPE SYLPQTDTYI EKDTQVNEKI EKLRLEATAM LLSGEPTIIV STVSCIYSLG NPQDWEDLAI TVTAGDEIKR NELIRQLIDA RYERNDTEVA PGNFRVKGDT IDITPAYSED LVRISMFGDE VEKISVLDHV SLKEKKKINQ MKIFPAKHYL IAKDVRKKAV QSIKDELKKR LPELNELEKQ RLEMRTKYDL EMIEELGYCS GIENYSRHFD GRKAGQKAFC LMDFFGDDYL LVIDESHVTL PQLHGMYKGD HSRKKELVTY GFRLPSAYDN RPLKFEEFEE YVRNTIFVSA TPADYEKKIS SQIAEQLVRP TGLLDPEVEI RPTKNQMDDL IEEINKKVAN SERVLVTTLT KRMAEDLAEY LSKKQVRVRY MHSEIEGLQR TELIRQLRLG EFDVLVGINL LREGLDIPEV SLVAILDADK EGFLRNFTSL IQTFGRAARN ENGNVIMYAD TVTQSMKNAM NETKRRREKQ MKYNKDNNIT PKTIIKSVPE QVTTLDDSKL KSTHDIATDI IDLEAQMKKY SEDLDFERAI ECRDRIKRLE KEIQIKNDRK // ID A9A1Z8_NITMS Unreviewed; 225 AA. AC A9A1Z8; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 41. DE SubName: Full=Chlorite dismutase {ECO:0000313|EMBL:ABX12411.1}; GN OrderedLocusNames=Nmar_0515 {ECO:0000313|EMBL:ABX12411.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12411.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12411.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12411.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12411.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1Z8; -. DR STRING; 436308.Nmar_0515; -. DR EnsemblBacteria; ABX12411; ABX12411; Nmar_0515. DR KEGG; nmr:Nmar_0515; -. DR eggNOG; arCOG03031; Archaea. DR eggNOG; COG3253; LUCA. DR HOGENOM; HOG000248004; -. DR KO; K09162; -. DR OMA; ADLMVWW; -. DR BioCyc; NMAR436308:GI3J-536-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR InterPro; IPR011008; Dimeric_a/b-barrel. DR InterPro; IPR010644; Put_peroxidase/dismutase. DR Pfam; PF06778; Chlor_dismutase; 1. DR SUPFAM; SSF54909; SSF54909; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. SQ SEQUENCE 225 AA; 26463 MW; 2E37C1FB078747C3 CRC64; MSEDNEQYYF NFSFFKVDPK WRWMADLAKE ESAKEVENIL KNSGIKYRAY SNLGLRDDAD FLLWFVGSSL EEIQKAIEKL YKTVFGKYII PSRTYLSCSR PSIYVKGQGK EHGFVTGMDP KKHVIVYPFT KTREWYLLPQ EKRQEIMDEH IEVSKKYPQV ILNTTYSFGI HDEDFMLAFE VDNVRDFQDL IMDLRETQVS TYVKNDIPMI VCIKKDIVPL ISSLG // ID A9A4H2_NITMS Unreviewed; 605 AA. AC A9A4H2; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 53. DE SubName: Full=PilT protein domain protein {ECO:0000313|EMBL:ABX12950.1}; GN OrderedLocusNames=Nmar_1054 {ECO:0000313|EMBL:ABX12950.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12950.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12950.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12950.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12950.1; -; Genomic_DNA. DR ProteinModelPortal; A9A4H2; -. DR STRING; 436308.Nmar_1054; -. DR EnsemblBacteria; ABX12950; ABX12950; Nmar_1054. DR KEGG; nmr:Nmar_1054; -. DR eggNOG; arCOG04116; Archaea. DR eggNOG; COG1855; LUCA. DR HOGENOM; HOG000223941; -. DR KO; K06865; -. DR OMA; QFRDYRI; -. DR BioCyc; NMAR436308:GI3J-1085-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005524; F:ATP binding; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0006810; P:transport; IEA:InterPro. DR Gene3D; 3.30.1370.10; -; 1. DR Gene3D; 3.40.50.1010; -; 1. DR Gene3D; 3.40.50.300; -; 1. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR004088; KH_dom_type_1. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR002716; PIN_dom. DR InterPro; IPR029060; PIN_domain-like. DR InterPro; IPR001482; T2SS_protein-E. DR Pfam; PF00013; KH_1; 1. DR Pfam; PF13638; PIN_4; 1. DR Pfam; PF00437; T2SSE; 1. DR SMART; SM00322; KH; 1. DR SMART; SM00670; PINc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR SUPFAM; SSF54791; SSF54791; 1. DR SUPFAM; SSF88723; SSF88723; 1. DR PROSITE; PS50084; KH_TYPE_1; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 481 517 KH. {ECO:0000259|PROSITE:PS50084}. SQ SEQUENCE 605 AA; 67504 MW; 91AFBA2FE572D639 CRC64; MSKIVVDTSV IINGQLISQI EKGSVKNSQI IIPQAVLDEL QSQASNKKEQ GFVGLEKIRK LKDLSGSFGL EVIQKGTHLS SDEIKLAGGG RIDALIADMA KQNNATLYTS DHVQHLVAQA EGIQTVFLKT EIPKETLEFL KFFDAETMSV HLKENQHPLA KRGKPGAFLL TKISDDILSR EYLEMISSQI LDIANANDSG TIEISKTGAS VVQHEDYRIA ITHPPFSESF EITIVHPIIQ MSLEDYDISE KLMERFSDRA EGIVISGAPG SGKSTLASGL ANFYHNKGKI VKTFESPRDL QVDPGITQYS KLDGSFDNTA DILLLVRPDY TVFDEVRRRE DFRTFADLRL TGVGMVGVVH ANSPLDAIQR FIGKIELGII PNVLDTVVFV KDGQIKKVYD LELKVKVPSG MTESDLARPV IEIRDFADNT LEHEIYTFGE ENVIVPVGKK TKVGIEKLAE EKIRETFKKY DPRAQVEILS DNRVKVMVDE QYIPSIIGRG GSNINEIEKS LQVHVDVVQK DSEHYNLDSN DLPFTFSESK TALILTVSKE YTSMHADVYV RDEYITSTRI GKKGQIKIPK RSDVARTLMK LASSQNDIQL FLKDF // ID A9A2F7_NITMS Unreviewed; 110 AA. AC A9A2F7; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 33. DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABX13196.1}; GN OrderedLocusNames=Nmar_1300 {ECO:0000313|EMBL:ABX13196.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX13196.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX13196.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX13196.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX13196.1; -; Genomic_DNA. DR STRING; 436308.Nmar_1300; -. DR EnsemblBacteria; ABX13196; ABX13196; Nmar_1300. DR KEGG; nmr:Nmar_1300; -. DR eggNOG; arCOG02053; Archaea. DR eggNOG; COG0589; LUCA. DR BioCyc; NMAR436308:GI3J-1333-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0006950; P:response to stress; IEA:InterPro. DR Gene3D; 3.40.50.620; -; 1. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR InterPro; IPR006016; UspA. DR Pfam; PF00582; Usp; 1. PE 4: Predicted; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 27 108 Usp. {ECO:0000259|Pfam:PF00582}. FT COILED 21 48 {ECO:0000256|SAM:Coils}. SQ SEQUENCE 110 AA; 12956 MW; 4893EB0B02D5AD33 CRC64; MIECFYQKPP TFHFFETKTD KIALQKRKEQ IKNELSKWEK AAAKQNVQIK TKFALTDSIA HWVIDYVTEN KVDLLIVDYP KLSMTESTLY DDIINTIHHK AKCHVLTTKQ // ID A9A1U3_NITMS Unreviewed; 308 AA. AC A9A1U3; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 44. DE SubName: Full=NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABX12064.1}; GN OrderedLocusNames=Nmar_0168 {ECO:0000313|EMBL:ABX12064.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12064.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12064.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12064.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12064.1; -; Genomic_DNA. DR ProteinModelPortal; A9A1U3; -. DR STRING; 436308.Nmar_0168; -. DR EnsemblBacteria; ABX12064; ABX12064; Nmar_0168. DR KEGG; nmr:Nmar_0168; -. DR eggNOG; arCOG01369; Archaea. DR eggNOG; COG0451; LUCA. DR HOGENOM; HOG000167994; -. DR KO; K01784; -. DR OMA; MYGLNYV; -. DR BioCyc; NMAR436308:GI3J-169-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0050662; F:coenzyme binding; IEA:InterPro. DR GO; GO:0016857; F:racemase and epimerase activity, acting on carbohydrates and derivatives; IEA:InterPro. DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro. DR Gene3D; 3.40.50.720; -; 1. DR InterPro; IPR001509; Epimerase_deHydtase_N. DR InterPro; IPR016040; NAD(P)-bd_dom. DR InterPro; IPR008089; Nuc_sugar_epim. DR Pfam; PF01370; Epimerase; 1. DR PRINTS; PR01713; NUCEPIMERASE. DR SUPFAM; SSF51735; SSF51735; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 3 238 Epimerase. {ECO:0000259|Pfam:PF01370}. SQ SEQUENCE 308 AA; 34069 MW; A28FFF886E3A0630 CRC64; MKILVTGGAG FIGRHLIKKI NKKHELIIFE NFSNSDEKNI SYLLNDKTKL VKGDLTDFSL INSSLSNVDL VIHLAAKIDI LQSIEHPDQT HKINVEGSLN LLRACVKNNV KNFIAASSAA VYGNPKQIPV TEFTIPNPVS PYGADKIALE FYLRAFCNAY GINGIALRFF NVYGLGQSNA YAGVITKFLN QIHQTKPLRI FGDGKNTRDF IHIDDLVMGI EQSISNISGK RGSVYNLASG KSVSVKELAK LMLEISDKKL EIKYESPRKG DLLYSSASID LAKNDLSFVP KISLKDGISS LMKEINYQ // ID A9A5M6_NITMS Unreviewed; 371 AA. AC A9A5M6; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 53. DE SubName: Full=Propanoyl-CoA C-acyltransferase {ECO:0000313|EMBL:ABX12737.1}; DE EC=2.3.1.176 {ECO:0000313|EMBL:ABX12737.1}; GN OrderedLocusNames=Nmar_0841 {ECO:0000313|EMBL:ABX12737.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12737.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12737.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12737.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC -!- SIMILARITY: Belongs to the thiolase family. CC {ECO:0000256|RuleBase:RU003557}. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12737.1; -; Genomic_DNA. DR ProteinModelPortal; A9A5M6; -. DR STRING; 436308.Nmar_0841; -. DR EnsemblBacteria; ABX12737; ABX12737; Nmar_0841. DR KEGG; nmr:Nmar_0841; -. DR eggNOG; arCOG01278; Archaea. DR eggNOG; COG0183; LUCA. DR HOGENOM; HOG000221739; -. DR KO; K00626; -. DR OMA; CEPCADI; -. DR BioCyc; NMAR436308:GI3J-868-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0033814; F:propanoyl-CoA C-acyltransferase activity; IEA:UniProtKB-EC. DR Gene3D; 3.40.47.10; -; 4. DR InterPro; IPR002155; Thiolase. DR InterPro; IPR016039; Thiolase-like. DR InterPro; IPR020617; Thiolase_C. DR InterPro; IPR020616; Thiolase_N. DR Pfam; PF02803; Thiolase_C; 1. DR Pfam; PF00108; Thiolase_N; 1. DR PIRSF; PIRSF000429; Ac-CoA_Ac_transf; 1. DR SUPFAM; SSF53901; SSF53901; 2. PE 3: Inferred from homology; KW Acyltransferase {ECO:0000313|EMBL:ABX12737.1}; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}; KW Transferase {ECO:0000313|EMBL:ABX12737.1}. FT DOMAIN 12 170 Thiolase_N. {ECO:0000259|Pfam:PF00108}. FT DOMAIN 249 352 Thiolase_C. {ECO:0000259|Pfam:PF02803}. SQ SEQUENCE 371 AA; 40292 MW; 5ECB6D3F07571356 CRC64; MSMNKVGIAA YGITPFTKDD KKIESALFES TKNLIENNPK IKKNDIDAVL VSTNNNSKYL APILSEAIGI QPKTAHSIEN LCNSGTNSIV SAYSYIAAGL ADMVLVSGAE RYDSPGQILE WDNSRGEFKH PIFWASIFTS SYKRKFSVTD EQLAIVSVKN HSQAQNNPNA LSKKTYSVQD VIDSKKITDD LRLLDCSRSC TGSASIILAS ENMMKKITDQ PIWITGVGQK TISAGFTKNE SFNSMESTKH ATQTALNMAK RKIKDIDVAE VHDAFSVCEP MALEAIGMAN PGKGTTIVKE LYETKNLKIN PRGGLIGCGH PLGATGIAQT IEIMQQLQNN AEKRQVENAN VGLVHNMSAA ATSSTILVLE K // ID A9A448_NITMS Unreviewed; 526 AA. AC A9A448; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 09-DEC-2015, entry version 45. DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ABX12232.1}; GN OrderedLocusNames=Nmar_0336 {ECO:0000313|EMBL:ABX12232.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12232.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12232.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12232.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12232.1; -; Genomic_DNA. DR ProteinModelPortal; A9A448; -. DR STRING; 436308.Nmar_0336; -. DR EnsemblBacteria; ABX12232; ABX12232; Nmar_0336. DR KEGG; nmr:Nmar_0336; -. DR eggNOG; arCOG01357; Archaea. DR eggNOG; COG1032; LUCA. DR HOGENOM; HOG000109414; -. DR OMA; WAIMRYL; -. DR BioCyc; NMAR436308:GI3J-351-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0003824; F:catalytic activity; IEA:InterPro. DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro. DR Gene3D; 3.80.30.20; -; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR023970; MeThioTfrase/rSAM. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR PANTHER; PTHR11918; PTHR11918; 1. DR Pfam; PF04055; Radical_SAM; 1. DR SMART; SM00729; Elp3; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 214 463 Elp3. {ECO:0000259|SMART:SM00729}. SQ SEQUENCE 526 AA; 59390 MW; 6BB30AB1CD8F109F CRC64; MSGKRVVLTA DRSLMTNYRG NFLYGFIACG PYEVLPEWVF DKVFCPSVET DPITGEAKVA QIGLRRIESS LIQGGYNRED VFIGHPDMLH KSIGPDTKVV GINVMDPLGM APVTTTMSPE KLSYVAMKFK KMCASIIQLK KKYDFKVVVG GNGAWELAKS DRMKIHGIDT VVVGEADELA VDLFQDLEKN DAPELMHCFV RNLENIPVIE GPTINSLIEA MRGCGRGCDF CDVNKRSKKD LPIDRLQHEA KTNLDYGFDS IWLHSDEMLL YGCDNRDFVP NRDAITDLWK SLKGLGANFI GTTHMTFSAV AADPTLMQQI SHVNGQDQSG RWLATNLGIE TVAPDMVKKH LGVKTRPFST EEWGSVVREG AKILNENHWF PAATIIIGWP DETPDDIQYT IDMMSDFREM DFRGLVAPLL YQDFSEKNSM HFGNLNEAQF TLFWKCWENN LRVINDIIPI ILRNKTYGPP MKVFMYGILK AGTWAIMRYL RGLCKDLFNG RTPDEIIDKY ARSRSVSAPK IQTKKL // ID A9A573_NITMS Unreviewed; 125 AA. AC A9A573; DT 15-JAN-2008, integrated into UniProtKB/TrEMBL. DT 15-JAN-2008, sequence version 1. DT 16-MAR-2016, entry version 51. DE SubName: Full=Response regulator receiver protein {ECO:0000313|EMBL:ABX12272.1}; GN OrderedLocusNames=Nmar_0376 {ECO:0000313|EMBL:ABX12272.1}; OS Nitrosopumilus maritimus (strain SCM1). OC Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; OC Nitrosopumilus. OX NCBI_TaxID=436308 {ECO:0000313|EMBL:ABX12272.1, ECO:0000313|Proteomes:UP000000792}; RN [1] {ECO:0000313|EMBL:ABX12272.1, ECO:0000313|Proteomes:UP000000792} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=SCM1 {ECO:0000313|EMBL:ABX12272.1, RC ECO:0000313|Proteomes:UP000000792}; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., RA Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., RA Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., RA Lykidis A., Stahl D., Richardson P.; RT "Complete sequence of Nitrosopumilus maritimus SCM1."; RL Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases. CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution-NoDerivs License CC ----------------------------------------------------------------------- DR EMBL; CP000866; ABX12272.1; -; Genomic_DNA. DR ProteinModelPortal; A9A573; -. DR STRING; 436308.Nmar_0376; -. DR EnsemblBacteria; ABX12272; ABX12272; Nmar_0376. DR KEGG; nmr:Nmar_0376; -. DR eggNOG; ENOG4102TV8; Archaea. DR eggNOG; COG0784; LUCA. DR HOGENOM; HOG000034820; -. DR KO; K03413; -. DR OMA; HENDPTF; -. DR BioCyc; NMAR436308:GI3J-392-MONOMER; -. DR Proteomes; UP000000792; Chromosome. DR GO; GO:0005622; C:intracellular; IEA:GOC. DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:InterPro. DR InterPro; IPR011006; CheY-like_superfamily. DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver. DR Pfam; PF00072; Response_reg; 1. DR SMART; SM00448; REC; 1. DR SUPFAM; SSF52172; SSF52172; 1. DR PROSITE; PS50110; RESPONSE_REGULATORY; 1. PE 4: Predicted; KW Complete proteome {ECO:0000313|Proteomes:UP000000792}; KW Reference proteome {ECO:0000313|Proteomes:UP000000792}. FT DOMAIN 4 118 Response regulatory. FT {ECO:0000259|PROSITE:PS50110}. SQ SEQUENCE 125 AA; 14160 MW; 9FAE80D4B6BFD122 CRC64; MTIQALVVDD DQNVLNTFVD LLDICKINVV GTAKNGKEAI EQFKKLTPDL VFLDIMMPEF DGRYALREIR NIDQNIPVVM ISGGDDDAID KLLEFKPSAV LHKPFRMNTL LDILKNELKL ELDSN //